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Remove 'module load R' from FIND_CLIQUES process #2

@paliocha

Description

@paliocha

Problem

FIND_CLIQUES process uses module load R/4.4.2 inside the container:

set -e

# Load R
module load R/4.4.2

Why this is bad:

  • Completely defeats the purpose of containers
  • Creates host dependency (environment modules must exist)
  • Will fail on systems without Lmod/environment modules
  • R should already be in the container PATH

Solution

Remove module load R/4.4.2 line. The container's R (version 4.4.2) should be used automatically.

If specific R version is needed, ensure it's built into the container definition (RComPlEx.def).

Affected process:

  • FIND_CLIQUES (line ~223)

Priority: High
Effort: Low (single line deletion)
Note: This will invalidate cache for FIND_CLIQUES tasks only

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