diff --git a/build.xml b/build.xml
index 85ee2c0..12a3c99 100644
--- a/build.xml
+++ b/build.xml
@@ -117,7 +117,7 @@
Downloading dependencies...
BDSKY:
-
@@ -191,7 +191,7 @@
-
+
@@ -217,7 +217,7 @@
-
+
diff --git a/examples/smoothingpriors/comparison/hcv_bdsky.xml b/examples/smoothingpriors/comparison/hcv_bdsky.xml
index 3586c09..cb78bdf 100644
--- a/examples/smoothingpriors/comparison/hcv_bdsky.xml
+++ b/examples/smoothingpriors/comparison/hcv_bdsky.xml
@@ -1,5 +1,5 @@
-beast.math.distributions.Uniform
-
-
-
-
-
-
-
-
-
+
+
+
+
+
+
+
+
+
+
@@ -119,21 +119,21 @@
-
+
1.0
-
+
-
+
-
+
@@ -202,7 +202,7 @@
-
+
7.9E-4
@@ -267,21 +267,21 @@
-
+
-
+
-
+
-
+
@@ -295,7 +295,7 @@
diff --git a/examples/smoothingpriors/ouprior_test1.xml b/examples/smoothingpriors/ouprior_test1.xml
index 7bc36a6..f45283a 100644
--- a/examples/smoothingpriors/ouprior_test1.xml
+++ b/examples/smoothingpriors/ouprior_test1.xml
@@ -1,5 +1,5 @@
+ namespace='beast.pkgmgmt:beast.base.core:beast.base.inference:beast.base.evolution.speciation:beast.base.util:beast.base.math:beast.evolution.nuc:beast.base.evolution.operator:beast.base.inference.operator:beast.base.evolution.sitemodel:beast.base.math.distributions:beast.base.evolution.branchratemodel:beast.base.evolution.likelihood:beast.base.inference.parameter:skylinetools.distributions'>
diff --git a/examples/smoothingpriors/ouprior_test2.xml b/examples/smoothingpriors/ouprior_test2.xml
index 1b11c9a..21ca903 100644
--- a/examples/smoothingpriors/ouprior_test2.xml
+++ b/examples/smoothingpriors/ouprior_test2.xml
@@ -1,5 +1,5 @@
+ namespace='beast.pkgmgmt:beast.base.core:beast.base.inference:beast.base.evolution.speciation:beast.base.util:beast.base.math:beast.evolution.nuc:beast.base.evolution.operator:beast.base.inference.operator:beast.base.evolution.sitemodel:beast.base.math.distributions:beast.base.evolution.branchratemodel:beast.base.evolution.likelihood:beast.base.inference.parameter:skylinetools.distributions'>
diff --git a/examples/smoothingpriors/ouprior_test3.xml b/examples/smoothingpriors/ouprior_test3.xml
index acfae63..b06e991 100644
--- a/examples/smoothingpriors/ouprior_test3.xml
+++ b/examples/smoothingpriors/ouprior_test3.xml
@@ -1,18 +1,18 @@
+ namespace='beast.pkgmgmt:beast.base.core:beast.base.inference:beast.base.evolution.speciation:beast.base.util:beast.base.math:beast.evolution.nuc:beast.base.evolution.operator:beast.base.inference.operator:beast.base.evolution.sitemodel:beast.base.math.distributions:beast.base.evolution.branchratemodel:beast.base.evolution.likelihood:beast.base.inference.parameter:skylinetools.distributions'>
-
-
-
-
-
-
-
-
-
-
+
+
+
+
+
+
+
+
+
+
@@ -29,7 +29,7 @@
-
+
diff --git a/examples/smoothingpriors/ouprior_test4.xml b/examples/smoothingpriors/ouprior_test4.xml
index 88e8421..b7423be 100644
--- a/examples/smoothingpriors/ouprior_test4.xml
+++ b/examples/smoothingpriors/ouprior_test4.xml
@@ -1,18 +1,18 @@
+ namespace='beast.pkgmgmt:beast.base.core:beast.base.inference:beast.base.evolution.speciation:beast.base.util:beast.base.math:beast.evolution.nuc:beast.base.evolution.operator:beast.base.inference.operator:beast.base.evolution.sitemodel:beast.base.math.distributions:beast.base.evolution.branchratemodel:beast.base.evolution.likelihood:beast.base.inference.parameter:skylinetools.distributions:skylinetools.parameter'>
-
-
-
-
-
-
-
-
-
-
+
+
+
+
+
+
+
+
+
+
diff --git a/examples/smoothingpriors/ouprior_test5.xml b/examples/smoothingpriors/ouprior_test5.xml
index f1fde50..94eb793 100644
--- a/examples/smoothingpriors/ouprior_test5.xml
+++ b/examples/smoothingpriors/ouprior_test5.xml
@@ -1,5 +1,5 @@
+ namespace='beast.pkgmgmt:beast.base.core:beast.base.inference:beast.base.evolution.speciation:beast.base.util:beast.base.math:beast.evolution.nuc:beast.base.evolution.operator:beast.base.inference.operator:beast.base.evolution.sitemodel:beast.base.math.distributions:beast.base.evolution.branchratemodel:beast.base.evolution.likelihood:beast.base.inference.parameter:skylinetools.distributions:skylinetools.parameter'>
diff --git a/src/beast/evolution/speciation/BirthDeathSkylineModelTestHelper.java b/src/beast/evolution/speciation/BirthDeathSkylineModelTestHelper.java
index 470e567..38dfe57 100755
--- a/src/beast/evolution/speciation/BirthDeathSkylineModelTestHelper.java
+++ b/src/beast/evolution/speciation/BirthDeathSkylineModelTestHelper.java
@@ -1,5 +1,6 @@
package beast.evolution.speciation;
+import bdsky.evolution.speciation.BirthDeathSkylineModel;
import java.util.List;
/**
@@ -17,4 +18,4 @@ public class BirthDeathSkylineModelTestHelper extends BirthDeathSkylineModel {
public List rChangeTimes() { return rChangeTimes; }
-}
\ No newline at end of file
+}
diff --git a/src/skylinetools/distributions/BMPrior.java b/src/skylinetools/distributions/BMPrior.java
index 64d45f0..30e60ef 100644
--- a/src/skylinetools/distributions/BMPrior.java
+++ b/src/skylinetools/distributions/BMPrior.java
@@ -1,11 +1,11 @@
package skylinetools.distributions;
-import beast.core.Distribution;
-import beast.core.Function;
-import beast.core.Input;
-import beast.core.State;
-import beast.core.parameter.RealParameter;
-import beast.math.distributions.ParametricDistribution;
+import beast.base.inference.Distribution;
+import beast.base.core.Function;
+import beast.base.core.Input;
+import beast.base.inference.State;
+import beast.base.inference.parameter.RealParameter;
+import beast.base.inference.distribution.ParametricDistribution;
import java.util.List;
import java.util.Random;
diff --git a/src/skylinetools/distributions/OUPrior.java b/src/skylinetools/distributions/OUPrior.java
index 4a452c0..e2e85e0 100644
--- a/src/skylinetools/distributions/OUPrior.java
+++ b/src/skylinetools/distributions/OUPrior.java
@@ -1,11 +1,11 @@
package skylinetools.distributions;
-import beast.core.Distribution;
-import beast.core.Function;
-import beast.core.Input;
-import beast.core.State;
-import beast.core.parameter.RealParameter;
-import beast.math.distributions.ParametricDistribution;
+import beast.base.inference.Distribution;
+import beast.base.core.Function;
+import beast.base.core.Input;
+import beast.base.inference.State;
+import beast.base.inference.parameter.RealParameter;
+import beast.base.inference.distribution.ParametricDistribution;
import java.util.Arrays;
import java.util.List;
diff --git a/src/skylinetools/parameter/DateParser.java b/src/skylinetools/parameter/DateParser.java
index 5ced97a..1fb2913 100644
--- a/src/skylinetools/parameter/DateParser.java
+++ b/src/skylinetools/parameter/DateParser.java
@@ -1,8 +1,8 @@
package skylinetools.parameter;
-import beast.core.Input;
-import beast.core.parameter.RealParameter;
-import beast.core.util.Log;
+import beast.base.core.Input;
+import beast.base.inference.parameter.RealParameter;
+import beast.base.core.Log;
import java.time.LocalDate;
import java.time.format.DateTimeFormatter;
diff --git a/src/skylinetools/parameter/RealParameterSequence.java b/src/skylinetools/parameter/RealParameterSequence.java
index c771e2b..9039520 100644
--- a/src/skylinetools/parameter/RealParameterSequence.java
+++ b/src/skylinetools/parameter/RealParameterSequence.java
@@ -1,8 +1,8 @@
package skylinetools.parameter;
-import beast.core.Description;
-import beast.core.Input;
-import beast.core.parameter.RealParameter;
+import beast.base.core.Description;
+import beast.base.core.Input;
+import beast.base.inference.parameter.RealParameter;
import java.util.Arrays;
diff --git a/src/skylinetools/util/TreeDateLogger.java b/src/skylinetools/util/TreeDateLogger.java
index d52c2f6..b009947 100644
--- a/src/skylinetools/util/TreeDateLogger.java
+++ b/src/skylinetools/util/TreeDateLogger.java
@@ -1,12 +1,12 @@
package skylinetools.util;
-import beast.core.CalculationNode;
-import beast.core.Function;
-import beast.core.Input;
-import beast.core.Loggable;
-import beast.core.parameter.RealParameter;
-import beast.core.util.Log;
-import beast.evolution.tree.Tree;
+import beast.base.inference.CalculationNode;
+import beast.base.core.Function;
+import beast.base.core.Input;
+import beast.base.core.Loggable;
+import beast.base.inference.parameter.RealParameter;
+import beast.base.core.Log;
+import beast.base.evolution.tree.Tree;
import java.io.PrintStream;
diff --git a/src/skylinetools/util/TreeDateSlicer.java b/src/skylinetools/util/TreeDateSlicer.java
index 2be3f76..e764171 100644
--- a/src/skylinetools/util/TreeDateSlicer.java
+++ b/src/skylinetools/util/TreeDateSlicer.java
@@ -1,9 +1,9 @@
package skylinetools.util;
-import beast.core.Function;
-import beast.core.Input;
-import beast.evolution.tree.Tree;
-import beast.util.HeapSort;
+import beast.base.core.Function;
+import beast.base.core.Input;
+import beast.base.evolution.tree.Tree;
+import beast.base.util.HeapSort;
import java.util.Arrays;
diff --git a/src/skylinetools/util/TreeSliceDateLogger.java b/src/skylinetools/util/TreeSliceDateLogger.java
index ddb6942..6c49816 100644
--- a/src/skylinetools/util/TreeSliceDateLogger.java
+++ b/src/skylinetools/util/TreeSliceDateLogger.java
@@ -1,9 +1,9 @@
package skylinetools.util;
-import beast.core.CalculationNode;
-import beast.core.Function;
-import beast.core.Input;
-import beast.core.Loggable;
+import beast.base.inference.CalculationNode;
+import beast.base.core.Function;
+import beast.base.core.Input;
+import beast.base.core.Loggable;
import java.io.PrintStream;
diff --git a/src/skylinetools/util/TreeSlicer.java b/src/skylinetools/util/TreeSlicer.java
index adb1b23..7923f92 100644
--- a/src/skylinetools/util/TreeSlicer.java
+++ b/src/skylinetools/util/TreeSlicer.java
@@ -1,11 +1,11 @@
package skylinetools.util;
-import beast.core.*;
-import beast.core.parameter.Parameter;
-import beast.core.parameter.RealParameter;
-import beast.evolution.tree.Node;
-import beast.evolution.tree.Tree;
-import beast.util.HeapSort;
+import beast.base.core.*;
+import beast.base.inference.parameter.Parameter;
+import beast.base.inference.parameter.RealParameter;
+import beast.base.evolution.tree.Node;
+import beast.base.evolution.tree.Tree;
+import beast.base.util.HeapSort;
import java.util.ArrayList;
import java.util.Arrays;
diff --git a/test/beast/evolution/speciation/SkylineTimesTest.java b/test/beast/evolution/speciation/SkylineTimesTest.java
index 42b881f..c47aa65 100755
--- a/test/beast/evolution/speciation/SkylineTimesTest.java
+++ b/test/beast/evolution/speciation/SkylineTimesTest.java
@@ -1,17 +1,17 @@
package beast.evolution.speciation;
-import beast.core.parameter.BooleanParameter;
-import beast.core.parameter.RealParameter;
-import beast.evolution.speciation.BirthDeathSkylineModelTestHelper;
-import beast.evolution.tree.Tree;
-import beast.util.TreeParser;
+import beast.base.inference.parameter.BooleanParameter;
+import beast.base.inference.parameter.RealParameter;
+import bdsky.evolution.speciation.BirthDeathSkylineModelTestHelper;
+import beast.base.evolution.tree.Tree;
+import beast.base.evolution.tree.TreeParser;
import org.junit.Test;
import junit.framework.TestCase;
import java.util.List;
/**
- * This test is to check how bdsky (beast.evolution.speciation.BirthDeathSkylineModel) sets change-point times, depending
+ * This test is to check how bdsky (bdsky.evolution.speciation.BirthDeathSkylineModel) sets change-point times, depending
* on the input.
*
* There are 5 different ways to set the change-point times:
diff --git a/test/skylinetools/distributions/OUPriorLkTest.java b/test/skylinetools/distributions/OUPriorLkTest.java
index 4fb983a..663027c 100644
--- a/test/skylinetools/distributions/OUPriorLkTest.java
+++ b/test/skylinetools/distributions/OUPriorLkTest.java
@@ -1,6 +1,6 @@
package skylinetools.distributions;
-import beast.core.parameter.RealParameter;
+import beast.base.inference.parameter.RealParameter;
import junit.framework.TestCase;
import org.junit.Test;
import skylinetools.distributions.OUPrior;
diff --git a/test/skylinetools/util/TreeDateSlicerTest.java b/test/skylinetools/util/TreeDateSlicerTest.java
index 12be810..305b5be 100644
--- a/test/skylinetools/util/TreeDateSlicerTest.java
+++ b/test/skylinetools/util/TreeDateSlicerTest.java
@@ -1,10 +1,10 @@
package skylinetools.util;
-import beast.evolution.alignment.Taxon;
-import beast.evolution.alignment.TaxonSet;
-import beast.evolution.tree.TraitSet;
-import beast.evolution.tree.Tree;
-import beast.util.TreeParser;
+import beast.base.evolution.alignment.Taxon;
+import beast.base.evolution.alignment.TaxonSet;
+import beast.base.evolution.tree.TraitSet;
+import beast.base.evolution.tree.Tree;
+import beast.base.evolution.tree.TreeParser;
import junit.framework.TestCase;
import org.junit.Test;
import skylinetools.parameter.DateParser;
diff --git a/test/skylinetools/util/TreeSlicerTest.java b/test/skylinetools/util/TreeSlicerTest.java
index 61c0e46..4613fff 100644
--- a/test/skylinetools/util/TreeSlicerTest.java
+++ b/test/skylinetools/util/TreeSlicerTest.java
@@ -1,7 +1,7 @@
package skylinetools.util;
-import beast.evolution.tree.Tree;
-import beast.util.TreeParser;
+import beast.base.evolution.tree.Tree;
+import beast.base.evolution.tree.TreeParser;
import junit.framework.TestCase;
import org.junit.Test;
import test.beast.BEASTTestCase;
diff --git a/version.xml b/version.xml
index 7311e37..3b29826 100644
--- a/version.xml
+++ b/version.xml
@@ -1,7 +1,11 @@
-
-
-
+
+
+
+
-
-
-
+
+
+
+
+
+