From baad08a2d57b3b97e993fdabfe816670f20a8a79 Mon Sep 17 00:00:00 2001 From: BenjaminWehnert1008 Date: Tue, 23 Jun 2026 12:19:41 +0200 Subject: [PATCH] fix release linting --- modules/local/fitness/run_mutscan/environment.yml | 4 ++-- nextflow.config | 2 +- 2 files changed, 3 insertions(+), 3 deletions(-) diff --git a/modules/local/fitness/run_mutscan/environment.yml b/modules/local/fitness/run_mutscan/environment.yml index 9765c04..aeaf45d 100644 --- a/modules/local/fitness/run_mutscan/environment.yml +++ b/modules/local/fitness/run_mutscan/environment.yml @@ -2,6 +2,6 @@ channels: - conda-forge - bioconda dependencies: - - bioconda::bioconductor-biostrings=2.74.0 + - bioconda::bioconductor-biostrings=2.78.0 - bioconda::bioconductor-mutscan=1.0.0 - - conda-forge::r-base=4.4.1 + - conda-forge::r-base=4.5.3 diff --git a/nextflow.config b/nextflow.config index f8086e2..64944d7 100644 --- a/nextflow.config +++ b/nextflow.config @@ -189,7 +189,7 @@ includeConfig params.custom_config_base && (!System.getenv('NXF_OFFLINE') || !pa // Load nf-core/deepmutscan custom profiles from different institutions. -// includeConfig params.custom_config_base && (!System.getenv('NXF_OFFLINE') || !params.custom_config_base.startsWith('http')) ? "${params.custom_config_base}/pipeline/deepmutscan.config" : "/dev/null" +includeConfig params.custom_config_base && (!System.getenv('NXF_OFFLINE') || !params.custom_config_base.startsWith('http')) ? "${params.custom_config_base}/pipeline/deepmutscan.config" : "/dev/null" // Set default registry for Apptainer, Docker, Podman, Charliecloud and Singularity independent of -profile // Will not be used unless Apptainer / Docker / Podman / Charliecloud / Singularity are enabled