不能指定范围作图

[shaoxiong2588]

coding gene

trancriptVis(gtfFile = gtf1,
Chr = 17,
posStart = 36783355,
posEnd = 36783400)
Error in map():
ℹ In index: 1.
Caused by error in dplyr::filter():
ℹ In argument: gene_id == gid[x].
Caused by error:
! object 'gene_id' not found
Run rlang::last_trace() to see where the error occurred.
Warning message:
Unknown or uninitialised column: gene_id.

I am encountering an issue with the trancriptVis function. The error suggests that it cannot find the 'gene_id' column, even though the column does exist in my data. I have checked the data structure, case sensitivity, and library loading. How can I resolve this issue? Running rlang::last_trace() did not provide additional insights. Any help would be appreciated.

[BinZheng1998]

同问

[BinZheng1998]

trancriptVis(gtfFile = gtf,

•         Chr = 'chr2',
  

•         posStart = 1427100000,
  

•         posEnd = 1427600000) 
  

Error in map():
ℹ In index: 1.
Caused by error in dplyr::filter():
ℹ In argument: gene_id == gid[x].
Caused by error:
! 找不到对象'gene_id'
Run rlang::last_trace() to see where the error occurred.
Warning message:
Unknown or uninitialised column: gene_id.

[junjunlab]

数据代码发我看看

[jihui-boop]

gtf <- import("D:/Desktop/Sus_scrofa.Sscrofa11.1.100.gtf")
gtf_df <- as.data.frame(gtf)
trancriptVis(gtfFile = gtf_df,

•          gene = 'ENSSSCG00000027778',
  

•          textLabel = 'gene_name')
  

Error in map():
ℹ In index: 1.
Caused by error in dplyr::filter():
ℹ In argument: gene_id == gid[x].
Caused by error:
! 找不到对象'gene_id'
Run rlang::last_trace() to see where the error occurred.
警告信息:
Unknown or uninitialised column: gene_id. 你好我也出现了这个问题