keep_samples fails if $data and $sample_data order don't match

[AlexaBennett]

keep_samples fails when the ft$sample_data table sample order doesn't match the ft$data sample order. It will retain the incorrect within the sample_data table.

Original observation with phoD dataset.

[mooreryan]

Would be able to create a reprex for this issue?

[AlexaBennett]

I promise I am not ignoring you; this is on my TODO list!