From 3d4d23f59ee2f9eb2993499d18510f41dc92f116 Mon Sep 17 00:00:00 2001
From: Nicolas Vannieuwkerke <nicolas.vannieuwkerke@ugent.be>
Date: Thu, 5 Mar 2026 15:57:50 +0100
Subject: [PATCH] strict syntax compatibility

---
 .github/workflows/nf-test.yml |  1 -
 main.nf                       | 13 +++++--------
 2 files changed, 5 insertions(+), 9 deletions(-)

diff --git a/.github/workflows/nf-test.yml b/.github/workflows/nf-test.yml
index d77a1c64..0c18ee7a 100644
--- a/.github/workflows/nf-test.yml
+++ b/.github/workflows/nf-test.yml
@@ -90,7 +90,6 @@ jobs:
       - name: Run nf-test
         id: run_nf_test
         uses: ./.github/actions/nf-test
-        continue-on-error: ${{ matrix.NXF_VER == 'latest-everything' }}
         env:
           NFT_WORKDIR: ${{ env.NFT_WORKDIR }}
           NXF_VERSION: ${{ matrix.NXF_VER }}
diff --git a/main.nf b/main.nf
index c8d77c79..32ee9feb 100644
--- a/main.nf
+++ b/main.nf
@@ -154,16 +154,14 @@ output {
     }
     sample_vcfs {
         path { meta, vcf, tbi ->
-            def base = "${meta.id}/${meta.id}${meta.variant_type ? '.' + meta.variant_type : ''}"
-            vcf >> "${base}.vcf.gz"
-            tbi >> "${base}.vcf.gz.tbi"
+            vcf >> "${meta.id}/${meta.id}${meta.variant_type ? '.' + meta.variant_type : ''}" + ".vcf.gz"
+            tbi >> "${meta.id}/${meta.id}${meta.variant_type ? '.' + meta.variant_type : ''}" + ".vcf.gz.tbi"
         }
     }
     family_vcfs {
         path { meta, vcf, tbi ->
-            def base = "${meta.id}/${meta.id}${meta.variant_type ? '.' + meta.variant_type : ''}"
-            vcf >> "${base}.vcf.gz"
-            tbi >> "${base}.vcf.gz.tbi"
+            vcf >> "${meta.id}/${meta.id}${meta.variant_type ? '.' + meta.variant_type : ''}" + ".vcf.gz"
+            tbi >> "${meta.id}/${meta.id}${meta.variant_type ? '.' + meta.variant_type : ''}" + ".vcf.gz.tbi"
         }
     }
     qdnaseq_out {
@@ -186,8 +184,7 @@ output {
     }
     bedpe {
         path { meta, bedpe ->
-            def base = "${meta.id}/${meta.id}${meta.variant_type ? '.' + meta.variant_type : ''}"
-            bedpe >> "${base}.bedpe"
+            bedpe >> "${meta.id}/${meta.id}${meta.variant_type ? '.' + meta.variant_type : ''}" + ".bedpe"
         }
     }
     multiqc {