nearly no peaks found by summit

[koriege]

Hi,

I don't know why, but compared to GoPeaks, using the same parameter set for summit, it reports only 17 peaks. Whereas GoPeaks reported 117661. Do you ever experienced such a huge discrepancy?

gopeaks -c <ctr.bam> -b <treat.bam> -w 150 -m 400 -p 0.01 -t 100 -l 25

summit.py -c <ctr.bam> -b <treat.bam> -w 150 -m 400 -p 0.05 -t 100 -l 25