I tried to simulate 1000 Inverted Duplication (IDUP) events with PacBio reads using hg38 genome, but the reads do not seem to contain any such events. I aligned the reads with pbmm2, and can't see any abnormality at the simulated IDUP sites. I also simulated the same number of insertion, deletion, duplication, inversion, and CSUB events. These other SV events work without any issues. Please help.
I tried to simulate 1000 Inverted Duplication (IDUP) events with PacBio reads using hg38 genome, but the reads do not seem to contain any such events. I aligned the reads with pbmm2, and can't see any abnormality at the simulated IDUP sites. I also simulated the same number of insertion, deletion, duplication, inversion, and CSUB events. These other SV events work without any issues. Please help.