diff --git a/CHANGELOG.md b/CHANGELOG.md
index 6fa9a87..938358c 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -4,6 +4,7 @@
 
 - Fixed revalidation prompts to compact historical and feature metadata and hard-cap metadata lists even when configured file limits are high, preventing provider input overflows, thanks @pai-scaffolde.
 - Added an opt-in Claude host auth context that preserves the default-deny environment, uses Claude Code safe mode, validates auth through doctor, and reports redacted OAuth failure signals, thanks @grantjayy.
+- Fixed agent-mode mapping to respect the `--since` and `--include-dirty` diff filters, ensuring unchanged features are preserved and not remapped by the provider.
 
 ## 0.7.0 - 2026-06-15
 
diff --git a/src/agent-mapper.ts b/src/agent-mapper.ts
index c8d2fcf..260d1ca 100644
--- a/src/agent-mapper.ts
+++ b/src/agent-mapper.ts
@@ -35,6 +35,7 @@ type AgentMapOptions = {
   provider: Provider | null;
   providerOptions: ProviderOptions;
   inventory?: PathFilters;
+  changedFiles?: ReadonlySet<string>;
   onProgress?: (event: string, fields: Record<string, string | number | boolean>) => void;
 };
 
@@ -156,6 +157,7 @@ export async function mapWithSource(
     options.providerOptions,
     inventory,
     options.inventory,
+    options.changedFiles,
   );
   options.onProgress?.("agent-done", {
     features: agent.features.length,
@@ -208,6 +210,7 @@ async function agentMap(
   providerOptions: ProviderOptions,
   inventory: RepoInventory,
   filters: PathFilters | undefined,
+  changedFiles: ReadonlySet<string> | undefined,
 ): Promise<MapResult> {
   const prompt = buildAgentMapPrompt(project, {
     manifests: inventory.manifests,
@@ -224,9 +227,10 @@ async function agentMap(
   const mappedSeeds = dedupeFeatureSeeds(
     seeds.filter((seed): seed is FeatureSeed => seed !== null),
   );
-  return filters === undefined
-    ? mapFeatureSeeds(root, project, existing, mappedSeeds)
-    : mapFeatureSeeds(root, project, existing, mappedSeeds, { filters });
+  return mapFeatureSeeds(root, project, existing, mappedSeeds, {
+    ...(filters !== undefined ? { filters } : {}),
+    ...(changedFiles !== undefined ? { changedFiles } : {}),
+  });
 }
 
 async function toSeed(
diff --git a/src/app.ts b/src/app.ts
index 474f9a6..de6bd25 100644
--- a/src/app.ts
+++ b/src/app.ts
@@ -1,13 +1,14 @@
 import { appendFile } from "node:fs/promises";
 import { loadConfig, parseReasoningEffort, resolveStateDir } from "./config.js";
 import { applyProviderFlags, providerOptions, stringFlag } from "./command-support.js";
+import { changedFiles } from "./command-selection.js";
 import { loadProjectState, type AppContext } from "./app-context.js";
 import { detectProject } from "./detect.js";
 import { ClawpatchError } from "./errors.js";
 import { nowIso, writeJson } from "./fs.js";
 import { discoverGit } from "./git.js";
 import { mapWithSource } from "./agent-mapper.js";
-import { mapFeatures } from "./mapper.js";
+import { featureTouchesChangedFiles, mapFeatures } from "./mapper.js";
 import { emitProgress } from "./progress.js";
 import { providerByName } from "./provider.js";
 import {
@@ -79,13 +80,17 @@ export async function mapCommand(
   const provider = source === "heuristic" ? null : providerByName(config.provider.name);
   const existing = await readFeatures(loaded.paths);
   const filters = { include: config.include, exclude: config.exclude };
+  const incremental = hasIncrementalFlags(flags);
+  const diffFiles = incremental ? await changedFiles(loaded.root, flags) : undefined;
   emitProgress(context, "map", "start", {
     source,
     existing: existing.length,
     dryRun: flags["dryRun"] === true,
+    ...(diffFiles !== undefined ? { incremental: true, changedFiles: diffFiles.size } : {}),
   });
   const heuristic = await mapFeatures(loaded.root, loaded.project, existing, {
     filters,
+    ...(diffFiles !== undefined ? { changedFiles: diffFiles } : {}),
     onProgress: (event) => {
       emitProgress(context, "map", event.event, {
         mapper: event.mapper,
@@ -107,6 +112,7 @@ export async function mapCommand(
     provider,
     providerOptions: providerOptions(config),
     inventory: filters,
+    ...(diffFiles !== undefined ? { changedFiles: diffFiles } : {}),
     onProgress: (event, fields) => {
       emitProgress(context, "map", event, fields);
     },
@@ -127,6 +133,7 @@ export async function mapCommand(
       source: result.decision.source,
       usedAgent: result.decision.usedAgent,
       reason: result.decision.reason,
+      ...(diffFiles !== undefined ? { incremental: true, changedFiles: diffFiles.size } : {}),
     };
   }
   emitProgress(context, "map", "write-start", {
@@ -137,6 +144,9 @@ export async function mapCommand(
   }
   for (const feature of existing) {
     if (!activeFeatureIds.has(feature.featureId)) {
+      if (diffFiles !== undefined && !featureTouchesChangedFiles(feature, diffFiles)) {
+        continue;
+      }
       await writeFeature(loaded.paths, {
         ...feature,
         status: "skipped",
@@ -158,6 +168,7 @@ export async function mapCommand(
     source: result.decision.source,
     usedAgent: result.decision.usedAgent,
     reason: result.decision.reason,
+    ...(diffFiles !== undefined ? { incremental: true, changedFiles: diffFiles.size } : {}),
     next: "clawpatch review --limit 3",
   };
 }
@@ -394,6 +405,10 @@ function parseMapSource(flags: Record<string, string | boolean>): "heuristic" |
   );
 }
 
+function hasIncrementalFlags(flags: Record<string, string | boolean>): boolean {
+  return stringFlag(flags, "since") !== undefined || flags["includeDirty"] === true;
+}
+
 // eslint-disable-next-line no-underscore-dangle
 export const __testing = {
   ...reviewTesting,
diff --git a/src/cli.ts b/src/cli.ts
index 0310bec..68e6972 100644
--- a/src/cli.ts
+++ b/src/cli.ts
@@ -131,7 +131,16 @@ type CommandSpec = {
 const commandSpecs = {
   init: { flags: ["force"], usage: ["clawpatch init [flags]"], run: initCommand },
   map: {
-    flags: ["dryRun", "source", "provider", "model", "reasoningEffort", "skipGitRepoCheck"],
+    flags: [
+      "dryRun",
+      "source",
+      "provider",
+      "model",
+      "reasoningEffort",
+      "skipGitRepoCheck",
+      "since",
+      "includeDirty",
+    ],
     usage: ["clawpatch map [flags]"],
     run: mapCommand,
   },
diff --git a/src/mapper.ts b/src/mapper.ts
index 0e1e946..bee9555 100644
--- a/src/mapper.ts
+++ b/src/mapper.ts
@@ -45,6 +45,7 @@ export type MapProgressEvent = {
 export type MapOptions = {
   onProgress?: (event: MapProgressEvent) => void;
   filters?: PathFilters;
+  changedFiles?: ReadonlySet<string>;
 };
 
 const featureMappers: FeatureMapper[] = [
@@ -95,6 +96,12 @@ export async function mapFeatureSeeds(
     if (seed === null) {
       continue;
     }
+    if (
+      options.changedFiles !== undefined &&
+      !seedTouchesChangedFiles(seed, options.changedFiles)
+    ) {
+      continue;
+    }
     const identity = featureIdentity(seed, existingById);
     const featureId = identity.featureId;
     const previous = existingById.get(featureId);
@@ -314,3 +321,34 @@ function statusForChangedFeature(status: FeatureRecord["status"]): FeatureRecord
   }
   return status;
 }
+
+function seedTouchesChangedFiles(seed: FeatureSeed, changedFiles: ReadonlySet<string>): boolean {
+  if (changedFiles.has(seed.entryPath)) {
+    return true;
+  }
+  if (seed.ownedFiles !== undefined) {
+    for (const file of seed.ownedFiles) {
+      if (changedFiles.has(file.path)) {
+        return true;
+      }
+    }
+  }
+  return false;
+}
+
+export function featureTouchesChangedFiles(
+  feature: FeatureRecord,
+  changedFiles: ReadonlySet<string>,
+): boolean {
+  for (const entrypoint of feature.entrypoints) {
+    if (changedFiles.has(entrypoint.path)) {
+      return true;
+    }
+  }
+  for (const file of feature.ownedFiles) {
+    if (changedFiles.has(file.path)) {
+      return true;
+    }
+  }
+  return false;
+}
diff --git a/src/workflow.test.ts b/src/workflow.test.ts
index 65144c4..eef5394 100644
--- a/src/workflow.test.ts
+++ b/src/workflow.test.ts
@@ -1833,6 +1833,40 @@ describe("workflow", () => {
     expect(agentFeature?.tests).toEqual([{ path: "agent/worker.test.custom", command: null }]);
   });
 
+  it("applies --since changed files filter to agent-mapped features", async () => {
+    const root = await sinceFixture("clawpatch-agent-map-since-");
+    await writeFixture(root, "agent/worker.custom", "worker source\n");
+    await writeFixture(root, "agent/scheduler.custom", "scheduler source\n");
+    await runCommand("git add agent/worker.custom agent/scheduler.custom", root);
+    await runCommand("git commit -m 'initial custom files'", root);
+
+    const context = await makeContext(testOptions(root));
+    await initCommand(context, {});
+    await mapCommand(context, { source: "agent", provider: "mock" });
+
+    await writeFixture(root, "agent/worker.custom", "changed worker source\n");
+    await runCommand("git add agent/worker.custom", root);
+    await runCommand("git commit -m 'update worker'", root);
+
+    const mapped = (await mapCommand(context, {
+      source: "agent",
+      provider: "mock",
+      since: "HEAD~1",
+    })) as any;
+
+    expect(mapped.incremental).toBe(true);
+    expect(mapped.changedFiles).toBe(1);
+
+    const updatedFeatures = await readFeatures(statePaths(join(root, ".clawpatch")));
+    const updatedScheduler = updatedFeatures.find((f) =>
+      f.ownedFiles.some((file) => file.path === "agent/scheduler.custom"),
+    );
+
+    // The scheduler feature should be completely untouched (same updatedAt timestamp and NOT skipped)
+    expect(updatedScheduler).toBeDefined();
+    expect(updatedScheduler?.status).not.toBe("skipped");
+  });
+
   it("builds agent mapper inventory from git-visible files and config filters", async () => {
     const root = await fixtureRoot("clawpatch-agent-map-git-inventory-");
     await writeFixture(