pip install gives error: igv.jar can't be copied

[npklein]

When I try to install igv_plotter with pip install igv_plotter I get the error that igv.jar can not be copied. See below for full log

[umcg-ndeklein@calculon custom]$ pip install igv_plotter
Collecting igv_plotter
Using cached igv_plotter-0.9.5.tar.gz
Collecting xvfbwrapper (from igv_plotter)
Cache entry deserialization failed, entry ignored
Cache entry deserialization failed, entry ignored
Downloading xvfbwrapper-0.2.8.tar.gz
Collecting configargparse (from igv_plotter)
Cache entry deserialization failed, entry ignored
Cache entry deserialization failed, entry ignored
Downloading ConfigArgParse-0.10.0.tar.gz
Collecting flask (from igv_plotter)
Cache entry deserialization failed, entry ignored
Cache entry deserialization failed, entry ignored
Downloading Flask-0.11.1-py2.py3-none-any.whl (80kB)
100% |████████████████████████████████| 81kB 3.6MB/s
Collecting Werkzeug>=0.7 (from flask->igv_plotter)
Cache entry deserialization failed, entry ignored
Cache entry deserialization failed, entry ignored
Downloading Werkzeug-0.11.10-py2.py3-none-any.whl (306kB)
100% |████████████████████████████████| 307kB 2.7MB/s
Collecting itsdangerous>=0.21 (from flask->igv_plotter)
Cache entry deserialization failed, entry ignored
Cache entry deserialization failed, entry ignored
Downloading itsdangerous-0.24.tar.gz (46kB)
100% |████████████████████████████████| 51kB 3.2MB/s
Collecting click>=2.0 (from flask->igv_plotter)
Cache entry deserialization failed, entry ignored
Cache entry deserialization failed, entry ignored
Downloading click-6.6.tar.gz (283kB)
100% |████████████████████████████████| 286kB 2.7MB/s
Collecting Jinja2>=2.4 (from flask->igv_plotter)
Cache entry deserialization failed, entry ignored
Cache entry deserialization failed, entry ignored
Downloading Jinja2-2.8-py2.py3-none-any.whl (263kB)
100% |████████████████████████████████| 266kB 3.9MB/s
Collecting MarkupSafe (from Jinja2>=2.4->flask->igv_plotter)
Cache entry deserialization failed, entry ignored
Cache entry deserialization failed, entry ignored
Downloading MarkupSafe-0.23.tar.gz
Installing collected packages: xvfbwrapper, configargparse, Werkzeug, itsdangerous, click, MarkupSafe, Jinja2, flask, igv-plotter
Running setup.py install for xvfbwrapper ... done
Running setup.py install for configargparse ... done
Running setup.py install for itsdangerous ... done
Running setup.py install for click ... done
Running setup.py install for MarkupSafe ... done
Running setup.py install for igv-plotter ... error
Complete output from command /apps/software/Python/3.4.1-goolf-1.7.20/bin/python -u -c "import setuptools, tokenize;file='/tmp/pip-build-gl96oqew/igv-plotter/setup.py';exec(compile(getattr(tokenize, 'open', open)(file).read().replace('\r\n', '\n'), file, 'exec'))" install --record /tmp/pip-pdyc2jfv-record/install-record.txt --single-version-externally-managed --compile:
running install
running build
running build_py
creating build
creating build/lib
copying igv_api.py -> build/lib
running egg_info
writing requirements to igv_plotter.egg-info/requires.txt
writing igv_plotter.egg-info/PKG-INFO
writing top-level names to igv_plotter.egg-info/top_level.txt
writing dependency_links to igv_plotter.egg-info/dependency_links.txt
warning: manifest_maker: standard file '-c' not found

reading manifest file 'igv_plotter.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
writing manifest file 'igv_plotter.egg-info/SOURCES.txt'
running build_scripts
creating build/scripts-3.4
copying and adjusting bin/igvweb_viewer -> build/scripts-3.4
copying and adjusting bin/igv_plotter -> build/scripts-3.4
copying and adjusting bin/igv -> build/scripts-3.4
changing mode of build/scripts-3.4/igvweb_viewer from 664 to 775
changing mode of build/scripts-3.4/igv_plotter from 664 to 775
changing mode of build/scripts-3.4/igv from 664 to 775
running install_lib
copying build/lib/igv_api.py -> /apps/software/Python/3.4.1-goolf-1.7.20/lib/python3.4/site-packages
byte-compiling /apps/software/Python/3.4.1-goolf-1.7.20/lib/python3.4/site-packages/igv_api.py to igv_api.cpython-34.pyc
running install_data
creating /apps/software/Python/3.4.1-goolf-1.7.20/igv.jar
error: can't copy 'lib/igv.jar': doesn't exist or not a regular file

----------------------------------------

Command "/apps/software/Python/3.4.1-goolf-1.7.20/bin/python -u -c "import setuptools, tokenize;file='/tmp/pip-build-gl96oqew/igv-plotter/setup.py';exec(compile(getattr(tokenize, 'open', open)(file).read().replace('\r\n', '\n'), file, 'exec'))" install --record /tmp/pip-pdyc2jfv-record/install-record.txt --single-version-externally-managed --compile" failed with error code 1 in /tmp/pip-build-gl96oqew/igv-plotter/
Cache entry deserialization failed, entry ignored

[murphycj]

Yes I get the same issue.