Problem
FIND_CLIQUES process uses module load R/4.4.2 inside the container:
set -e
# Load R
module load R/4.4.2
Why this is bad:
- Completely defeats the purpose of containers
- Creates host dependency (environment modules must exist)
- Will fail on systems without Lmod/environment modules
- R should already be in the container PATH
Solution
Remove module load R/4.4.2 line. The container's R (version 4.4.2) should be used automatically.
If specific R version is needed, ensure it's built into the container definition (RComPlEx.def).
Affected process:
Priority: High
Effort: Low (single line deletion)
Note: This will invalidate cache for FIND_CLIQUES tasks only
Problem
FIND_CLIQUES process uses
module load R/4.4.2inside the container:Why this is bad:
Solution
Remove
module load R/4.4.2line. The container's R (version 4.4.2) should be used automatically.If specific R version is needed, ensure it's built into the container definition (RComPlEx.def).
Affected process:
Priority: High
Effort: Low (single line deletion)
Note: This will invalidate cache for FIND_CLIQUES tasks only