Sir, please try for the locally build ocimumSpecies.xml dictionary to get ocimum species informations.
I tried for the following command.
ambarish123@ubuntu:~$ ami-search-new -p osanctumnew/ --dictionary country /home/ambarish123/ocimumSpecies.xml
Run time log.
Generic values (AMISearchTool)
================================
basename null
cproject /home/ambarish123/osanctumnew
ctree
cTreeList 20 trees [osanctumnew/PMC4238170, osanctumnew/PMC4286833, o
dryrun false
excludeBase null
excludeTrees null
file types []
forceMake false
includeBase null
includeTrees null
log4j
logfile null
verbose 0
Specific values (AMISearchTool)
================================
dictionaryList [country, /home/ambarish123/ocimumSpecies.xml]
dictionaryTop null
dictionarySuffix [xml]
ignorePlugins []
cProject: osanctumnew
0 [main] DEBUG org.contentmine.ami.plugins.CommandProcessor - running NORMA -i fulltext.xml -o scholarly.html --transform nlm2html --project osanctumnew
PMC4238170 .PMC4286833 PMC4296439 PMC4558530 PMC4562040 PMC4631451 PMC4774317 PMC4847459 PMC4945999 UNKNOWN nlm tag: issn-l
PMC4971952 PMC5061480 .PMC5234046 PMC5289091 PMC5301171 PMC5860693 PMC5891864 PMC5987647 PMC6023537 PMC6200556 PMC6239295
running: word; word([frequencies])[{xpath:@count>20}, {w.stopwords:pmcstop.txt stopwords.txt}]......
running: search; search([country])[]......
running: search; search([/home/ambarish123/ocimumSpecies.xml])[]134330 [main] DEBUG org.contentmine.cproject.files.ResourceLocation - FILE /home/ambarish123/ocimumSpecies.xml
......
create data tables
140368 [main] WARN org.contentmine.ami.plugins.ResultsAnalysisImpl - Null pluginOption
rrrrrrrr
issue:
Output file for the ocimumSpecies are empty and there is no cooccurrence between the search term. As per the used command, there would have been column for each search term
i.e country and ocimumSpecies but into the commonest.DataTables.html contains only column for country.
Sir, please try for the locally build ocimumSpecies.xml dictionary to get ocimum species informations.
I tried for the following command.
Run time log.
issue:
Output file for the ocimumSpecies are empty and there is no cooccurrence between the search term. As per the used command, there would have been column for each search term
i.e country and ocimumSpecies but into the commonest.DataTables.html contains only column for country.
ocimumSpecies dictionary