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{
"version": 2,
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"zenodo_doi": "10.5281/zenodo.19699639",
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"piaso_markerdb_allen_immune": {
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"adult_cortex_multiome_rna_cytome": {
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"reference": "Bravo González-Blas C, De Winter S, Hulselmans G, et al. SCENIC+: single-cell multiomic inference of enhancers and gene regulatory networks. Nat Methods 20, 1355-1367 (2023). https://doi.org/10.1038/s41592-023-01938-4",
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"title": "SEA-AD middle temporal gyrus, 20k nuclei (cytome)",
"description": "RNA only. `RNA_counts` holds raw UMIs, verified integer at conversion time.",
"reference": "Gabitto MI, Travaglini KJ, Rachleff VM, et al. Integrated multimodal cell atlas of Alzheimer's disease. Nat Neurosci 27, 2366-2383 (2024). https://doi.org/10.1038/s41593-024-01774-5",
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"allen_devvis_rna": {
"title": "Allen developing mouse visual cortex snRNA, 200k nuclei (cytome)",
"description": "RNA only. `RNA_counts` holds raw UMIs, verified integer at conversion time.",
"reference": "Gao Y, van Velthoven CTJ, Lee C, et al. Continuous cell-type diversification in mouse visual cortex development. Nature 647, 127-142 (2025). https://doi.org/10.1038/s41586-025-09644-1",
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"title": "Human developing cortex snRNA, 38 samples (cytome)",
"description": "RNA only. `RNA_counts` holds raw UMIs, verified integer at conversion time.",
"reference": "Wang L, Wang C, Moriano JA, et al. Molecular and cellular dynamics of the developing human neocortex. Nature 647, 169-178 (2025). https://doi.org/10.1038/s41586-024-08351-7",
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"humanlifespan_pfc_rna": {
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"description": "RNA only. `RNA_counts` holds raw UMIs, verified integer at conversion time.",
"reference": "Catching A, Weller CA, Hu F, et al. Single-nucleus multiome analysis in the human prefrontal cortex identifies gene expression and cis-regulatory elements associated with aging. Cell Reports 45, 117110 (2026). https://doi.org/10.1016/j.celrep.2026.117110",
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}