diff --git a/builds/ZIKA.md b/builds/ZIKA.md
index 3d0ef9a4..977b6ca8 100644
--- a/builds/ZIKA.md
+++ b/builds/ZIKA.md
@@ -1,93 +1,46 @@
 # ZIKA Pipeline Notes
 
-## Setup
+## Ingest data from NCBI GenBank
 
-1. Make sure environment variables for connecting to fauna are set.
-
-## Upload via ViPR and update citations
-
-### [ViPR sequences](https://www.viprbrc.org/brc/vipr_genome_search.spg?method=ShowCleanSearch&decorator=flavi_zika)
-
-1. Download sequences
-  * Select year >= 2013 and genome length >= 5000
-  * Download as Genome Fasta
-  * Set Custom Format Fields to 0: GenBank Accession, 1: Strain Name, 2: Segment, 3: Date, 4: Host, 5: Country, 6: Subtype, 7: Virus Species
-  * May also use the [ViPR API](https://www.viprbrc.org/brc/staticContent.spg?decorator=reo&type=ViprInfo&subtype=API)
-
-  ```
-  curl "https://www.viprbrc.org/brc/api/sequence?datatype=genome&family=flavi&species=Zika%20virus&fromyear=2013&minlength=5000&metadata=genbank,strainname,segment,date,host,country,genotype,species&output=fasta" |\
-  tr '-' '_' |\
-  tr ' ' '_' |\
-  sed 's:N/A:NA:g' >\
-  GenomicFastaResults.fasta
-  ```
-  
-  The search-and-replace commands (`tr`, `sed`) are necessary because the API downloads fasta headers similar to:
-
-  `>KY241742|ZIKV_SG_072|N/A|2016-08-28|Human|Singapore|Asian|Zika virus`
-  
-  but need to match the GUI downloaded headers similar to: 
-  
-  `>KY241742|ZIKV_SG_072|NA|2016_08_28|Human|Singapore|Asian|Zika_virus`
-
-
-2. Move downloaded sequences to `fauna/data`
-3. Extract `GenomicFastaResults.tar.gz` and rename the extracted file to `GenomicFastaResults.fasta`
-4. Upload to vdb database
-  * `python3 vdb/zika_upload.py -db vdb -v zika --source genbank --locus genome --fname GenomicFastaResults.fasta`
-
-### Update
-
-* Update citation fields
-  * `python3 vdb/zika_update.py -db vdb -v zika --update_citations`
-  * updates `authors`, `title`, `url`, `journal` and `puburl` fields from genbank files
-  * If you get `ERROR: Couldn't connect with entrez, please run again` just run command again
-
-## Download from Fauna, parse, compress and push to S3
-
-### Download from Fauna
+Navigate to the nextstrain/zika repository and [follow the instructions for ingest](https://github.com/nextstrain/zika/tree/persephone/ingest).
 
 ```
-python3 vdb/download.py \
-  --database vdb \
-  --virus zika \
-  --fasta_fields strain virus accession collection_date region country division location source locus authors url title journal puburl \
-  --resolve_method choose_genbank \
-  --fstem zika
+git clone https://github.com/nextstrain/zika.git
+cd zika
+git checkout persephone
+cd ingest
+nextstrain build .
 ```
 
-This results in the file `data/zika.fasta` with FASTA header ordered as above.
+This results in the files `results/metadata.tsv` and `results/sequences.fasta`
 
-### Parse
+## Compress
 
 ```
-augur parse \
-  --sequences data/zika.fasta \
-  --output-sequences data/sequences.fasta \
-  --output-metadata data/metadata.tsv \
-  --fields strain virus accession date region country division city db segment authors url title journal paper_url \
-  --prettify-fields region country division city
+zstd -T0 results/sequences.fasta
+zstd -T0 results/metadata.tsv
 ```
 
-This results in the files `data/sequences.fasta` and `data/metadata.tsv`.
-
-### Compress
+This results in the files `results/sequences.fasta.zst` and `results/metadata.tsv.zst`.
 
-```
-zstd -T0 data/sequences.fasta
-zstd -T0 data/metadata.tsv
-```
+## Upload data to s3
 
-This results in the files `data/sequences.fasta.zst` and `data/metadata.tsv.zst`.
-
-### Push to S3
+> [!NOTE]
+> Make sure [authentication for the S3 remote](https://docs.nextstrain.org/projects/cli/en/stable/remotes/s3/#authentication) is configured.
 
 ```
-nextstrain remote upload s3://nextstrain-data/files/zika/ data/sequences.fasta.zst data/metadata.tsv.zst
+nextstrain remote upload s3://nextstrain-data/files/zika/ results/sequences.fasta.zst
+nextstrain remote upload s3://nextstrain-data/files/zika/ results/metadata.tsv.zst
 ```
 
 This pushes files to S3 to be made available at https://data.nextstrain.org/files/zika/sequences.fasta.zst and https://data.nextstrain.org/files/zika/metadata.tsv.zst.
 
 ## Run zika workflow
 
-See instructions at https://github.com/nextstrain/zika.
+See instructions at https://github.com/nextstrain/zika/tree/persephone/phylogenetic
+
+```
+cd ../phylogenetic
+mv ingest/results data
+nextstrain build .
+```