python-setup.txt

python3.14 -m venv .venv
source .venv/bin/activate
pip install --upgrade pip
pip install jupyter matplotlib pandas statsmodels


# for pandas.df.to_markdown
pip install tabulate

# for Chapter 10, forecasting using Facebook Prophet
pip install pystan prophet plotly

# for Chapter 10, LSTM
pip install scikit-learn torch

# if using keras; but we currently only use pytorch
# pip install tensorflow

# for calling R when needed
pip install rpy2

# for POMP models in the second half of the course
pip install pypomp
# this will install jax, but if working on a gpu we need jax with cuda
# pip install jax[cuda12]

# for Chapter 17, stochastic volatility
pip install arch

# convenient for accessing quarto on greatlakes
pip install quarto-cli

# for SBIED measles
pip install geopandas cartopy