cat per_site.means.txt | cut -f -8 | zjoin -a stdin -b <(cat overall_percentiles.txt | cut -f -8 ) -1 2 -2 1 | awk '{if($5>$11 && $5<$12 && $8>$15 && $8<$16) print $0}' | cut -f 1 | zjoin -a <(zcat sv.vcf.gz) -b stdin -1 3 -2 1 | svtools vcftobedpe | bgzip -c > training_vars.bedpe.gz
Q1:The sv.vcf.gz in this step is how to obtain the documents
Q2:How to install zjoin
THANKS
cat per_site.means.txt | cut -f -8 | zjoin -a stdin -b <(cat overall_percentiles.txt | cut -f -8 ) -1 2 -2 1 | awk '{if($5>$11 && $5<$12 && $8>$15 && $8<$16) print $0}' | cut -f 1 | zjoin -a <(zcat sv.vcf.gz) -b stdin -1 3 -2 1 | svtools vcftobedpe | bgzip -c > training_vars.bedpe.gz
Q1:The sv.vcf.gz in this step is how to obtain the documents
Q2:How to install zjoin
THANKS