evSeq discards reads with insertions and deletions, and a read longer than the refseq has (relative to the refseq) a very large insertion. These reads are thus all thrown away. Conditional should be added to only use a portion of the read up to the refseq size.
evSeq discards reads with insertions and deletions, and a read longer than the refseq has (relative to the refseq) a very large insertion. These reads are thus all thrown away. Conditional should be added to only use a portion of the read up to the refseq size.