From c30d37c1bf29debcbe468f15f6e4ae4347c8270e Mon Sep 17 00:00:00 2001 From: Jennifer Chang Date: Tue, 17 Oct 2023 11:09:43 -0700 Subject: [PATCH] doc: transition from ncbi virus to ncbi datasets --- src/snippets/ambient-setup.rst | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/src/snippets/ambient-setup.rst b/src/snippets/ambient-setup.rst index ed3e3572..563ccd85 100644 --- a/src/snippets/ambient-setup.rst +++ b/src/snippets/ambient-setup.rst @@ -15,7 +15,8 @@ conda install --override-channels --strict-channel-priority \ -c conda-forge -c bioconda --yes \ augur auspice nextalign nextclade \ - snakemake git epiweeks pangolin pangolearn + snakemake git epiweeks pangolin pangolearn \ + ncbi-datasets-cli 3. Set the runtime: