Issues

• Support contextual exact-peptide cache queries in the occurrence API

  openvax/topiary#468 · Filter by author iskandr opened on Oct 5, 2026

• Adopt the mhctools documentation style

  openvax/topiary#452 · Filter by author iskandr opened on Oct 2, 2026

• DSL display loses transform parentheses and arithmetic grouping

  openvax/topiary#448 · Filter by author iskandr opened on Oct 1, 2026

• Preflight Git push access before publishing a release to PyPI

  openvax/topiary#434 · Filter by author iskandr opened on Sep 29, 2026

• Support --protein-change together with genomic variant inputs in one run

  openvax/topiary#421 · Filter by author iskandr opened on Sep 28, 2026

• Binding-aware cross-reactivity axes are no longer tracked by any open issue

  openvax/topiary#412 · Filter by author iskandr opened on Sep 27, 2026
  1

• Decide whether indel and frameshift wt_peptide gets a remapped comparator

  openvax/topiary#411 · Filter by author iskandr opened on Sep 27, 2026

• Use the shared OpenVax Sid union panel (iskandr/osteosarc#56) for Sid fixtures and the audit

  openvax/topiary#403 · Filter by author iskandr opened on Sep 26, 2026
  1

• Support sparse historical table predictions with unknown model versions as a prediction source

  openvax/topiary#368 · Filter by author iskandr opened on Sep 21, 2026

• Resolve exact alleles for ten incomplete osteosarc catalog entries

  openvax/topiary#347 · Filter by author iskandr opened on Sep 18, 2026
  4

• Trace missing RNA annotations in the archived osteosarc pVACseq VCF input

  openvax/topiary#339 · Filter by author iskandr opened on Sep 17, 2026
  1

• Add a successful NetMHCcons cache fixture and file-to-CLI regression

  openvax/topiary#333 · Filter by author iskandr opened on Sep 16, 2026

• A flank/genotype-mismatched protein-scan occurrence never tries the fallback predictor, even when it supports protein scanning

  openvax/topiary#307 · Filter by author iskandr opened on Sep 14, 2026

• Expose extracellular cleavage and peptide half-life evidence without conflating stability endpoints

  openvax/topiary#288 · Filter by author iskandr opened on Sep 9, 2026
  4

• Carry a self-presentation evidence tier on nearest-self, without owning the data

  openvax/topiary#224 · Filter by author iskandr opened on Aug 31, 2026
  1

• Ship a curated non-CTA reference proteome artifact for nearest-self

  openvax/topiary#124 · Filter by author iskandr opened on Apr 14, 2026
  13