Thank you for developing f5c! Pardon me if this information is already somewhere.
I used f5c resquiggle with the -c tag to output a paf file, here is a snippet of that paf file:
fefc231f-98bd-4a84-ac3d-4839426547c7 14675 2302 14675 + fefc231f-98bd-4a84-ac3d-4839426547c7 363 363 0 355 363 255 sc:f:0.000000 sh:f:0.000000 ss:Z:1520,42,13,25,7,15,23,10,99,24,21,23,27,19,18,46,21,8,84,37,8,30,35,43,61,96,23,18,19,38,41,49,33,43,23,11,25,11,30,30,53,16,20,215,25,36,15,14,52,94,7,68,59,16,28,28,10,11,7,11,122,5,24,35,37,17,27,1D21,10,14,13,12,19,18,125,13,26,57,21,7,6,96,120,10,33,71,27,65,16,8,73,10,28,6,24,87,15,31,28,48,12,58,7,7,138,54,7,35,108,270,27,18,23,34,12,1D23,29,22,1D14,1D17,51,15,12,38,27,22,19,5,25,14,48,19,15,45,20,51,21,45,23,33,34,16,32,14,100,19,18,82,19,88,15,16,8,33,30,37,34,11,30,33,31,8,47,8,22,7,41,22,14,122,26,23,22,11,15,18,13,20,18,38,22,13,27,16,36,20,22,22,30,28,14,39,288,21,15,17,10,23,11,15,19,21,40,8,15,16,32,19,18,17,37,21,21,48,18,25,52,7,13,29,17,57,35,12,32,13,69,117,11,115,19,20,31,17,14,39,15,41,15,25,14,26,63,95,24,16,1D56,17,22,20,11,7,40,20,7,55,18,7,23,25,25,19,24,16,34,37,26,7,8,53,25,27,16,18,16,36,8,44,22,5,10,103,32,18,41,23,14,17,29,21,18,33,25,15,20,10,44,1D58,8,7,7,21,45,42,32,8,29,23,23,63,10,13,7,1D95,23,12,29,36,1D10,7,17,14,8,13,11,17,18,8,22,54,54,9,21,23,62,17,32,14,43,17,7,6,6,25,19,17,44,10,14,26,13,59,10,26,8,
eb6457f4-0c62-4e47-b23c-b247ca4ff99e 14522 1113 14522 + eb6457f4-0c62-4e47-b23c-b247ca4ff99e 259 259 0 253 259 255 sc:f:-0.000000 sh:f:0.000000 ss:Z:2654,1528,38,1126,20,8,20,29,19,27,145,34,13,23,116,55,7,27,34,21,30,5,13,49,102,17,23,25,6,27,8,110,16,14,26,52,41,26,7,7,17,12,23,43,19,12,1D137,7,96,20,10,10,76,19,47,18,57,45,13,35,13,15,61,109,16,15,11,59,142,12,15,33,139,18,7,12,49,7,8,10,7,5,27,59,20,17,36,45,25,20,16,26,38,44,31,23,86,142,23,15,58,1D11,26,17,42,8,78,36,32,24,34,11,30,8,28,29,14,19,16,33,34,20,35,11,15,65,11,43,26,56,82,38,7,33,63,30,19,24,14,13,20,15,7,27,42,22,12,30,8,1D37,35,10,81,22,59,13,11,16,14,8,7,10,39,9,7,134,22,11,25,31,23,16,32,17,28,54,17,7,27,21,10,33,23,9,77,80,16,52,33,23,30,44,37,21,8,11,12,9,22,19,18,40,28,21,88,36,15,10,13,13,12,53,27,180,14,46,297,44,19,7,9,44,16,16,18,1D68,1D29,14,22,34,24,8,80,54,17,11,15,16,29,22,10,133,16,12,23,15,23,12,24,62,15,9,1D20,
799073a0-c14e-4ac3-a461-c77b3b19c6e9 14238 1605 14238 + 799073a0-c14e-4ac3-a461-c77b3b19c6e9 295 295 0 290 295 255 sc:f:-0.000000 sh:f:0.000000 ss:Z:18,46,234,316,118,6,1D11,24,152,45,1629,44,10,51,509,13,12,7,17,22,25,15,40,12,30,14,77,43,26,77,9,9,10,11,21,69,11,1D8,10,10,76,94,47,68,17,27,48,22,22,23,6,13,13,79,14,15,21,37,21,25,47,7,72,148,22,23,15,14,44,33,26,27,35,23,79,24,68,51,31,7,61,126,7,10,39,12,183,53,40,9,24,51,10,41,10,43,64,36,8,24,51,36,7,9,459,22,44,12,29,41,38,11,17,44,5,7,9,40,22,19,8,8,36,74,33,48,10,21,38,23,68,19,11,42,97,82,153,56,14,23,18,47,45,42,7,56,21,11,36,31,21,10,26,14,27,11,7,33,8,42,13,8,90,36,13,74,33,79,30,8,15,22,36,17,19,40,50,50,97,14,27,112,94,19,12,51,38,30,40,11,55,37,25,50,40,28,6,23,12,54,69,12,15,1D16,23,48,10,17,11,1D19,24,14,7,45,61,127,27,13,1D62,8,8,30,57,45,27,27,44,13,10,145,21,46,25,142,29,13,7,37,64,11,25,64,15,35,20,11,23,76,7,64,7,9,13,8,73,7,65,13,9,19,17,26,10,42,13,40,17,18,14,12,26,13,15,39,15,13,60,17,11,9,7,14,37,26,49,30,14,9,14,61,
Hello there,
Thank you for developing f5c! Pardon me if this information is already somewhere.
I used f5c resquiggle with the -c tag to output a paf file, here is a snippet of that paf file:
It's fine that sh is 0, but when sc is 0 or -0, division over 0 doesn't work --- should i be treating this sc = 0 as a sc = 1 instead?
Reference: https://hasindu2008.github.io/f5c/docs/output#resquiggle-paf-output
Thank you!