Adding Multiple Genomes to an Existing Cactus Alignment in a Single Step #1865
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Osteomeles
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I am using the following command to add a new genome to an existing Cactus alignment:
singularity exec -B /path/ cactus_v2.8.2.sif cactus-update-prepare add branch
--childGenome So
--parentGenome Anc00
--cactus-prepare-options '--alignCores 30'
--outDir ./steps2
--jobStore ./jobstore2
--ancestorName Ancnew1
--topBranchLength 0.001
Tal.hal ./input.txt
I understand that this approach allows a new genome to be added to an existing Cactus alignment, but it seems that only one genome can be added at a time. Is there a way to add multiple new genomes to the alignment in a single step?
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