diff --git a/.github/workflows/tests.yml b/.github/workflows/tests.yml index ec6d3c6..f9d497b 100644 --- a/.github/workflows/tests.yml +++ b/.github/workflows/tests.yml @@ -6,7 +6,10 @@ # - get a badge for tests passing # - download binary dependencies from conda name: Tests -on: [push, pull_request] +on: + push: + branches: [main] + pull_request: jobs: build: diff --git a/requirements.txt b/requirements.txt index c0eef08..09ec848 100644 --- a/requirements.txt +++ b/requirements.txt @@ -1,6 +1,6 @@ numpy>=2.0.0,<3.0.0 -pandas>=2.0.0,<3.0.0 +pandas>=2.0.0,<4.0.0 pyensembl>=2.6.4 memoized_property>=1.0.2 serializable>=1.1.0 -sercol>=0.1.4 +sercol>=1.0.3 diff --git a/tests/test_mouse.py b/tests/test_mouse.py index 319e916..97e585a 100644 --- a/tests/test_mouse.py +++ b/tests/test_mouse.py @@ -18,12 +18,12 @@ from .data import data_path MOUSE_ENSEMBL_RELEASE = 95 -SERVER = "ftp://ftp.ensembl.org" +SERVER = "https://ftp.ensembl.org" MOUSE_GTF_PATH = \ - SERVER + "/pub/release-%d/gtf/mus_musculus/Mus_musculus.GRCm38.%d.gtf.gz" % ( + SERVER + "/pub/release-%d/gtf/mus_musculus/Mus_musculus.GRCm38.%d.chr_patch_hapl_scaff.gtf.gz" % ( MOUSE_ENSEMBL_RELEASE, MOUSE_ENSEMBL_RELEASE) MOUSE_TRANSCRIPT_FASTA_PATH = \ - SERVER + "/pub/release-%d/fasta/mus_musculus/cdna/Mus_musculus.GRCm38.cdna.all.fa.gz" + SERVER + "/pub/release-%d/fasta/mus_musculus/cdna/Mus_musculus.GRCm38.cdna.all.fa.gz" % MOUSE_ENSEMBL_RELEASE MOUSE_PROTEIN_FASTA_PATH = \ SERVER + "/pub/release-%d/fasta/mus_musculus/pep/Mus_musculus.GRCm38.pep.all.fa.gz" % ( MOUSE_ENSEMBL_RELEASE) diff --git a/varcode/version.py b/varcode/version.py index e6f9023..71004d1 100644 --- a/varcode/version.py +++ b/varcode/version.py @@ -1 +1 @@ -__version__ = "10.10.0" +__version__ = "10.10.1"