From 17a4114ff381bd4e1f570748cb1323e11a78d8f6 Mon Sep 17 00:00:00 2001
From: amidlige <31928641+amidlige@users.noreply.github.com>
Date: Thu, 26 Oct 2017 20:43:46 -0400
Subject: [PATCH] tutorial 8 part 1

---
 exercise8.py | 25 +++++++++++++++++++++++++
 1 file changed, 25 insertions(+)
 create mode 100644 exercise8.py

diff --git a/exercise8.py b/exercise8.py
new file mode 100644
index 0000000..59fa692
--- /dev/null
+++ b/exercise8.py
@@ -0,0 +1,25 @@
+import os
+import pandas
+import numpy
+
+vcffile = open("Cflorida.vcf","r")
+outfile = open("CfloridaCounts.txt","w")
+
+
+for line in vcffile:
+    
+    line = line.rstrip() 
+
+    var=re.match('[CFcf]\.[Aa]*?\.', line)
+    var.replace('var','Cf.Sfa') 
+    outfile.write(var)
+    var2=re.match('[CFcf]\.[Gg][Aa]?[Ii]?\.', line)
+    var2.replace('var2','Cf.Sfa') 
+    outfile.write(var2)
+    
+    var3=re.match([0-9],[0-9],line)
+    outfile.write(var3)
+   
+
+
+