main.yml

name: CI

# We can specify which Github events will trigger a CI build
on: push

# now define a single job 'build' (but could define more)
jobs:

  build:

    # Here we add the matrices' definition:
    strategy:
      fail-fast: false
      matrix:
        os: ["ubuntu-latest", "macos-latest", "windows-latest"]
        python-version: ["3.10", "3.11"]

    # Here we add the reference to the os matrix values
    runs-on: ${{ matrix.os }}

    # a job is a seq of steps
    steps:

    # Next we need to checkout out repository, and set up Python
    # A 'name' is just an optional label shown in the log - helpful to clarify progress - and can be anything
    - name: Checkout repository
      uses: actions/checkout@v4

    - name: Set up Python
      uses: actions/setup-python@v4
      with:
        # Here we add the reference to the python-version matrix values
        python-version: ${{ matrix.python-version }}

    - name: Install Python dependencies
      run: |
        python3 -m pip install --upgrade pip
        python3 -m pip install -r requirements.txt

    - name: Test with PyTest
      run: |
        python3 -m pytest --cov=inflammation.models tests/test_models.py

    - name: Check style with Pylint
      run: |
        python3 -m pylint --reports=y inflammation