diff --git a/exercise8.py b/exercise8.py new file mode 100644 index 0000000..59fa692 --- /dev/null +++ b/exercise8.py @@ -0,0 +1,25 @@ +import os +import pandas +import numpy + +vcffile = open("Cflorida.vcf","r") +outfile = open("CfloridaCounts.txt","w") + + +for line in vcffile: + + line = line.rstrip() + + var=re.match('[CFcf]\.[Aa]*?\.', line) + var.replace('var','Cf.Sfa') + outfile.write(var) + var2=re.match('[CFcf]\.[Gg][Aa]?[Ii]?\.', line) + var2.replace('var2','Cf.Sfa') + outfile.write(var2) + + var3=re.match([0-9],[0-9],line) + outfile.write(var3) + + + +