diff --git a/CITATION.cff b/CITATION.cff new file mode 100644 index 0000000..0e00d6e --- /dev/null +++ b/CITATION.cff @@ -0,0 +1,27 @@ +authors: +- affiliation: Google (Switzerland) + family-names: Januszewski + given-names: "Micha\u0142" + orcid: 0000-0002-3480-2744 +- affiliation: Google (United States) + family-names: Blakely + given-names: Tim + orcid: 0000-0003-0995-5471 +- affiliation: Google (Switzerland) + family-names: Lueckmann + given-names: Jan-Matthis + orcid: 0000-0003-4320-4663 +cff-version: 1.2.0 +date-released: '2024-01-19' +doi: 10.5281/zenodo.10534541 +keywords: +- stitching +- microscopy +- montaging +- alignment +license: +- apache-2.0 +message: If you use this software, please cite it using the metadata from this file. +title: 'SOFIMA: Scalable Optical Flow-based Image Montaging and Alignment' +type: software +url: "https://github.com/google-research/sofima" diff --git a/README.md b/README.md index 046f6ad..bab9ffd 100644 --- a/README.md +++ b/README.md @@ -4,6 +4,9 @@ SOFIMA (Scalable Optical Flow-based Image Montaging and Alignment) is a tool for stitching, aligning and warping large 2d, 3d and 4d microscopy datasets. [![License](https://img.shields.io/badge/License-Apache%202.0-blue.svg)](https://opensource.org/licenses/Apache-2.0) +[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.10534541.svg)](https://zenodo.org/records/10534541) + +Please cite as https://zenodo.org/records/10534541 This is not an officially supported Google product. @@ -32,6 +35,13 @@ and the mesh node positions. * [electron microscopy tile stitching](https://colab.research.google.com/github/google-research/sofima/blob/main/notebooks/em_stitching.ipynb) * [electron microscopy section alignment](https://colab.research.google.com/github/google-research/sofima/blob/main/notebooks/em_alignment.ipynb) + * [LICONN 3d tile stitching](https://colab.research.google.com/github/google-research/sofima/blob/main/notebooks/liconn_inplane_stitching.ipynb) + +# Citation + +If you use this software in your research, please cite it using the following metadata: + +> Januszewski, M., Blakely, T., & Lueckmann, J.-M. (2024). SOFIMA: Scalable Optical Flow-based Image Montaging and Alignment. Zenodo. https://doi.org/10.5281/zenodo.10534541 # License