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error with Transit2 #2
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Description
Hi I'm having a problem trying to run Transit2.
Can you provide some solution for this error?
Best wishes
log:
Running in GUI Mode
wx._core.wxAssertionError: C++ assertion "!IsModal()" failed at /tmp/pip-install-h3_z6p37/wxpython_a300000004ff4450a65f01267958e3b4/ext/wxWidgets/src/gtk/dialog.cpp(133) in ShowModal(): ShowModal() can't be called twice
The above exception was the direct cause of the following exception:
SystemError: <class 'wx._core.FocusEvent'> returned a result with an exception set
wx._core.wxAssertionError: C++ assertion "!IsModal()" failed at /tmp/pip-install-h3_z6p37/wxpython_a300000004ff4450a65f01267958e3b4/ext/wxWidgets/src/gtk/dialog.cpp(133) in ShowModal(): ShowModal() can't be called twice
The above exception was the direct cause of the following exception:
SystemError: <class 'wx._core.EraseEvent'> returned a result with an exception set
[transit_tools:__enter__()] Starting CombinedWig analysis
[combined_wig:output()] Starting Combined Wig Export
[combined_wig:output()] Getting Data
[combined_wig:output()] Normalizing
File "/home/mauricio/.local/lib/python3.10/site-packages/pytransit/components/panel_helpers.py", line 95, in wrapper
return func(*args,**kwargs)
File "/home/mauricio/.local/lib/python3.10/site-packages/pytransit/methods/combined_wig.py", line 85, in when_button_clicked
Method.output(
File "/home/mauricio/.local/lib/python3.10/site-packages/pytransit/methods/combined_wig.py", line 103, in output
with transit_tools.TimerAndOutputs(method_name=Method.identifier, output_paths=[output_path], disable=disable_logging) as timer:
File "/home/mauricio/.local/lib/python3.10/site-packages/pytransit/specific_tools/transit_tools.py", line 278, in __exit__
raise error
File "/home/mauricio/.local/lib/python3.10/site-packages/pytransit/methods/combined_wig.py", line 130, in output
rv2info = tnseq_tools.AnnotationFile(path=annotation_path).orf_to_info
File "/home/mauricio/.local/lib/python3.10/site-packages/pytransit/specific_tools/tnseq_tools.py", line 2462, in __init__
for key, value in GffFile.extract_gene_info(path).items()
File "/home/mauricio/.local/lib/python3.10/site-packages/pytransit/specific_tools/tnseq_tools.py", line 2667, in extract_gene_info
for description, start, end, strand, size, _, _, gene_name, orf_id, _ in gff_data.as_prot_table_rows:
'method' object is not iterable
Traceback (most recent call last):
File "/home/mauricio/.local/lib/python3.10/site-packages/pytransit/components/panel_helpers.py", line 95, in wrapper
return func(*args,**kwargs)
File "/home/mauricio/.local/lib/python3.10/site-packages/pytransit/methods/combined_wig.py", line 85, in when_button_clicked
Method.output(
File "/home/mauricio/.local/lib/python3.10/site-packages/pytransit/methods/combined_wig.py", line 103, in output
with transit_tools.TimerAndOutputs(method_name=Method.identifier, output_paths=[output_path], disable=disable_logging) as timer:
File "/home/mauricio/.local/lib/python3.10/site-packages/pytransit/specific_tools/transit_tools.py", line 278, in __exit__
raise error
File "/home/mauricio/.local/lib/python3.10/site-packages/pytransit/methods/combined_wig.py", line 130, in output
rv2info = tnseq_tools.AnnotationFile(path=annotation_path).orf_to_info
File "/home/mauricio/.local/lib/python3.10/site-packages/pytransit/specific_tools/tnseq_tools.py", line 2462, in __init__
for key, value in GffFile.extract_gene_info(path).items()
File "/home/mauricio/.local/lib/python3.10/site-packages/pytransit/specific_tools/tnseq_tools.py", line 2667, in extract_gene_info
for description, start, end, strand, size, _, _, gene_name, orf_id, _ in gff_data.as_prot_table_rows:
TypeError: 'method' object is not iterable
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