Can you tell me how to do the following?
Given a range within a multiple sequence alignment (MSA), I would like to
extract the indexes of the sequences within that range.
For example: let's say I have an MSA of length 100 bp containing 3 sequences.
For range 30-50 in the MSA I want to extract the indexes of the 3 sequences
within that 30-50 range in the MSA. Due to insertions or deletions for example,
sequence 1 may be 30-50, sequence 2 may be 25-46, and sequence 3 may be 35-55.
Original issue reported on code.google.com by
davero...@gmail.comon 20 Dec 2014 at 6:17