Sorting quality metrics calculations

[zjm199502]

Hi peter,

I got a problem on cell-metrics.

isolationDistance and lRatio seems didn't calculated automatically (with no mannual modification on the default cell_metrics settings). Do I need perfom the calculations individually?

Thank you very much in advance.

Jinming

[petersenpeter]

Hi Jingming

The sorting quality metrics are not included in the standard metrics, because I have not had time to code a solution that works across different probe layouts and sorting algorithms. If you do end up coding it, feel free to push your code to the repo.

Best
Peter

[zjm199502]

OK, although it's difficulty for me, I'll try to do it later.

[petersenpeter]

Which spike sorting software are you using?

[zjm199502]

Now I'm using Spyking Circus.

[zjm199502]

Now I'm using Spyking Circus发自我的 iPhone在 2022年11月30日，16:31，Peter C. Petersen ***@***.***> 写道： Which spike sorting software are you using? —Reply to this email directly, view it on GitHub, or unsubscribe.You are receiving this because you authored the thread.Message ID: ***@***.***>

[petersenpeter]

I have scripts for calculating the metrics for Neurosuite and for Kilosort, but I don't believe I have them for Spyking Circus, unfortunately.

[zjm199502]

Could you share the scripts for Neuosuite and Kilosort? I think it will provides some references

[petersenpeter]

Hi
You can find the quality metrics for Kilosort here by Nick Steinmetz: https://github.com/cortex-lab/sortingQuality
For Neurosuite, the code is actually already part of CellExplorer: https://github.com/petersenpeter/CellExplorer/blob/master/ProcessCellMetrics.m#L662

[zjm199502]

Thank you for sharing!

…

2022年12月21日 05:51，Peter C. Petersen ***@***.***> 写道： Hi You can find the quality metrics for Kilosort here by Nick Steinmetz: https://github.com/cortex-lab/sortingQuality For Neurosuite, the code is actually already part of CellExplorer: https://github.com/petersenpeter/CellExplorer/blob/master/ProcessCellMetrics.m#L662 — Reply to this email directly, view it on GitHub <#86 (reply in thread)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AOMMT6OXFPBZ75H245ZBOEDWOIS4ZANCNFSM6AAAAAASOTXS3A>. You are receiving this because you authored the thread.