From 3e28af2b50c0cdf4fc529cff37e99cc0b01f15d2 Mon Sep 17 00:00:00 2001 From: Pascal Repond Date: Tue, 17 Mar 2026 15:30:41 +0100 Subject: [PATCH] refactor: remove RERODOC harvesting pipeline and legacy URL support RERO DOC repository is now closed. Remove the MARC21 transformation pipeline, CLI commands, loader schema, rerod PID minting, /rerodoc/ redirection routes, OAI source config, and all associated tests. Co-Authored-by: Pascal Repond --- data/oai_sources.json | 8 - sonar/modules/documents/cli/documents.py | 4 +- sonar/modules/documents/cli/rerodoc.py | 138 - .../documents/dojson/rerodoc/__init__.py | 16 - .../modules/documents/dojson/rerodoc/model.py | 990 ------- .../documents/dojson/rerodoc/model.py_hesso | 1168 -------- .../documents/dojson/rerodoc/overdo.py | 141 - .../documents/loaders/schemas/factory.py | 4 +- .../documents/loaders/schemas/rerodoc.py | 61 - sonar/modules/documents/minters.py | 19 +- sonar/theme/views.py | 53 +- tests/conftest.py | 3 +- tests/ui/conftest.py | 4 +- tests/ui/data/harvested_record.xml | 132 +- .../documents/cli/test_documents_cli_ark.py | 2 +- .../cli/test_documents_cli_rerodoc.py | 57 - .../dojson/rerodoc/test_rerodoc_model.py | 2587 ----------------- .../dojson/rerodoc/test_rerodoc_overdo.py | 114 - tests/ui/documents/test_documents_api.py | 20 +- .../ui/documents/test_documents_receivers.py | 12 +- tests/ui/test_views.py | 41 +- .../loaders/test_loader_schema_factory.py | 14 +- .../documents/loaders/test_rerodoc_loader.py | 220 -- uv.lock | 554 ++-- 24 files changed, 341 insertions(+), 6021 deletions(-) delete mode 100644 sonar/modules/documents/cli/rerodoc.py delete mode 100644 sonar/modules/documents/dojson/rerodoc/__init__.py delete mode 100644 sonar/modules/documents/dojson/rerodoc/model.py delete mode 100644 sonar/modules/documents/dojson/rerodoc/model.py_hesso delete mode 100644 sonar/modules/documents/dojson/rerodoc/overdo.py delete mode 100644 sonar/modules/documents/loaders/schemas/rerodoc.py delete mode 100644 tests/ui/documents/cli/test_documents_cli_rerodoc.py delete mode 100644 tests/ui/documents/dojson/rerodoc/test_rerodoc_model.py delete mode 100644 tests/ui/documents/dojson/rerodoc/test_rerodoc_overdo.py delete mode 100644 tests/unit/documents/loaders/test_rerodoc_loader.py diff --git a/data/oai_sources.json b/data/oai_sources.json index 707bf3c0a..03b8493ae 100644 --- a/data/oai_sources.json +++ b/data/oai_sources.json @@ -1,12 +1,4 @@ [ - { - "key": "rerodoc", - "name": "rerodoc", - "url": "http://doc.rero.ch/oai2d", - "metadataprefix": "marcxml", - "comment": "", - "setspecs": "unisi unifr nl-epfl nl-ethz nl-fachhochschulen nl-lib4ri nl-unibas nl-unibe nl-unifr nl-unige nl-unil nl-unilu nl-unine nl-unisg nl-usi nl-uzh bge mhnge baage bmuge imvge mhsge hepbejune unifr" - }, { "key": "archive_ouverte_unige", "name": "Archive ouverte UNIGE", diff --git a/sonar/modules/documents/cli/documents.py b/sonar/modules/documents/cli/documents.py index cdea9e199..2841b7c96 100644 --- a/sonar/modules/documents/cli/documents.py +++ b/sonar/modules/documents/cli/documents.py @@ -1,5 +1,5 @@ # Swiss Open Access Repository -# Copyright (C) 2021 RERO +# Copyright (C) 2021-2026 RERO # # This program is free software: you can redistribute it and/or modify # it under the terms of the GNU Affero General Public License as published by @@ -18,7 +18,6 @@ import click from .oai import oai -from .rerodoc import rerodoc from .urn import urn @@ -27,6 +26,5 @@ def documents(): """Commands for documents.""" -documents.add_command(rerodoc) documents.add_command(urn) documents.add_command(oai) diff --git a/sonar/modules/documents/cli/rerodoc.py b/sonar/modules/documents/cli/rerodoc.py deleted file mode 100644 index 5a599ef4f..000000000 --- a/sonar/modules/documents/cli/rerodoc.py +++ /dev/null @@ -1,138 +0,0 @@ -# Swiss Open Access Repository -# Copyright (C) 2021 RERO -# -# This program is free software: you can redistribute it and/or modify -# it under the terms of the GNU Affero General Public License as published by -# the Free Software Foundation, version 3 of the License. -# -# This program is distributed in the hope that it will be useful, -# but WITHOUT ANY WARRANTY; without even the implied warranty of -# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the -# GNU Affero General Public License for more details. -# -# You should have received a copy of the GNU Affero General Public License -# along with this program. If not, see . - -"""RERODOC specific CLI commands.""" - -import csv -import re - -import click -from flask import current_app -from flask.cli import with_appcontext -from invenio_db import db - -from sonar.modules.documents.api import DocumentIndexer, DocumentRecord - - -@click.group() -def rerodoc(): - """RERODOC specific commands.""" - - -@rerodoc.command("update-file-permissions") -@click.argument("permissions_file", type=click.File("r")) -@click.option("-c", "--chunk-size", type=int, default=500, help="Chunk size for bulk indexing.") -@with_appcontext -def update_file_permissions(permissions_file, chunk_size): - """Update file permission with information given by input file. - - :param permissions_file: CSV file containing files permissions. - """ - indexer = DocumentIndexer(record_cls=DocumentRecord) - - def save_records(ids): - """Save current records set into database and re-index. - - :param ids: List of records to save - """ - db.session.commit() - indexer.bulk_index(ids) - indexer.process_bulk_queue() - - try: - with open(permissions_file.name) as file: - reader = csv.reader(file, delimiter=",") - - # header - header = next(reader) - - # check number of columns - if len(header) != 3: - raise Exception("CSV file seems to be not well formatted.") - - # To store ids for bulk indexing - ids = [] - - for row in reader: - try: - # try to load corresponding record - record = DocumentRecord.get_record_by_identifier([{"type": "bf:Local", "value": row[0]}]) - - # No record found, skipping.. - if not record: - raise Exception(f"Record {row[0]} not found") - - file_name = f"{row[2]}.pdf" - - # File not found in record, skipping - if file_name not in record.files: - raise Exception(f"File {file_name} not found in record {row[0]}") - - record_file = record.files[file_name] - - # permissions contains a status - matches = re.search(r"status:(\w+)$", row[1]) - if matches: - # If status if RERO or INTERNAL, file must not be - # displayed, otherwise file is not accessible outside - # organisation - record_file["access"] = "coar:c_16ec" # restricted access - if matches.group(1) in ["RERO", "INTERNAL"]: - record_file["restricted_outside_organisation"] = False - else: - record_file["restricted_outside_organisation"] = True - else: - # permissions contains a date - matches = re.search( - r"allow roles \/\.\*,(\w+),\.\*\/\n\s+.+(\d{4}-" - r"\d{2}-\d{2})", - row[1], - ) - - if matches: - # file is accessible inside organisation - if matches.group(1) != "INTERNAL": - record_file["restricted_outside_organisation"] = True - # file is not accessible - else: - record_file["restricted_outside_organisation"] = False - - record_file["access"] = "coar:c_f1cf" # embargoed access - record_file["embargo_date"] = matches.group(2) - - record.commit() - db.session.flush() - ids.append(str(record.id)) - - current_app.logger.warning(f"Restriction added for file {file_name} in record {record['pid']}.") - - # Bulk save and index - if len(ids) % chunk_size == 0: - save_records(ids) - ids = [] - - except Exception as exception: - click.secho(str(exception), fg="yellow") - - # save remaining records - save_records(ids) - - click.secho("Process finished", fg="green") - - except Exception as exception: - click.secho( - f"An error occured during file process: {exception}", - fg="red", - ) diff --git a/sonar/modules/documents/dojson/rerodoc/__init__.py b/sonar/modules/documents/dojson/rerodoc/__init__.py deleted file mode 100644 index da7f08d42..000000000 --- a/sonar/modules/documents/dojson/rerodoc/__init__.py +++ /dev/null @@ -1,16 +0,0 @@ -# Swiss Open Access Repository -# Copyright (C) 2021 RERO -# -# This program is free software: you can redistribute it and/or modify -# it under the terms of the GNU Affero General Public License as published by -# the Free Software Foundation, version 3 of the License. -# -# This program is distributed in the hope that it will be useful, -# but WITHOUT ANY WARRANTY; without even the implied warranty of -# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the -# GNU Affero General Public License for more details. -# -# You should have received a copy of the GNU Affero General Public License -# along with this program. If not, see . - -"""DOJSON RERODOC transformation for SONAR.""" diff --git a/sonar/modules/documents/dojson/rerodoc/model.py b/sonar/modules/documents/dojson/rerodoc/model.py deleted file mode 100644 index 6629708b4..000000000 --- a/sonar/modules/documents/dojson/rerodoc/model.py +++ /dev/null @@ -1,990 +0,0 @@ -# Swiss Open Access Repository -# Copyright (C) 2021 RERO -# -# This program is free software: you can redistribute it and/or modify -# it under the terms of the GNU Affero General Public License as published by -# the Free Software Foundation, version 3 of the License. -# -# This program is distributed in the hope that it will be useful, -# but WITHOUT ANY WARRANTY; without even the implied warranty of -# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the -# GNU Affero General Public License for more details. -# -# You should have received a copy of the GNU Affero General Public License -# along with this program. If not, see . - -"""RERODOC MARC21 model definition.""" - -import hashlib -import re - -from dojson import utils -from flask import current_app -from invenio_db import db - -from sonar.modules.collections.api import Record as CollectionRecord -from sonar.modules.documents.dojson.rerodoc.overdo import Overdo -from sonar.modules.organisations.api import OrganisationRecord -from sonar.modules.subdivisions.api import Record as SubdivisionRecord -from sonar.modules.subdivisions.api import RecordSearch -from sonar.modules.utils import remove_trailing_punctuation - -overdo = Overdo() - -TYPE_MAPPINGS = { - "PREPRINT|": "coar:c_816b", - "POSTPRINT|ART_JOURNAL": "coar:c_6501", - "POSTPRINT|ART_INBOOK": "coar:c_3248", - "POSTPRINT|ART_INPROC": "coar:c_5794", - "BOOK|": "coar:c_2f33", - "DISSERTATION|DISS_MASTER": "coar:c_bdcc", - "DISSERTATION|DISS_BACHELOR": "coar:c_7a1f", - "DISSERTATION|DISS_CONT_EDU": "coar:c_46ec", - "THESIS|": "coar:c_db06", - "THESIS|TH_PHD": "coar:c_db06", - "THESIS|TH_HABILIT": "coar:c_46ec", - "MAP|": "coar:c_12cc", - "REPORT|": "coar:c_18ws", - "NEWSPAPER|": "coar:c_2fe3", - "JOURNAL|": "coar:c_0640", - "PRINT_MEDIA|": "coar:c_2fe3", - "AUDIO|": "coar:c_18cc", - "IMAGE|": "coar:c_ecc8", - "PARTITION|": "coar:c_18cw", -} - - -@overdo.over("type", "^980") -@utils.ignore_value -def marc21_to_type_and_organisation(self, key, value): - """Get document type and organisation from 980 field.""" - subdivision_name = None - - # organisation - if value.get("b"): - organisation = value.get("b").lower() - - # Specific transformation for `unisi`, because the real acronym is - # `usi`. - if organisation == "unisi": - organisation = "usi" - - # Specific transformation for `hep bejune`, in order to fill out - # custom fields `Filière` (`customField1`) and `Titre obtenu` - # (`customField2`) - if organisation == "hepbejune" and value.get("f"): - document_subtype = value.get("f").lower() - custom_field1 = "" - custom_field2 = "" - if document_subtype == "diss_bachelor": - custom_field1 = "Enseignement primaire" - custom_field2 = "Bachelor of Arts in Pre-Primary and Primary Education" - elif document_subtype == "diss_master": - custom_field1 = "Enseignement secondaire" - custom_field2 = "Master of Arts or of Science in Secondary Education" - if custom_field1: - self["customField1"] = [custom_field1] - if custom_field2: - self["customField2"] = [custom_field2] - - # Specific transformation for `hepfr`, which should be imported as - # a faculty AND a subdivision of FOLIA/unifr - if organisation == "hepfr": - organisation = "unifr" - self["organisation"] = [{"$ref": OrganisationRecord.get_ref_link("organisations", organisation)}] - # `hepfr` is a faculty of FOLIA/unifr - self["customField1"] = ["HEP|PH FR"] - # `hepfr` is a subdivision of FOLIA/unifr - subdivision_name = "HEP Fribourg" - # Store subdivision - # TODO: avoid possible clashes between subdivision - # names in different languages - result = ( - RecordSearch() - .filter("term", organisation__pid=organisation) - .filter("term", name__value__raw=subdivision_name) - .source(includes="pid") - .scan() - ) - subdivision_pid = next(result).pid - # If the subdivision exists, assign it to the record - if subdivision_pid: - self["subdivisions"] = [{"$ref": SubdivisionRecord.get_ref_link("subdivisions", subdivision_pid)}] - - # Specific transformation for `bpuge` and `mhnge`, because the real - # acronym is `vge`. - subdivision_name = None - - if organisation in ["bpuge", "mhnge", "baage", "bmuge", "imvge", "mhsge"]: - subdivision_name = "bge" if organisation == "bpuge" else organisation - organisation = "vge" - - if organisation not in overdo.registererd_organisations: - overdo.create_organisation(organisation) - overdo.registererd_organisations.append(organisation) - - self["organisation"] = [{"$ref": OrganisationRecord.get_ref_link("organisations", organisation)}] - - if subdivision_name: - # Store subdivision - hash_key = hashlib.md5((subdivision_name + organisation).encode()).hexdigest() - - subdivision_pid = SubdivisionRecord.get_pid_by_hash_key(hash_key) - - # No subdivision found - if not subdivision_pid: - subdivision = SubdivisionRecord.create( - { - "name": [{"language": "eng", "value": subdivision_name}], - "organisation": {"$ref": OrganisationRecord.get_ref_link("organisations", organisation)}, - "hashKey": hash_key, - } - ) - subdivision.commit() - subdivision.reindex() - db.session.commit() - subdivision_pid = subdivision["pid"] - - self["subdivisions"] = [{"$ref": SubdivisionRecord.get_ref_link("subdivisions", subdivision_pid)}] - - # get doc type by mapping - key = value.get("a", "") + "|" + value.get("f", "") - if key not in TYPE_MAPPINGS: - current_app.logger.warning(f'Document type not found in mapping for type "{key}"') - return - - # Store types to records - self["documentType"] = TYPE_MAPPINGS[key] - - return - - -@overdo.over("language", "^041") -@utils.for_each_value -@utils.ignore_value -def marc21_to_language(self, key, value): - """Get languages.""" - if not value.get("a"): - return - - language = self.get("language", []) - - for code in utils.force_list(value.get("a")): - language.append({"type": "bf:Language", "value": code}) - - self["language"] = language - - return - - -@overdo.over("title", "^245..") -@utils.for_each_value -@utils.ignore_value -def marc21_to_title_245(self, key, value): - """Get title.""" - main_title = value.get("a") - language = value.get("9", "eng") - subtitle = value.get("b") - - if not main_title: - return None - - title = { - "type": "bf:Title", - "mainTitle": [{"value": main_title.rstrip(":"), "language": language}], - } - - if subtitle: - title["subtitle"] = [{"value": subtitle, "language": language}] - - return title - - -@overdo.over("title", "^246..") -@utils.for_each_value -@utils.ignore_value -def marc21_to_title_246(self, key, value): - """Get title.""" - main_title = value.get("a") - language = value.get("9", "eng") - - if not main_title: - return - - title = self.get("title", [{"type": "bf:Title", "mainTitle": []}]) - - # Add title 246 to last title in mainTitle propert - title[-1]["mainTitle"].append({"value": main_title, "language": language}) - - self["title"] = title - - return - - -@overdo.over("editionStatement", "^250..") -@utils.ignore_value -def marc21_to_edition_statement(self, key, value): - """Get edition statement data.""" - if not value.get("a") or not value.get("b"): - return None - - return { - "editionDesignation": {"value": value.get("a")}, - "responsibility": {"value": value.get("b")}, - } - - -@overdo.over("provisionActivity", "^260..") -@utils.for_each_value -@utils.ignore_value -def marc21_to_provision_activity_field_260(self, key, value): - """Get provision activity data from field 260.""" - provision_activity = self.get("provisionActivity", []) - - # Only if there is a date - if value.get("c"): - publication = {"type": "bf:Publication", "statement": []} - - # Place - if value.get("a"): - publication["statement"].append({"type": "bf:Place", "label": [{"value": value.get("a")}]}) - - # Agent - if value.get("b"): - publication["statement"].append( - { - "type": "bf:Agent", - "label": [{"value": remove_trailing_punctuation(value.get("b"))}], - } - ) - - years = value.get("c").split("-") - - # Start date - if years and re.match(r"^\d{4}$", years[0]): - publication["startDate"] = years[0] - - publication["statement"].append({"type": "Date", "label": [{"value": value.get("c")}]}) - - # End date - if len(years) > 1 and re.match(r"^\d{4}$", years[1]): - publication["endDate"] = years[1] - - provision_activity.append(publication) - - # Manufacture - if value.get("e") or value.get("f"): - manufacture = {"type": "bf:Manufacture", "statement": []} - - if value.get("e"): - manufacture["statement"].append( - { - "type": "bf:Place", - "label": [{"value": remove_trailing_punctuation(value.get("e"))}], - } - ) - - if value.get("f"): - manufacture["statement"].append({"type": "bf:Agent", "label": [{"value": value.get("f")}]}) - - provision_activity.append(manufacture) - - # Re-assign provision activity - if provision_activity: - self["provisionActivity"] = provision_activity - - return - - -@overdo.over("provisionActivity", "^269..") -@utils.ignore_value -def marc21_to_provision_activity_field_269(self, key, value): - """Get provision activity data from field 269.""" - # 260$c has priority to this date - if overdo.blob_record.get("260__", {}).get("c"): - return - - # No date, skipping - if not value.get("c"): - return - - # Assign start date - match = re.search(r"^[0-9]{4}(-[0-9]{2}-[0-9]{2})?$", value.get("c")) - - # Date does not match "YYYY" or "YYYY-MM-DD" - if not match: - return - - add_provision_activity_start_date(self, value.get("c")) - - return - - -@overdo.over("formats", "^300..") -@utils.ignore_value -def marc21_to_description(self, key, value): - """Get extent, otherMaterialCharacteristics, formats. - - extent: 300$a (the first one if many) - otherMaterialCharacteristics: 300$b (the first one if many) - formats: 300 [$c repetitive] - """ - if value.get("a") and not self.get("extent"): - self["extent"] = remove_trailing_punctuation(overdo.not_repetitive(value, "a")) - - if value.get("b") and self.get("otherMaterialCharacteristics", []) == []: - self["otherMaterialCharacteristics"] = remove_trailing_punctuation(overdo.not_repetitive(value, "b")) - - if value.get("c"): - formats = self.get("formats") - - if not formats: - data = value.get("c") - formats = list(utils.force_list(data)) - - return formats - - return None - - -@overdo.over("series", "^490..") -@utils.for_each_value -@utils.ignore_value -def marc21_to_series(self, key, value): - """Get series. - - series.name: [490$a repetitive] - series.number: [490$v repetitive] - """ - series = {} - - name = value.get("a") - if name: - series["name"] = ", ".join(utils.force_list(name)) - - number = value.get("v") - if number: - series["number"] = ", ".join(utils.force_list(number)) - - return series - - -@overdo.over("abstracts", "^520..") -@utils.for_each_value -@utils.ignore_value -def marc21_to_abstract(self, key, value): - """Get abstract.""" - abstract = value.get("a") - language = value.get("9", "eng") - - if not abstract: - return - - if language == "fr": - language = "fre" - - abstracts_data = self.get("abstracts", []) - abstracts_data.append({"value": abstract, "language": language}) - - self["abstracts"] = abstracts_data - - return - - -@overdo.over("identifiedBy", "001") -@utils.ignore_value -def marc21_to_identified_by_from_001(self, key, value): - """Get identifier from field 001.""" - identified_by = self.get("identifiedBy", []) - - identified_by.append({"type": "bf:Local", "source": "RERO DOC", "value": value}) - - return identified_by - - -@overdo.over("identifiedBy", "^020..") -@utils.ignore_value -def marc21_to_identified_by_from_020(self, key, value): - """Get identifier from field 020.""" - identified_by = self.get("identifiedBy", []) - - if not value.get("a"): - return None - - identified_by.append({"type": "bf:Isbn", "value": value.get("a")}) - - return identified_by - - -@overdo.over("identifiedBy", "^0247.") -@utils.ignore_value -def marc21_to_identified_by_from_024(self, key, value): - """Get identifier from field 024.""" - identified_by = self.get("identifiedBy", []) - - if not value.get("a") or value.get("2") != "urn": - return None - - identified_by.append({"type": "bf:Urn", "value": value.get("a")}) - - return identified_by - - -@overdo.over("identifiedBy", "^027..") -@utils.ignore_value -def marc21_to_identified_by_from_027(self, key, value): - """Get identifier from field 027.""" - identified_by = self.get("identifiedBy", []) - - if not value.get("a"): - return None - - identified_by.append({"type": "bf:Strn", "value": value.get("a")}) - - return identified_by - - -@overdo.over("identifiedBy", "^035..") -@utils.ignore_value -def marc21_to_identified_by_from_035(self, key, value): - """Get identifier from field 035.""" - identified_by = self.get("identifiedBy", []) - - if not value.get("a"): - return None - - identified_by.append({"type": "bf:Local", "source": "RERO", "value": value.get("a")}) - - return identified_by - - -@overdo.over("identifiedBy", "^037..") -@utils.ignore_value -def marc21_to_identified_by_from_037(self, key, value): - """Get identifier from field 037.""" - identified_by = self.get("identifiedBy", []) - - if not value.get("a"): - return None - - identified_by.append( - { - "type": "bf:Local", - "source": "Swissbib", - "value": value.get("a").replace("swissbib.ch:", "").strip(), - } - ) - - return identified_by - - -@overdo.over("identifiedBy", "^088..") -@utils.ignore_value -def marc21_to_identified_by_from_088(self, key, value): - """Get identifier from field 088.""" - identified_by = self.get("identifiedBy", []) - - if not value.get("a"): - return None - - identified_by.append({"type": "bf:ReportNumber", "value": value.get("a")}) - - return identified_by - - -@overdo.over("identifiedBy", "^091..") -@utils.ignore_value -def marc21_to_identified_by_from_091(self, key, value): - """Get identifier from field 091.""" - identified_by = self.get("identifiedBy", []) - - if not value.get("a") or value.get("b") != "pmid": - return None - - identified_by.append({"type": "bf:Local", "value": value.get("a"), "source": "PMID"}) - - return identified_by - - -@overdo.over("notes", "^500..") -@utils.for_each_value -@utils.ignore_value -def marc21_to_notes(self, key, value): - """Get notes.""" - return overdo.not_repetitive(value, "a") - - -@overdo.over("subjects", "^600..|695..") -@utils.for_each_value -@utils.ignore_value -def marc21_to_subjects(self, key, value): - """Get subjects.""" - if not value.get("a"): - return None - - subjects = {"label": {"value": [item for item in value.get("a").split(" ; ") if item]}} - - # If field is 695 and no language is available - if key == "695__": - if not value.get("9"): - return None - - subjects["label"]["language"] = value.get("9") - - # If field is 600 and no source is available - if key == "600__": - if not value.get("2"): - return None - - subjects["source"] = value.get("2") - - return subjects - - -@overdo.over("files", "^856..") -@utils.for_each_value -@utils.ignore_value -def marc21_to_files(self, key, value): - """Get files.""" - key = value.get("f") - url = value.get("u") - mime_type = value.get("q", "text/plain") - - if not key or not url: - return None - - # TODO: Check why this type of file exists. Real example with rerodoc ID - # 29085 - if mime_type == "pdt/download": - current_app.logger.warning( - f"File {key} for record {self['identifiedBy']} has a strange pdt/download mime " - "type, skipping import of file..." - ) - return None - - url = url.strip() - - # Retreive file order - # If order not set we put a value to 99 for easily point theses files - order = 99 - if value.get("y"): - match = re.search(r"order:([0-9]+)$", value.get("y")) - if match: - order = int(match.group(1)) - - return { - "key": key, - "url": url, - "label": value.get("z", key), - "type": "file", - "order": order, - } - - -@overdo.over("otherEdition", "^775..") -@utils.for_each_value -@utils.ignore_value -def marc21_to_other_edition(self, key, value): - """Get other edition.""" - electronic_locator = value.get("o") - public_note = value.get("g") - - if not electronic_locator or not public_note: - return None - - # if the value matches a DOI, apply `identifiedBy[type:bf:Doi]` - matches = re.search(r"(?P10\.\d{4,9}/[-._;()/:a-zA-Z0-9]+)", value.get("o")) - if matches and matches.group("doi"): - identified_by = self.get("identifiedBy", []) - identified_by.append({"type": "bf:Doi", "value": matches.group("doi")}) - self["identifiedBy"] = identified_by - return None - return { - "document": {"electronicLocator": electronic_locator}, - "publicNote": public_note, - } - - -@overdo.over("collections", "^982..") -@utils.for_each_value -@utils.ignore_value -def marc21_to_specific_collection(self, key, value): - """Extract collection for record.""" - if not value.get("a"): - return None - - # No organisation found, the collection is not imported. - if not self.get("organisation"): - return None - - organisation_pid = OrganisationRecord.get_pid_by_ref_link(self["organisation"][0]["$ref"]) - - hash_key = hashlib.md5((value.get("a") + organisation_pid).encode()).hexdigest() - - collection_pid = CollectionRecord.get_pid_by_hash_key(hash_key) - - # No collection found - if not collection_pid: - collection = CollectionRecord.create( - { - "name": [{"language": "eng", "value": value.get("a")}], - "organisation": {"$ref": self["organisation"][0]["$ref"]}, - "hashKey": hash_key, - } - ) - collection.commit() - collection.reindex() - db.session.commit() - collection_pid = collection["pid"] - - return {"$ref": CollectionRecord.get_ref_link("collections", collection_pid)} - - -@overdo.over("classification", "^080..") -@utils.for_each_value -@utils.ignore_value -def marc21_to_classification_field_080(self, key, value): - """Get classification data from field 080.""" - if not value.get("a"): - return None - - return {"type": "bf:ClassificationUdc", "classificationPortion": value.get("a")} - - -@overdo.over("classification", "^084..") -@utils.for_each_value -@utils.ignore_value -def marc21_to_classification_field_084(self, key, value): - """Get classification data from field 084.""" - if not value.get("a") or value.get("2") != "ddc": - return None - - return {"type": "bf:ClassificationDdc", "classificationPortion": value.get("a")} - - -@overdo.over("contentNote", "^505..") -@utils.for_each_value -@utils.ignore_value -def marc21_to_content_note(self, key, value): - """Extract collection for record.""" - return value.get("a") - - -@overdo.over("dissertation", "^502..") -@utils.ignore_value -def marc21_to_dissertation_field_502(self, key, value): - """Extract dissertation degree.""" - record = overdo.blob_record - if value.get("a"): - dissertation = self.get("dissertation", {}) - dissertation["degree"] = value.get("a") - self["dissertation"] = dissertation - - # try to parse the thesis note more precisely - matches = re.match( - r"^(?P[^:]+) : (?P[^,]+) ?[,:] (?P\d{4})( ; .*)?$", - value.get("a"), - ) - if matches: - if matches.group("degree"): - dissertation["degree"] = matches.group("degree") - if matches.group("grantingInstitution"): - dissertation["grantingInstitution"] = matches.group("grantingInstitution") - if matches.group("date"): - dissertation["date"] = matches.group("date") - - # Specific transformation for `hep bejune`, in order to fill out - # custom fields `Filière` (`customField1`) and `Titre obtenu` - # (`customField2`) - organisation = record.get("980__", {}).get("b") - if organisation and organisation.lower() == "hepbejune": - degree = matches.group("degree").lower() - custom_field1 = None - custom_field2 = None - if "mémoire de master spécialisé" in degree: - custom_field1 = "Enseignement spécialisé" - custom_field2 = "Master of Arts in special needs education, orientation enseignement spécialisé" - elif "mémoire de master" in degree: - custom_field1 = "Enseignement secondaire" - custom_field2 = "Master of Arts or of Science in Secondary Education" - elif "mémoire de bachelor" in degree: - custom_field1 = "Enseignement primaire" - custom_field2 = "Bachelor of Arts in Pre-Primary and Primary Education" - if custom_field1: - self["customField1"] = [custom_field1] - if custom_field2: - self["customField2"] = [custom_field2] - - # Try to get start date and store in provision activity - # 260$c and 269$c have priority to this date - if record.get("260__", {}).get("c") or record.get("269__", {}).get("c") or record.get("773__", {}).get("g"): - return - - # No date, skipping - if not value.get("9"): - return - - # Match either 2019 or 2019-01-01 - match = re.search(r"^[0-9]{4}(-[0-9]{2}-[0-9]{2})?$", value.get("9")) - - if not match: - return - - add_provision_activity_start_date(self, value.get("9")) - - return - - -@overdo.over("dissertation", "^508..") -@utils.ignore_value -def marc21_to_dissertation_field_508(self, key, value): - """Extract dissertation note.""" - if not value.get("a"): - return - - dissertation = self.get("dissertation", {}) - dissertation["jury_note"] = value.get("a") - - self["dissertation"] = dissertation - - return - - -@overdo.over("usageAndAccessPolicy", "^540..") -@utils.ignore_value -def marc21_to_usage_and_access_policy(self, key, value): - """Extract usage and access policy.""" - if not value.get("a"): - return None - - return {"label": value.get("a"), "license": "License undefined"} - - -@overdo.over("contribution", "^100..") -@utils.ignore_value -def marc21_to_contribution_field_100(self, key, value): - """Extract contribution from field 100.""" - if not value.get("a"): - return - - contribution = self.get("contribution", []) - - data = { - "agent": {"type": "bf:Person", "preferred_name": value.get("a")}, - "role": ["cre"], - } - - # Affiliation - if value.get("u"): - data["affiliation"] = value.get("u") - - # Date of birth - date of death - date_of_birth, date_of_death = overdo.extract_date(value.get("d")) - - if date_of_birth: - data["agent"]["date_of_birth"] = date_of_birth - - if date_of_death: - data["agent"]["date_of_death"] = date_of_death - - contribution.append(data) - self["contribution"] = contribution - - return - - -@overdo.over("contribution", "^700..") -@utils.for_each_value -@utils.ignore_value -def marc21_to_contribution_field_700(self, key, value): - """Extract contribution from field 100.""" - if not value.get("a"): - return - - contribution = self.get("contribution", []) - - role = overdo.get_contributor_role(value.get("e")) - - if not role: - raise Exception(f"No role found for contributor {value}") - - data = { - "agent": {"type": "bf:Person", "preferred_name": value.get("a")}, - "role": [role], - } - - # Affiliation - if value.get("u"): - data["affiliation"] = value.get("u") - - # Date of birth - date of death - date_of_birth, date_of_death = overdo.extract_date(value.get("d")) - - if date_of_birth: - data["agent"]["date_of_birth"] = date_of_birth - - if date_of_death: - data["agent"]["date_of_death"] = date_of_death - - contribution.append(data) - self["contribution"] = contribution - - return - - -@overdo.over("contribution", "^710..") -@utils.for_each_value -@utils.ignore_value -def marc21_to_contribution_field_710(self, key, value): - """Extract contribution from field 710.""" - if not value.get("a"): - return - - contribution = self.get("contribution", []) - contribution.append( - { - "agent": {"type": "bf:Organization", "preferred_name": value.get("a")}, - "role": ["ctb"], - } - ) - self["contribution"] = contribution - - return - - -@overdo.over("contribution", "^711..") -@utils.for_each_value -@utils.ignore_value -def marc21_to_contribution_field_711(self, key, value): - """Extract contribution from field 711.""" - if not value.get("a"): - return - - contribution = self.get("contribution", []) - - data = { - "agent": {"type": "bf:Meeting", "preferred_name": value.get("a")}, - "role": ["cre"], - } - - # Place - if value.get("c"): - data["agent"]["place"] = value.get("c") - - # Date - if value.get("d"): - data["agent"]["date"] = value.get("d") - - # Number - if value.get("n"): - data["agent"]["number"] = value.get("n") - - contribution.append(data) - self["contribution"] = contribution - - return - - -@overdo.over("customField1", "^918..") -@utils.ignore_value -def marc21_to_faculty_and_department(self, key, value): - """Extract faculty and department for UNIFR.""" - record = overdo.blob_record - org = record.get("980__", {}).get("b") - if org and org == "UNIFR": - faculty = value.get("a") - if faculty: - self["customField1"] = [faculty] - dep = value.get("c") - if dep: - self["customField2"] = [dep] - return - - -@overdo.over("partOf", "^773..") -@utils.for_each_value -@utils.ignore_value -def marc21_to_part_of(self, key, value): - """Extract related document for record.""" - if not value.get("g"): - return None - - # Split value for getting numbering values - numbering = value.get("g").split("/") - - # Numbering year - if not numbering[0]: - return None - - data = {"numberingYear": numbering[0]} - - # Volume - if len(numbering) > 1 and numbering[1]: - data["numberingVolume"] = numbering[1] - - # Issue - if len(numbering) > 2 and numbering[2]: - data["numberingIssue"] = numbering[2] - - # Pages - if len(numbering) > 3 and numbering[3] and numbering[3] != "-": - data["numberingPages"] = numbering[3] - - document = {} - - # Title is found - if value.get("t"): - document["title"] = value.get("t") - - # Contribution - if value.get("c"): - document["contribution"] = list(value.get("c").split(";")) - - record = overdo.blob_record - - # Publication based on document sub type - sub_type = record.get("980__", {}).get("f") - if value.get("d") or sub_type == "ART_INBOOK": - document["publication"] = {} - - if value.get("d"): - document["publication"]["statement"] = value.get("d") - - if sub_type == "ART_INBOOK": - document["publication"]["startDate"] = numbering[0] - - # If no field 260$c or 269$c, store start date - if not record.get("260__", {}).get("c") and not record.get("269__", {}).get("c"): - add_provision_activity_start_date(self, numbering[0]) - - if document: - data["document"] = document - - return data - - -def add_provision_activity_start_date(data, date): - """Add start date for provision activity. - - :param data: Data dictionary. - :param date: Date to add. - """ - provisition_activity = data.get("provisionActivity", []) - - def get_publication(): - """Get stored publication.""" - for key, item in enumerate(provisition_activity): - if item["type"] == "bf:Publication": - return provisition_activity.pop(key) - - return {"type": "bf:Publication", "startDate": None} - - publication = get_publication() - - publication["startDate"] = date - - # Inject publiction into provision activity - provisition_activity.append(publication) - - # Re-assign provisionActivity - data["provisionActivity"] = provisition_activity diff --git a/sonar/modules/documents/dojson/rerodoc/model.py_hesso b/sonar/modules/documents/dojson/rerodoc/model.py_hesso deleted file mode 100644 index 436f009eb..000000000 --- a/sonar/modules/documents/dojson/rerodoc/model.py_hesso +++ /dev/null @@ -1,1168 +0,0 @@ -# Swiss Open Access Repository -# Copyright (C) 2021 RERO -# -# This program is free software: you can redistribute it and/or modify -# it under the terms of the GNU Affero General Public License as published by -# the Free Software Foundation, version 3 of the License. -# -# This program is distributed in the hope that it will be useful, -# but WITHOUT ANY WARRANTY; without even the implied warranty of -# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the -# GNU Affero General Public License for more details. -# -# You should have received a copy of the GNU Affero General Public License -# along with this program. If not, see . - -"""RERODOC MARC21 model definition.""" - -import hashlib -import re - -from dojson import utils -from flask import current_app -from invenio_db import db - -from sonar.modules.collections.api import Record as CollectionRecord -from sonar.modules.documents.dojson.rerodoc.overdo import Overdo -from sonar.modules.organisations.api import OrganisationRecord -from sonar.modules.subdivisions.api import Record as SubdivisionRecord -from sonar.modules.subdivisions.api import RecordSearch -from sonar.modules.utils import remove_trailing_punctuation - -overdo = Overdo() - -TYPE_MAPPINGS = { - 'PREPRINT|': 'coar:c_816b', - 'POSTPRINT|ART_JOURNAL': 'coar:c_6501', - 'POSTPRINT|ART_INBOOK': 'coar:c_3248', - 'POSTPRINT|ART_INPROC': 'coar:c_5794', - 'BOOK|': 'coar:c_2f33', - 'DISSERTATION|DISS_MASTER': 'coar:c_bdcc', - 'DISSERTATION|DISS_BACHELOR': 'coar:c_7a1f', - 'DISSERTATION|DISS_CONT_EDU': 'advanced_studies_thesis', - 'THESIS|': 'coar:c_db06', - 'THESIS|TH_PHD': 'coar:c_db06', - 'THESIS|TH_HABILIT': 'coar:c_46ec', - 'MAP|': 'coar:c_12cc', - 'REPORT|': 'coar:c_18ws', - 'NEWSPAPER|': 'coar:c_2fe3', - 'JOURNAL|': 'coar:c_0640', - 'PRINT_MEDIA|': 'coar:c_2fe3', - 'AUDIO|': 'coar:c_18cc', - 'IMAGE|': 'coar:c_ecc8', - 'PARTITION|': 'coar:c_18cw' -} - - -@overdo.over('type', '^980') -@utils.ignore_value -def marc21_to_type_and_organisation(self, key, value): - """Get document type and organisation from 980 field.""" - subdivision_name = None - record = overdo.blob_record - - # organisation - if value.get('b'): - organisation = value.get('b').lower() - - # Specific transformation for `unisi`, because the real acronym is - # `usi`. - if organisation == 'unisi': - organisation = 'usi' - - # Specific transformation for `hep bejune`, in order to fill out - # custom fields `Filière` (`customField1`) and `Titre obtenu` - # (`customField2`) - if organisation == 'hepbejune' and value.get('f'): - document_subtype = value.get('f').lower() - customField1 = '' - customField2 = '' - if document_subtype == 'diss_bachelor': - customField1 = 'Enseignement primaire' - customField2 = 'Bachelor of Arts in Pre-Primary and Primary Education' - elif document_subtype == 'diss_master': - customField1 = 'Enseignement secondaire' - customField2 = 'Master of Arts or of Science in Secondary Education' - if customField1: - self['customField1'] = [customField1] - if customField2: - self['customField2'] = [customField2] - - # Specific transformation for `hepfr`, which should be imported as - # a faculty AND a subdivision of FOLIA/unifr - if organisation == 'hepfr': - organisation = 'unifr' - self['organisation'] = [{ - '$ref': - OrganisationRecord.get_ref_link('organisations', organisation) - }] - # `hepfr` is a faculty of FOLIA/unifr - self['customField1'] = ['HEP|PH FR'] - # `hepfr` is a subdivision of FOLIA/unifr - subdivision_name = 'HEP Fribourg' - # Store subdivision - # TODO: avoid possible clashes between subdivision - # names in different languages - result = RecordSearch()\ - .filter('term', organisation__pid=organisation)\ - .filter('term', name__value__raw=subdivision_name)\ - .source(includes='pid').scan() - subdivision_pid = next(result).pid - # If the subdivision exists, assign it to the record - if subdivision_pid: - self['subdivisions'] = [{ - '$ref': - SubdivisionRecord.get_ref_link('subdivisions', subdivision_pid) - }] - - # Specific transformation for `hesso` - 11 institutions in RERO DOC - # are imported to a new `hesso` institution in SONAR - if organisation in [ - 'heascne', 'heasju', 'hedsfr', 'hegge', 'hedsge', - 'hetsge', 'hetsvs', 'hegtvs', 'hedsvs', 'heivs', 'esdsvs' - ]: - # include the original organisation code (from RERO DOC) as a note, - # for later reference - notes = [] - if 'notes' in self: - notes = self['notes'] - institution = None - code = None - - # replace the original RERO DOC institution codes and names - # by their current equivalent - # NB: records from 'esdsvs' are imported as 'hetsvs' - inst_mapping = { - 'heascne': ('hearc-cor', 'Haute Ecole Arc Conservation-Restauration Neuchâtel'), - 'heasju': ('hearc-san', 'Haute Ecole Arc Santé'), - 'hedsfr': ('hedsfr', 'Haute école de santé Fribourg'), - 'hegge': ('hegge', 'Haute école de gestion Genève'), - 'hedsge': ('hedsge', 'Haute école de santé Genève'), - 'hetsge': ('hetsge', 'Haute école de travail social Genève'), - 'hetsvs': ('hetsvs', 'Haute Ecole de Travail Social Valais'), - 'esdsvs': ('hetsvs', 'Haute Ecole de Travail Social Valais'), - 'hegtvs': ('hegvs', 'Haute Ecole de Gestion Valais'), - 'hedsvs': ('hedsvs', 'Haute Ecole de Santé Valais'), - 'heivs': ('heivs', 'Haute Ecole d\'Ingénierie Valais') - } - (code, institution) = inst_mapping.get(organisation, (None, None)) - - # reject deprecated institution names - depracated_names = ( - 'Haute Ecole Arc Conservation-Restauration', - 'Haute Ecole de Santé de Fribourg', - 'Haute école de gestion de Genève', - 'Haute école de travail social de Genève', - 'Haute Ecole de Travail Social', - 'Haute Ecole de Gestion & Tourisme', - 'Haute Ecole d\'Ingénierie', - ) - - # include the institution name as note - if not institution: - # get it from source MARC if not found in the dict - institution = record.get('919__', {}).get('a') - if (institution and institution not in notes and - institution not in depracated_names): - notes.append(institution) - # include faculty and department information as notes, as well - faculty = record.get('918__', {}).get('a') - if (faculty and faculty not in notes and - faculty not in depracated_names): - notes.append(faculty) - department = record.get('918__', {}).get('c') - if department and department not in notes: - notes.append(department) - # add a note with a code identifiying the source institution - notes.append('hesso:' + code) - self['notes'] = notes - # from now on, the organisation code is `hesso` - organisation = 'hesso' - - - # Specific transformation for `bpuge` and `mhnge`, because the real - # acronym is `vge`. - subdivision_name = None - - if organisation in [ - 'bpuge', 'mhnge', 'baage', 'bmuge', 'imvge', 'mhsge' - ]: - subdivision_name = 'bge' if organisation == 'bpuge' else organisation - organisation = 'vge' - - if organisation not in overdo.registererd_organisations: - overdo.create_organisation(organisation) - overdo.registererd_organisations.append(organisation) - - self['organisation'] = [{ - '$ref': - OrganisationRecord.get_ref_link('organisations', organisation) - }] - - if subdivision_name: - # Store subdivision - hash_key = hashlib.md5( - (subdivision_name + organisation).encode()).hexdigest() - - subdivision_pid = SubdivisionRecord.get_pid_by_hash_key(hash_key) - - # No subdivision found - if not subdivision_pid: - subdivision = SubdivisionRecord.create({ - 'name': [{ - 'language': 'eng', - 'value': subdivision_name - }], - 'organisation': { - '$ref': - OrganisationRecord.get_ref_link( - 'organisations', organisation) - }, - 'hashKey': - hash_key - }) - subdivision.commit() - subdivision.reindex() - db.session.commit() - subdivision_pid = subdivision['pid'] - - self['subdivisions'] = [{ - '$ref': - SubdivisionRecord.get_ref_link('subdivisions', subdivision_pid) - }] - - # get doc type by mapping - key = value.get('a', '') + '|' + value.get('f', '') - if key not in TYPE_MAPPINGS: - current_app.logger.warning(f'Document type not found in mapping for type "{key}"') - return None - - # Store types to records - self['documentType'] = TYPE_MAPPINGS[key] - - return None - - -@overdo.over('language', '^041') -@utils.for_each_value -@utils.ignore_value -def marc21_to_language(self, key, value): - """Get languages.""" - if not value.get('a'): - return None - - language = self.get('language', []) - - codes = utils.force_list(value.get('a')) - - for code in codes: - language.append({'type': 'bf:Language', 'value': code}) - - self['language'] = language - - return None - - -@overdo.over('title', '^245..') -@utils.for_each_value -@utils.ignore_value -def marc21_to_title_245(self, key, value): - """Get title.""" - main_title = value.get('a') - language = value.get('9', 'eng') - subtitle = value.get('b') - - if not main_title: - return None - - title = { - 'type': 'bf:Title', - 'mainTitle': [{ - 'value': main_title.rstrip(':'), - 'language': language - }] - } - - if subtitle: - title['subtitle'] = [{'value': subtitle, 'language': language}] - - return title - - -@overdo.over('title', '^246..') -@utils.for_each_value -@utils.ignore_value -def marc21_to_title_246(self, key, value): - """Get title.""" - main_title = value.get('a') - language = value.get('9', 'eng') - - if not main_title: - return None - - title = self.get('title', [{'type': 'bf:Title', 'mainTitle': []}]) - - # Add title 246 to last title in mainTitle propert - title[-1]['mainTitle'].append({'value': main_title, 'language': language}) - - self['title'] = title - - return None - - -@overdo.over('editionStatement', '^250..') -@utils.ignore_value -def marc21_to_edition_statement(self, key, value): - """Get edition statement data.""" - if not value.get('a'): - return None - - editionStatement = { - 'editionDesignation': { - 'value': value.get('a') - } - } - if value.get('b'): - editionStatement['responsibility'] = { - 'value': value.get('b') - } - return editionStatement - - -@overdo.over('provisionActivity', '^260..') -@utils.for_each_value -@utils.ignore_value -def marc21_to_provision_activity_field_260(self, key, value): - """Get provision activity data from field 260.""" - provision_activity = self.get('provisionActivity', []) - - # Only if there is a date - if value.get('c'): - publication = {'type': 'bf:Publication', 'statement': []} - - # Place - if value.get('a'): - publication['statement'].append({ - 'type': - 'bf:Place', - 'label': [{ - 'value': value.get('a') - }] - }) - - # Agent - if value.get('b'): - publication['statement'].append({ - 'type': - 'bf:Agent', - 'label': [{ - 'value': remove_trailing_punctuation(value.get('b')) - }] - }) - - years = value.get('c').split('-') - - # Start date - if years and re.match(r'^\d{4}$', years[0]): - publication['startDate'] = years[0] - - publication['statement'].append({ - 'type': - 'Date', - 'label': [{ - 'value': value.get('c') - }] - }) - - # End date - if len(years) > 1 and re.match(r'^\d{4}$', years[1]): - publication['endDate'] = years[1] - - provision_activity.append(publication) - - # Manufacture - if value.get('e') or value.get('f'): - manufacture = {'type': 'bf:Manufacture', 'statement': []} - - if value.get('e'): - manufacture['statement'].append({ - 'type': - 'bf:Place', - 'label': [{ - 'value': remove_trailing_punctuation(value.get('e')) - }] - }) - - if value.get('f'): - manufacture['statement'].append({ - 'type': - 'bf:Agent', - 'label': [{ - 'value': value.get('f') - }] - }) - - provision_activity.append(manufacture) - - # Re-assign provision activity - if provision_activity: - self['provisionActivity'] = provision_activity - - return None - - -@overdo.over('provisionActivity', '^269..') -@utils.ignore_value -def marc21_to_provision_activity_field_269(self, key, value): - """Get provision activity data from field 269.""" - # 260$c has priority to this date - if overdo.blob_record.get('260__', {}).get('c'): - return None - - # No date, skipping - if not value.get('c'): - return None - - # Assign start date - match = re.search(r'^[0-9]{4}(-[0-9]{2}-[0-9]{2})?$', value.get('c')) - - # Date does not match "YYYY" or "YYYY-MM-DD" - if not match: - return None - - add_provision_activity_start_date(self, value.get('c')) - - return None - - -@overdo.over('formats', '^300..') -@utils.ignore_value -def marc21_to_description(self, key, value): - """Get extent, otherMaterialCharacteristics, formats. - - extent: 300$a (the first one if many) - otherMaterialCharacteristics: 300$b (the first one if many) - formats: 300 [$c repetitive] - """ - if value.get('a'): - if not self.get('extent'): - self['extent'] = remove_trailing_punctuation( - overdo.not_repetitive(value, 'a')) - - if value.get('b'): - if self.get('otherMaterialCharacteristics', []) == []: - self['otherMaterialCharacteristics'] = remove_trailing_punctuation( - overdo.not_repetitive(value, 'b')) - - if value.get('c'): - formats = self.get('formats') - - if not formats: - data = value.get('c') - formats = list(utils.force_list(data)) - - return formats - - return None - - -@overdo.over('series', '^490..') -@utils.for_each_value -@utils.ignore_value -def marc21_to_series(self, key, value): - """Get series. - - series.name: [490$a repetitive] - series.number: [490$v repetitive] - """ - series = {} - - name = value.get('a') - if name: - series['name'] = ', '.join(utils.force_list(name)) - - number = value.get('v') - if number: - series['number'] = ', '.join(utils.force_list(number)) - - return series - - -@overdo.over('abstracts', '^520..') -@utils.for_each_value -@utils.ignore_value -def marc21_to_abstract(self, key, value): - """Get abstract.""" - abstract = value.get('a') - language = value.get('9', 'eng') - - if not abstract: - return None - - if language == 'fr': - language = 'fre' - - abstracts_data = self.get('abstracts', []) - abstracts_data.append({'value': abstract, 'language': language}) - - self['abstracts'] = abstracts_data - - return None - - -@overdo.over('identifiedBy', '001') -@utils.ignore_value -def marc21_to_identified_by_from_001(self, key, value): - """Get identifier from field 001.""" - identified_by = self.get('identifiedBy', []) - - identified_by.append({ - 'type': 'bf:Local', - 'source': 'RERO DOC', - 'value': value - }) - - return identified_by - - -@overdo.over('identifiedBy', '^020..') -@utils.ignore_value -def marc21_to_identified_by_from_020(self, key, value): - """Get identifier from field 020.""" - identified_by = self.get('identifiedBy', []) - - if not value.get('a'): - return None - - identified_by.append({'type': 'bf:Isbn', 'value': value.get('a')}) - - return identified_by - - -@overdo.over('identifiedBy', '^0247.') -@utils.ignore_value -def marc21_to_identified_by_from_024(self, key, value): - """Get identifier from field 024.""" - identified_by = self.get('identifiedBy', []) - - if not value.get('a') or value.get('2') != 'urn': - return None - - identified_by.append({'type': 'bf:Urn', 'value': value.get('a')}) - - return identified_by - - -@overdo.over('identifiedBy', '^027..') -@utils.ignore_value -def marc21_to_identified_by_from_027(self, key, value): - """Get identifier from field 027.""" - identified_by = self.get('identifiedBy', []) - - if not value.get('a'): - return None - - identified_by.append({'type': 'bf:Strn', 'value': value.get('a')}) - - return identified_by - - -@overdo.over('identifiedBy', '^035..') -@utils.ignore_value -def marc21_to_identified_by_from_035(self, key, value): - """Get identifier from field 035.""" - identified_by = self.get('identifiedBy', []) - - if not value.get('a'): - return None - - identified_by.append({ - 'type': 'bf:Local', - 'source': 'RERO', - 'value': value.get('a') - }) - - return identified_by - - -@overdo.over('identifiedBy', '^037..') -@utils.ignore_value -def marc21_to_identified_by_from_037(self, key, value): - """Get identifier from field 037.""" - identified_by = self.get('identifiedBy', []) - - if not value.get('a'): - return None - - identified_by.append({ - 'type': - 'bf:Local', - 'source': - 'Swissbib', - 'value': - value.get('a').replace('swissbib.ch:', '').strip() - }) - - return identified_by - - -@overdo.over('identifiedBy', '^088..') -@utils.ignore_value -def marc21_to_identified_by_from_088(self, key, value): - """Get identifier from field 088.""" - identified_by = self.get('identifiedBy', []) - - if not value.get('a'): - return None - - identified_by.append({'type': 'bf:ReportNumber', 'value': value.get('a')}) - - return identified_by - - -@overdo.over('identifiedBy', '^091..') -@utils.ignore_value -def marc21_to_identified_by_from_091(self, key, value): - """Get identifier from field 091.""" - identified_by = self.get('identifiedBy', []) - - if not value.get('a') or value.get('b') != 'pmid': - return None - - identified_by.append({ - 'type': 'bf:Local', - 'value': value.get('a'), - 'source': 'PMID' - }) - - return identified_by - - -@overdo.over('notes', '^500..') -@utils.for_each_value -@utils.ignore_value -def marc21_to_notes(self, key, value): - """Get notes.""" - return overdo.not_repetitive(value, 'a') - - -@overdo.over('subjects', '^600..|695..') -@utils.for_each_value -@utils.ignore_value -def marc21_to_subjects(self, key, value): - """Get subjects.""" - if not value.get('a'): - return None - - subject_values = [] - - for item in value.get('a').split(' ; '): - if item: - subject_values.append(item) - - subjects = {'label': {'value': subject_values}} - - # If field is 695 and no language is available - if key == '695__': - if not value.get('9'): - return None - - subjects['label']['language'] = value.get('9') - - # If field is 600 and no source is available - if key == '600__': - if not value.get('2'): - return None - - subjects['source'] = value.get('2') - - return subjects - - -@overdo.over('files', '^856..') -@utils.for_each_value -@utils.ignore_value -def marc21_to_files(self, key, value): - """Get files.""" - key = value.get('f') - url = value.get('u') - mime_type = value.get('q', 'text/plain') - - if not key or not url: - return None - - # TODO: Check why this type of file exists. Real example with rerodoc ID - # 29085 - if mime_type == 'pdt/download': - current_app.logger.warning( - f"File {key} for record {self['identifiedBy']} has a strange pdt/download mime " - "type, skipping import of file..." - ) - return None - - url = url.strip() - - # Retreive file order - # If order not set we put a value to 99 for easily point theses files - order = 99 - if value.get('y'): - match = re.search(r'order:([0-9]+)$', value.get('y')) - if match: - order = int(match.group(1)) - - data = { - 'key': key, - 'url': url, - 'label': value.get('z', key), - 'type': 'file', - 'order': order - } - - return data - - -@overdo.over('otherEdition', '^775..') -@utils.for_each_value -@utils.ignore_value -def marc21_to_other_edition(self, key, value): - """Get other edition.""" - electronic_locator = value.get('o') - public_note = value.get('g') - - if not electronic_locator or not public_note: - return None - - # if the value matches a DOI, apply `identifiedBy[type:bf:Doi]` - matches = re.search(r'(?P10\.\d{4,9}/[-._;()/:a-zA-Z0-9]+)', value.get('o')) - if matches and matches.group('doi'): - identified_by = self.get('identifiedBy', []) - identified_by.append({ - 'type': 'bf:Doi', - 'value': matches.group('doi') - }) - self['identifiedBy'] = identified_by - return None - else: - return { - 'document': { - 'electronicLocator': electronic_locator - }, - 'publicNote': public_note - } - - -@overdo.over('collections', '^982..') -@utils.for_each_value -@utils.ignore_value -def marc21_to_specific_collection(self, key, value): - """Extract collection for record.""" - if not value.get('a'): - return None - - # No organisation found, the collection is not imported. - if not self.get('organisation'): - return None - - organisation_pid = OrganisationRecord.get_pid_by_ref_link( - self['organisation'][0]['$ref']) - - hash_key = hashlib.md5( - (value.get('a') + organisation_pid).encode()).hexdigest() - - collection_pid = CollectionRecord.get_pid_by_hash_key(hash_key) - - # No collection found - if not collection_pid: - collection = CollectionRecord.create({ - 'name': [{ - 'language': 'eng', - 'value': value.get('a') - }], - 'organisation': { - '$ref': self['organisation'][0]['$ref'] - }, - 'hashKey': - hash_key - }) - collection.commit() - collection.reindex() - db.session.commit() - collection_pid = collection['pid'] - - return { - '$ref': CollectionRecord.get_ref_link('collections', collection_pid) - } - - -@overdo.over('classification', '^080..') -@utils.for_each_value -@utils.ignore_value -def marc21_to_classification_field_080(self, key, value): - """Get classification data from field 080.""" - if not value.get('a'): - return None - - return { - 'type': 'bf:ClassificationUdc', - 'classificationPortion': value.get('a') - } - - -@overdo.over('classification', '^084..') -@utils.for_each_value -@utils.ignore_value -def marc21_to_classification_field_084(self, key, value): - """Get classification data from field 084.""" - if not value.get('a') or value.get('2') != 'ddc': - return None - - return { - 'type': 'bf:ClassificationDdc', - 'classificationPortion': value.get('a') - } - - -@overdo.over('contentNote', '^505..') -@utils.for_each_value -@utils.ignore_value -def marc21_to_content_note(self, key, value): - """Extract content note for record.""" - return value.get('a') - - -@overdo.over('dissertation', '^502..') -@utils.ignore_value -def marc21_to_dissertation_field_502(self, key, value): - """Extract dissertation degree.""" - record = overdo.blob_record - if value.get('a'): - dissertation = self.get('dissertation', {}) - dissertation['degree'] = value.get('a') - self['dissertation'] = dissertation - - # try to parse the thesis note more precisely - matches = re.match(r'^(?P[^:]+) : (?P[^,]+) ?[,:] (?P\d{4})( ; .*)?$', value.get('a')) - if matches: - if matches.group("degree"): - dissertation['degree'] = matches.group("degree") - if matches.group("grantingInstitution"): - dissertation['grantingInstitution'] = matches.group("grantingInstitution") - if matches.group("date"): - dissertation['date'] = matches.group("date") - - # Specific transformation for `hep bejune`, in order to fill out - # custom fields `Filière` (`customField1`) and `Titre obtenu` - # (`customField2`) - organisation = record.get('980__', {}).get('b') - if (organisation and organisation.lower() == 'hepbejune'): - degree = matches.group("degree").lower() - customField1 = None - customField2 = None - if 'mémoire de master spécialisé' in degree: - customField1 = 'Enseignement spécialisé' - customField2 = 'Master of Arts in special needs ' \ - 'education, orientation enseignement spécialisé' - elif 'mémoire de master' in degree: - customField1 = 'Enseignement secondaire' - customField2 = 'Master of Arts or of Science ' \ - 'in Secondary Education' - elif 'mémoire de bachelor' in degree: - customField1 = 'Enseignement primaire' - customField2 = 'Bachelor of Arts in Pre-Primary and ' \ - 'Primary Education' - if customField1: - self['customField1'] = [customField1] - if customField2: - self['customField2'] = [customField2] - - # Try to get start date and store in provision activity - # 260$c and 269$c have priority to this date - if (record.get('260__', {}).get('c') or record.get('269__', {}).get('c') or - record.get('773__', {}).get('g')): - return None - - # No date, skipping - if not value.get('9'): - return None - - # Match either 2019 or 2019-01-01 - match = re.search(r'^[0-9]{4}(-[0-9]{2}-[0-9]{2})?$', value.get('9')) - - if not match: - return None - - add_provision_activity_start_date(self, value.get('9')) - - return None - - -@overdo.over('dissertation', '^508..') -@utils.ignore_value -def marc21_to_dissertation_field_508(self, key, value): - """Extract dissertation note.""" - if not value.get('a'): - return None - - dissertation = self.get('dissertation', {}) - dissertation['jury_note'] = value.get('a') - - self['dissertation'] = dissertation - - return None - - -@overdo.over('usageAndAccessPolicy', '^540..') -@utils.ignore_value -def marc21_to_usage_and_access_policy(self, key, value): - """Extract usage and access policy.""" - if not value.get('a'): - return None - - return {'label': value.get('a'), 'license': 'License undefined'} - - -@overdo.over('contribution', '^100..') -@utils.ignore_value -def marc21_to_contribution_field_100(self, key, value): - """Extract contribution from field 100.""" - if not value.get('a'): - return None - - contribution = self.get('contribution', []) - - data = { - 'agent': { - 'type': 'bf:Person', - 'preferred_name': value.get('a') - }, - 'role': ['cre'] - } - - # Affiliation - if value.get('u'): - data['affiliation'] = value.get('u') - - # Date of birth - date of death - date_of_birth, date_of_death = overdo.extract_date(value.get('d')) - - if date_of_birth: - data['agent']['date_of_birth'] = date_of_birth - - if date_of_death: - data['agent']['date_of_death'] = date_of_death - - contribution.append(data) - self['contribution'] = contribution - - return None - - -@overdo.over('contribution', '^700..') -@utils.for_each_value -@utils.ignore_value -def marc21_to_contribution_field_700(self, key, value): - """Extract contribution from field 100.""" - if not value.get('a'): - return None - - contribution = self.get('contribution', []) - - role = overdo.get_contributor_role(value.get('e')) - - if not role: - raise Exception(f'No role found for contributor {value}') - - data = { - 'agent': { - 'type': 'bf:Person', - 'preferred_name': value.get('a') - }, - 'role': [role] - } - - # Affiliation - if value.get('u'): - data['affiliation'] = value.get('u') - - # Date of birth - date of death - date_of_birth, date_of_death = overdo.extract_date(value.get('d')) - - if date_of_birth: - data['agent']['date_of_birth'] = date_of_birth - - if date_of_death: - data['agent']['date_of_death'] = date_of_death - - contribution.append(data) - self['contribution'] = contribution - - return None - - -@overdo.over('contribution', '^710..') -@utils.for_each_value -@utils.ignore_value -def marc21_to_contribution_field_710(self, key, value): - """Extract contribution from field 710.""" - if not value.get('a'): - return None - - contribution = self.get('contribution', []) - contribution.append({ - 'agent': { - 'type': 'bf:Organization', - 'preferred_name': value.get('a') - }, - 'role': ['ctb'] - }) - self['contribution'] = contribution - - return None - - -@overdo.over('contribution', '^711..') -@utils.for_each_value -@utils.ignore_value -def marc21_to_contribution_field_711(self, key, value): - """Extract contribution from field 711.""" - if not value.get('a'): - return None - - contribution = self.get('contribution', []) - - data = { - 'agent': { - 'type': 'bf:Meeting', - 'preferred_name': value.get('a') - }, - 'role': ['cre'] - } - - # Place - if value.get('c'): - data['agent']['place'] = value.get('c') - - # Date - if value.get('d'): - data['agent']['date'] = value.get('d') - - # Number - if value.get('n'): - data['agent']['number'] = value.get('n') - - contribution.append(data) - self['contribution'] = contribution - - return None - - -@overdo.over('customField1', '^918..') -@utils.ignore_value -def marc21_to_faculty_and_department(self, key, value): - """Extract faculty and department for UNIFR.""" - record = overdo.blob_record - org = record.get('980__', {}).get('b') - if org and org == 'UNIFR': - faculty = value.get('a') - if faculty: - self['customField1'] = [faculty] - dep = value.get('c') - if dep: - self['customField2'] = [dep] - return None - - -@overdo.over('partOf', '^773..') -@utils.for_each_value -@utils.ignore_value -def marc21_to_part_of(self, key, value): - """Extract related document for record.""" - if not value.get('g'): - return None - - # Split value for getting numbering values - numbering = value.get('g').split('/') - - # Numbering year - if not numbering[0]: - return None - - data = {'numberingYear': numbering[0]} - - # Volume - if len(numbering) > 1 and numbering[1]: - data['numberingVolume'] = numbering[1] - - # Issue - if len(numbering) > 2 and numbering[2]: - data['numberingIssue'] = numbering[2] - - # Pages - if len(numbering) > 3 and numbering[3] and numbering[3] != '-': - data['numberingPages'] = numbering[3] - - document = {} - - # Title is found - if value.get('t'): - document['title'] = value.get('t') - - # Contribution - if value.get('c'): - contributors = [] - for contributor in value.get('c').split(';'): - if contributor: - contributors.append(contributor) - - if contributors: - document['contribution'] = contributors - - record = overdo.blob_record - - # Publication based on document sub type - sub_type = record.get('980__', {}).get('f') - if value.get('d') or sub_type == 'ART_INBOOK': - document['publication'] = {} - - if value.get('d'): - document['publication']['statement'] = value.get('d') - - if sub_type == 'ART_INBOOK': - document['publication']['startDate'] = numbering[0] - - # If no field 260$c or 269$c, store start date - if (not record.get('260__', {}).get('c') and - not record.get('269__', {}).get('c')): - add_provision_activity_start_date(self, numbering[0]) - - if document: - data['document'] = document - - return data - - -def add_provision_activity_start_date(data, date): - """Add start date for provision activity. - - :param data: Data dictionary. - :param date: Date to add. - """ - provisition_activity = data.get('provisionActivity', []) - - def get_publication(): - """Get stored publication.""" - for key, item in enumerate(provisition_activity): - if item['type'] == 'bf:Publication': - return provisition_activity.pop(key) - - return {'type': 'bf:Publication', 'startDate': None} - - publication = get_publication() - - publication['startDate'] = date - - # Inject publiction into provision activity - provisition_activity.append(publication) - - # Re-assign provisionActivity - data['provisionActivity'] = provisition_activity diff --git a/sonar/modules/documents/dojson/rerodoc/overdo.py b/sonar/modules/documents/dojson/rerodoc/overdo.py deleted file mode 100644 index 3e635871b..000000000 --- a/sonar/modules/documents/dojson/rerodoc/overdo.py +++ /dev/null @@ -1,141 +0,0 @@ -# Swiss Open Access Repository -# Copyright (C) 2021 RERO -# -# This program is free software: you can redistribute it and/or modify -# it under the terms of the GNU Affero General Public License as published by -# the Free Software Foundation, version 3 of the License. -# -# This program is distributed in the hope that it will be useful, -# but WITHOUT ANY WARRANTY; without even the implied warranty of -# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the -# GNU Affero General Public License for more details. -# -# You should have received a copy of the GNU Affero General Public License -# along with this program. If not, see . - -"""Overdo specialized class for RERODOC DOJSON transformation.""" - -from flask import current_app - -from sonar.modules.documents.dojson.overdo import Overdo as BaseOverdo -from sonar.modules.organisations.api import OrganisationRecord - - -class Overdo(BaseOverdo): - """Overdo specialized class for RERODOC DOJSON transformation.""" - - registererd_organisations = [] - - @staticmethod - def create_organisation(organisation_key): - """Create organisation if not existing and return it. - - :param str organisation_key: Key (PID) of the organisation. - """ - if not organisation_key: - raise Exception("No key provided") - - # Get organisation record from database - organisation = OrganisationRecord.get_record_by_pid(organisation_key) - - if not organisation: - # Create organisation record - organisation = OrganisationRecord.create( - { - "code": organisation_key, - "name": organisation_key, - "isShared": False, - "isDedicated": False, - }, - with_bucket=True, - dbcommit=True, - ) - organisation.reindex() - - def do(self, blob, ignore_missing=True, exception_handlers=None): - """Do transformation.""" - result = super().do(blob, ignore_missing=ignore_missing, exception_handlers=exception_handlers) - - # Verify data integrity - self.verify(result) - - # Add default license if not set. - if not result.get("usageAndAccessPolicy"): - default_license = "License undefined" - if ( - result.get("organisation") - and result["organisation"][0]["$ref"] == "https://sonar.ch/api/organisations/hepbejune" - ): - default_license = "CC BY-NC-SA" - - result["usageAndAccessPolicy"] = {"license": default_license} - - return result - - def get_contributor_role(self, role_700=None): - """Return contributor role. - - :param role_700: String, role found in field 700$e - :returns: String containing the mapped role or None - """ - if role_700 in ["Dir.", "Codir."]: - return "dgs" - - if role_700 == "Libr./Impr.": - return "prt" - - if role_700 == "joint author": - return "cre" - - if not role_700: - doc_type = self.blob_record.get("980__", {}).get("a") - - if not doc_type: - return None - - if doc_type in ["PREPRINT", "POSTPRINT", "DISSERTATION", "REPORT"]: - return "cre" - - if doc_type in [ - "BOOK", - "THESIS", - "MAP", - "JOURNAL", - "PARTITION", - "AUDIO", - "IMAGE", - ]: - return "ctb" - - return None - - def verify(self, result): - """Verify record data integrity after processing. - - :param result: Record data - """ - - def is_pa_mandatory(): - """Check if record types make provision activity mandatory.""" - document_type = result.get("documentType") - - if not document_type: - return True - - return document_type not in [ - "coar:c_beb9", - "coar:c_6501", - "coar:c_998f", - "coar:c_dcae04bc", - "coar:c_3e5a", - "coar:c_5794", - "coar:c_6670", - ] - - self.result_ok = True - - # Check if provision activity is set, but it's optional depending - # on record types - if "provisionActivity" not in result and is_pa_mandatory(): - self.result_ok = False - current_app.logger.warning(f"No provision activity found in record {result}") diff --git a/sonar/modules/documents/loaders/schemas/factory.py b/sonar/modules/documents/loaders/schemas/factory.py index 738b33cab..8eff08f00 100644 --- a/sonar/modules/documents/loaders/schemas/factory.py +++ b/sonar/modules/documents/loaders/schemas/factory.py @@ -1,5 +1,5 @@ # Swiss Open Access Repository -# Copyright (C) 2021 RERO +# Copyright (C) 2021-2026 RERO # # This program is free software: you can redistribute it and/or modify # it under the terms of the GNU Affero General Public License as published by @@ -17,14 +17,12 @@ from .archive_ouverte_unige import ArchiveOuverteUnigeSchema from .boris import BorisSchema -from .rerodoc import RerodocSchema class LoaderSchemaFactory: """Factory for creating a loader schema.""" schemas = { - "rerodoc": RerodocSchema, "archive_ouverte_unige": ArchiveOuverteUnigeSchema, "boris": BorisSchema, } diff --git a/sonar/modules/documents/loaders/schemas/rerodoc.py b/sonar/modules/documents/loaders/schemas/rerodoc.py deleted file mode 100644 index cf27d2266..000000000 --- a/sonar/modules/documents/loaders/schemas/rerodoc.py +++ /dev/null @@ -1,61 +0,0 @@ -# Swiss Open Access Repository -# Copyright (C) 2021 RERO -# -# This program is free software: you can redistribute it and/or modify -# it under the terms of the GNU Affero General Public License as published by -# the Free Software Foundation, version 3 of the License. -# -# This program is distributed in the hope that it will be useful, -# but WITHOUT ANY WARRANTY; without even the implied warranty of -# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the -# GNU Affero General Public License for more details. -# -# You should have received a copy of the GNU Affero General Public License -# along with this program. If not, see . - -"""RERODOC schema.""" - -from invenio_records_rest.schemas.fields import SanitizedUnicode -from marshmallow import fields, pre_dump - -from sonar.modules.documents.dojson.rerodoc.model import overdo - -from .marc21 import Marc21Schema - - -class RerodocSchema(Marc21Schema): - """RERODOC schema.""" - - documentType = SanitizedUnicode() - title = fields.List(fields.Dict()) - partOf = fields.List(fields.Dict()) - abstracts = fields.List(fields.Dict()) - contribution = fields.List(fields.Dict()) - organisation = fields.List(fields.Dict()) - language = fields.List(fields.Dict()) - copyrightDate = fields.List(fields.String()) - editionStatement = fields.Dict() - provisionActivity = fields.List(fields.Dict()) - extent = SanitizedUnicode() - otherMaterialCharacteristics = SanitizedUnicode() - formats = fields.List(SanitizedUnicode()) - additionalMaterials = SanitizedUnicode() - series = fields.List(fields.Dict()) - notes = fields.List(fields.String()) - identifiedBy = fields.List(fields.Dict()) - subjects = fields.List(fields.Dict()) - classification = fields.List(fields.Dict()) - collections = fields.List(fields.Dict()) - dissertation = fields.Dict() - otherEdition = fields.List(fields.Dict()) - usageAndAccessPolicy = fields.Dict() - files = fields.List(fields.Dict()) - subdivisions = fields.List(fields.Dict()) - customField1 = fields.List(fields.String()) - customField2 = fields.List(fields.String()) - customField3 = fields.List(fields.String()) - - @pre_dump - def process(self, obj, **kwargs): - """All the process is done by overdo.""" - return overdo.do(obj) diff --git a/sonar/modules/documents/minters.py b/sonar/modules/documents/minters.py index 378def10e..07bcff134 100644 --- a/sonar/modules/documents/minters.py +++ b/sonar/modules/documents/minters.py @@ -1,5 +1,5 @@ # Swiss Open Access Repository -# Copyright (C) 2021 RERO +# Copyright (C) 2021-2026 RERO # # This program is free software: you can redistribute it and/or modify # it under the terms of the GNU Affero General Public License as published by @@ -19,7 +19,6 @@ from invenio_oaiserver.minters import oaiid_minter from invenio_oaiserver.provider import OAIIDProvider from invenio_pidstore.errors import PIDAlreadyExists, PIDDoesNotExistError -from invenio_pidstore.models import PersistentIdentifier, PIDStatus from sonar.modules.ark.api import Ark @@ -48,26 +47,12 @@ def id_minter(record_uuid, data, provider, pid_key="pid", object_type="rec"): def external_minters(record_uuid, data, pid_key="pid"): """External minters. - RERO DOC and ARK. + ARK. :param record_uuid: Record UUID. :param data: Record data. :param pid_key: PID key. - :returns: Created PID object. """ - for identifier in data.get("identifiedBy", []): - if identifier.get("source") == "RERO DOC": - try: - pid = PersistentIdentifier.create( - "rerod", - identifier["value"], - object_type="rec", - object_uuid=record_uuid, - status=PIDStatus.REGISTERED, - ) - pid.redirect(PersistentIdentifier.get("doc", data[pid_key])) - except PIDAlreadyExists: - pass new_data = current_app.extensions.get("invenio-records").replace_refs(data.get("organisation", [{}])[0]) naan = new_data.get("arkNAAN") diff --git a/sonar/theme/views.py b/sonar/theme/views.py index db310bac7..4e6fcf38f 100644 --- a/sonar/theme/views.py +++ b/sonar/theme/views.py @@ -1,5 +1,5 @@ # Swiss Open Access Repository -# Copyright (C) 2021 RERO +# Copyright (C) 2021-2026 RERO # # This program is free software: you can redistribute it and/or modify # it under the terms of the GNU Affero General Public License as published by @@ -42,14 +42,12 @@ from flask_menu import current_menu from invenio_jsonschemas import current_jsonschemas from invenio_jsonschemas.errors import JSONSchemaNotFound -from invenio_pidstore.models import PersistentIdentifier from sonar.jsonschemas.factory import JSONSchemaFactory from sonar.modules.collections.permissions import ( RecordPermission as CollectionPermission, ) from sonar.modules.deposits.permissions import DepositPermission -from sonar.modules.documents.api import DocumentRecord from sonar.modules.documents.permissions import DocumentPermission from sonar.modules.organisations.api import OrganisationSearch from sonar.modules.organisations.permissions import OrganisationPermission @@ -124,55 +122,6 @@ def error(): raise Exception("this is an error for test purposes") -@blueprint.route("/rerodoc/") -@blueprint.route("/rerodoc//files/") -def rerodoc_redirection(pid, filename=None): - """Redirection to document with identifier from RERODOC. - - :param pid: PID from RERODOC. - :returns: A redirection to record's detail page or 404 if not found. - """ - try: - pid = PersistentIdentifier.get("rerod", pid) - except Exception: - abort(404) - - # Files URLs does not contains view - if filename: - return redirect( - url_for( - "invenio_records_ui.doc_files", - pid_value=pid.get_redirect().pid_value, - filename=filename, - ) - ) - doc_pid = pid.get_redirect().pid_value - doc = DocumentRecord.get_record_by_pid(doc_pid) - if doc: - doc = doc.resolve() - orgs = doc.get("organisation", []) - # In case of multiple organisations we redirect to the global view - if len(orgs) == 1: - org = orgs.pop() - # Only for dedicated or shared - if org.get("isDedicated") or org.get("isShared"): - return redirect( - url_for( - "invenio_records_ui.doc", - view=org.get("code"), - pid_value=pid.get_redirect().pid_value, - ) - ) - global_view = current_app.config.get("SONAR_APP_DEFAULT_ORGANISATION") - return redirect( - url_for( - "invenio_records_ui.doc", - view=global_view, - pid_value=pid.get_redirect().pid_value, - ) - ) - - @blueprint.route("/manage/") @blueprint.route("/manage/") @can_access_manage_view diff --git a/tests/conftest.py b/tests/conftest.py index 58fb43c89..b4a0acf82 100644 --- a/tests/conftest.py +++ b/tests/conftest.py @@ -1,5 +1,5 @@ # Swiss Open Access Repository -# Copyright (C) 2021 RERO +# Copyright (C) 2021-2026 RERO # # This program is free software: you can redistribute it and/or modify # it under the terms of the GNU Affero General Public License as published by @@ -433,7 +433,6 @@ def document_json(app, db, bucket_location, organisation): return { "identifiedBy": [ {"value": "oai:doc.rero.ch:20050302172954-WU", "type": "bf:Identifier"}, - {"value": "111111", "type": "bf:Local", "source": "RERO DOC"}, {"value": "R003415713", "type": "bf:Local", "source": "RERO"}, ], "language": [{"value": "eng", "type": "bf:Language"}], diff --git a/tests/ui/conftest.py b/tests/ui/conftest.py index 9d2c75082..4df80e3c4 100644 --- a/tests/ui/conftest.py +++ b/tests/ui/conftest.py @@ -1,5 +1,5 @@ # Swiss Open Access Repository -# Copyright (C) 2021 RERO +# Copyright (C) 2021-2026 RERO # # This program is free software: you can redistribute it and/or modify # it under the terms of the GNU Affero General Public License as published by @@ -23,7 +23,7 @@ @pytest.fixture(scope="module") def harvested_record(): - """Return test XML output file path.""" + """Return test XML record.""" with open(os.path.join(os.path.dirname(__file__), "data", "harvested_record.xml")) as file: yield file.read() diff --git a/tests/ui/data/harvested_record.xml b/tests/ui/data/harvested_record.xml index b269ec2a0..b8a95c62b 100644 --- a/tests/ui/data/harvested_record.xml +++ b/tests/ui/data/harvested_record.xml @@ -1,128 +1,6 @@ - -
- oai:doc.rero.ch:20120503160026-MV - 2013-06-17T11:29:40Z - postprint - cdu1 - rero_explore - article - unifr -
- - - 00000coc 2200000uu 4500 - 29085 - 20150420164351.0 - - oai:doc.rero.ch:20120503160026-MV - article - rero_explore - cdu1 - postprint - unifr - - - eng - - - 1 - - - Betschart, Christof - - - Was ist Lebenskraft? - eng - Edith Steins anthropologischer Beitrag in 'Psychische - Kausalität' (Teil 2) - - - What is Lifeforce? Edith Stein's Anthropological - Contribution in 'Psychic Causality' (Part 2) - eng - - - Dieser Folge-Artikel im Edith Stein Jahrbuch 2010 fragt nach - der Lebenskraft in Edith Steins Abhandlung „Psychische Kausalität“ (1918 - geschrieben, 1922 publiziert). Es geht besonders um den Wandel der Lebenskraft - im Hinblick auf ihre Umsetzung im sinnlichen und geistigen Bereich, sowie ihre - Erneuerung durch die Welt der Werte, durch die intersubjektiven Beziehungen und - durch Gott. Ein eigener Abschnitt ist der Frage nach ganz aufgebrauchter - Lebenskraft gewidmet. Im Ausblick wird die Lebenskraft im Sinne eines Potenzials - zu sinnlicher und geistiger Betätigung interpretiert und eine Auseinandersetzung - mit der Tiefenpsychologie Sigmund Freuds angestrebt. - ger - - - force vitale ; phénoménologie ; conscience phénoménologique - ; réalité psychique ; idéalisme-réalisme ; dépression ; neurologie ; psychologie - des profondeurs ; vécu religieux ; monde des valeurs ; Edith Stein ; Edmund - Husserl - fre - - - Lebenskraft ; Betätigungspotenzial ; Phänomenologie ; - Bewusstsein ; Psyche ; Idealismus-Realismus ; Depression ; Neurologie ; - Tiefenpsychologie ; religiöses Erlebnis ; Wertewelt ; Burnout ; Edith Stein ; - Edmund Husserl - ger - - - vital force ; life force ; phenomenology ; phenomenological - conscience ; psyche ; idealism-realism ; depression ; neurology ; psychology of - Sigmund Freud ; world of values ; burnout ; Edith Stein ; Edmund Husserl - eng - - - forza vitale ; fenomenologia ; coscienza fenomenologica ; - psiche ; idealismo-realismo ; depressione ; neurologia ; psicologia freudiana ; - vissuto religioso ; mondo dei valori ; burnout ; Edith Stein ; Edmund Husserl - ita - - - Edith Stein Jahrbuch - 2010/16//33-64 - Echter - - - Betschart_Jahrbuch_2010.pdf - pdt/download - 126302 - - http://doc.rero.ch/lm.php?url=1000,43,2,20120503160026-MV/Betschart_Jahrbuch_2010.pdf - 2012-05-03 16:03:50 - Texte intégral - - - Betschart_Jahrbuch_2010.pdf - application/pdf - 126302 - - http://doc.rero.ch/record/29085/files/Betschart_Jahrbuch_2010.pdf - order:1 - Texte intégral - - - Faculté de théologie - Décanat, Av. de l'Europe 20, 1700 Fribourg - - - Université de Fribourg - Fribourg - doc.support@rero.ch - - - POSTPRINT - UNIFR - ART_JOURNAL - - - 20120503160026-MV - - - + + 123456 + + Test record + diff --git a/tests/ui/documents/cli/test_documents_cli_ark.py b/tests/ui/documents/cli/test_documents_cli_ark.py index abcb302c9..a7aed23aa 100644 --- a/tests/ui/documents/cli/test_documents_cli_ark.py +++ b/tests/ui/documents/cli/test_documents_cli_ark.py @@ -13,7 +13,7 @@ # You should have received a copy of the GNU Affero General Public License # along with this program. If not, see . -"""Test documents RERODOC cli commands.""" +"""Test ARK cli commands.""" from click.testing import CliRunner diff --git a/tests/ui/documents/cli/test_documents_cli_rerodoc.py b/tests/ui/documents/cli/test_documents_cli_rerodoc.py deleted file mode 100644 index d359e4345..000000000 --- a/tests/ui/documents/cli/test_documents_cli_rerodoc.py +++ /dev/null @@ -1,57 +0,0 @@ -# Swiss Open Access Repository -# Copyright (C) 2021 RERO -# -# This program is free software: you can redistribute it and/or modify -# it under the terms of the GNU Affero General Public License as published by -# the Free Software Foundation, version 3 of the License. -# -# This program is distributed in the hope that it will be useful, -# but WITHOUT ANY WARRANTY; without even the implied warranty of -# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the -# GNU Affero General Public License for more details. -# -# You should have received a copy of the GNU Affero General Public License -# along with this program. If not, see . - -"""Test documents RERODOC cli commands.""" - -from click.testing import CliRunner - -import sonar.modules.documents.cli.rerodoc as cli - - -def test_update_file_permissions(app, script_info, document_with_file): - """Test update file permissions.""" - runner = CliRunner() - - # Not existing input file - result = runner.invoke( - cli.update_file_permissions, - ["./tests/ui/documents/data/not_existing.csv", "-c", "1"], - obj=script_info, - ) - assert "Error: Invalid value for 'PERMISSIONS_FILE'" in result.output - - # Invalid input file - result = runner.invoke( - cli.update_file_permissions, - ["./tests/ui/documents/data/invalid.csv", "-c", "1"], - obj=script_info, - ) - assert "CSV file seems to be not well formatted." in result.output - - # File cannot be parsed - result = runner.invoke( - cli.update_file_permissions, - ["./tests/ui/documents/data/permissions_file.pdf", "-c", "1"], - obj=script_info, - ) - assert "An error occured during file process" in result.output - - # OK - result = runner.invoke( - cli.update_file_permissions, - ["./tests/ui/documents/data/permissions_file.csv", "-c", "1"], - obj=script_info, - ) - assert "Process finished" in result.output diff --git a/tests/ui/documents/dojson/rerodoc/test_rerodoc_model.py b/tests/ui/documents/dojson/rerodoc/test_rerodoc_model.py deleted file mode 100644 index 50b6bcf15..000000000 --- a/tests/ui/documents/dojson/rerodoc/test_rerodoc_model.py +++ /dev/null @@ -1,2587 +0,0 @@ -# Swiss Open Access Repository -# Copyright (C) 2021 RERO -# -# This program is free software: you can redistribute it and/or modify -# it under the terms of the GNU Affero General Public License as published by -# the Free Software Foundation, version 3 of the License. -# -# This program is distributed in the hope that it will be useful, -# but WITHOUT ANY WARRANTY; without even the implied warranty of -# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the -# GNU Affero General Public License for more details. -# -# You should have received a copy of the GNU Affero General Public License -# along with this program. If not, see . - -"""DOJSON module tests.""" - -import pytest -from dojson.contrib.marc21.utils import create_record - -from sonar.modules.documents.dojson.rerodoc.model import overdo - - -def test_marc21_to_type_and_organisation(app, bucket_location): - """Test type and organisation.""" - - # Type only - marc21xml = """ - - - BOOK - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert data.get("documentType") == "coar:c_2f33" - assert not data.get("organisation") - - # Type and organisation - marc21xml = """ - - - BOOK - TEST - - - 1966 - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert data.get("documentType") == "coar:c_2f33" - assert data.get("organisation") == [{"$ref": "https://sonar.ch/api/organisations/test"}] - - # Type, subtype and organisation - marc21xml = """ - - - POSTPRINT - TEST - ART_JOURNAL - - - 1966 - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert data.get("documentType") == "coar:c_6501" - assert data.get("organisation") == [{"$ref": "https://sonar.ch/api/organisations/test"}] - - # Organisation only - marc21xml = """ - - - TEST - - - 1966 - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert not data.get("documentType") - assert data.get("organisation") == [{"$ref": "https://sonar.ch/api/organisations/test"}] - - # Specific conversion for unisi - marc21xml = """ - - - UNISI - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert not data.get("documentType") - assert data.get("organisation") == [{"$ref": "https://sonar.ch/api/organisations/usi"}] - - # Specific conversion for bpuge - marc21xml = """ - - - BPUGE - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert not data.get("documentType") - assert data.get("organisation") == [{"$ref": "https://sonar.ch/api/organisations/vge"}] - assert len(data["subdivisions"]) == 1 - - # Specific conversion for mhnge - marc21xml = """ - - - MHNGE - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert not data.get("documentType") - assert data.get("organisation") == [{"$ref": "https://sonar.ch/api/organisations/vge"}] - assert len(data["subdivisions"]) == 1 - - -def test_marc21_to_title_245(app): - """Test dojson marc21_to_title.""" - - # One title with subtitle - marc21xml = """ - - - Main title - eng - Subtitle - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert data.get("title") == [ - { - "type": "bf:Title", - "mainTitle": [{"value": "Main title", "language": "eng"}], - "subtitle": [{"value": "Subtitle", "language": "eng"}], - } - ] - - # Multiple titles with subtitles - marc21xml = """ - - - Main title - eng - Subtitle - - - Titre principal - fre - Sous-titre - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert data.get("title") == [ - { - "type": "bf:Title", - "mainTitle": [{"value": "Main title", "language": "eng"}], - "subtitle": [{"value": "Subtitle", "language": "eng"}], - }, - { - "type": "bf:Title", - "mainTitle": [{"value": "Titre principal", "language": "fre"}], - "subtitle": [{"value": "Sous-titre", "language": "fre"}], - }, - ] - - # One title without subtitle - marc21xml = """ - - - Main title - eng - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert data.get("title") == [{"type": "bf:Title", "mainTitle": [{"value": "Main title", "language": "eng"}]}] - - # No title - marc21xml = """ - - - eng - Subtitle - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert not data.get("title") - - # No language - marc21xml = """ - - - Main title - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert data.get("title") == [{"type": "bf:Title", "mainTitle": [{"value": "Main title", "language": "eng"}]}] - - # Multiple title with one without title - marc21xml = """ - - - Main title - eng - Subtitle - - - fre - Sous-titre - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert data.get("title") == [ - { - "type": "bf:Title", - "mainTitle": [{"value": "Main title", "language": "eng"}], - "subtitle": [{"value": "Subtitle", "language": "eng"}], - } - ] - - -def test_marc21_to_title_246(app): - """Test dojson marc21_to_title.""" - - # One title 246 without 245 - marc21xml = """ - - - Main title - eng - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert data.get("title") == [{"type": "bf:Title", "mainTitle": [{"value": "Main title", "language": "eng"}]}] - - # One title 246 without $a and without 245 - marc21xml = """ - - - eng - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert not data.get("title") - - # One title 246 without language and without 245 - marc21xml = """ - - - Main title - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert data.get("title") == [{"type": "bf:Title", "mainTitle": [{"value": "Main title", "language": "eng"}]}] - - # One title 246 with one 245 title - marc21xml = """ - - - Main title 245 - eng - - - Main title 246 - fre - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert data.get("title") == [ - { - "type": "bf:Title", - "mainTitle": [ - {"value": "Main title 245", "language": "eng"}, - {"value": "Main title 246", "language": "fre"}, - ], - } - ] - - # One title 246 with multiple 245 title - marc21xml = """ - - - Main title 245 1 - eng - - - Main title 245 2 - eng - - - Main title 246 - fre - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert data.get("title") == [ - { - "type": "bf:Title", - "mainTitle": [{"value": "Main title 245 1", "language": "eng"}], - }, - { - "type": "bf:Title", - "mainTitle": [ - {"value": "Main title 245 2", "language": "eng"}, - {"value": "Main title 246", "language": "fre"}, - ], - }, - ] - - -def test_marc21_to_language(app): - """Test language transformation.""" - # OK - marc21xml = """ - - - fre - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert data.get("language") == [{"type": "bf:Language", "value": "fre"}] - - # Multiple $a - marc21xml = """ - - - eng - fre - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert data.get("language") == [ - {"type": "bf:Language", "value": "eng"}, - {"type": "bf:Language", "value": "fre"}, - ] - - # Multiple 041 - marc21xml = """ - - - eng - - - fre - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert data.get("language") == [ - {"type": "bf:Language", "value": "eng"}, - {"type": "bf:Language", "value": "fre"}, - ] - - # Not $a - marc21xml = """ - - - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert not data.get("language") - - -def test_marc21_to_provision_activity_field_260(app): - """Test provision activity with field 260.""" - # OK - marc21xml = """ - - - Lausanne - 1798-1799 - Bulletin officiel du Directoire, - Lausanne : - Henri Vincent - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert data.get("provisionActivity") == [ - { - "type": "bf:Publication", - "startDate": "1798", - "endDate": "1799", - "statement": [ - {"label": [{"value": "Lausanne"}], "type": "bf:Place"}, - { - "label": [{"value": "Bulletin officiel du Directoire"}], - "type": "bf:Agent", - }, - {"label": [{"value": "1798-1799"}], "type": "Date"}, - ], - }, - { - "type": "bf:Manufacture", - "statement": [ - {"label": [{"value": "Lausanne"}], "type": "bf:Place"}, - {"label": [{"value": "Henri Vincent"}], "type": "bf:Agent"}, - ], - }, - ] - - # No start date --> throw error - marc21xml = """ - - - Lausanne - Bulletin officiel du Directoire, - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert not data.get("provisionActivity") - - # No provision activity and wrong type --> throw error - marc21xml = """ - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert not data.get("provisionActivity") - - # No provision activity and right types --> ok provision activity is not - # mandatory - marc21xml = """ - - - POSTPRINT - ART_JOURNAL - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert not data.get("provisionActivity") - - # Without end date - marc21xml = """ - - - Lausanne - 1798 - Bulletin officiel du Directoire, - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert data.get("provisionActivity")[0]["startDate"] == "1798" - assert "endDate" not in data.get("provisionActivity")[0] - - # Wrong start date - marc21xml = """ - - - Lausanne - [1798?] - Bulletin officiel du Directoire, - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert "startDate" not in data.get("provisionActivity")[0] - - # Wrong end date - marc21xml = """ - - - Lausanne - 1798- - Bulletin officiel du Directoire, - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert "endDate" not in data.get("provisionActivity")[0] - - -def test_marc21_to_provision_activity_field_269(app): - """Test provision activity with field 269.""" - # One field - marc21xml = """ - - - 1966 - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert data.get("provisionActivity") == [{"startDate": "1966", "type": "bf:Publication"}] - - # One field with full date - marc21xml = """ - - - 1966-01-01 - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert data.get("provisionActivity") == [{"startDate": "1966-01-01", "type": "bf:Publication"}] - - # Date does not match "YYYY" OR "YYYY-MM-DD" - marc21xml = """ - - - 1966-1999 - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert not data.get("provisionActivity") - - # Multiple fields - marc21xml = """ - - - 1966 - - - 2005 - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert data.get("provisionActivity") == [{"startDate": "2005", "type": "bf:Publication"}] - - # No field $c - marc21xml = """ - - - 1966 - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert not data.get("provisionActivity") - - -def test_marc21_to_provision_activity_all(app): - """Test provision activity with both 260 and 269 fields.""" - marc21xml = """ - - - Lausanne - 1798-1799 - Bulletin officiel du Directoire, - Lausanne : - Henri Vincent - - - 1700 - - - Thèse 2 - 2020 - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert data.get("provisionActivity") == [ - { - "type": "bf:Publication", - "startDate": "1798", - "endDate": "1799", - "statement": [ - {"label": [{"value": "Lausanne"}], "type": "bf:Place"}, - { - "label": [{"value": "Bulletin officiel du Directoire"}], - "type": "bf:Agent", - }, - {"label": [{"value": "1798-1799"}], "type": "Date"}, - ], - }, - { - "type": "bf:Manufacture", - "statement": [ - {"label": [{"value": "Lausanne"}], "type": "bf:Place"}, - {"label": [{"value": "Henri Vincent"}], "type": "bf:Agent"}, - ], - }, - ] - - -def test_marc21_to_edition_statement(app): - """Test edition statement dojson from field 250.""" - # OK - marc21xml = """ - - - Reproduction numérique - René Wetzel - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert data.get("editionStatement") == { - "editionDesignation": {"value": "Reproduction numérique"}, - "responsibility": {"value": "René Wetzel"}, - } - - # Without field $a - marc21xml = """ - - - René Wetzel - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert not data.get("editionStatement") - - # Without field $b - marc21xml = """ - - - Reproduction numérique - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert not data.get("editionStatement") - - # Multiple --> keep only one value - marc21xml = """ - - - Reproduction numérique 1 - John Doe - - - Reproduction numérique 2 - René Wetzel - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert data.get("editionStatement") == { - "editionDesignation": {"value": "Reproduction numérique 2"}, - "responsibility": {"value": "René Wetzel"}, - } - - -# extent: 300$a (the first one if many) -# otherMaterialCharacteristics: 300$b (the first one if many) -# formats: 300 [$c repetitive] -def test_marc21_to_description(app): - """Test dojson extent, otherMaterialCharacteristics, formats.""" - - marc21xml = """ - - - 116 p. - ill. - 22 cm - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert data.get("extent") == "116 p." - assert data.get("otherMaterialCharacteristics") == "ill." - assert data.get("formats") == ["22 cm"] - - marc21xml = """ - - - 116 p. - ill. - 22 cm - 12 x 15 - - - 200 p. - ill. - 19 cm - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert data.get("extent") == "116 p." - assert data.get("otherMaterialCharacteristics") == "ill." - assert data.get("formats") == ["22 cm", "12 x 15"] - - marc21xml = """ - - - 116 p. - ill. - 22 cm - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert data.get("extent") == "116 p." - assert data.get("otherMaterialCharacteristics") == "ill." - - -# series.name: [490$a repetitive] -# series.number: [490$v repetitive] -def test_marc21_to_series(app): - """Test dojson series.""" - - marc21xml = """ - - - Collection One - 5 - - - Collection Two - 123 - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert data.get("series") == [ - {"name": "Collection One", "number": "5"}, - {"name": "Collection Two", "number": "123"}, - ] - - -def test_marc21_to_abstract(app): - """Test dojson abstract.""" - - # One abstract without language - marc21xml = """ - - - Abstract - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert data.get("abstracts") == [{"value": "Abstract", "language": "eng"}] - - # One abstract with language - marc21xml = """ - - - Résumé - fre - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert data.get("abstracts") == [{"value": "Résumé", "language": "fre"}] - - # Multiple abstracts - marc21xml = """ - - - Abstract - eng - - - Résumé - fre - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert data.get("abstracts") == [ - {"value": "Abstract", "language": "eng"}, - {"value": "Résumé", "language": "fre"}, - ] - - # Without abstract - marc21xml = """ - - - eng - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert not data.get("abstracts") - - # Special case with lang --> fr - marc21xml = """ - - - Résumé - fr - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert data.get("abstracts") == [{"value": "Résumé", "language": "fre"}] - - -# notes: [500$a repetitive] -def test_marc21_to_notes(app): - """Test dojson notes.""" - - marc21xml = """ - - - note 1 - - - note 2 - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert data.get("notes") == ["note 1", "note 2"] - - -# subjects: 6xx [duplicates could exist between several vocabularies, -# if possible deduplicate] -def test_marc21_to_subjects(app): - """Test dojson subjects.""" - - marc21xml = """ - - - eng - subject 1 ; subject 2 - - - fre - sujet 1 ; sujet 2 - - - rero - subject 600 1 ; subject 600 2 - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert data.get("subjects") == [ - {"label": {"language": "eng", "value": ["subject 1", "subject 2"]}}, - {"label": {"language": "fre", "value": ["sujet 1", "sujet 2"]}}, - {"label": {"value": ["subject 600 1", "subject 600 2"]}, "source": "rero"}, - ] - - # 600 without $a - marc21xml = """ - - - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert not data.get("subjects") - - # 600 without source - marc21xml = """ - - - subject 600 1 ; subject 600 2 - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert not data.get("subjects") - - # 695 without language - marc21xml = """ - - - subject 1 ; subject 2 - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert not data.get("subjects") - - -def test_marc21_to_identified_by_from_001(app): - """Test identifiedBy from 001.""" - - marc21xml = """ - - 327171 - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert data.get("identifiedBy") == [{"type": "bf:Local", "source": "RERO DOC", "value": "327171"}] - - marc21xml = "" - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert not data.get("identifiedBy") - - -def test_marc21_to_identified_by_from_020(app): - """Test identifiedBy from 020.""" - - marc21xml = """ - - - 9783796539138 - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert data.get("identifiedBy") == [{"type": "bf:Isbn", "value": "9783796539138"}] - - # Without code $a - marc21xml = """ - - - 9783796539138 - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert not data.get("identifiedBy") - - -def test_marc21_to_identified_by_from_024(app): - """Test identifiedBy from 024.""" - - marc21xml = """ - - - urn:nbn:ch:rero-002-118667 - urn - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert data.get("identifiedBy") == [{"type": "bf:Urn", "value": "urn:nbn:ch:rero-002-118667"}] - - # Without code $a - marc21xml = """ - - - urn - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert not data.get("identifiedBy") - - # Without code $2 - marc21xml = """ - - - urn:nbn:ch:rero-002-118667 - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert not data.get("identifiedBy") - - # $2 is a falsy value - marc21xml = """ - - - urn:nbn:ch:rero-002-118667 - falsy_value - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert not data.get("identifiedBy") - - # Without ind1 == 7 - marc21xml = """ - - - urn:nbn:ch:rero-002-118667 - falsy_value - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert not data.get("identifiedBy") - - -def test_marc21_to_identified_by_from_027(app): - """Test identifiedBy from 027.""" - - marc21xml = """ - - - 9789027223951 - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert data.get("identifiedBy") == [{"type": "bf:Strn", "value": "9789027223951"}] - - # Without code $a - marc21xml = """ - - - 9789027223951 - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert not data.get("identifiedBy") - - -def test_marc21_to_identified_by_from_035(app): - """Test identifiedBy from 035.""" - - marc21xml = """ - - - R008966083 - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert data.get("identifiedBy") == [{"type": "bf:Local", "source": "RERO", "value": "R008966083"}] - - # Without code $a - marc21xml = """ - - - R008966083 - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert not data.get("identifiedBy") - - -def test_marc21_to_identified_by_from_037(app): - """Test identifiedBy from 037.""" - - marc21xml = """ - - - - swissbib.ch:(NATIONALLICENCE)springer-10.1007/s00209-014-1344-0 - - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert data.get("identifiedBy") == [ - { - "type": "bf:Local", - "source": "Swissbib", - "value": "(NATIONALLICENCE)springer-10.1007/s00209-014-1344-0", - } - ] - - # Without code $a - marc21xml = """ - - - - swissbib.ch:(NATIONALLICENCE)springer-10.1007/s00209-014-1344-0 - - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert not data.get("identifiedBy") - - -def test_marc21_to_identified_by_from_088(app): - """Test identifiedBy from 088.""" - - marc21xml = """ - - - 25 - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert data.get("identifiedBy") == [{"type": "bf:ReportNumber", "value": "25"}] - - # Without code $a - marc21xml = """ - - - 25 - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert not data.get("identifiedBy") - - -def test_marc21_to_identified_by_from_091(app): - """Test identifiedBy from 091.""" - - marc21xml = """ - - - 24638240 - pmid - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert data.get("identifiedBy") == [{"type": "bf:Local", "value": "24638240", "source": "PMID"}] - - # Without code $a - marc21xml = """ - - - pmid - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert not data.get("identifiedBy") - - # Without code $b - marc21xml = """ - - - 24638240 - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert not data.get("identifiedBy") - - # Invalid code $b - marc21xml = """ - - - 24638240 - fake - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert not data.get("identifiedBy") - - -def test_marc21_to_identified_by_full(app): - """Test full identified by.""" - marc21xml = """ - - 327171 - - 9783796539138 - - - urn:nbn:ch:rero-002-118667 - urn - - - 9789027223951 - - - R008966083 - - - - swissbib.ch:(NATIONALLICENCE)springer-10.1007/s00209-014-1344-0 - - - - 25 - - - 24638240 - pmid - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert data.get("identifiedBy") == [ - {"type": "bf:Local", "source": "RERO DOC", "value": "327171"}, - {"type": "bf:Isbn", "value": "9783796539138"}, - {"type": "bf:Urn", "value": "urn:nbn:ch:rero-002-118667"}, - {"type": "bf:Strn", "value": "9789027223951"}, - {"type": "bf:Local", "source": "RERO", "value": "R008966083"}, - { - "type": "bf:Local", - "source": "Swissbib", - "value": "(NATIONALLICENCE)springer-10.1007/s00209-014-1344-0", - }, - {"type": "bf:ReportNumber", "value": "25"}, - {"type": "bf:Local", "value": "24638240", "source": "PMID"}, - ] - - -def test_marc21_to_files(app): - """Test getting files from field 856.""" - # Only one file - marc21xml = """ - - - file.pdf - application/pdf - 1467377 - - http://some.url/file.pdf - - order:1 - Dépliant de l'exposition - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert len(data.get("files")) == 1 - assert data.get("files")[0]["key"] == "file.pdf" - assert data.get("files")[0]["url"] == "http://some.url/file.pdf" - assert data.get("files")[0]["label"] == "Dépliant de l'exposition" - assert data.get("files")[0]["order"] == 1 - - # Not key - marc21xml = """ - - - application/pdf - 1467377 - - http://some.url/file.pdf - - order:1 - Dépliant de l'exposition - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert not data.get("files") - - # Not URL - marc21xml = """ - - - file.pdf - application/pdf - 1467377 - order:1 - Dépliant de l'exposition - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert not data.get("files") - - # Wrong mime type - marc21xml = """ - - 327171 - - file.pdf - pdt/download - 1467377 - - http://some.url/file.pdf - - order:1 - Dépliant de l'exposition - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert not data.get("files") - - -def test_marc21_to_other_edition(app): - """Test other edition extraction.""" - # One other edition - marc21xml = """ - - - http://domain.com/url - version publiée - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert data.get("otherEdition") == [ - { - "document": {"electronicLocator": "http://domain.com/url"}, - "publicNote": "version publiée", - } - ] - - # Multiple other editions - marc21xml = """ - - - http://domain.com/url - version publiée - - - http://domain.com/url-2 - version publiée - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert data.get("otherEdition") == [ - { - "document": {"electronicLocator": "http://domain.com/url"}, - "publicNote": "version publiée", - }, - { - "document": {"electronicLocator": "http://domain.com/url-2"}, - "publicNote": "version publiée", - }, - ] - - # No electronic location - marc21xml = """ - - - version publiée - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert not data.get("otherEdition") - - # No public note - marc21xml = """ - - - http://domain.com/url - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert not data.get("otherEdition") - - # Incorrect DOIs - they do get collected in `otherEdition` - # instead of `identifiedBy` - marc21xml = """ - - - http://dx.doi.org/10.1130%2F0091-7613(2002)030%3C0655:CWCIAP%3E2.0.CO%3B2 - version publiée - - - http://dx.doi.org/0.1021/jp0558775 - version publiée - - - http://dx.doi.org/1017/S0031182010000296 - version publiée - - - http://dx.doi.org/1039/B926873A - version publiée - - - http://dx.doi.org/0.1016/j.str.2012.09.019 - version publiée - - - https://doi.org/10.1111%2Fj.1467-9280.2009.02364.x - version publiée - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert data.get("otherEdition") == [ - { - "document": { - "electronicLocator": "http://dx.doi.org/10.1130%2F0091-7613(2002)030%3C0655:CWCIAP%3E2.0.CO%3B2" - }, - "publicNote": "version publiée", - }, - { - "document": {"electronicLocator": "http://dx.doi.org/0.1021/jp0558775"}, - "publicNote": "version publiée", - }, - { - "document": {"electronicLocator": "http://dx.doi.org/1017/S0031182010000296"}, - "publicNote": "version publiée", - }, - { - "document": {"electronicLocator": "http://dx.doi.org/1039/B926873A"}, - "publicNote": "version publiée", - }, - { - "document": {"electronicLocator": "http://dx.doi.org/0.1016/j.str.2012.09.019"}, - "publicNote": "version publiée", - }, - { - "document": {"electronicLocator": "https://doi.org/10.1111%2Fj.1467-9280.2009.02364.x"}, - "publicNote": "version publiée", - }, - ] - assert not data.get("identifiedBy") - - # Well-formed DOIs - they get collected in `identifiedBy` - # instead of`otherEdition` - marc21xml = """ - - - http://dx.doi.org/10.1002/1521-3773(20020104)41:1 - version publiée - - - 10.1016/j.apergo.2008.03.002 - version publiée - - - : https://doi.pangaea.de/10.1594/PANGAEA.914883 - version publiée - - - https://www.brepolsonline.net/doi/abs/10.1484/J.BPM.5.110808 - version publiée - - - https://doi.org710.35662/unine-thesis-2747 - version publiée - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert not data.get("otherEdition") - assert data.get("identifiedBy") == [ - {"type": "bf:Doi", "value": "10.1002/1521-3773(20020104)41:1"}, - {"type": "bf:Doi", "value": "10.1016/j.apergo.2008.03.002"}, - {"type": "bf:Doi", "value": "10.1594/PANGAEA.914883"}, - {"type": "bf:Doi", "value": "10.1484/J.BPM.5.110808"}, - {"type": "bf:Doi", "value": "10.35662/unine-thesis-2747"}, - ] - - -def test_marc21_to_specific_collection(app, bucket_location): - """Test extracting collection from file 982.""" - # No code a - marc21xml = """ - - - Treize étoiles - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert not data.get("collections") - - # Not field 982 - marc21xml = """ - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert not data.get("collections") - - # No organisation - marc21xml = """ - - - Treize étoiles - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert not data.get("collections") - - # OK - marc21xml = """ - - - test-org - - - Treize étoiles - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert data["collections"] - - # Multiple collections - marc21xml = """ - - - test-org - - - Collection 1 - - - Collection 2 - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert len(data["collections"]) == 2 - - -def test_marc21_to_classification_from_field_080(app): - """Test classification from field 080.""" - # OK - marc21xml = """ - - - 82 - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert data.get("classification") == [{"type": "bf:ClassificationUdc", "classificationPortion": "82"}] - - # Not $a record - marc21xml = """ - - - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert not data.get("classification") - - -def test_marc21_to_classification_from_field_084(app): - """Test classification from field 084.""" - # OK - marc21xml = """ - - - 610 - ddc - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert data.get("classification") == [{"type": "bf:ClassificationDdc", "classificationPortion": "610"}] - - # Not $a record - marc21xml = """ - - - ddc - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert not data.get("classification") - - # Not $2 record - marc21xml = """ - - - 610 - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert not data.get("classification") - - -def test_marc21_to_classification_from_all(app): - """Test classification from all field.""" - marc21xml = """ - - - 82 - - - 610 - ddc - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert data.get("classification") == [ - {"type": "bf:ClassificationUdc", "classificationPortion": "82"}, - {"type": "bf:ClassificationDdc", "classificationPortion": "610"}, - ] - - -def test_marc21_to_content_note(app): - """Test extracting content notes from field 505.""" - # OK - marc21xml = """ - - - La comtesse de Mortane - - - Voyage de campagne - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert data.get("contentNote") == ["La comtesse de Mortane", "Voyage de campagne"] - - # No field $a - marc21xml = """ - - - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert not data.get("contentNote") - - -def test_marc21_to_dissertation_field_502(app): - """Test extracting dissertation degree from field 502.""" - # OK - marc21xml = """ - - - Thèse de doctorat - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert data.get("dissertation") == {"degree": "Thèse de doctorat"} - - # thesis note decomposition - marc21xml = """ - - Thèse de doctorat : Université de Fribourg, 2010 ; Nr. 1671 - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert data.get("dissertation") == { - "degree": "Thèse de doctorat", - "grantingInstitution": "Université de Fribourg", - "date": "2010", - } - - # Multiple --> keep always last value - marc21xml = """ - - - Thèse de doctorat - - - Last degree - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert data.get("dissertation") == {"degree": "Last degree"} - - # Without $a - marc21xml = """ - - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert not data.get("dissertation") - - -def test_marc21_to_dissertation_field_508(app): - """Test extracting dissertation notes from field 508.""" - # OK - marc21xml = """ - - - Magna cum laude - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert data.get("dissertation") == {"jury_note": "Magna cum laude"} - - # Multiple - marc21xml = """ - - - Note 1 - - - Note 2 - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert data.get("dissertation") == {"jury_note": "Note 2"} - - # Without $a - marc21xml = """ - - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert not data.get("dissertation") - - -def test_marc21_to_dissertation_all(app): - """Test extracting dissertation notes and degree.""" - # OK - marc21xml = """ - - - Thèse de doctorat - - - Magna cum laude - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert data.get("dissertation") == { - "degree": "Thèse de doctorat", - "jury_note": "Magna cum laude", - } - - -def test_marc21_to_usage_and_access_policy(app): - """Test extracting usage and access policy.""" - # OK - marc21xml = """ - - - Springer-Verlag Berlin - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert data.get("usageAndAccessPolicy") == { - "label": "Springer-Verlag Berlin", - "license": "License undefined", - } - - # Multiple - marc21xml = """ - - - Usage 1 - - - Usage 2 - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert data.get("usageAndAccessPolicy") == { - "label": "Usage 2", - "license": "License undefined", - } - - # Without $a - marc21xml = """ - - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert data.get("usageAndAccessPolicy") == {"license": "License undefined"} - - # Without 540 - marc21xml = """ - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert data.get("usageAndAccessPolicy") == {"license": "License undefined"} - - -def test_marc21_to_contribution_field_100(app): - """Test extracting contribution from field 100.""" - # OK - marc21xml = """ - - - Romagnani, Andrea - 1980-2010 - University of Bern, Switzerland - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert data.get("contribution") == [ - { - "agent": { - "type": "bf:Person", - "preferred_name": "Romagnani, Andrea", - "date_of_birth": "1980", - "date_of_death": "2010", - }, - "role": ["cre"], - "affiliation": "University of Bern, Switzerland", - } - ] - - # Not $a - marc21xml = """ - - - 1980-2010 - University of Bern, Switzerland - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert not data.get("contribution") - - # Date does not match - marc21xml = """ - - - Romagnani, Andrea - zzzz - University of Bern, Switzerland - - - """ - marc21json = create_record(marc21xml) - with pytest.raises(Exception) as exception: - data = overdo.do(marc21json) - assert str(exception.value) == 'Date "zzzz" is not recognized' - - # Only birth date - marc21xml = """ - - - Romagnani, Andrea - 1980- - University of Bern, Switzerland - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert data.get("contribution") == [ - { - "agent": { - "type": "bf:Person", - "preferred_name": "Romagnani, Andrea", - "date_of_birth": "1980", - }, - "role": ["cre"], - "affiliation": "University of Bern, Switzerland", - } - ] - - # Only birth date, variant 2 - marc21xml = """ - - - Romagnani, Andrea - 1980 - University of Bern, Switzerland - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert data.get("contribution") == [ - { - "agent": { - "type": "bf:Person", - "preferred_name": "Romagnani, Andrea", - "date_of_birth": "1980", - }, - "role": ["cre"], - "affiliation": "University of Bern, Switzerland", - } - ] - - # Only birth date, variant 3 - marc21xml = """ - - - Romagnani, Andrea - 1980-04-04 - University of Bern, Switzerland - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert data.get("contribution") == [ - { - "agent": { - "type": "bf:Person", - "preferred_name": "Romagnani, Andrea", - "date_of_birth": "1980-04-04", - }, - "role": ["cre"], - "affiliation": "University of Bern, Switzerland", - } - ] - - -def test_marc21_to_contribution_field_700(app): - """Test extracting contribution from field 700.""" - # OK - marc21xml = """ - - - Piguet, Etienne - 1980-2010 - Dir. - University of Bern, Switzerland - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert data.get("contribution") == [ - { - "agent": { - "type": "bf:Person", - "preferred_name": "Piguet, Etienne", - "date_of_birth": "1980", - "date_of_death": "2010", - }, - "role": ["dgs"], - "affiliation": "University of Bern, Switzerland", - } - ] - - # Not $a - marc21xml = """ - - - 1980-2010 - Dir. - University of Bern, Switzerland - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert not data.get("contribution") - - # Only birth date - marc21xml = """ - - - Piguet, Etienne - 1980- - Dir. - University of Bern, Switzerland - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert data.get("contribution") == [ - { - "agent": { - "type": "bf:Person", - "preferred_name": "Piguet, Etienne", - "date_of_birth": "1980", - }, - "role": ["dgs"], - "affiliation": "University of Bern, Switzerland", - } - ] - - # Role from field 980, but not existing - marc21xml = """ - - - Piguet, Etienne - 1980- - University of Bern, Switzerland - - - """ - marc21json = create_record(marc21xml) - with pytest.raises(Exception) as exception: - data = overdo.do(marc21json) - assert str(exception.value).startswith("No role found for contributor") - - # Role from field 980, but 980 is not mapped - marc21xml = """ - - - Piguet, Etienne - - - NOT EXISTING - - - """ - marc21json = create_record(marc21xml) - with pytest.raises(Exception) as exception: - data = overdo.do(marc21json) - assert str(exception.value).startswith("No role found for contributor") - - # Role from field 980, but $a is not existing - marc21xml = """ - - - Piguet, Etienne - - - - - """ - marc21json = create_record(marc21xml) - with pytest.raises(Exception) as exception: - data = overdo.do(marc21json) - assert str(exception.value).startswith("No role found for contributor") - - # Role from field 980, found 'cre' - marc21xml = """ - - - Piguet, Etienne - - - POSTPRINT - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert data.get("contribution")[0]["role"] == ["cre"] - - # Role from field 980, found 'ctb' - marc21xml = """ - - - Piguet, Etienne - - - BOOK - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert data.get("contribution")[0]["role"] == ["ctb"] - - # Role 'prt' found - marc21xml = """ - - - Piguet, Etienne - Libr./Impr. - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert data.get("contribution")[0]["role"] == ["prt"] - - # Role for joint author - marc21xml = """ - - - Piguet, Etienne - joint author - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert data.get("contribution")[0]["role"] == ["cre"] - - -def test_marc21_to_contribution_field_710(app): - """Test extracting contribution from field 710.""" - # OK - marc21xml = """ - - - Musée d'art et d'histoire - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert data.get("contribution") == [ - { - "agent": { - "type": "bf:Organization", - "preferred_name": "Musée d'art et d'histoire", - }, - "role": ["ctb"], - } - ] - - # No $a - marc21xml = """ - - - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert not data.get("contribution") - - -def test_marc21_to_contribution_field_711(app): - """Test extracting contribution from field 711.""" - # OK - marc21xml = """ - - - Theologisches Forum Christentum - Stuttgart-Hohenheim - 2004 - 2 - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert data.get("contribution") == [ - { - "agent": { - "type": "bf:Meeting", - "preferred_name": "Theologisches Forum Christentum", - "place": "Stuttgart-Hohenheim", - "date": "2004", - "number": "2", - }, - "role": ["cre"], - } - ] - - # Not $a - marc21xml = """ - - - Stuttgart-Hohenheim - 2004 - 2 - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert not data.get("contribution") - - -def test_marc21_to_part_of(app): - """Test extracting is part of from field 773.""" - # With sub type of ART INBOOK - marc21xml = """ - - - Belser, Eva Maria - Mehr oder weniger Staat? - 2015/// - Stämpfli Verlag, Bern - - - ART_INBOOK - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert data.get("partOf") == [ - { - "numberingYear": "2015", - "document": { - "title": "Mehr oder weniger Staat?", - "contribution": ["Belser, Eva Maria"], - "publication": { - "statement": "Stämpfli Verlag, Bern", - "startDate": "2015", - }, - }, - } - ] - assert data.get("provisionActivity") == [{"startDate": "2015", "type": "bf:Publication"}] - - # With sub type is not ART INBOOK - marc21xml = """ - - - Optics Express - 2020/28/6/8200-8210 - Optical Society of America - - - ART_JOURNAL - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert data.get("partOf") == [ - { - "numberingYear": "2020", - "numberingVolume": "28", - "numberingIssue": "6", - "numberingPages": "8200-8210", - "document": { - "title": "Optics Express", - "publication": {"statement": "Optical Society of America"}, - }, - } - ] - assert data.get("provisionActivity") == [{"startDate": "2020", "type": "bf:Publication"}] - - # Without $g - marc21xml = """ - - - Belser, Eva Maria - Mehr oder weniger Staat? - Stämpfli Verlag, Bern - - - ART_INBOOK - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert not data.get("partOf") - assert not data.get("provisionActivity") - - # Without empty numbering year - marc21xml = """ - - - ///- - Belser, Eva Maria - Mehr oder weniger Staat? - Stämpfli Verlag, Bern - - - ART_INBOOK - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert not data.get("partOf") - assert not data.get("provisionActivity") - - # Without numbering year - marc21xml = """ - - - Belser, Eva Maria - - Mehr oder weniger Staat? - Stämpfli Verlag, Bern - - - ART_INBOOK - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert not data.get("partOf") - assert not data.get("provisionActivity") - - # Without title - marc21xml = """ - - - Belser, Eva Maria - 2015/// - Stämpfli Verlag, Bern - - - ART_INBOOK - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert data.get("partOf") == [ - { - "numberingYear": "2015", - "document": { - "contribution": ["Belser, Eva Maria"], - "publication": { - "startDate": "2015", - "statement": "Stämpfli Verlag, Bern", - }, - }, - } - ] - assert data.get("provisionActivity") == [{"startDate": "2015", "type": "bf:Publication"}] - - # Without $c - marc21xml = """ - - - Mehr oder weniger Staat? - 2015/// - Stämpfli Verlag, Bern - - - ART_INBOOK - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert data.get("partOf") == [ - { - "numberingYear": "2015", - "document": { - "title": "Mehr oder weniger Staat?", - "publication": { - "statement": "Stämpfli Verlag, Bern", - "startDate": "2015", - }, - }, - } - ] - assert data.get("provisionActivity") == [{"startDate": "2015", "type": "bf:Publication"}] - - # Without document - marc21xml = """ - - - 2015/// - - - ART_JOURNAL - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert data.get("partOf") == [{"numberingYear": "2015"}] - assert data.get("provisionActivity") == [{"startDate": "2015", "type": "bf:Publication"}] - - -def test_start_date_priorities(app): - """Test start date priorities for provision activity.""" - # Four potential start dates. - marc21xml = """ - - - Lausanne - 1798-1799 - Bulletin officiel du Directoire, - - - 2015/// - - - 1966 - - - Thèse 1 - 2020 - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert data["provisionActivity"][0]["startDate"] == "1798" - - # Start dates from 269$c must be taken. - marc21xml = """ - - - 1966 - - - Thèse 1 - 2020 - - - 2015/// - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert data["provisionActivity"][0]["startDate"] == "1966" - - # Start dates from 773$g must be taken. - marc21xml = """ - - - Thèse 1 - 2020 - - - 2015/// - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert data["provisionActivity"][0]["startDate"] == "2015" - - # Only 502$9 - marc21xml = """ - - - Thèse 1 - 2020 - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert data["provisionActivity"][0]["startDate"] == "2020" - - -def test_marc21_to_provision_activity_field_502(app): - """Test provision activity with field 502.""" - # One field - marc21xml = """ - - - Thèse 1 - 2020 - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert data.get("provisionActivity") == [{"startDate": "2020", "type": "bf:Publication"}] - - # One field with full date - marc21xml = """ - - - Thèse 1 - 2020-09-09 - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert data.get("provisionActivity") == [{"startDate": "2020-09-09", "type": "bf:Publication"}] - - # Date does not match "YYYY" OR "YYYY-MM-DD" - marc21xml = """ - - - Thèse 1 - 2010-2020 - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert not data.get("provisionActivity") - - # Multiple fields - marc21xml = """ - - - Thèse 1 - 2010 - - - Thèse 2 - 2020 - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert data.get("provisionActivity") == [{"startDate": "2020", "type": "bf:Publication"}] - - # No field $9 - marc21xml = """ - - - Thèse 2 - - - """ - marc21json = create_record(marc21xml) - data = overdo.do(marc21json) - assert not data.get("provisionActivity") diff --git a/tests/ui/documents/dojson/rerodoc/test_rerodoc_overdo.py b/tests/ui/documents/dojson/rerodoc/test_rerodoc_overdo.py deleted file mode 100644 index 314530b45..000000000 --- a/tests/ui/documents/dojson/rerodoc/test_rerodoc_overdo.py +++ /dev/null @@ -1,114 +0,0 @@ -# Swiss Open Access Repository -# Copyright (C) 2021 RERO -# -# This program is free software: you can redistribute it and/or modify -# it under the terms of the GNU Affero General Public License as published by -# the Free Software Foundation, version 3 of the License. -# -# This program is distributed in the hope that it will be useful, -# but WITHOUT ANY WARRANTY; without even the implied warranty of -# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the -# GNU Affero General Public License for more details. -# -# You should have received a copy of the GNU Affero General Public License -# along with this program. If not, see . - -"""Test RERODOC overdo.""" - -import pytest - -from sonar.modules.documents.dojson.rerodoc.overdo import Overdo -from sonar.modules.organisations.api import OrganisationRecord - - -def test_create_organisation(app, bucket_location): - """Test create organisation.""" - Overdo.create_organisation("test") - - # Organisation creation OK - organisation = OrganisationRecord.get_record_by_pid("test") - assert organisation - assert organisation["pid"] == "test" - - # No organisation key provided - with pytest.raises(Exception) as exception: - Overdo.create_organisation(None) - assert str(exception.value) == "No key provided" - - -def test_extract_date(): - """Test date extraction.""" - # No date provided - assert Overdo.extract_date(None) == (None, None) - - # Full first date - assert Overdo.extract_date("1980-01-01") == ("1980-01-01", None) - - # Full first date, variant - assert Overdo.extract_date("01-01-1980") == ("01-01-1980", None) - - # First year only - assert Overdo.extract_date("1980") == ("1980", None) - - # First year only, variant with dash - assert Overdo.extract_date("1980-") == ("1980", None) - - # Start and end year - assert Overdo.extract_date("1980-2010") == ("1980", "2010") - - # Error on date format - with pytest.raises(Exception) as exception: - assert Overdo.extract_date("AAAA") - assert str(exception.value) == 'Date "AAAA" is not recognized' - - -def test_get_contributor_role(): - """Test contributor role mapping.""" - overdo = Overdo() - overdo.blob_record = {} - - # dgs - assert overdo.get_contributor_role("Dir.") == "dgs" - - # prt - assert overdo.get_contributor_role("Libr./Impr.") == "prt" - - # joint author - assert overdo.get_contributor_role("joint author") == "cre" - - # with role but no mapping found - assert not overdo.get_contributor_role("not-mapped") - - # no role, no doc type - assert not overdo.get_contributor_role(None) - - # no role, doc type mapped to 'cre' - overdo.blob_record = {"980__": {"a": "PREPRINT"}} - assert overdo.get_contributor_role(None) == "cre" - - # no role, doc type mapped to 'ctb' - overdo.blob_record = {"980__": {"a": "BOOK"}} - assert overdo.get_contributor_role(None) == "ctb" - - -def test_verify(app): - """Test verify result.""" - overdo = Overdo() - overdo.blob_record = {} - - # No provision activity and no type - overdo.verify({}) - assert not overdo.result_ok - - # No provision activity and type make it mandatory - overdo.verify({"documentType": "coar:c_816b"}) - assert not overdo.result_ok - - # Provision activity is present in result - overdo.blob_record = {} - overdo.verify({"provisionActivity": {}}) - assert overdo.result_ok - - # No provision activity and provision activity is optional - overdo.verify({"documentType": "coar:c_beb9"}) - assert overdo.result_ok diff --git a/tests/ui/documents/test_documents_api.py b/tests/ui/documents/test_documents_api.py index 1bb351c74..310df5d07 100644 --- a/tests/ui/documents/test_documents_api.py +++ b/tests/ui/documents/test_documents_api.py @@ -1,5 +1,5 @@ # Swiss Open Access Repository -# Copyright (C) 2021 RERO +# Copyright (C) 2021-2026 RERO # # This program is free software: you can redistribute it and/or modify # it under the terms of the GNU Affero General Public License as published by @@ -28,26 +28,12 @@ def test_get_record_by_identifier(app, db, document): """Test getting record by its identifier.""" # Record found - record = DocumentRecord.get_record_by_identifier( - [ - {"value": "111111", "type": "bf:Local", "source": "RERO DOC"}, - {"value": "R003415713", "type": "bf:Local", "source": "RERO"}, - ] - ) + record = DocumentRecord.get_record_by_identifier([{"value": "R003415713", "type": "bf:Local", "source": "RERO"}]) assert record["pid"] == document["pid"] # Not matching complete identifier record = DocumentRecord.get_record_by_identifier( - [ - {"value": "111111", "type": "bf:Local", "source": "Unmatching"}, - {"value": "R003415713", "type": "bf:Local", "source": "RERO"}, - ] - ) - assert not record - - # Mixing identifier data - record = DocumentRecord.get_record_by_identifier( - [{"value": "R003415713", "type": "bf:Local", "source": "RERO DOC"}] + [{"value": "R003415713", "type": "bf:Local", "source": "Unmatching"}] ) assert not record diff --git a/tests/ui/documents/test_documents_receivers.py b/tests/ui/documents/test_documents_receivers.py index fe0bec72b..a04b90ca2 100644 --- a/tests/ui/documents/test_documents_receivers.py +++ b/tests/ui/documents/test_documents_receivers.py @@ -1,5 +1,5 @@ # Swiss Open Access Repository -# Copyright (C) 2021 RERO +# Copyright (C) 2021-2026 RERO # # This program is free software: you can redistribute it and/or modify # it under the terms of the GNU Affero General Public License as published by @@ -29,17 +29,17 @@ def test_transform_harvested_records(app, bucket_location, capsys, harvested_record): """Test harvested record transformation.""" - transform_harvested_records(None, [harvested_record], name="rerodoc", max="1") + transform_harvested_records(None, [harvested_record], name="archive_ouverte_unige", max="1") captured = capsys.readouterr() assert captured.out.find("1 records harvested") != -1 # Max set to 0 --> import all - transform_harvested_records(None, [harvested_record], name="rerodoc", max="0") + transform_harvested_records(None, [harvested_record], name="archive_ouverte_unige", max="0") captured = capsys.readouterr() assert captured.out.find("1 records harvested") != -1 # Not an import - transform_harvested_records(None, [harvested_record], name="rerodoc", max="1", action="not-existing") + transform_harvested_records(None, [harvested_record], name="archive_ouverte_unige", max="1", action="not-existing") captured = capsys.readouterr() assert captured.out == "" @@ -61,10 +61,10 @@ def test_export_json(app, bucket_location, monkeypatch, harvested_record): data_directory = join(app.instance_path, "data") - export_json(None, [harvested_record], clean_file=False, name="rerodoc", action="not-existing") + export_json(None, [harvested_record], clean_file=False, name="archive_ouverte_unige", action="not-existing") assert not exists(data_directory) - export_json(None, [harvested_record], clean_file=False, name="rerodoc", action="export") + export_json(None, [harvested_record], clean_file=False, name="archive_ouverte_unige", action="export") assert len(listdir(data_directory)) == 1 shutil.rmtree(data_directory) diff --git a/tests/ui/test_views.py b/tests/ui/test_views.py index d4187aad0..c3c4f0b21 100644 --- a/tests/ui/test_views.py +++ b/tests/ui/test_views.py @@ -1,5 +1,5 @@ # Swiss Open Access Repository -# Copyright (C) 2021 RERO +# Copyright (C) 2021-2026 RERO # # This program is free software: you can redistribute it and/or modify # it under the terms of the GNU Affero General Public License as published by @@ -318,45 +318,6 @@ def test_record_image_url(client): assert record_image_url(record, "org", "test2.jpg") == "/organisations/1/files/test2.jpg" -def test_rerodoc_redirection(client, app, document, organisation): - """Test redirection with RERODOC identifier.""" - global_view = app.config.get("SONAR_APP_DEFAULT_ORGANISATION") - # does not exist - res = client.get(url_for("sonar.rerodoc_redirection", pid="NOT-EXISTING")) - assert res.status_code == 404 - - # Files - res = client.get(url_for("sonar.rerodoc_redirection", pid="111111", filename="test.pdf")) - assert res.status_code == 302 - assert res.location.find(f"/documents/{document['pid']}/files/test.pdf") != -1 - - def changeorg(key, value): - organisation[key] = value - organisation.commit() - organisation.dbcommit() - # Note: this is not needed as all is done from the db - # organisation.reindex() - - # No dedicated - changeorg("isShared", False) - res = client.get(url_for("sonar.rerodoc_redirection", pid="111111")) - assert res.status_code == 302 - assert res.location.find(f"/{global_view}/documents/{document['pid']}") != -1 - - # Dedicated - changeorg("isDedicated", True) - res = client.get(url_for("sonar.rerodoc_redirection", pid="111111")) - assert res.status_code == 302 - assert res.location.find(f"/{organisation['code']}/documents/{document['pid']}") != -1 - - # Shared - changeorg("isDedicated", False) - changeorg("isShared", True) - res = client.get(url_for("sonar.rerodoc_redirection", pid="111111")) - assert res.status_code == 302 - assert res.location.find(f"/{organisation['code']}/documents/{document['pid']}") != -1 - - def test_format_date(app): """Test date formatting.""" assert format_date("1984-05-01 14:30:00", "%d/%m/%Y %H:%M") == "01/05/1984 16:30" diff --git a/tests/unit/documents/loaders/test_loader_schema_factory.py b/tests/unit/documents/loaders/test_loader_schema_factory.py index c13d80dce..45aef6d4e 100644 --- a/tests/unit/documents/loaders/test_loader_schema_factory.py +++ b/tests/unit/documents/loaders/test_loader_schema_factory.py @@ -1,5 +1,5 @@ # Swiss Open Access Repository -# Copyright (C) 2021 RERO +# Copyright (C) 2021-2026 RERO # # This program is free software: you can redistribute it and/or modify # it under the terms of the GNU Affero General Public License as published by @@ -13,19 +13,19 @@ # You should have received a copy of the GNU Affero General Public License # along with this program. If not, see . -"""Test BORIS record loader.""" +"""Test loader schema factory.""" import pytest +from sonar.modules.documents.loaders.schemas.archive_ouverte_unige import ArchiveOuverteUnigeSchema from sonar.modules.documents.loaders.schemas.factory import LoaderSchemaFactory -from sonar.modules.documents.loaders.schemas.rerodoc import RerodocSchema def test_loader_schema_factory(): """Test loader schema factory.""" - schema = LoaderSchemaFactory.create("rerodoc") - assert isinstance(schema, RerodocSchema) + schema = LoaderSchemaFactory.create("archive_ouverte_unige") + assert isinstance(schema, ArchiveOuverteUnigeSchema) with pytest.raises(Exception) as exception: - schema = LoaderSchemaFactory.create("not-existing") - assert str(exception) == 'No schema defined for key "not-existing"' + LoaderSchemaFactory.create("not-existing") + assert str(exception.value) == 'No schema defined for key "not-existing"' diff --git a/tests/unit/documents/loaders/test_rerodoc_loader.py b/tests/unit/documents/loaders/test_rerodoc_loader.py deleted file mode 100644 index 66aacb60e..000000000 --- a/tests/unit/documents/loaders/test_rerodoc_loader.py +++ /dev/null @@ -1,220 +0,0 @@ -# Swiss Open Access Repository -# Copyright (C) 2021 RERO -# -# This program is free software: you can redistribute it and/or modify -# it under the terms of the GNU Affero General Public License as published by -# the Free Software Foundation, version 3 of the License. -# -# This program is distributed in the hope that it will be useful, -# but WITHOUT ANY WARRANTY; without even the implied warranty of -# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the -# GNU Affero General Public License for more details. -# -# You should have received a copy of the GNU Affero General Public License -# along with this program. If not, see . - -"""Test BORIS record loader.""" - -from sonar.modules.documents.loaders.schemas.rerodoc import RerodocSchema - - -def test_rerodoc_loader(app, organisation): - """Test RERODOC record loader.""" - xml = """ - -
- oai:doc.rero.ch:289209 - 2017-08-02T19:31:33Z - nl-uzh - article - rero_explore - postprint -
- - - 00000coc 2200000uu 4500 - 289209 - 20170803135013.0 - - 10.1093/mnras/stu2500 - doi - - - oai:doc.rero.ch:289209 - nl-uzh - article - rero_explore - postprint - - - swissbib.ch:(NATIONALLICENCE)oxford-10.1093/mnras/stu2500 - - - eng - - - 52 - - - Capelo, Pedro R. - Department of Astronomy, University of Michigan, Ann Arbor, MI 48109, USA - - - Growth and activity of black holes in galaxy mergers with varying mass ratios - - - We study supermassive black holes (BHs) in merging galaxies - - - © 2015 The Authors Published by Oxford University Press on behalf of the Royal Astronomical Society - - - galaxies: active ; galaxies: interactions ; galaxies: nuclei - - - Volonteri, Marta - Department of Astronomy, University of Michigan, Ann Arbor, MI 48109, USA - - - Dotti, Massimo - Dipartimento di Fisica G. Occhialini, Università degli Studi di Milano Bicocca, Piazza della Scienza 3, I-20126 Milano, Italy - - - Bellovary, Jillian M. - Department of Physics and Astronomy, Vanderbilt University, Nashville, TN 37235, USA - - - Mayer, Lucio - Institute for Computational Science, University of Zürich, Winterthurerstrasse 190, CH-8057 Zürich, Switzerland - - - Governato, Fabio - Department of Astronomy, University of Washington, Box 351580, Seattle, WA 98195, USA - - - 0035-8711 - Monthly Notices of the Royal Astronomical Society - 2015/447/3/2123-2143 - Oxford University Press - - - Publisher's version - https://doi.org/10.1093/mnras/stu2500 - - - Alternative version - http://www-geol.unine.ch/GEOMAGNETISME/tract.html - - - Consortium of Swiss Academic Libraries - Zurich - doc.support@rero.ch - - - POSTPRINT - org - ART_JOURNAL - - - National Licences: uzh - - - - - """ # nopep8 - assert RerodocSchema().dump(xml) == { - "identifiedBy": [ - {"type": "bf:Local", "source": "RERO DOC", "value": "289209"}, - { - "type": "bf:Local", - "source": "Swissbib", - "value": "(NATIONALLICENCE)oxford-10.1093/mnras/stu2500", - }, - {"type": "bf:Doi", "value": "10.1093/mnras/stu2500"}, - ], - "collections": [{"$ref": "https://sonar.ch/api/collections/1"}], - "usageAndAccessPolicy": { - "label": "© 2015 The Authors Published by Oxford University Press on " - "behalf of the Royal Astronomical Society", - "license": "License undefined", - }, - "abstracts": [ - { - "value": "We study supermassive black holes (BHs) in merging galaxies", - "language": "eng", - } - ], - "partOf": [ - { - "numberingYear": "2015", - "numberingVolume": "447", - "numberingIssue": "3", - "numberingPages": "2123-2143", - "document": { - "title": "Monthly Notices of the Royal Astronomical Society", - "publication": {"statement": "Oxford University Press"}, - }, - } - ], - "provisionActivity": [{"type": "bf:Publication", "startDate": "2015"}], - "otherEdition": [ - { - "document": {"electronicLocator": "http://www-geol.unine.ch/GEOMAGNETISME/tract.html"}, - "publicNote": "Alternative version", - } - ], - "language": [{"type": "bf:Language", "value": "eng"}], - "documentType": "coar:c_6501", - "organisation": [{"$ref": "https://sonar.ch/api/organisations/org"}], - "classification": [{"type": "bf:ClassificationUdc", "classificationPortion": "52"}], - "contribution": [ - { - "agent": {"type": "bf:Person", "preferred_name": "Capelo, Pedro R."}, - "role": ["cre"], - "affiliation": "Department of Astronomy, University of Michigan, Ann Arbor, MI 48109, USA", - }, - { - "agent": {"type": "bf:Person", "preferred_name": "Volonteri, Marta"}, - "role": ["cre"], - "affiliation": "Department of Astronomy, University of Michigan, Ann Arbor, MI 48109, USA", - }, - { - "agent": {"type": "bf:Person", "preferred_name": "Dotti, Massimo"}, - "role": ["cre"], - "affiliation": "Dipartimento di Fisica G. Occhialini, Università degli Studi di " - "Milano Bicocca, Piazza della Scienza 3, I-20126 Milano, Italy", - }, - { - "agent": { - "type": "bf:Person", - "preferred_name": "Bellovary, Jillian M.", - }, - "role": ["cre"], - "affiliation": "Department of Physics and Astronomy, Vanderbilt University, Nashville, TN 37235, USA", - }, - { - "agent": {"type": "bf:Person", "preferred_name": "Mayer, Lucio"}, - "role": ["cre"], - "affiliation": "Institute for Computational Science, University of Zürich, " - "Winterthurerstrasse 190, CH-8057 Zürich, Switzerland", - }, - { - "agent": {"type": "bf:Person", "preferred_name": "Governato, Fabio"}, - "role": ["cre"], - "affiliation": "Department of Astronomy, University of Washington, Box 351580, Seattle, WA 98195, USA", - }, - ], - "title": [ - { - "type": "bf:Title", - "mainTitle": [ - { - "value": "Growth and activity of black holes in galaxy mergers with varying mass ratios", - "language": "eng", - } - ], - } - ], - } diff --git a/uv.lock b/uv.lock 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