diff --git a/README.md b/README.md
index 540394c..af198cc 100644
--- a/README.md
+++ b/README.md
@@ -4,7 +4,7 @@
 
 [![Open in GitHub Codespaces](https://img.shields.io/badge/Open_In_GitHub_Codespaces-black?labelColor=grey&logo=github)](https://github.com/codespaces/new/nf-core/bacmodel)
 [![GitHub Actions CI Status](https://github.com/nf-core/bacmodel/actions/workflows/nf-test.yml/badge.svg)](https://github.com/nf-core/bacmodel/actions/workflows/nf-test.yml)
-[![GitHub Actions Linting Status](https://github.com/nf-core/bacmodel/actions/workflows/linting.yml/badge.svg)](https://github.com/nf-core/bacmodel/actions/workflows/linting.yml)[![AWS CI](https://img.shields.io/badge/CI%20tests-full%20size-FF9900?labelColor=000000&logo=Amazon%20AWS)](https://nf-co.re/bacmodel/results)[![Cite with Zenodo](http://img.shields.io/badge/DOI-10.5281/zenodo.XXXXXXX-1073c8?labelColor=000000)](https://doi.org/10.5281/zenodo.XXXXXXX)
+[![GitHub Actions Linting Status](https://github.com/nf-core/bacmodel/actions/workflows/linting.yml/badge.svg)](https://github.com/nf-core/bacmodel/actions/workflows/linting.yml)[![AWS CI](https://img.shields.io/badge/CI%20tests-full%20size-FF9900?labelColor=000000&logo=Amazon%20AWS)](https://nf-co.re/bacmodel/results)[![Cite with Zenodo](http://img.shields.io/badge/DOI-10.5281/zenodo.23808234-1073c8?labelColor=000000)](https://doi.org/10.5281/zenodo.23808234)
 [![nf-test](https://img.shields.io/badge/unit_tests-nf--test-337ab7.svg)](https://www.nf-test.com)
 
 [![Nextflow](https://img.shields.io/badge/version-%E2%89%A525.10.4-green?style=flat&logo=nextflow&logoColor=white&color=%230DC09D&link=https%3A%2F%2Fnextflow.io)](https://www.nextflow.io/)
@@ -105,8 +105,7 @@ For further information or help, don't hesitate to get in touch on the [Slack `#
 
 ## Citations
 
-<!-- TODO nf-core: Add citation for pipeline after first release. Uncomment lines below and update Zenodo doi and badge at the top of this file. -->
-<!-- If you use nf-core/bacmodel for your analysis, please cite it using the following doi: [10.5281/zenodo.XXXXXX](https://doi.org/10.5281/zenodo.XXXXXX) -->
+If you use nf-core/bacmodel for your analysis, please cite it using the following doi: [10.5281/zenodo.23808234](https://doi.org/10.5281/zenodo.23808234)
 
 If you use nf-core/bacmodel for your analysis, please cite the pipeline along with the tools it uses. A full list of references for the tools and data used by the pipeline can be found in the [`CITATIONS.md`](CITATIONS.md) file.
 
diff --git a/nextflow.config b/nextflow.config
index d4c1a51..cc149f5 100644
--- a/nextflow.config
+++ b/nextflow.config
@@ -271,7 +271,7 @@ manifest {
     defaultBranch   = 'master'
     nextflowVersion = '!>=25.10.4'
     version         = '1.0.1'
-    doi             = ''
+    doi             = '10.5281/zenodo.23808234'
     diagram         = 'docs/images/nf-core-bacmodel_metro_map.svg'
 }