From 51319349cdc31ef51613af4991199307b8c61718 Mon Sep 17 00:00:00 2001 From: Sonny Piers Date: Wed, 21 May 2025 09:52:54 +0200 Subject: [PATCH 1/3] Fix device backend service references --- .../community/contribute/tips-and-tricks.md | 18 +- .../software/subsystems/installation.md | 14 +- .../reference/software/subsystems/startup.md | 6 +- .../node-red-dashboard/adafruithat/flows.json | 16878 +++++++--------- .../planktoscopehat/flows.json | 16199 +++++++-------- 5 files changed, 15287 insertions(+), 17828 deletions(-) diff --git a/documentation/docs/community/contribute/tips-and-tricks.md b/documentation/docs/community/contribute/tips-and-tricks.md index 75f4d84a4..c9a8a5c5e 100644 --- a/documentation/docs/community/contribute/tips-and-tricks.md +++ b/documentation/docs/community/contribute/tips-and-tricks.md @@ -1,6 +1,5 @@ # Tips and tricks - This page provides useful snippets and how-tos while developing software for the PlanktoScope. !!! warning @@ -56,6 +55,7 @@ cd ~/PlanktoScope git config --global user.email "you@example.com" git config --global user.name "Your Name" ``` +
@@ -96,7 +96,7 @@ Use `$planktoscope` as the host to connect to and open the "PlanktoScope" direct If you make changes to the backend, you can restart the backend and test your changes with ```sh -sudo systemctl restart planktoscope-org.device-backend.controller-planktoscopehat.service +sudo systemctl restart planktoscope-org.device-backend.controller.service ``` ## Connect to router @@ -116,6 +116,7 @@ nmcli connection up eth0-default # Ethernet nmcli connection down eth0-default ``` +
Your PlanktoScope should be accessible via its hostname which you can retrieve from the PlanktoScope with `hostnamectl` @@ -134,7 +135,6 @@ You will need to plug the SD card into your computer. `/dev/device` refers to the path of the SD card device/disk. You will need to adjust it. Use `diskutil list` on macOS and `fdisk --list` on Linux. - ```sh # backup whole SD card onto an image file on your computer sudo dd bs=1M if=/dev/device status=progress conv=fdatasync | xz > sdcard.img.xz @@ -151,8 +151,8 @@ See also the operating guide [SD Card Cloning](../../operation/clone-sd.md). This is a quick setup guide. See also -* [documentation README](https://github.com/PlanktoScope/PlanktoScope/blob/master/documentation/README.md) -* [Writing Documentation](./documentation.md) +- [documentation README](https://github.com/PlanktoScope/PlanktoScope/blob/master/documentation/README.md) +- [Writing Documentation](./documentation.md) Install dependencies: @@ -162,10 +162,12 @@ Install dependencies: Start by [installing WSL (Ubuntu)](https://learn.microsoft.com/en-us/windows/wsl/install#install-wsl-command) Because of a small incompatibilty between Windows and Linux; we recommend cloning the repo "in WSL" but if you prefer keeping your git clone "in Windows", here are other options: -* [Git line endings](https://learn.microsoft.com/en-us/windows/wsl/tutorials/wsl-git#git-line-endings) -* [Visual Studio Code WSL extension](https://code.visualstudio.com/docs/remote/wsl) + +- [Git line endings](https://learn.microsoft.com/en-us/windows/wsl/tutorials/wsl-git#git-line-endings) +- [Visual Studio Code WSL extension](https://code.visualstudio.com/docs/remote/wsl) Then follow the Ubuntu instructions below. +
@@ -177,6 +179,7 @@ sudo apt install python3-poetry cd documentation poetry install --no-root ``` +
@@ -187,6 +190,7 @@ sudo dnf install python3-poetry cd documentation poetry install --no-root ``` +
Run live previewer: diff --git a/documentation/docs/reference/software/subsystems/installation.md b/documentation/docs/reference/software/subsystems/installation.md index 7daeff18a..45217b334 100644 --- a/documentation/docs/reference/software/subsystems/installation.md +++ b/documentation/docs/reference/software/subsystems/installation.md @@ -2,21 +2,21 @@ This document explains how the [PlanktoScope OS](../architecture/os.md)'s installation process works, as a companion to our [non-standard installation guide](../../../setup/software/nonstandard-install.md) which carries out the process explained below. -The installation process is initiated by booting into an [appropriate](../../../setup/software/nonstandard-install.md#download-a-raspberry-pi-os-sd-card-image) installation of the Raspberry Pi OS and then downloading and [running the *installation bootstrap script*](../../../setup/software/nonstandard-install.md#run-the-installation-script), which in turn downloads and runs the appropriate *distro setup scripts* according to the installation parameters provided to the installation bootstrap script. +The installation process is initiated by booting into an [appropriate](../../../setup/software/nonstandard-install.md#download-a-raspberry-pi-os-sd-card-image) installation of the Raspberry Pi OS and then downloading and [running the _installation bootstrap script_](../../../setup/software/nonstandard-install.md#run-the-installation-script), which in turn downloads and runs the appropriate _distro setup scripts_ according to the installation parameters provided to the installation bootstrap script. ## Installation bootstrap script -The [installation bootstrap script](https://github.com/PlanktoScope/install.planktoscope.community/blob/edge/distro.sh) is provided so that a one-line command can be executed to automatically perform the entire process of installing the PlanktoScope OS on top of the Raspberry Pi OS. [The GitHub repository which contains that script](https://github.com/PlanktoScope/install.planktoscope.community) always publishes the latest version on its `stable` branch to [install.planktoscope.community/distro.sh](https://install.planktoscope.community/distro.sh) via GitHub Pages; other versions can be downloaded from GitHub via the corresponding permalinks for those versions of the file (e.g. for the version from the v2023.9.0 tag in the repository). The installation bootstrap script performs the following steps: +The [installation bootstrap script](https://github.com/PlanktoScope/install.planktoscope.community/blob/edge/distro.sh) is provided so that a one-line command can be executed to automatically perform the entire process of installing the PlanktoScope OS on top of the Raspberry Pi OS. [The GitHub repository which contains that script](https://github.com/PlanktoScope/install.planktoscope.community) always publishes the latest version on its `stable` branch to [install.planktoscope.community/distro.sh](https://install.planktoscope.community/distro.sh) via GitHub Pages; other versions can be downloaded from GitHub via the corresponding permalinks for those versions of the file (e.g. for the version from the v2023.9.0 tag in the repository). The installation bootstrap script performs the following steps: 1. The script loads some [parameters](#script-parameters) (set by environment variables and/or corresponding command-line arguments) which set the behavior of the script. 2. The script installs `git`, if it was not already installed (as is the case on the "Lite" image of the Raspberry Pi OS); if the `yes` parameter was not set and `git` was not already installed, the script will first ask the user to confirm that they wish to install `git` before the script continues. `git` is required to resolve version query parameters provided to the script, so that the script can determine how to download the requested version of the PlanktoScope OS's distro setup scripts. 3. The script clones a minimal ["mirror"](https://git-scm.com/docs/git-clone#Documentation/git-clone.txt---mirror) copy of the specified repository (set by the `repo` parameter) of distro setup scripts to a temporary directory (i.e. a directory created in `/tmp`). This "mirror" copy is used to: - - - Resolve the version query parameters (`version-query`, `query-type`, and - when `query-type` is `tag` - `tag-prefix`) into a specific commit hash for the repository. - - - Determine a [*(pseudo-)version*](https://git-scm.com/docs/git-describe#_examples) string for the resolved commit based on the last release tag (whose name is prefixed with the `tag-prefix` parameter) ancestral to that commit. + + - Resolve the version query parameters (`version-query`, `query-type`, and - when `query-type` is `tag` - `tag-prefix`) into a specific commit hash for the repository. + + - Determine a [_(pseudo-)version_](https://git-scm.com/docs/git-describe#_examples) string for the resolved commit based on the last release tag (whose name is prefixed with the `tag-prefix` parameter) ancestral to that commit. 4. The script clones a copy of the specified repository (set by the `repo` parameter) to a temporary directory and checks out the specific commit which was resolved by the previous step; if the `yes` parameter was not set, the script will first ask the user to confirm that they wish to download the resolved commit of the distro setup scripts before the script continues. Because the repository containing the distro setup scripts may have many large files (e.g. image files for documentation) which are unrelated to the distro setup scripts, this step only downloads files in the specific commit needed for the distro setup scripts. @@ -108,7 +108,7 @@ This phase performs steps which might (in theory) be useful for other projects w This phase performs steps specific to the PlanktoScope's hardware: -- Setup of the PlanktoScope hardware controller: various Python tools (`pip`, `venv`, and `poetry`) are installed using APT, a hard-coded version of a hard-coded Git repository (namely [github.com/PlanktoScope/device-backend](https://github.com/PlanktoScope/device-backend)) is cloned, and various dependencies (both system libraries and Python packages) of the hardware controller are installed. The `planktoscope-org.device-backend.controller-adafruithat.service` and `planktoscope-org.device-backend.controller-planktoscopehat.service` systemd services are created, and the appropriate one is enabled depending on which HAT the PlanktoScope OS is being installed for. The appropriate hardware configuration file will also be copied into the location expected by the hardware controller. (Note: once the PlanktoScope hardware controller is containerized and managed in Forklift, this step will be eliminated.) +- Setup of the PlanktoScope hardware controller: various Python tools (`pip`, `venv`, and `poetry`) are installed using APT, a hard-coded version of a hard-coded Git repository (namely [github.com/PlanktoScope/device-backend](https://github.com/PlanktoScope/device-backend)) is cloned, and various dependencies (both system libraries and Python packages) of the hardware controller are installed. The appropriate hardware configuration file will also be copied into the location expected by the hardware controller. (Note: once the PlanktoScope hardware controller is containerized and managed in Forklift, this step will be eliminated.) - Setup of GPIO stepper initialization at boot: a systemd service is created to release the stepper motors at startup. (Note: this service currently doesn't work and will eventually be fixed, deleted, or replaced.) diff --git a/documentation/docs/reference/software/subsystems/startup.md b/documentation/docs/reference/software/subsystems/startup.md index 412b7eff2..71686060e 100644 --- a/documentation/docs/reference/software/subsystems/startup.md +++ b/documentation/docs/reference/software/subsystems/startup.md @@ -22,7 +22,7 @@ The PlanktoScope OS's setup scripts provide some system services which are not m - `overlay-usr.service` runs after `overlay-sysroot.service` and before `overlay-fs.target`. -- `overlay-etc.service` runs after `overlay-sysroot.service` and `systemd-machine-id-commit.service` , and before `systemd-sysctl.service` and `overlay-fs.target`. +- `overlay-etc.service` runs after `overlay-sysroot.service` and `systemd-machine-id-commit.service` , and before `systemd-sysctl.service` and `overlay-fs.target`. - `start-overlaid-units.service` runs after `overlay-fs.target` and `basic.target`. @@ -54,7 +54,7 @@ For descriptions of the various targets (e.g. `sysinit.target`, `network-pre.tar ### User interface -- `assemble-cockpit-config.service`, `assemble-cockpit-origins.service`, and `assemble-cockpit-origins-templated.service` update Cockpit's configuration file from drop-in config file fragments in `/etc/cockpit/cockpit.conf.d`, `/etc/cockpit/origins.d`, and `/etc/cockpit/origins-templates.d`, respectively. They run after `generate-machine-name.service` and `generate-hostname-templated.service` and before `cockpit.service`. +- `assemble-cockpit-config.service`, `assemble-cockpit-origins.service`, and `assemble-cockpit-origins-templated.service` update Cockpit's configuration file from drop-in config file fragments in `/etc/cockpit/cockpit.conf.d`, `/etc/cockpit/origins.d`, and `/etc/cockpit/origins-templates.d`, respectively. They run after `generate-machine-name.service` and `generate-hostname-templated.service` and before `cockpit.service`. - `ensure-ssh-host-keys.service` regenerates the SSH server's host keys if the keys are missing, and runs before `ssh.service`. @@ -62,4 +62,4 @@ For descriptions of the various targets (e.g. `sysinit.target`, `network-pre.tar ### PlanktoScope-specific hardware abstraction -- The PlanktoScope hardware controller (managed by `planktoscope-org.device-backend.controller-{adafruithat or planktoscopehat}.service`) starts after `forklift-apply.service` (which manages Mosquitto) and `nodered.service` have started, to ensure that the PlanktoScope hardware controller broadcasts the detected camera model name only after the PlanktoScope Node-RED dashboard is ready to receive that broadcast. (In the future the PlanktoScope hardware controller will instead be run as a Docker container and will be managed by `forklift`.) +- The PlanktoScope hardware controller (managed by `planktoscope-org.device-backend.controller.service`) starts after `forklift-apply.service` (which manages Mosquitto) and `nodered.service` have started, to ensure that the PlanktoScope hardware controller broadcasts the detected camera model name only after the PlanktoScope Node-RED dashboard is ready to receive that broadcast. (In the future the PlanktoScope hardware controller will instead be run as a Docker container and will be managed by `forklift`.) diff --git a/software/node-red-dashboard/adafruithat/flows.json b/software/node-red-dashboard/adafruithat/flows.json index 8e03caceb..f7ea326ce 100644 --- a/software/node-red-dashboard/adafruithat/flows.json +++ b/software/node-red-dashboard/adafruithat/flows.json @@ -1,9099 +1,7811 @@ [ - { - "id": "eaae323a.31b3", - "type": "tab", - "label": "Home", - "disabled": false, - "info": "" - }, - { - "id": "b771c342.49603", - "type": "tab", - "label": "Sample", - "disabled": false, - "info": "" - }, - { - "id": "bccd1f23.87219", - "type": "tab", - "label": "Optic Configuration", - "disabled": false, - "info": "" - }, - { - "id": "baa1e3d9.cb29d", - "type": "tab", - "label": "Fluidic Acquisition", - "disabled": false, - "info": "" - }, - { - "id": "cb95299c.2817c8", - "type": "tab", - "label": "Segmentation", - "disabled": false, - "info": "" - }, - { - "id": "c1660bc.e7ff7f8", - 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"willMsg": {}, - "userProps": "", - "sessionExpiry": "" - }, - { - "id": "abeb6dad.635a2", - "type": "ui_group", - "name": "Control", - "tab": "8d16beb8.9b3fb", - "order": 1, - "disp": true, - "width": 10, - "collapse": false - }, - { - "id": "cf5d9f0e.d57e7", - "type": "ui_group", - "name": "Net Metadata", - "tab": "737ec584.2eea2c", - "order": 4, - "disp": false, - "width": "10", - "collapse": false - }, - { - "id": "ce9e278.781eed8", - "type": "ui_group", - "name": "Information", - "tab": "d9cd733b.ab73d", - "order": 5, - "disp": true, - "width": 6, - "collapse": false - }, - { - "id": "70de8209.68416c", - "type": "ui_group", - "name": "Status", - "tab": "c9194f02.9d5e9", - "order": 5, - "disp": true, - "width": 10, - "collapse": false - }, - { - "id": "46be9c86.dea684", - "type": "ui_group", - "name": "Status", - "tab": "8d16beb8.9b3fb", - "order": 2, - "disp": true, - "width": 10, - "collapse": false - }, - { - "id": "8c38a81e.9897a8", - "type": "ui_group", - "name": "Camera Settings", - "tab": "181bb236.1e94be", - "order": 3, - "disp": true, - "width": 6, - "collapse": false - }, - { - "id": "2489e51c.eed77a", - "type": "ui_tab", - "name": "Administration", - "icon": "dashboard", - "order": 9, - "disabled": false, - "hidden": false - }, - { - "id": "b0fb559a.6966a8", - "type": "ui_tab", - "name": "Hardware Settings", - "icon": "fa-cogs", - "disabled": false, - "hidden": false - }, - { - "id": "6be36295.0ab324", - "type": "ui_group", - "name": "Settings", - "tab": "b0fb559a.6966a8", - "order": 1, - "disp": false, - "width": "8", - "collapse": false, - "className": "" - }, - { - "id": "fc5e4e6f.5b1c8", - "type": "ui_group", - "name": "GPS Status", - "tab": "737ec584.2eea2c", - "order": 6, - "disp": true, - "width": 10, - "collapse": false - }, - { - "id": "f3ca28ef.4df0a8", - "type": "ui_group", - "name": "Shutdown", - "tab": "3a6bb13f.c9703e", - "order": 7, - "disp": true, - "width": 4, - "collapse": false - }, - { - "id": "3dfd8a69.69ed56", - "type": "ui_spacer", - "name": "spacer", - "group": "3e1ba03d.f01d8", - "order": 5, - "width": 10, - "height": 1 - }, - { - "id": "72a9216.2ff48e", - "type": "ui_spacer", - "name": "spacer", - "group": "4322c187.e73e5", - "order": 8, - "width": 10, - "height": 1 - }, - { - "id": "1b664927.c91d1f", - "type": "ui_spacer", - "name": "spacer", - "group": "b5d61bc7.54fe48", - "order": 2, - "width": 2, - "height": 1 - }, - { - "id": "1a663b6a.ab5805", - "type": "ui_spacer", - "name": "spacer", - "group": "b5d61bc7.54fe48", - "order": 4, - "width": 2, - "height": 1 - }, - { - "id": "8eeed8d8.ad9098", - "type": "ui_spacer", - "name": "spacer", - "group": "b5d61bc7.54fe48", - "order": 5, - "width": 2, - "height": 1 - }, - { - "id": "be1c5ce7.004e", - "type": "ui_spacer", - "name": "spacer", - "group": "b5d61bc7.54fe48", - "order": 6, - "width": 2, - "height": 1 - }, - { - "id": "c2fe38e9.555e3", - "type": "ui_spacer", - "name": "spacer", - "group": "b5d61bc7.54fe48", - "order": 7, - "width": 2, - "height": 1 - }, - { - "id": "89bd18b7.c779a8", - "type": "ui_spacer", - "name": "spacer", - "group": "b5d61bc7.54fe48", - "order": 8, - "width": 2, - "height": 1 - }, - { - "id": "3cbbfa5d.efa636", - "type": "ui_spacer", - "name": "spacer", - "group": "b7919ae2.c01788", - "order": 2, - "width": 5, - "height": 1 - }, - { - "id": "97148e8d8e298f1a", - "type": "ui_spacer", - "z": "cb95299c.2817c8", - "name": "spacer", - "group": "abeb6dad.635a2", - "order": 7, - "width": 10, - "height": 1 - }, - { - "id": "3b2eccc574e6a9ae", - "type": "ui_spacer", - "z": "cb95299c.2817c8", - "name": "spacer", - "group": "abeb6dad.635a2", - "order": 11, - "width": 1, - "height": 1 - }, - { - "id": "bbd6431d97c86f97", - "type": "ui_spacer", - "z": "cb95299c.2817c8", - "name": "spacer", - "group": "46be9c86.dea684", - "order": 4, - "width": 3, - "height": 1 - }, - { - "id": "5f98f5f140f0ecde", - "type": "ui_spacer", - "z": "cb95299c.2817c8", - "name": "spacer", - "group": "46be9c86.dea684", - "order": 6, - "width": 3, - "height": 1 - }, - { - "id": "7bc0a4c416e4545c", - "type": "ui_group", - "name": "Culture Date and Time", - "tab": "737ec584.2eea2c", - "order": 2, - "disp": true, - "width": "10", - "collapse": false, - "className": "" - }, - { - "id": "6c31ad948a9d62fd", - "type": "ui_spacer", - "name": "spacer", - "group": "4248342d.e55fac", - "order": 2, - "width": 1, - "height": 1 - }, - { - "id": "833bc5bb.217ba8", - "type": "ui_group", - "name": "Preview", - "tab": "181bb236.1e94be", - "order": 1, - "disp": true, - "width": 18, - "collapse": false - }, - { - "id": "a7d64879.38298", - "type": "ui_group", - "name": "Logs", - "tab": "2489e51c.eed77a", - "order": 1, - "disp": true, - "width": "12", - "collapse": true, - "className": "" - }, - { - "id": "6465bdd5.15eb8c", - "type": "file in", - "z": "1c24ad9c.bebec2", - "name": "", - "filename": "/home/pi/PlanktoScope/config.json", - "filenameType": "str", - "format": "utf8", - "chunk": false, - "sendError": false, - "encoding": "none", - "x": 560, - "y": 60, - "wires": [ - [ - "15ceb135.6628bf" - ] - ], - "info": "# PlanktoScope Help\nThis Node will read the content of the file named **config.txt** containing all the input placeholders.\n" - }, - { - "id": "15ceb135.6628bf", - "type": "json", - "z": "1c24ad9c.bebec2", - "name": "config.json", - "property": "payload", - "action": "", - "pretty": false, - "x": 730, - "y": 60, - "wires": [ - [ - "ad541674.4791c8" - ] - ] - }, - { - "id": "7205d267.36adcc", - "type": "file", - "z": "1c24ad9c.bebec2", - "name": "", - "filename": "/home/pi/PlanktoScope/config.json", - "appendNewline": true, - "createDir": true, - "overwriteFile": "true", - "encoding": "none", - "x": 990, - "y": 160, - "wires": [ - [] - ] - }, - { - "id": "2e6ddf51.c0dba", - "type": "json", - "z": "1c24ad9c.bebec2", - "name": "config.json", - "property": "payload", - "action": "str", - "pretty": true, - "x": 730, - "y": 160, - "wires": [ - [ - "7205d267.36adcc" - ] - ] - }, - { - "id": "ad541674.4791c8", - "type": "function", - "z": "1c24ad9c.bebec2", - "name": "Global Set", - "func": "global.set(\"config_keys\", Object.keys(msg.payload));\n\nfor (const key in msg.payload) {\n global.set(key, msg.payload[key]);\n}\n\nreturn msg;", - "outputs": 1, - "noerr": 0, - "initialize": "", - "finalize": "", - "x": 910, - "y": 60, - "wires": [ - [] - ] - }, - { - "id": "3e9a33c.141384c", - "type": "inject", - "z": "1c24ad9c.bebec2", - "name": "Load config", - "props": [ - { - "p": "topic", - "vt": "str" - } - ], - "repeat": "", - "crontab": "", - "once": true, - "onceDelay": 0.1, - "topic": "", - "payloadType": "str", - "x": 230, - "y": 60, - "wires": [ - [ - "6465bdd5.15eb8c" - ] - ] - }, - { - "id": "3ad9835.08c937c", - "type": "function", - "z": "1c24ad9c.bebec2", - "name": "get config payload", - "func": "keys = global.get(\"config_keys\")\n\nvar payload = {}\n\nkeys.forEach(function(item, index, array) {\n payload[item] = global.get(item);\n})\n\nreturn {\"payload\": payload};", - "outputs": 1, - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 410, - "y": 160, - "wires": [ - [ - "2e6ddf51.c0dba" - ] - ] - }, - { - "id": "f439663c.8abd3", - "type": "ui_ui_control", - "z": "1c24ad9c.bebec2", - "name": "Connect Event", - "events": "connect", - "x": 220, - "y": 100, - "wires": [ - [ - "6465bdd5.15eb8c" - ] - ] - }, - { - "id": "82099021.9ceb08", - "type": "file", - "z": "4ed26b8b.253504", - "name": "", - "filename": "/home/pi/PlanktoScope/hardware.json", - "appendNewline": true, - "createDir": true, - "overwriteFile": "true", - "encoding": "none", - "x": 660, - "y": 40, - "wires": [ - [] - ] - }, - { - "id": "bb0a8725.a1849", - "type": "json", - "z": "4ed26b8b.253504", - "name": "Create JSON", - "property": "payload", - "action": "str", - "pretty": true, - "x": 490, - "y": 40, - "wires": [ - [ - "82099021.9ceb08" - ] - ] - }, - { - "id": "53d163be.47cf24", - "type": "function", - "z": "4ed26b8b.253504", - "name": "Update and retrieve hardware_conf", - "func": "// change global\nhardware_conf = global.get(\"hardware_conf\");\n\nif (msg.topic == \"process_pixel_fixed\" && msg.payload == 0){\n delete hardware_conf[msg.topic]\n delete msg.topic\n}\n\nif (msg.topic !== null && msg.topic !== undefined){\n hardware_conf[msg.topic] = msg.payload;\n global.set(\"hardware_conf\", hardware_conf);\n}\n\nreturn {\"payload\": hardware_conf};", - "outputs": 1, - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 240, - "y": 40, - "wires": [ - [ - "bb0a8725.a1849" - ] - ] - }, - { - "id": "48ceeda454438cb7", - "type": "file in", - "z": "e6665421f66ea4c8", - "name": "", - "filename": "/home/pi/PlanktoScope/hardware.json", - "filenameType": "str", - "format": "utf8", - "chunk": false, - "sendError": false, - "encoding": "none", - "x": 250, - "y": 40, - "wires": [ - [ - "853c938a270fd85e" - ] - ], - "info": "# PlanktoScope Help\nThis Node will read the content of the file named **config.txt** containing all the input placeholders.\n" - }, - { - "id": "853c938a270fd85e", - "type": "json", - "z": "e6665421f66ea4c8", - "name": "Parse JSON", - "property": "payload", - "action": "", - "pretty": false, - "x": 510, - "y": 40, - "wires": [ - [ - "2b1a67ac127f3fe7" - ] - ] - }, - { - "id": "2b1a67ac127f3fe7", - "type": "change", - "z": "e6665421f66ea4c8", - "name": "", - "rules": [ - { - "t": "set", - "p": "hardware_conf", - "pt": "global", - "to": "payload", - "tot": "msg" - } - ], - "action": "", - "property": "", - "from": "", - "to": "", - "reg": false, - "x": 730, - "y": 40, - "wires": [ - [] - ] - }, - { - "id": "2f30a6ee99587899", - "type": "comment", - "z": "eaae323a.31b3", - "name": "LICENSE", - "info": "Copyright 2022 Thibaut Pollina and Romain Bazile\nLicensed under GPL v3.0", - "x": 140, - "y": 600, - "wires": [] - }, - { - "id": "4e78af2d.90be7", - "type": "ui_ui_control", - "z": "eaae323a.31b3", - "name": "", - "events": "change", - "x": 440, - "y": 160, - "wires": [ - [] - ] - }, - { - "id": "7789839d.69b48c", - "type": "ui_template", - "z": "eaae323a.31b3", - "group": "4e0cd5ea.17e59c", - "name": "Optic Configuration", - "order": 1, - "width": 4, - "height": 4, - "format": "\n \n
Optic Configuration
\n", - "storeOutMessages": true, - "fwdInMessages": true, - "resendOnRefresh": false, - "templateScope": "local", - "x": 130, - "y": 100, - "wires": [ - [ - "4e78af2d.90be7" - ] - ] - }, - { - "id": "6ea6c306.f9c12c", - "type": "ui_template", - "z": "eaae323a.31b3", - "group": "ef590206.24f6", - "name": "Fluidic Acquisition", - "order": 1, - "width": 4, - "height": 4, - "format": "\n \n
Fluidic Acquisition
\n", - "storeOutMessages": true, - "fwdInMessages": true, - "resendOnRefresh": false, - "templateScope": "local", - "x": 130, - "y": 140, - "wires": [ - [ - "4e78af2d.90be7" - ] - ] - }, - { - "id": "bb9eb153.9e36c", - "type": "ui_template", - "z": "eaae323a.31b3", - "group": "ae8f6620.073358", - "name": "Segmentation", - "order": 1, - "width": 4, - "height": 4, - "format": "\n \n
Segmentation
\n", - "storeOutMessages": true, - "fwdInMessages": true, - "resendOnRefresh": false, - "templateScope": "local", - "x": 140, - "y": 180, - "wires": [ - [ - "4e78af2d.90be7" - ] - ] - }, - { - "id": "eaf8ee7f.96f44", - "type": "ui_template", - "z": "eaae323a.31b3", - "group": "196518b2.4d53b7", - "name": "Gallery", - "order": 1, - "width": 4, - "height": 4, - "format": "\n \n
Gallery
\n", - "storeOutMessages": true, - "fwdInMessages": true, - "resendOnRefresh": false, - "templateScope": "local", - "x": 160, - "y": 220, - "wires": [ - [ - "4e78af2d.90be7" - ] - ] - }, - { - "id": "c1b1469.9650eb8", - "type": "ui_template", - "z": "eaae323a.31b3", - "group": "777a7c33.fcd804", - "name": "System Monitoring", - "order": 1, - "width": 4, - "height": 4, - "format": "\n \n
System Monitoring
\n", - "storeOutMessages": true, - "fwdInMessages": true, - "resendOnRefresh": false, - "templateScope": "local", - "x": 130, - "y": 260, - "wires": [ - [ - "4e78af2d.90be7" - ] - ] - }, - { - "id": "abafd6e6.04a5f8", - "type": "ui_template", - "z": "eaae323a.31b3", - "group": "6f97e7ae.270c48", - "name": "Sample", - "order": 1, - "width": 4, - "height": 4, - "format": "\n \n
Sample
\n
\n In doubt? Start Here!\n", - "storeOutMessages": true, - "fwdInMessages": true, - "resendOnRefresh": false, - "templateScope": "local", - "x": 160, - "y": 60, - "wires": [ - [ - "4e78af2d.90be7" - ] - ] - }, - { - "id": "dab82064.26a8d", - "type": "ui_button", - "z": "eaae323a.31b3", - "name": "Unlock button", - "group": "f3ca28ef.4df0a8", - "order": 2, - "width": 0, - "height": 0, - "passthru": false, - "label": "Unlock button", - "tooltip": "", - "color": "", - "bgcolor": "", - "icon": "", - "payload": "shutdown", - "payloadType": "flow", - "topic": "", - "x": 120, - "y": 380, - "wires": [ - [ - "6c3a3b4.78cad44" - ] - ] - }, - { - "id": "1c658761.b852a1", - "type": "ui_toast", - "z": "eaae323a.31b3", - "position": "dialog", - "displayTime": "3", - "highlight": "", - "sendall": true, - "outputs": 1, - "ok": "YES PLEASE", - "cancel": "NO!", - "raw": false, - "topic": "Are you sure?", - "name": "Confirmation message", - "x": 800, - "y": 380, - "wires": [ - [ - "8f1b8e23.daafe" - ] - ] - }, - { - "id": "a48ff63f.db5e18", - "type": "inject", - "z": "eaae323a.31b3", - "name": "disabled", - "props": [ - { - "p": "enabled", - "v": "false", - "vt": "bool" - } - ], - "repeat": "", - "crontab": "", - "once": true, - "onceDelay": 0.1, - "topic": "", - "x": 140, - "y": 420, - "wires": [ - [ - "d58039a9.6e7928" - ] - ] - }, - { - "id": "b67a7147.65fcd8", - "type": "ui_button", - "z": "eaae323a.31b3", - "name": "Shutdown button", - "group": "f3ca28ef.4df0a8", - "order": 4, - "width": 0, - "height": 0, - "passthru": false, - "label": "Shutdown", - "tooltip": "", - "color": "", - "bgcolor": "#AD1625", - "icon": "fa-power-off fa-2x", - "payload": "Do you want to turn the machine off now?", - "payloadType": "str", - "topic": "", - "x": 550, - "y": 380, - "wires": [ - [ - "1c658761.b852a1" - ] - ] - }, - { - "id": "d58039a9.6e7928", - "type": "change", - "z": "eaae323a.31b3", - "name": "", - "rules": [ - { - "t": "set", - "p": "shutdown", - "pt": "flow", - "to": "false", - "tot": "bool" - }, - { - "t": "set", - "p": "enabled", - "pt": "msg", - "to": "shutdown", - "tot": "flow" - } - ], - "action": "", - "property": "", - "from": "", - "to": "", - "reg": false, - "x": 320, - "y": 420, - "wires": [ - [ - "b67a7147.65fcd8" - ] - ] - }, - { - "id": "6c3a3b4.78cad44", - "type": "function", - "z": "eaae323a.31b3", - "name": "Toggle", - "func": "flow.set(\"shutdown\", !flow.get(\"shutdown\"))\nmsg.enabled = flow.get(\"shutdown\")\nreturn msg;", - "outputs": 1, - "noerr": 0, - "initialize": "", - "finalize": "", - "x": 290, - "y": 380, - "wires": [ - [ - "b67a7147.65fcd8" - ] - ] - }, - { - "id": "d1153ad6.40d738", - "type": "ui_template", - "z": "eaae323a.31b3", - "group": "f3ca28ef.4df0a8", - "name": "Shutdown information", - "order": 1, - "width": 0, - "height": 0, - "format": "
To prevent data corruption, please always shutdown the machine before unplugging the unit.\n

\nRemember to first unlock the shutdown button.\n
", - "storeOutMessages": true, - "fwdInMessages": false, - "resendOnRefresh": true, - "templateScope": "local", - "x": 120, - "y": 320, - "wires": [ - [] - ] - }, - { - "id": "e08cfcb8.2a67e8", - "type": "link out", - "z": "eaae323a.31b3", - "name": "Home shutdown button", - "links": [ - "b81b990a.d4dca" - ], - "x": 715, - "y": 500, - "wires": [] - }, - { - "id": "ce7087fc.dcc9e8", - "type": "ui_toast", - "z": "eaae323a.31b3", - "position": "dialog", - "displayTime": "10", - "highlight": "", - "sendall": true, - "outputs": 1, - "ok": "OK", - "cancel": "", - "raw": false, - "topic": "Turning off now!", - "name": "Shutdown message", - "x": 570, - "y": 540, - "wires": [ - [] - ] - }, - { - "id": "7d1626a0.deb85", - "type": "change", - "z": "eaae323a.31b3", - "name": "shutdown!", - "rules": [ - { - "t": "set", - "p": "payload", - "pt": "msg", - "to": "shutdown", - "tot": "str" - } - ], - "action": "", - "property": "", - "from": "", - "to": "", - "reg": false, - "x": 300, - "y": 500, - "wires": [ - [ - "e08cfcb8.2a67e8" - ] - ] - }, - { - "id": "8f1b8e23.daafe", - "type": "switch", - "z": "eaae323a.31b3", - "name": "", - "property": "payload", - "propertyType": "msg", - "rules": [ - { - "t": "eq", - "v": "NO!", - "vt": "str" - }, - { - "t": "else" - } - ], - "checkall": "true", - "repair": false, - "outputs": 2, - "x": 150, - "y": 500, - "wires": [ - [ - "d58039a9.6e7928" - ], - [ - "7d1626a0.deb85", - "281a56c9.ec7902" - ] - ] - }, - { - "id": "281a56c9.ec7902", - "type": "change", - "z": "eaae323a.31b3", - "name": "Shutdown message", - "rules": [ - { - "t": "set", - "p": "payload", - "pt": "msg", - "to": "Please wait a minute before disconnecting the machine from its power supply!", - "tot": "str" - } - ], - "action": "", - "property": "", - "from": "", - "to": "", - "reg": false, - "x": 330, - "y": 540, - "wires": [ - [ - "ce7087fc.dcc9e8" - ] - ] - }, - { - "id": "4557d689.a4fa88", - "type": "ui_text_input", - "z": "b771c342.49603", - "name": "sample_ship", - "label": "Name of the ship", - "tooltip": "", - "group": "3e1ba03d.f01d8", - "order": 2, - "width": 0, - "height": 0, - "passthru": true, - "mode": "text", - "delay": "300", - "topic": "sample_ship", - "sendOnBlur": true, - "className": "", - "topicType": "str", - "x": 670, - "y": 80, - "wires": [ - [ - "9f501f49.45645" - ] - ] - }, - { - "id": "fcfc31ae.af3af", - "type": "ui_dropdown", - "z": "b771c342.49603", - "name": "sample_sampling_gear", - "label": "Sampling gear*", - "tooltip": "", - "place": "Choose from list", - "group": "3e1ba03d.f01d8", - "order": 6, - "width": 0, - "height": 0, - "passthru": true, - "multiple": false, - "options": [ - { - "label": "High Speed Net", - "value": "net_hsn", - "type": "str" - }, - { - "label": "Tara Decknet", - "value": "net_decknet", - "type": "str" - }, - { - "label": "Plankton net", - "value": "net", - "type": "str" - }, - { - "label": "Niskin bottle 12L", - "value": "niskin_12L", - "type": "str" - }, - { - "label": "Niskin bottle 24L", - "value": "niskin_24L", - "type": "str" - }, - { - "label": "Pass Hull", - "value": "pass_hull", - "type": "str" - }, - { - "label": "Single location (with net or bucket)", - "value": "single_location", - "type": "str" - }, - { - "label": "Lab culture", - "value": "culture", - "type": "str" - }, - { - "label": "Test", - "value": "test", - "type": "str" - } - ], - "payload": "", - "topic": "sample_sampling_gear", - "topicType": "str", - "className": "", - "x": 630, - "y": 200, - "wires": [ - [ - "9f501f49.45645", - "46eb1bf8.3dc5f4", - "3ac7b631f5d8ef90" - ] - ] - }, - { - "id": "82c5fc77.59c97", - "type": "ui_text_input", - "z": "b771c342.49603", - "name": "sample_operator", - "label": "Name of the operator*", - "tooltip": "", - "group": "3e1ba03d.f01d8", - "order": 3, - "width": 0, - "height": 0, - "passthru": true, - "mode": "text", - "delay": "300", - "topic": "sample_operator", - "sendOnBlur": true, - "className": "", - "topicType": "str", - "x": 650, - "y": 160, - "wires": [ - [ - "9f501f49.45645" - ] - ] - }, - { - "id": "9c882b37.fde668", - "type": "ui_text_input", - "z": "b771c342.49603", - "name": "sample_project", - "label": "Name of the project*", - "tooltip": "", - "group": "3e1ba03d.f01d8", - "order": 1, - "width": 0, - "height": 0, - "passthru": true, - "mode": "text", - "delay": "300", - "topic": "sample_project", - "sendOnBlur": true, - "className": "", - "topicType": "str", - "x": 660, - "y": 40, - "wires": [ - [ - "9f501f49.45645" - ] - ] - }, - { - "id": "94eb4221.9b92c", - "type": "ui_text_input", - "z": "b771c342.49603", - "name": "sample_id", - "label": "Station ID*", - "tooltip": "", - "group": "3e1ba03d.f01d8", - "order": 4, - "width": 0, - "height": 0, - "passthru": true, - "mode": "text", - "delay": "300", - "topic": "sample_id", - "sendOnBlur": true, - "className": "", - "topicType": "str", - "x": 670, - "y": 120, - "wires": [ - [ - "9f501f49.45645" - ] - ] - }, - { - "id": "9f501f49.45645", - "type": "function", - "z": "b771c342.49603", - "name": "set global", - "func": "global.set(msg.topic,msg.payload);", - "outputs": 1, - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 1080, - "y": 200, - "wires": [ - [] - ] - }, - { - "id": "222c851d.5d0a3a", - "type": "ui_ui_control", - "z": "b771c342.49603", - "name": "", - "events": "change", - "x": 400, - "y": 880, - "wires": [ - [] - ] - }, - { - "id": "52f6b103.1efb6", - "type": "ui_toast", - "z": "b771c342.49603", - "position": "dialog", - "displayTime": "3", - "highlight": "", - "sendall": true, - "outputs": 1, - "ok": "OK", - "cancel": "", - "raw": false, - "topic": "", - "name": "", - "x": 710, - "y": 980, - "wires": [ - [] - ] - }, - { - "id": "986d960a.c75908", - "type": "function", - "z": "b771c342.49603", - "name": "Check form", - "func": "var sample_project= global.get(\"sample_project\");\nvar sample_id= global.get(\"sample_id\");\nvar sample_operator= global.get(\"sample_operator\");\nvar sample_sampling_gear= global.get(\"sample_sampling_gear\");\nvar object_lat= global.get(\"object_lat\");\nvar object_lon= global.get(\"object_lon\");\nvar object_date= global.get(\"object_date\");\nvar object_time= global.get(\"object_time\");\nif (sample_project === undefined || sample_project === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Sample project\"\n return [null, msg];\n}\n\nelse if (sample_id === undefined || sample_id === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Sample ID\"\n return [null, msg];\n}\n\nelse if (sample_operator === undefined || sample_operator === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Sample operator\"\n return [null, msg];\n}\n\nelse if (sample_sampling_gear === undefined || sample_sampling_gear === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Sample sampling gear\"\n return [null, msg];\n}\n\nelse if (object_lat === undefined || object_lat === null) {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Latitude of sample\"\n return [null, msg];\n}\n\nelse if (object_lon === undefined || object_lon === null) {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Longitude of sample\"\n return [null, msg];\n}\n\nelse if (object_date === undefined || object_date === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Date of sample\"\n return [null, msg];\n}\n\nelse if (object_time === undefined || object_time === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Time of sample\"\n return [null, msg];\n}\nelse if (sample_sampling_gear.startsWith(\"net\")){\n var object_lat_end = global.get(\"object_lat_end\");\n var object_lon_end = global.get(\"object_lon_end\");\n var object_date_end = global.get(\"object_date_end\");\n var object_time_end = global.get(\"object_time_end\");\n var sample_gear_net_opening = global.get(\"sample_gear_net_opening\");\n\n if (object_lat_end === undefined || object_lat_end === null) {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Latitude of retrieval\"\n return [null, msg];\n }\n \n else if (object_lon_end === undefined || object_lon_end === null) {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Longitude of retrieval\"\n return [null, msg];\n }\n \n else if (object_date_end === undefined || object_date_end === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Date of retrieval\"\n return [null, msg];\n }\n \n else if (object_time_end === undefined || object_time_end === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Time of retrieval\"\n return [null, msg];\n }\n \n else if (sample_gear_net_opening === undefined || sample_gear_net_opening === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Net opening dimension\"\n return [null, msg];\n }\n \n if (sample_sampling_gear == \"net_decknet\"){\n var sample_total_volume = global.get(\"sample_total_volume\");\n if (sample_total_volume === undefined || sample_total_volume === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Decknet flowmeter readings\"\n return [null, msg];\n }\n }\n}\nmsg.topic = \"config_save\"\nmsg.payload={\"tab\":\"Optic Configuration\"};\n\nreturn [msg, null];", - "outputs": 2, - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 470, - "y": 940, - "wires": [ - [ - "726a7822.cd6298", - "e2b277c1.07283" - ], - [ - "52f6b103.1efb6" - ] - ], - "outputLabels": [ - "message", - "error" - ] - }, - { - "id": "18f44504.cac66b", - "type": "gpsd", - "z": "b771c342.49603", - "name": "", - "hostname": "localhost", - "port": "2947", - "tpv": true, - "sky": false, - "info": false, - "device": false, - "gst": false, - "att": false, - "x": 250, - "y": 1240, - "wires": [ - [ - "258b4562.9f778a", - "54e37580.fdc31c", - "cc21ca16.b92928", - "4a4de52c.cf2884", - "73c4a14a.9b93c8" - ] - ] - }, - { - "id": "726a7822.cd6298", - "type": "ui_ui_control", - "z": "b771c342.49603", - "name": "", - "events": "change", - "x": 700, - "y": 900, - "wires": [ - [] - ] - }, - { - "id": "16de754c.cc969b", - "type": "ui_button", - "z": "b771c342.49603", - "name": "", - "group": "5517c651.b2f668", - "order": 1, - "width": 5, - "height": 1, - "passthru": false, - "label": "Previous", - "tooltip": "", - "color": "#097479", - "bgcolor": "white", - "icon": "keyboard_return", - "payload": "{\"tab\":\"Home\"}", - "payloadType": "json", - "topic": "", - "x": 240, - "y": 880, - "wires": [ - [ - "222c851d.5d0a3a" - ] - ] - }, - { - "id": "84f3d040.5f7ea", - "type": "ui_button", - "z": "b771c342.49603", - "name": "", - "group": "5517c651.b2f668", - "order": 2, - "width": 5, - "height": 1, - "passthru": false, - "label": "Continue", - "tooltip": "", - "color": "#097479", - "bgcolor": "white", - "icon": "keyboard_tab", - "payload": "{\"tab\":\"Home\"}", - "payloadType": "json", - "topic": "", - "x": 240, - "y": 940, - "wires": [ - [ - "986d960a.c75908" - ] - ] - }, - { - "id": "d027a6bf.7049e8", - "type": "function", - "z": "b771c342.49603", - "name": "get sample_projet", - "func": "msg.payload = msg.payload.sample_project;\nreturn msg;", - "outputs": 1, - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 310, - "y": 40, - "wires": [ - [ - "9c882b37.fde668" - ] - ] - }, - { - "id": "5a811caf.0f3144", - "type": "function", - "z": "b771c342.49603", - "name": "get sample_ship", - "func": "msg.payload = msg.payload.sample_ship;\nreturn msg;", - "outputs": 1, - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 300, - "y": 80, - "wires": [ - [ - "4557d689.a4fa88" - ] - ] - }, - { - "id": "45911c98.2bd83c", - "type": "function", - "z": "b771c342.49603", - "name": "get sample_id", - "func": "msg.payload = msg.payload.sample_id;\nreturn msg;", - "outputs": 1, - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 300, - "y": 120, - "wires": [ - [ - "94eb4221.9b92c" - ] - ] - }, - { - "id": "1e09a4ab.72996b", - "type": "function", - "z": "b771c342.49603", - "name": "get sample_operator", - "func": "msg.payload = msg.payload.sample_operator;\nreturn msg;", - "outputs": 1, - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 320, - "y": 160, - "wires": [ - [ - "82c5fc77.59c97" - ] - ] - }, - { - "id": "a3272681.f271c8", - "type": "function", - "z": "b771c342.49603", - "name": "get sample_sampling_gear", - "func": "msg.topic = \"sample_sampling_gear\"\nif (msg.payload.sample_sampling_gear === undefined){\n msg.payload = \"net\";\n}\nelse\n{\n msg.payload = msg.payload.sample_sampling_gear;\n}\nreturn msg;", - "outputs": 1, - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 340, - "y": 200, - "wires": [ - [ - "fcfc31ae.af3af" - ] - ] - }, - { - "id": "a6907a38.f6611", - "type": "subflow:1c24ad9c.bebec2", - "z": "b771c342.49603", - "name": "", - "env": [], - "x": 70, - "y": 220, - "wires": [ - [ - "d027a6bf.7049e8", - "5a811caf.0f3144", - "45911c98.2bd83c", - "1e09a4ab.72996b", - "8dff1648.82e42", - "9f04c5ec.75f3d8", - "f408a273.4fb538", - "e73fd87d.d24e4", - "489c8e06.cc7d6", - "a3272681.f271c8" - ] - ] - }, - { - "id": "e2b277c1.07283", - "type": "subflow:1c24ad9c.bebec2", - "z": "b771c342.49603", - "name": "", - "env": [], - "x": 690, - "y": 940, - "wires": [ - [] - ] - }, - { - "id": "7116e906.9f50f", - "type": "ui_text", - "z": "b771c342.49603", - "group": "fc5e4e6f.5b1c8", - "order": 1, - "width": 10, - "height": 1, - "name": "GPS Status Display", - "label": "GPS Status:", - "format": "{{msg.payload}}", - "layout": "row-center", - "x": 730, - "y": 1080, - "wires": [] - }, - { - "id": "9c7f7fc9.c8d3a", - "type": "ui_text_input", - "z": "b771c342.49603", - "name": "object_depth_max", - "label": "Max sampling depth (m)", - "tooltip": "in m", - "group": "3e1ba03d.f01d8", - "order": 10, - "width": 5, - "height": 1, - "passthru": true, - "mode": "number", - "delay": "300", - "topic": "object_depth_max", - "sendOnBlur": true, - "className": "", - "topicType": "str", - "x": 650, - "y": 240, - "wires": [ - [ - "9f501f49.45645" - ] - ] - }, - { - "id": "317eeeb7.8d3042", - "type": "ui_text_input", - "z": "b771c342.49603", - "name": "object_depth_min", - "label": "Min sampling depth (m)", - "tooltip": "in m", - "group": "3e1ba03d.f01d8", - 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"group": "cf5d9f0e.d57e7", - "order": 3, - "width": 0, - "height": 0, - "options": [ - { - "label": "Latitude (36.574439°N or 36°57.4439'N)", - "value": "object_lat", - "type": "text", - "required": true, - "rows": null - }, - { - "label": "Longitude (110.42100°W or 110°4.2100'W)", - "value": "object_lon", - "type": "text", - "required": true, - "rows": null - }, - { - "label": "Date (YYYY-MM-DD UTC)", - "value": "object_date", - "type": "text", - "required": true, - "rows": null - }, - { - "label": "Time (HH:MM, UTC 24h)", - "value": "object_time", - "type": "text", - "required": true, - "rows": null - } - ], - "formValue": { - "object_lat": "", - "object_lon": "", - "object_date": "", - "object_time": "" - }, - "payload": "", - "submit": "Validate", - "cancel": "", - "topic": "net_throw_location", - "topicType": "str", - "splitLayout": false, - "className": "", - "x": 650, - "y": 620, - "wires": [ - [ - "14658615.47c862", - "cc67c97f55a340d3" - ] - ] - }, - { - "id": "56d40584.eff4e4", - "type": "ui_form", - "z": "b771c342.49603", - "name": "net_retrieval_location", - "label": "Net Retrieval Location", - "group": "cf5d9f0e.d57e7", - "order": 4, - "width": 0, - "height": 0, - "options": [ - { - "label": "Latitude (36.574439°N or 36°57.4439'N)", - "value": "object_lat_end", - "type": "text", - "required": true, - "rows": null - }, - { - "label": "Longitude (110.42100°W or 110°4.2100'W)", - "value": "object_lon_end", - "type": "text", - "required": true, - "rows": null - }, - { - "label": "Date (YYYY-MM-DD UTC)", - "value": "object_date_end", - "type": "text", - "required": true, - "rows": null - }, - { - "label": "Time (HH:MM, UTC 24h)", - "value": "object_time_end", - "type": "text", - "required": true, - "rows": null - } - ], - "formValue": { - "object_lat_end": "", - "object_lon_end": "", - "object_date_end": "", - "object_time_end": "" - }, - "payload": "", - "submit": "Validate", - "cancel": "", - "topic": "net_retrieval_location", - "topicType": "str", - "splitLayout": false, - "x": 640, - "y": 660, - "wires": [ - [ - "14658615.47c862", - "9c8f370d124a55e4" - ] - ] - }, - { - "id": "14658615.47c862", - "type": "function", - "z": "b771c342.49603", - "name": "Validate Location / Timestamp", - "func": "// Code added here will be run once\n// whenever the node is started.\nfunction ConvertDDMMToDD(input) {\n // Input Format 36°57.4439'N, 110°4.2100'W\n // From https://stackoverflow.com/questions/1140189/converting-latitude-and-longitude-to-decimal-values\n if (!input.match(/\\d+°\\d+\\.*\\d*\\'[NSEW]/)){\n \treturn \"parsing error\"\n }\n var parts = input.split(/[^\\d.\\w]+/)\n if (parts.length != 3){\n \treturn \"parsing error\"\n }\n var dd = Number(parts[0]) + Number(parts[1])/60\n return dd.toFixed(6) + parts[2]\n}\n\nfunction ValidateCoordinates(input, lat){\n // Input Format 36.574439°N, 110.42100°W\n // Or 36°57.4439'N, 110°4.2100'W\n if (input.match(\"'\")){\n input = ConvertDDMMToDD(input)\n }\n \n var error = {}\n\n if (input.startsWith(\"parsing error\")){\n error.topic = \"Error with the \"\n error.payload = \"You need to respect the format example, 36.574439°N or 36°57.4439'N\"\n return [null, error]\n }\n \n var direction = input.match(/[NSEW]/)\n var position = input.match(/[\\+\\-\\d\\.]+/)\n \n if (direction === null){\n error.topic = \"Error with the \"\n error.payload = \"You need to explicitely enter N/S/E/W\"\n return [null, error]\n }\n \n // Test that position is only made of digits!\n if(/^[\\+\\-]/.test(position)){\n error.topic = \"Error with the \"\n error.payload = \"Use of +/- sign is inconsistent with N/S/E/W letter! Please only use N/S/E/W!\"\n return [null, error]\n }\n \n var dd = Number(position)\n if (lat){\n // Check latitude\n if (direction == \"S\" || direction == \"N\") {\n if (dd>90.0){\n error.topic = \"Error with the \"\n error.payload = \"Latitude is more than 90°\"\n return [null, error]\n }\n }\n if (direction == \"W\" || direction == \"E\") {\n error.topic = \"Error with the \"\n error.payload = \"This is not a Latitude!\"\n return [null, error]\n }\n }\n else{\n // Check longitude\n if (direction == \"W\" || direction == \"E\") {\n if (dd>180.0){\n error.topic = \"Error with the \"\n error.payload = \"Longitude is more than 180°\"\n return [null, error]\n }\n }\n if (direction == \"N\" || direction == \"S\") {\n error.topic = \"Error with the \"\n error.payload = \"This is not a Longitude!\"\n return [null, error]\n }\n }\n \n if (direction == \"S\" || direction == \"W\") {\n dd = dd * -1\n } // Don't do anything for N or E\n return [dd.toFixed(4), null]\n \n}\n\nfunction ValidateDate(input){\n // Input Format 2020-12-25\n var error = {};\n \n if (! /20\\d{2}-[0-1]\\d-[0-3]\\d/.test(input)){\n error.topic = \"Error with the date\";\n error.payload = \"The date should respect the ISO format YYYY-MM-DD\";\n return [null, error];\n }\n else {\n var date = input.match(/\\d+/g);\n if (!((2000 < date[0]) && (date[0] < 2100))){\n error.topic = \"Error with the date\"\n error.payload = \"The year should be between 2000 and 2100\"\n return [null, error]\n }\n else if (!((0 < date[1]) && (date[1] <= 12))){\n error.topic = \"Error with the date\"\n error.payload = \"The month should be between 01 and 12\"\n return [null, error]\n }\n else if (!((0 < date[2]) && (date[2] <= 31))){\n error.topic = \"Error with the date\"\n error.payload = \"The day should be between 01 and 31\"\n return [null, error]\n }\n }\n return [input.replace(/-/g, ''), null]\n}\n\nfunction ValidateTime(input){\n // Input Format 12:00\n var error = {}\n \n if (! /[0-2]?\\d:[0-5]\\d/.test(input)){\n error.topic = \"Error with the time\"\n error.payload = \"The date should respect the ISO format HH:MM\"\n return [null, error]\n }\n else {\n var time = input.match(/\\d+/g)\n \n if (!((0 <= time[0]) && (time[0] < 24))){\n error.topic = \"Error with the time\"\n error.payload = \"The hours should be 0 and 23.\"\n return [null, error]\n }\n else if (!((0 <= time[1]) && (time[1] < 60))){\n error.topic = \"Error with the time\"\n error.payload = \"The minutes should be between 0 and 59\"\n return [null, error]\n }\n }\n return [input.replace(/:/g, ''), null]\n}\n\n\nvar ret\nvar payload_for_form = {payload:{}}\nmsg.valid = false\n\nif (msg.topic == \"culture_timestamp\"){\n ret = ValidateDate(msg.payload.object_date)\n if (ret[1] !== null){\n msg.topic = ret[1].topic + \" of the sample\"\n msg.payload = ret[1].payload\n return [msg, null]\n }\n global.set(\"object_date\", ret[0])\n \n ret = ValidateTime(msg.payload.object_time)\n if (ret[1] !== null){\n msg.topic = ret[1].topic + \" of the sample\"\n msg.payload = ret[1].payload\n return [msg, null]\n }\n global.set(\"object_time\", ret[0])\n return [{topic: \"Date and time format valid!\", payload: \"All good!\", valid: true}, payload_for_form]\n}\nelse if (msg.topic == \"net_retrieval_location\"){\n ret = ValidateCoordinates(msg.payload.object_lat_end, true);\n if (ret[1] !== null){\n msg.topic = ret[1].topic + \" Latitude\"\n msg.payload = ret[1].payload\n return [msg, null]\n }\n global.set(\"object_lat_end\", ret[0])\n ret = ValidateCoordinates(msg.payload.object_lon_end, false)\n if (ret[1] !== null){\n msg.topic = ret[1].topic + \" Longitude\"\n msg.payload = ret[1].payload\n return [msg, null]\n }\n global.set(\"object_lon_end\", ret[0]);\n \n ret = ValidateDate(msg.payload.object_date_end)\n if (ret[1] !== null){\n msg.topic = ret[1].topic + \" of the sample retrieval\"\n msg.payload = ret[1].payload\n return [msg, null]\n }\n global.set(\"object_date_end\", ret[0])\n \n ret = ValidateTime(msg.payload.object_time_end)\n if (ret[1] !== null){\n msg.topic = ret[1].topic + \" of the sample retrieval\"\n msg.payload = ret[1].payload\n return [msg, null]\n }\n global.set(\"object_time_end\", ret[0])\n}\nelse{\n ret = ValidateCoordinates(msg.payload.object_lat, true);\n if (ret[1] !== null){\n msg.topic = ret[1].topic + \" Latitude\";\n msg.payload = ret[1].payload\n return [msg, null]\n }\n global.set(\"object_lat\", ret[0]);\n payload_for_form.payload[\"object_lat_end\"] = msg.payload.object_lat;\n \n ret = ValidateCoordinates(msg.payload.object_lon, false);\n if (ret[1] !== null){\n msg.topic = ret[1].topic + \" Longitude\"\n msg.payload = ret[1].payload\n return [msg, null]\n }\n global.set(\"object_lon\", ret[0])\n payload_for_form.payload[\"object_lon_end\"] = msg.payload.object_lon;\n\n ret = ValidateDate(msg.payload.object_date)\n if (ret[1] !== null){\n msg.topic = ret[1].topic + \" of the sample\"\n msg.payload = ret[1].payload\n return [msg, null]\n }\n global.set(\"object_date\", ret[0])\n payload_for_form.payload[\"object_date_end\"] = msg.payload.object_date;\n \n ret = ValidateTime(msg.payload.object_time)\n if (ret[1] !== null){\n msg.topic = ret[1].topic + \" of the sample\"\n msg.payload = ret[1].payload\n return [msg, null]\n }\n global.set(\"object_time\", ret[0])\n payload_for_form.payload[\"object_time_end\"] = msg.payload.object_time;\n}\nreturn [{topic: \"Coordinates valid!\", payload: \"All good!\", valid: true}, payload_for_form]\n", - "outputs": 2, - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 930, - "y": 620, - "wires": [ - [ - "c0ce5626.b6c5", - "9a18a4b4.178448" - ], - [ - "56d40584.eff4e4" - ] - ], - "inputLabels": [ - "Location form data" - ], - "outputLabels": [ - "Message", - "Location validated" - ] - }, - { - "id": "46eb1bf8.3dc5f4", - "type": "function", - "z": "b771c342.49603", - "name": "Net check", - "func": "var decknet = {}\nvar activation_msg = {}\n\nif (msg.payload.startsWith(\"net_decknet\")){\n decknet.enabled = true;\n}\nelse {\n decknet.enabled = false;\n}\n\nif (msg.payload.startsWith(\"net\")){\n activation_msg.payload = {\"group\":{\"show\":[\"Sample_Net_Metadata\"],\"hide\":[\"Sample_Sample_Location\",\"Sample_Culture_Date_and_Time\"]}};\n}\nelse if (msg.payload != \"culture\" && msg.payload != \"test\"){\n activation_msg.payload = {\"group\":{\"show\":[\"Sample_Sample_Location\"], \"hide\":[\"Sample_Net_Metadata\",\"Sample_Culture_Date_and_Time\"]}};\n}\n\n\nreturn [decknet, activation_msg];", - "outputs": 2, - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 1080, - "y": 240, - "wires": [ - [ - "516375fd.2ed61c", - "470e382a.25691", - "fbe32ac8.ff6a38" - ], - [ - "cbb123ab.fd3428" - ] - ], - "outputLabels": [ - "decknet activation", - "group display control" - ] - }, - { - "id": "516375fd.2ed61c", - "type": "ui_text_input", - "z": "b771c342.49603", - "name": "sample_total_flowmeter_start", - "label": "Decknet flowmeter start", - "tooltip": "in L", - "group": "cf5d9f0e.d57e7", - "order": 6, - "width": 5, - "height": 1, - "passthru": false, - "mode": "text", - "delay": "300", - "topic": "sample_total_flowmeter_start", - "sendOnBlur": true, - "className": "", - "topicType": "str", - "x": 1340, - "y": 220, - "wires": [ - [ - "e9bc112c.eb75f8" - ] - ] - }, - { - "id": "470e382a.25691", - "type": "ui_text_input", - "z": "b771c342.49603", - "name": "sample_total_flowmeter_end", - "label": "Decknet flowmeter end", - "tooltip": "in L", - "group": "cf5d9f0e.d57e7", - "order": 7, - "width": 5, - "height": 1, - "passthru": false, - "mode": "text", - "delay": "300", - "topic": "sample_total_flowmeter_end", - "sendOnBlur": true, - "className": "", - "topicType": "str", - "x": 1340, - "y": 260, - "wires": [ - [ - "e9bc112c.eb75f8" - ] - ] - }, - { - "id": "fbe32ac8.ff6a38", - "type": "ui_template", - "z": "b771c342.49603", - "group": "cf5d9f0e.d57e7", - "name": "Decknet flowmeter read", - "order": 5, - "width": 10, - "height": 1, - "format": "
\n

Decknet flowmeter readings

\n

Those values are used to calculate sample_total_volume. Values are in L.

\n
\n", - "storeOutMessages": true, - "fwdInMessages": true, - "resendOnRefresh": true, - "templateScope": "local", - "x": 1330, - "y": 180, - "wires": [ - [] - ] - }, - { - "id": "f408a273.4fb538", - "type": "function", - "z": "b771c342.49603", - "name": "get sample_gear_net_opening", - "func": "if (msg.payload.sample_gear_net_opening === null){\n msg.payload = 0;\n global.set(\"sample_gear_net_opening\",msg.payload);\n}\nelse\n{\n msg.payload = msg.payload.sample_gear_net_opening;\n}\nreturn msg;", - "outputs": 1, - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 350, - "y": 320, - "wires": [ - [ - "e967b844.46aa48" - ] - ] - }, - { - "id": "8dff1648.82e42", - "type": "function", - "z": "b771c342.49603", - "name": "get object_depth_max", - "func": "if (msg.payload.object_depth_max === null){\n msg.payload = 0;\n global.set(\"object_depth_max\",msg.payload);\n}\nelse\n{\n msg.payload = msg.payload.object_depth_max;\n}\nreturn msg;", - "outputs": 1, - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 320, - "y": 240, - "wires": [ - [ - "9c7f7fc9.c8d3a" - ] - ] - }, - { - "id": "9f04c5ec.75f3d8", - "type": "function", - "z": "b771c342.49603", - "name": "get object_depth_min", - "func": "if (msg.payload.object_depth_min === null){\n msg.payload = 0;\n global.set(\"object_depth_min\",msg.payload);\n}\nelse\n{\n msg.payload = msg.payload.object_depth_min;\n}\nreturn msg;", - "outputs": 1, - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 320, - "y": 280, - "wires": [ - [ - "317eeeb7.8d3042" - ] - ] - }, - { - "id": "9a18a4b4.178448", - "type": "function", - "z": "b771c342.49603", - "name": "calculate sample_total_volume", - "func": "\n/*object_lat = 33.95 \nobject_lon = 118.4 \nobject_lat_end = 40.6333 \nobject_lon_end = 73.78333\nsample_gear_net_opening = 40*/\n\n// Copyright 1997 Ed Williams. All rights reserved\n// Adapted by Romain Bazile - Ocean Trotter - 01-2021\n\ndecpl=4 // Dec places of minutes output\n\nellipse = {\"name\":\"WSG84\", \"a\":6378.137/1.852, \"invf\":298.257223563}\n\nfunction ComputeDistance(lat1, lon1, lat2, lon2){\n var d,crs12,crs21\n var argacos\n var a,invf\n \n // lat and lon in radian\n lat1=(Math.PI/180)*lat1\n lat2=(Math.PI/180)*lat2\n lon1=(Math.PI/180)*lon1\n lon2=(Math.PI/180)*lon2\n \n //alert(\"lat1=\" + lat1 + \"lon1=\" + lon1 +\"\\nlat2=\" +lat2+ \"lon2=\"+lon2)\n \n /* get distance conversion factor */\n dc=1.852 //km\n //alert(\"dc=\" +dc)\n \n //showProps(ellipse,\"ellipse\")\n \n // elliptic code\n d=crsdist_ell(lat1,-lon1,lat2,-lon2,ellipse) // ellipse uses East negative\n d=d*dc // go to physical units\n \n //alert(\"d=\"+d+\" crs12=\"+crs12+\" crs21=\"+crs21)\n return d\n}\n\nfunction crsdist(lat1,lon1,lat2,lon2){ // radian args\n /* compute course and distance (spherical) */\n if ((lat1+lat2===0) && (Math.abs(lon1-lon2)==Math.PI) && \n (Math.abs(lat1) != (Math.PI/180)*90)){\t\n \talert(\"Course between antipodal points is undefined\")\n }\n \n d = Math.acos(Math.sin(lat1)*Math.sin(lat2)+Math.cos(lat1)*Math.cos(lat2)*Math.cos(lon1-lon2))\n return d\n}\n\nfunction crsdist_ell(glat1,glon1,glat2,glon2,ellipse){\n // glat1 initial geodetic latitude in radians N positive \n // glon1 initial geodetic longitude in radians E positive \n // glat2 final geodetic latitude in radians N positive \n // glon2 final geodetic longitude in radians E positive \n a=ellipse.a\n f=1/ellipse.invf\n //alert(\"a=\"+a+\" f=\"+f)\n var r, tu1, tu2, cu1, su1, cu2, s1, b1, f1\n var x, sx, cx, sy, cy,y, sa, c2a, cz, e, c, d\n var EPS= 0.00000000005\n var faz, baz, s\n var iter=1\n var MAXITER=100\n if ((glat1+glat2===0) && (Math.abs(glon1-glon2)==Math.PI)){\n alert(\"Course and distance between antipodal points is undefined\")\n glat1=glat1+0.00001 // allow algorithm to complete\n }\n if (glat1==glat2 && (glon1==glon2 || Math.abs(Math.abs(glon1-glon2)-2*Math.PI) < EPS)){\n alert(\"Points 1 and 2 are identical- course undefined\")\n out=new MakeArray(0)\n out.d=0\n out.crs12=0\n out.crs21=Math.PI\n return out\n }\n r = 1 - f\n tu1 = r * Math.tan (glat1)\n tu2 = r * Math.tan (glat2)\n cu1 = 1 / Math.sqrt (1 + tu1 * tu1)\n su1 = cu1 * tu1\n cu2 = 1 / Math.sqrt (1 + tu2 * tu2)\n s1 = cu1 * cu2\n b1 = s1 * tu2\n f1 = b1 * tu1\n x = glon2 - glon1\n d = x + 1 // force one pass\n while ((Math.abs(d - x) > EPS) && (iter < MAXITER))\n {\n iter=iter+1\n sx = Math.sin (x)\n // alert(\"sx=\"+sx)\n cx = Math.cos (x)\n tu1 = cu2 * sx\n tu2 = b1 - su1 * cu2 * cx\n sy = Math.sqrt(tu1 * tu1 + tu2 * tu2)\n cy = s1 * cx + f1\n y = atan2 (sy, cy)\n sa = s1 * sx / sy\n c2a = 1 - sa * sa\n cz = f1 + f1\n if (c2a > 0)\n cz = cy - cz / c2a\n e = cz * cz * 2 - 1\n c = ((-3 * c2a + 4) * f + 4) * c2a * f / 16\n d = x\n x = ((e * cy * c + cz) * sy * c + y) * sa\n x = (1 - c) * x * f + glon2 - glon1\n }\n x = Math.sqrt ((1 / (r * r) - 1) * c2a + 1)\n x +=1\n x = (x - 2) / x\n c = 1 - x\n c = (x * x / 4 + 1) / c\n d = (0.375 * x * x - 1) * x\n x = e * cy\n d = ((((sy*sy*4-3)*(1-e-e)*cz*d/6-x)*d/4+cz)*sy*d+y)*c*a*r\n if (Math.abs(iter-MAXITER)0) && (y>=0)){ out= Math.atan(y/x)}\n if ((x >0) && (y<0)) { out= Math.atan(y/x)+2*Math.PI}\n if ((x===0) && (y>0)) { out= Math.PI/2}\n if ((x===0) && (y<0)) { out= 3*Math.PI/2} \n if ((x===0) && (y===0)) {\n alert(\"atan2(0,0) undefined\")\n out= 0\n } \n return out\n}\n\nfunction showProps(obj,objName){\n var result=\"\"\n for (var i in obj){\n result +=objName + \".\" + i + \" = \" + obj[i] + \"\\n\"\n }\n alert(result)\n}\n\n\nif (msg.valid){\n msg.topic=\"sample_total_volume\"\n \n var object_lat_end = global.get(\"object_lat_end\")\n var object_lon_end = global.get(\"object_lon_end\")\n var sample_sampling_gear = global.get(\"sample_sampling_gear\")\n \n if (sample_sampling_gear.startsWith(\"net\") && sample_sampling_gear != \"net_decknet\") {\n if (!(isNaN(object_lat_end) && isNaN(object_lon_end))){\n var object_lat = global.get(\"object_lat\")\n var object_lon = global.get(\"object_lon\")\n var sample_gear_net_opening = global.get(\"sample_gear_net_opening\");\n\n distance_km = ComputeDistance(object_lat, object_lon, object_lat_end, object_lon_end)\n\n sample_total_volume = distance_km*(Math.PI*(sample_gear_net_opening/2)*(sample_gear_net_opening/2)) // liters\n sample_total_volume = Math.round(sample_total_volume + Number.EPSILON)\n msg.payload = sample_total_volume\n return msg\n }\n }\n}", - "outputs": 1, - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 930, - "y": 760, - "wires": [ - [ - "4f6afc5a.81e454" - ] - ] - }, - { - "id": "4fb4e0ad.c417c", - "type": "ui_text", - "z": "b771c342.49603", - "group": "fc5e4e6f.5b1c8", - "order": 6, - "width": 5, - "height": 1, - "name": "Latitude", - "label": "Latitude", - "format": "{{msg.payload.lat.deg}}°{{msg.payload.lat.min}}'{{msg.payload.lat.sec}}{{msg.payload.lat.dir}}", - "layout": "col-center", - "x": 700, - "y": 1120, - "wires": [] - }, - { - "id": "8d2b5026.13e6e8", - "type": "ui_text", - "z": "b771c342.49603", - "group": "fc5e4e6f.5b1c8", - "order": 7, - "width": 5, - "height": 1, - "name": "Longitude", - "label": "Longitude", - "format": "{{msg.payload.lon.deg}}°{{msg.payload.lon.min}}'{{msg.payload.lon.sec}}{{msg.payload.lon.dir}}", - "layout": "col-center", - "x": 700, - "y": 1160, - "wires": [] - }, - { - "id": "258b4562.9f778a", - "type": "function", - "z": "b771c342.49603", - "name": "Convert DD to DMS", - "func": "function ConvertDDToDMS(D, lng){\n // from https://stackoverflow.com/a/5786281/2108279\n return {\n dir : D<0?lng?'W':'S':lng?'E':'N',\n deg : 0|(D<0?D=-D:D),\n min : 0|D%1*60,\n sec :(0|D*60%1*6000)/100\n };\n}\n\nmsg.payload = {\n \"lat\":ConvertDDToDMS(msg.payload.lat, false),\n \"lon\":ConvertDDToDMS(msg.payload.lon, true)\n};\nreturn msg;", - "outputs": 1, - "noerr": 0, - "initialize": "", - "finalize": "", - "x": 490, - "y": 1140, - "wires": [ - [ - "4fb4e0ad.c417c", - "8d2b5026.13e6e8" - ] - ] - }, - { - "id": "7c4ce5f3.62dd5c", - "type": "ui_text", - "z": "b771c342.49603", - "group": "fc5e4e6f.5b1c8", - "order": 4, - "width": 2, - "height": 1, - "name": "Speed", - "label": "Speed", - "format": "{{msg.payload}} kts", - "layout": "col-center", - "x": 690, - "y": 1200, - "wires": [] - }, - { - "id": "54e37580.fdc31c", - "type": "ui_text", - "z": "b771c342.49603", - "group": "fc5e4e6f.5b1c8", - "order": 5, - "width": 2, - "height": 1, - "name": "Direction", - "label": "Direction", - 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Sample

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id:

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project:\n

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ship:

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operator:\n

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sampling gear:\n

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concentrated volume:\n

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gear net opening:\n

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total volume filtered:\n

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Acquisition

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id:

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instrument:\n

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instrument id:\n

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camera:

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celltype: \n

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maximum mesh:\n

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max esd: \n

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magnification:\n

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software: \n

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Object

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latitude: \n

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longitude: \n

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latitude end:\n

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longitude end:\n

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date:

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time:

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date end:\n

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time end:\n

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depth min:\n

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depth max:\n

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Process

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pixel: \n

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id:

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\"update_config\",\n\t\"config\": {\n \t\"description\": {\n \t\t\"sample_project\": \"Project's name\",\n \t\t\"sample_id\": \"Sample ID\",\n \t\t\"sample_uuid\": \"Sample UUID (Autogenerated)\",\n \t\t\"sample_ship\": \"Ship's name\",\n \t\t\"sample_operator\": \"Operator's name\",\n \t\t\"sample_sampling_gear\": \"Sampling gear used\",\n \t\t\"sample_concentrated_sample_volume\": \"Volume of concentrated sample, in mL\",\n \t\t\"sample_total_volume\": \"Total volume filtered by the net used, in L\",\n \t\t\"sample_dilution_factor\": \"Dilution factor of the sample, 0.5 if diluted by 2, 2 if concentrated by 2\",\n \t\t\"sample_speed_through_water\": \"Speed of the boat through water when sampling, in kts\",\n \t\t\"acq_id\": \"Acquisition ID\",\n \t\t\"acq_uuid\": \"Acquisition UUID (Autogenerated)\",\n \t\t\"acq_instrument\": \"Instrument type\",\n \t\t\"acq_instrument_id\": \"Instrument ID\",\n \t\t\"acq_celltype\": \"Flow cell dimension thickness, in µm\",\n \t\t\"acq_minimum_mesh\": \"Minimum filtration mesh size, in µm\",\n \t\t\"acq_maximum_mesh\": \"Maximum filtration mesh size, in µm\",\n \t\t\"acq_min_esd\": \"\",\n \t\t\"acq_max_esd\": \"\",\n \t\t\"acq_volume\": \"Pumped volume, in mL\",\n\t\t \"acq_imaged_volume\": \"Total imaged volume, in mL\",\n \t\t\"acq_magnification\": \"Optical magnification\",\n \t\t\"acq_fnumber_objective\": \"Focal length of the objective, in mm\",\n \t\t\"acq_camera_name\": \"Name of the camera used\",\n \t\t\"acq_nb_frame\": \"Number of picture taken\",\n \"acq_local_datetime\": \"Instrument local datetime\",\n \"acq_camera_resolution\": \"Resolution of the images\",\n \"acq_camera_iso\": \"ISO Number of the images\",\n \"acq_camera_shutter_speed\": \"Shutter speed of the images, in µs\",\n \"acq_software\": \"Software version number\",\n \t\t\"object_date\": \"Sample collection date (or beginning if using a net)\",\n \t\t\"object_time\": \"Sample collection time (or beginning if using a net)\",\n \t\t\"object_lat\": \"Sample collection latitude (or beginning if using a net)\",\n \t\t\"object_lon\": \"Sample collection longitude (or beginning if using a net)\",\n \t\t\"object_depth_min\": \"Sample collection minimal depth, in m\",\n \t\t\"object_depth_max\": \"Sample collection maximum depth, in m\",\n \t\t\"process_pixel\": \"Pixel imaging resolution, in µm/pixel\",\n \t\t\"process_datetime\": \"Segmentation timestamp\",\n \t\t\"process_id\": \"Segmentation ID\",\n \t\t\"process_uuid\": \"Segmentation UUID (Autogenerated)\",\n \t\t\"process_source\": \"Code source link of the executed code\",\n \t\t\"process_commit\": \"Version reference of the executed code\",\n \t\t\"sample_gear_net_opening\": \"Sample mouth opening dimension, in mm\",\n \t\t\"object_date_end\": \"Sample end collection date when using a net\",\n \t\t\"object_time_end\": \"Sample end collection time when using a net\",\n \t\t\"object_lat_end\": \"Sample end collection latitude when using a net\",\n \t\t\"object_lon_end\": \"Sample end collection longitude when using a net\",\n \t},\n\t\t\"sample_project\": global.get(\"sample_project\"),\n\t\t\"sample_id\": global.get(\"sample_project\") + \"_\" + global.get(\"sample_id\"),\n\t\t\"sample_ship\": global.get(\"sample_ship\"),\n\t\t\"sample_operator\": global.get(\"sample_operator\"),\n\t\t\"sample_sampling_gear\": global.get(\"sample_sampling_gear\"),\n\t\t\"sample_concentrated_sample_volume\": global.get(\"sample_concentrated_sample_volume\"),\n\t\t\"sample_total_volume\": global.get(\"sample_total_volume\"),\n\t\t\"sample_dilution_factor\": global.get(\"sample_dilution_factor\"),\n\t\t\"sample_speed_through_water\": global.get(\"sample_speed_through_water\"),\n\n\t\t\"acq_id\": global.get(\"sample_project\") + \"_\" + global.get(\"sample_id\")+ \"_\" + global.get(\"acq_id\"),\n\t\t\"acq_instrument\": global.get(\"acq_instrument\"),\n\t\t\"acq_instrument_id\": global.get(\"acq_instrument_id\"),\n\t\t\"acq_celltype\": global.get(\"acq_celltype\"),\n\t\t\"acq_minimum_mesh\": global.get(\"acq_minimum_mesh\"),\n\t\t\"acq_maximum_mesh\": global.get(\"acq_maximum_mesh\"),\n\t\t\"acq_min_esd\": global.get(\"acq_min_esd\"),\n\t\t\"acq_max_esd\": global.get(\"acq_max_esd\"),\n\t\t\"acq_volume\": global.get(\"acq_volume\"),\n\t\t\"acq_imaged_volume\": global.get(\"acq_imaged_volume\"),\n\t\t\"acq_magnification\": global.get(\"acq_magnification\"),\n\t\t\"acq_fnumber_objective\": global.get(\"acq_fnumber_objective\"),\n\t\t\"acq_camera\": global.get(\"acq_camera\"),\n\t\t\"acq_nb_frame\": global.get(\"nb_frame\"),\n\t\t\"acq_software\": global.get(\"acq_software\"),\n\n\t\t\"object_date\": global.get(\"object_date\"),\n\t\t\"object_time\": global.get(\"object_time\"),\n\t\t\"object_lat\": global.get(\"object_lat\"),\n\t\t\"object_lon\": global.get(\"object_lon\"),\n\t\t\"object_depth_min\": global.get(\"object_depth_min\"),\n\t\t\"object_depth_max\": global.get(\"object_depth_max\"),\n\n\t\t\"process_pixel\": global.get(\"process_pixel\"),\n\t\t\"process_source\": global.get(\"process_source\"),\n\t\t\"process_commit\": global.get(\"process_commit\")\n\t}\n};\n\nif (msg.payload.config.sample_sampling_gear.startsWith(\"net\")) {\n\tmsg.payload.config[\"sample_gear_net_opening\"] = global.get(\"sample_gear_net_opening\")\n\tmsg.payload.config[\"object_date_end\"] = global.get(\"object_date_end\")\n\tmsg.payload.config[\"object_time_end\"] = global.get(\"object_time_end\")\n\tmsg.payload.config[\"object_lat_end\"] = global.get(\"object_lat_end\")\n\tmsg.payload.config[\"object_lon_end\"] = global.get(\"object_lon_end\")\n}\n\nif ( msg.send == true){\n\treturn [msg, msg]\n}\nelse{\n\treturn [msg, null]\n}", - "outputs": 2, - "timeout": "", - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 910, - "y": 440, - "wires": [ - [ - "29be525e.0c87fe" - ], - [ - "c3e50240.82aa58" - ] - ] - }, - { - "id": "40c12463.a1f84c", - "type": "delay", - "z": "baa1e3d9.cb29d", - "name": "", - "pauseType": "delay", - "timeout": "1", - "timeoutUnits": "seconds", - "rate": "1", - "nbRateUnits": "1", - "rateUnits": "second", - "randomFirst": "1", - "randomLast": "5", - "randomUnits": "seconds", - "drop": false, - "outputs": 1, - "x": 940, - "y": 480, - "wires": [ - [ - "c3e50240.82aa58" - ] - ] - }, - { - "id": "4d1b02cb.83b51c", - "type": "ui_button", - "z": "baa1e3d9.cb29d", - "name": "", - "group": "4322c187.e73e5", - "order": 10, - "width": 5, - "height": 1, - "passthru": false, - "label": "Update config", - "tooltip": "", - "color": "", - "bgcolor": "", - "className": "", - "icon": "save", - "payload": "", - "payloadType": "str", - "topic": "imager/image", - "topicType": "str", - "x": 680, - "y": 440, - "wires": [ - [ - "52ea7d01.711034" - ] - ] - }, - { - "id": "5921d0d0.a3d568", - "type": "subflow:1c24ad9c.bebec2", - "z": "baa1e3d9.cb29d", - "name": "", - "env": [], - "x": 110, - "y": 220, - "wires": [ - [ - "f3658d30.b8448", - "de2c90cf.b73b08", - "4be09c97f86897d9", - "f573206abefa9518", - "f948151ab4031df4", - "5e3dec55.881074", - "d3ca8847.4d1ae" - ] - ] - }, - { - "id": "f3658d30.b8448", - "type": "function", - "z": "baa1e3d9.cb29d", - "name": "get acq_id", - "func": "msg.payload = msg.payload.acq_id;\nreturn msg;", - "outputs": 1, - "noerr": 0, - "initialize": "", - "finalize": "", - "x": 330, - "y": 240, - "wires": [ - [ - "6b34c456.83178c" - ] - ] - }, - { - "id": "de2c90cf.b73b08", - "type": "function", - "z": "baa1e3d9.cb29d", - "name": "get acq_celltype", - "func": "msg.topic = 'acq_celltype';\nmsg.payload = msg.payload.acq_celltype;\nreturn msg;", - "outputs": 1, - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 340, - "y": 80, - "wires": [ - [ - "cc0ca68b.4263a8" - ] - ] - }, - { - "id": "5e3dec55.881074", - "type": "function", - "z": "baa1e3d9.cb29d", - "name": "get acq_minimum_mesh", - "func": "msg.payload = msg.payload.acq_minimum_mesh;\nreturn msg;", - "outputs": 1, - "noerr": 0, - "x": 370, - "y": 160, - 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- ] - }, - { - "id": "51b4d0df.d70a88", - "type": "ui_text_input", - "z": "baa1e3d9.cb29d", - "name": "nb_frame", - "label": "Number of images to acquire", - "tooltip": "", - "group": "4322c187.e73e5", - "order": 2, - "width": 5, - "height": 1, - "passthru": true, - "mode": "number", - "delay": 300, - "topic": "nb_frame", - "sendOnBlur": true, - "className": "", - "topicType": "str", - "x": 680, - "y": 280, - "wires": [ - [ - "fb887036.12429", - "67091ac0.8f9f6c", - "99b11fe4.2795d" - ] - ] - }, - { - "id": "999065ca.27edb8", - "type": "switch", - "z": "baa1e3d9.cb29d", - "name": "topic filter", - "property": "topic", - "propertyType": "msg", - "rules": [ - { - "t": "eq", - "v": "status/pump", - "vt": "str" - }, - { - "t": "eq", - "v": "status/focus", - "vt": "str" - }, - { - "t": "eq", - "v": "status/imager", - "vt": "str" - } - ], - "checkall": "true", - "repair": false, - "outputs": 3, - "x": 320, - "y": 800, - "wires": [ - [ - "a46a1e7f.88a92", - "6742014e.1bb238" - ], - [ - "c516d9ea.f7f6e", - "6742014e.1bb238" - ], - [ - "307c851e.fb0f7a", - "2b9d6988.d84836" - ] - ] - }, - { - "id": "2b009bd7.c07004", - "type": "ui_text", - "z": "baa1e3d9.cb29d", - "group": "70de8209.68416c", - "order": 3, - "width": 10, - "height": 2, - "name": "imager", - "label": "Imager status:", - "format": "{{msg.payload.status}}", - "layout": "col-center", - "x": 770, - "y": 740, - "wires": [] - }, - { - "id": "c516d9ea.f7f6e", - "type": "ui_text", - "z": "baa1e3d9.cb29d", - "group": "70de8209.68416c", - "order": 1, - "width": 5, - "height": 1, - "name": "focus", - "label": "Focus status:", - "format": "{{msg.payload.status}}", - "layout": "col-center", - "x": 770, - "y": 700, - "wires": [] - }, - { - "id": "a46a1e7f.88a92", - "type": "ui_text", - "z": "baa1e3d9.cb29d", - "group": "70de8209.68416c", - "order": 2, - "width": 5, - "height": 1, - "name": "pump", - "label": "Pump status:", - "format": "{{msg.payload.status}}", - "layout": "col-center", - "x": 770, - "y": 660, - "wires": [] - }, - { - "id": "bb628f8d.98f108", - "type": "link in", - "z": "baa1e3d9.cb29d", - "name": "Status for fluidic module", - "links": [ - "58f2e0f.4e8b12" - ], - "x": 175, - "y": 800, - "wires": [ - [ - "999065ca.27edb8" - ] - ] - }, - { - "id": "307c851e.fb0f7a", - "type": "switch", - "z": "baa1e3d9.cb29d", - "name": "Imaging state", - "property": "payload", - "propertyType": "msg", - "rules": [ - { - "t": "jsonata_exp", - "v": "$contains(msg.payload.status, \"jpg\")\t", - "vt": "jsonata" - }, - { - "t": "else" - } - ], - "checkall": "false", - "repair": false, - "outputs": 2, - "x": 540, - "y": 880, - "wires": [ - [ - "db8e3dde.44efb8" - ], - [ - "6742014e.1bb238" - ] - ] - }, - { - "id": "db8e3dde.44efb8", - "type": "function", - "z": "baa1e3d9.cb29d", - "name": "img_counter", - "func": "img_counter=flow.get('img_counter')\nif (img_counter === undefined || img_counter === \"\"){\n img_counter = 0\n}\nimg_counter=img_counter+1\nflow.set('img_counter',img_counter)\nmsg.payload = img_counter\nmsg.payload = (100 * img_counter/global.get('nb_frame')).toFixed(2)\nreturn msg;", - "outputs": 1, - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 770, - "y": 860, - "wires": [ - [ - "1a2e721a.f5e876" - ] - ] - }, - { - "id": "59164d65.e7993c", - "type": "ui_toast", - "z": "baa1e3d9.cb29d", - "position": "top right", - "displayTime": "5", - "highlight": "", - "sendall": true, - "outputs": 0, - "ok": "OK", - "cancel": "", - "raw": false, - "topic": "", - "name": "", - "x": 1260, - "y": 900, - "wires": [] - }, - { - "id": "8c7348aa.1962e8", - "type": "template", - "z": "baa1e3d9.cb29d", - "name": "Create sentence", - "field": "payload", - "fieldType": "msg", - "format": "handlebars", - "syntax": "mustache", - "template": "The {{topic}} is {{payload.status}}", - "output": "str", - "x": 1050, - "y": 900, - "wires": [ - [ - "59164d65.e7993c" - ] - ] - }, - { - "id": "6742014e.1bb238", - "type": "change", - "z": "baa1e3d9.cb29d", - "name": "Remove high-level topic", - "rules": [ - { - "t": "change", - "p": "topic", - "pt": "msg", - "from": "status/", - "fromt": "str", - "to": "", - "tot": "str" - } - ], - "action": "", - "property": "", - "from": "", - "to": "", - "reg": false, - "x": 810, - "y": 900, - "wires": [ - [ - "8c7348aa.1962e8" - ] - ] - }, - { - "id": "1a2e721a.f5e876", - "type": "ui_gauge", - "z": "baa1e3d9.cb29d", - "name": "progress donut", - "group": "b5d61bc7.54fe48", - "order": 3, - "width": 6, - "height": 3, - "gtype": "donut", - "title": "", - "label": "%", - "format": "{{value}}", - "min": 0, - "max": "100", - "colors": [ - "#ffa83f", - "#e6ff02", - "#00dfe9" - ], - "seg1": "50", - "seg2": "75", - "x": 1260, - "y": 860, - "wires": [] - }, - { - "id": "9bd72495.a8a098", - "type": "ui_text", - "z": "baa1e3d9.cb29d", - "group": "4322c187.e73e5", - "order": 5, - "width": 5, - "height": 1, - "name": "Total imaged volume", - "label": "Total imaged volume", - "format": "{{msg.payload}}", - "layout": "col-center", - "x": 1200, - "y": 140, - "wires": [] - }, - { - "id": "99b11fe4.2795d", - "type": "function", - "z": "baa1e3d9.cb29d", - "name": "imaged volume calc", - "func": "camera = global.get(\"acq_camera\");\ncell = global.get(\"acq_celltype\");\nnb_frame = global.get(\"nb_frame\");\nprocess_pixel = global.get(\"process_pixel\");\n\nvar volume = 0\nif (camera == \"HQ Camera\"){\n volume = nb_frame * (process_pixel*4056*process_pixel*3040*cell/1000000000) / 1000;\n}\nelse if (camera == \"Camera v2.1\"){\n volume = nb_frame * (process_pixel*3280*process_pixel*2464*cell/1000000000) / 1000;\n}\nelse{\n msg.payload = \"The camera is not known to this system\";\n return msg;\n}\n\nglobal.set(\"acq_imaged_volume\", volume.toFixed(4))\n\nmsg.payload = volume.toFixed(2) + \" mL\"\nreturn msg;", - "outputs": 1, - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 960, - "y": 140, - "wires": [ - [ - "9bd72495.a8a098" - ] - ], - "info": "### Focusing\n##### focus.py `nb_step` `orientation`\n\n- `nb_step` : **integer** (from 1 to 100000) - number of step to perform by the stage (about 31um/step)\n- `orientation` : **string** - orientation of the focus either `up` or `down`\n\nExample:\n\n python3.7 $HOME/PlanktoScope/scripts/focus.py 650 up\n" - }, - { - "id": "8e16aa2f.e40398", - "type": "ui_text", - "z": "baa1e3d9.cb29d", - "group": "4322c187.e73e5", - "order": 7, - "width": 5, - "height": 1, - "name": "Total pumped volume", - "label": "Total pumped volume", - "format": "{{msg.payload}} mL", - "layout": "col-center", - "x": 1200, - "y": 300, - "wires": [] - }, - { - "id": "67091ac0.8f9f6c", - "type": "function", - "z": "baa1e3d9.cb29d", - "name": "acq_volume calc", - "func": "var imaging_pump_volume = global.get(\"imaging_pump_volume\");\nvar nb_frame = global.get(\"nb_frame\");\nvar acq_volume = 0\n\nacq_volume = (Number(nb_frame)*Number(imaging_pump_volume)).toFixed(2)\nglobal.set(\"acq_volume\", acq_volume)\n\nmsg.payload = acq_volume\nreturn msg;", - "outputs": 1, - "noerr": 0, - "initialize": "", - "finalize": "", - "x": 950, - "y": 300, - "wires": [ - [ - "8e16aa2f.e40398" - ] - ], - "info": "### Focusing\n##### focus.py `nb_step` `orientation`\n\n- `nb_step` : **integer** (from 1 to 100000) - number of step to perform by the stage (about 31um/step)\n- `orientation` : **string** - orientation of the focus either `up` or `down`\n\nExample:\n\n python3.7 $HOME/PlanktoScope/scripts/focus.py 650 up\n" - }, - { - "id": "2b9d6988.d84836", - "type": "switch", - "z": "baa1e3d9.cb29d", - "name": "", - "property": "payload", - "propertyType": "msg", - "rules": [ - { - "t": "hask", - "v": "status", - "vt": "str" - }, - { - "t": "hask", - "v": "camera_name", - "vt": "str" - } - ], - "checkall": "true", - "repair": false, - "outputs": 2, - "x": 650, - "y": 760, - "wires": [ - [ - "2b009bd7.c07004" - ], - [ - "3bbb756a.84190a" - ] - ] - }, - { - "id": "3bbb756a.84190a", - "type": "function", - "z": "baa1e3d9.cb29d", - "name": "set camera name", - "func": "global.set(\"acq_camera\", msg.payload.camera_name);\n\nmsg.payload = msg.payload.camera_name;\n\nreturn msg;", - "outputs": 1, - "noerr": 0, - "initialize": "", - "finalize": "", - "x": 810, - "y": 780, - "wires": [ - [ - "559a8085.1d6b9" - ] - ] - }, - { - "id": "559a8085.1d6b9", - "type": "link out", - "z": "baa1e3d9.cb29d", - "name": "Camera Name", - "links": [ - "30067f35.532f2", - "572a6daa.6004c4" - ], - "x": 965, - "y": 780, - "wires": [] - }, - { - "id": "49ea1123.ee1768", - "type": "ui_numeric", - "z": "baa1e3d9.cb29d", - "name": "sleep_before", - "label": "Delay to stabilize image (s)", - "tooltip": "Happens before every capture", - "group": "4322c187.e73e5", - "order": 4, - "width": 5, - "height": 1, - "wrap": false, - "passthru": true, - "topic": "sleep_before", - "topicType": "str", - "format": "{{value}}", - "min": "0.1", - "max": "5", - "step": "0.1", - "className": "", - "x": 670, - "y": 120, - "wires": [ - [ - "fb887036.12429" - ] - ] - }, - { - "id": "572a6daa.6004c4", - "type": "link in", - "z": "baa1e3d9.cb29d", - "name": "", - "links": [ - "559a8085.1d6b9" - ], - "x": 795, - "y": 140, - "wires": [ - [ - "99b11fe4.2795d" - ] - ] - }, - { - "id": "8032ea50.1b57f", - "type": "ui_template", - "z": "baa1e3d9.cb29d", - "group": "b5d61bc7.54fe48", - "name": "progress header", - "order": 1, - "width": 0, - "height": 0, - "format": "

Capture progress

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The segmentation is run recursively in all folders. So if you select a top level folder, the segmentation will be run in all subfolders.\n
Also, you will be able to chose wether for force the segmentation for folders in which it has run already.
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\n Latest object segmented:
\n \"If\n
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\n\n
", - "storeOutMessages": true, - "fwdInMessages": true, - "resendOnRefresh": false, - "templateScope": "local", - "className": "", - "x": 400, - "y": 100, - "wires": [ - [] - ] - }, - { - "id": "4f02c726.de69b8", - "type": "ui_button", - "z": "9daf9e2b.019fc", - "name": "", - "group": "a7d64879.38298", - "order": 4, - "width": 6, - "height": 1, - "passthru": false, - "label": "Reboot", - "tooltip": "", - "color": "", - "bgcolor": "#AD1625", - "className": "", - "icon": "fa-repeat fa-2x", - "payload": "reboot", - "payloadType": "str", - "topic": "reboot", - "topicType": "str", - "x": 160, - "y": 240, - "wires": [ - [ - "4af9112d.87767" - ] - ] - }, - { - "id": "611a8b1c.a829b4", - "type": "exec", - "z": "9daf9e2b.019fc", - "command": "sudo", - "addpay": "payload", - "append": "now", - "useSpawn": "false", - "timer": "2", - "winHide": false, - "oldrc": false, - "name": "sudo cmd now", - "x": 480, - "y": 280, - "wires": [ - [], - [], - [] - ] - }, - { - "id": "bc76c4d6.a7ad28", - "type": "ui_button", - "z": "9daf9e2b.019fc", - "name": "", - "group": "a7d64879.38298", - "order": 5, - "width": 6, - "height": 1, - "passthru": false, - "label": "Shutdown", - "tooltip": "", - "color": "", - "bgcolor": "#AD1625", - "className": "", - "icon": "fa-power-off fa-2x", - "payload": "shutdown", - "payloadType": "str", - "topic": "shutdown", - "topicType": "str", - "x": 160, - "y": 320, - "wires": [ - [ - "4af9112d.87767" - ] - ] - }, - { - "id": "4af9112d.87767", - "type": "python3-function", - "z": "9daf9e2b.019fc", - "name": "action", - "func": "#!/usr/bin/python3\nimport smbus2 as smbus\n\nbus = smbus.SMBus(1)\n#turn off LED\nbus.write_byte_data(0x0d, 0x07, 0x00)\n#turn off Fan\nbus.write_byte_data(0x0d, 0x08, 0x00)\n\n#msg[\"payload\"] = str(msg[\"topic\"])+' now'\nreturn msg", - "outputs": 1, - "x": 330, - "y": 280, - "wires": [ - [ - "611a8b1c.a829b4" - ] - ] - }, - { - "id": "466eb611.4da048", - "type": "ui_button", - "z": "9daf9e2b.019fc", - "name": "", - "group": "a7d64879.38298", - "order": 2, - "width": 6, - "height": 1, - "passthru": true, - "label": "Restart Hardware Controller", - "tooltip": "", - "color": "", - "bgcolor": "#AD1625", - "className": "", - "icon": "fa-refresh fa-2x", - "payload": "Restarting hardware controller...", - "payloadType": "str", - "topic": "", - "topicType": "str", - "x": 460, - "y": 420, - "wires": [ - [ - "bd5cceef.b17ad", - "414353cde6a62346" - ] - ] - }, - { - "id": "bd5cceef.b17ad", - "type": "exec", - "z": "9daf9e2b.019fc", - "command": "sudo systemctl restart planktoscope-org.device-backend.controller.service", - "addpay": false, - "append": "", - "useSpawn": "false", - "timer": "", - "winHide": false, - "oldrc": false, - "name": "Restart hardware controller", - "x": 800, - "y": 420, - "wires": [ - [], - [], - [] - ] - }, - { - "id": "43cf8ff7.75231", - "type": "rpi-gpio out", - "z": "9daf9e2b.019fc", - "name": "Pump Enable", - "pin": "4", - "set": true, - "level": "1", - "freq": "", - "out": "out", - "bcm": true, - "x": 420, - "y": 80, - "wires": [] - }, - { - "id": "4bca8a25.15be3c", - "type": "rpi-gpio out", - "z": "9daf9e2b.019fc", - "name": "Focus Enable", - "pin": "12", - "set": true, - "level": "1", - "freq": "", - "out": "out", - "bcm": true, - "x": 420, - "y": 120, - "wires": [] - }, - { - "id": "50f9b5b.a84bccc", - "type": "inject", - "z": "9daf9e2b.019fc", - "name": "Default: ON", - "props": [ - { - "p": "payload" - } - ], - "repeat": "", - "crontab": "", - "once": true, - "onceDelay": "0.01", - "topic": "", - "payload": "true", - "payloadType": "bool", - "x": 150, - "y": 100, - "wires": [ - [ - "43cf8ff7.75231", - "4bca8a25.15be3c", - "6db0fcf5.f0effc", - "5fc4ede4.72516c" - ] - ] - }, - { - "id": "45a7b5aa.2ed20c", - "type": "link in", - "z": "9daf9e2b.019fc", - "name": "Restart Hardware Controller", - "links": [ - "e41870d7.300eb8", - "e4ead350b3d07578" - ], - "x": 195, - "y": 420, - "wires": [ - [ - "466eb611.4da048" - ] - ] - }, - { - "id": "b81b990a.d4dca", - "type": "link in", - "z": "9daf9e2b.019fc", - "name": "Shutdown", - "links": [ - "e08cfcb8.2a67e8" - ], - "x": 195, - "y": 280, - "wires": [ - [ - "4af9112d.87767" - ] - ] - }, - { - "id": "5fc4ede4.72516c", - "type": "rpi-gpio out", - "z": "9daf9e2b.019fc", - "name": "HAT Pump Enable", - "pin": "23", - "set": true, - "level": "1", - "freq": "", - "out": "out", - "bcm": true, - "x": 430, - "y": 40, - "wires": [] - }, - { - "id": "6db0fcf5.f0effc", - "type": "rpi-gpio out", - "z": "9daf9e2b.019fc", - "name": "HAT Focus Enable", - "pin": "5", - "set": true, - "level": "1", - "freq": "", - "out": "out", - "bcm": true, - "x": 430, - "y": 160, - "wires": [] - }, - { - "id": "38c05fcb891c82bf", - "type": "exec", - "z": "9daf9e2b.019fc", - "command": "docker restart apps_ps_backend_proc-segmenter-server-1", - "addpay": false, - "append": "", - "useSpawn": "false", - "timer": "", - "winHide": false, - "oldrc": false, - "name": "Restart segmenter", - "x": 770, - "y": 500, - "wires": [ - [], - [], - [] - ] - }, - { - "id": "631b8626185addfc", - "type": "ui_button", - "z": "9daf9e2b.019fc", - "name": "", - "group": "a7d64879.38298", - "order": 3, - "width": 6, - "height": 1, - "passthru": true, - "label": "Restart Segmenter", - "tooltip": "", - "color": "", - "bgcolor": "#AD1625", - "className": "", - "icon": "fa-refresh fa-2x", - "payload": "Restarting segmenter...", - "payloadType": "str", - "topic": "", - "topicType": "str", - "x": 430, - "y": 500, - "wires": [ - [ - "38c05fcb891c82bf", - "e036d07cf78fde85" - ] - ] - }, - { - "id": "cec5bd6f962f6903", - "type": "ui_template", - "z": "9daf9e2b.019fc", - "group": "a7d64879.38298", - "name": "Logs", - "order": 1, - "width": 0, - "height": 0, - "format": "

\n The PlanktoScope software application consists of three components: a Node-RED dashboard which provides the user interface you're using; a Hardware Controller\n which executes commands sent from the Node-RED dashboard for hardware control and image acquisition; and a Segmenter which processes an acquired dataset of\n images and isolates objects from those images. Each component has its own independent log of messages, managed separately from the logs for the other components.\n

\n

\n All three components have live-updating logs which you can monitor. Additionally, the Hardware Controller and the Segmenter also save all of their log messages\n to files which you can browse and download. Those software components create a new log file each time they start, and the name of the log file includes the time\n in the PlanktoScope's clock when the software component started. However, if your PlanktoScope's clock is usually wrong, it makes the log files difficult to navigate.\n This will be fixed in a future version of the software.\n

\n

\n If you need to share your logs with other people (e.g. on Slack or GitHub), you should open the \"Downloadable Logs\" links, and then you can select one file or multiple\n log files for downloading as a zip archive.\n

\n", - "storeOutMessages": true, - "fwdInMessages": true, - "resendOnRefresh": true, - "templateScope": "local", - "className": "", - "x": 650, - "y": 180, - "wires": [ - [] - ] - }, - { - "id": "414353cde6a62346", - "type": "ui_toast", - "z": "9daf9e2b.019fc", - "position": "top right", - "displayTime": "3", - "highlight": "", - "sendall": true, - "outputs": 0, - "ok": "OK", - "cancel": "", - "raw": false, - "className": "", - "topic": "", - "name": "", - "x": 770, - "y": 380, - "wires": [] - }, - { - "id": "e036d07cf78fde85", - "type": "ui_toast", - "z": "9daf9e2b.019fc", - "position": "top right", - "displayTime": "3", - "highlight": "", - "sendall": true, - "outputs": 0, - "ok": "OK", - "cancel": "", - "raw": false, - "className": "", - "topic": "", - "name": "", - "x": 770, - "y": 460, - "wires": [] - }, - { - "id": "ddcbbfa5.cd158", - "type": "exec", - "z": "1371dec5.76e671", - "command": "vcgencmd measure_temp | tr -d \"temp=\" | tr -d \"'C\" | tr -d \"\\n\"", - "addpay": false, - "append": "", - "useSpawn": "", - "timer": "", - "name": "RPi Temp.", - "x": 330, - "y": 40, - "wires": [ - [ - "bc503fa5.f46dd" - ], - [], - [] - ] - }, - { - "id": "3910d662.fa1f7a", - "type": "exec", - "z": "1371dec5.76e671", - "command": "df -h | grep /dev/root | awk -F ' ' '{print $5}' | tr -d % | tr \"\\n$\" \"\\ \" | sed 's/,/./' | tr -d \" \"", - "addpay": false, - "append": "", - "useSpawn": "", - "timer": "", - "name": "Disk Usage", - "x": 330, - "y": 120, - "wires": [ - [ - "eaf74a43.fa27d" - ], - [], - [] - ] - }, - { - "id": "1cd5b4c0.46af9b", - "type": "inject", - "z": "1371dec5.76e671", - "name": "update: 5s", - "props": [ - { - "p": "payload" - }, - { - "p": "topic", - "vt": "str" - } - ], - "repeat": "5", - "crontab": "", - "once": false, - "onceDelay": "", - "topic": "", - "payload": "", - "payloadType": "date", - "x": 110, + { + "id": "eaae323a.31b3", + "type": "tab", + "label": "Home", + "disabled": false, + "info": "" + }, + { + "id": "b771c342.49603", + "type": "tab", + "label": "Sample", + "disabled": false, + "info": "" + }, + { + "id": "bccd1f23.87219", + "type": "tab", + "label": "Optic Configuration", + "disabled": false, + "info": "" + }, + { + "id": "baa1e3d9.cb29d", + "type": "tab", + "label": "Fluidic Acquisition", + "disabled": false, + "info": "" + }, + { + "id": "cb95299c.2817c8", + "type": "tab", + "label": "Segmentation", + "disabled": false, + "info": "" + }, + { + "id": "c1660bc.e7ff7f8", + "type": "tab", + "label": "Gallery", + "disabled": false, + "info": "" + }, + { + "id": "9daf9e2b.019fc", + "type": "tab", + "label": "Administration", + "disabled": false, + "info": "" + }, + { + "id": "1371dec5.76e671", + "type": "tab", + "label": "System Monitoring", + "disabled": false, + "info": "" + }, + { + "id": "9a22e67a.378818", + "type": "tab", + "label": "MQTT Receive", + "disabled": false, + "info": "" + }, + { + "id": "1eaf21c8.f7a21e", + "type": "tab", + "label": "Hardware Settings", + "disabled": false, + "info": "" + }, + { + "id": "1c24ad9c.bebec2", + "type": "subflow", + "name": "Config", + "info": "An input to this subflow will get the configuration to be saved to disk.\n\nOn startup, this node outputs the loaded configuration", + "category": "", + "in": [ + { + "x": 220, "y": 160, "wires": [ - [ - "3910d662.fa1f7a", - "ddcbbfa5.cd158", - "23a84a3856fb68bd", - "4ed64bd91fa9fbdf", - "ed5f2d963d85478b" - ] - ] - }, - { - "id": "2549f778.4eb828", - "type": "python3-function", - "z": "1371dec5.76e671", - "name": "fan control", - "func": "import smbus2 as smbus\n\nstate = msg[\"payload\"]\nbus = smbus.SMBus(1)\n\nDEVICE_ADDRESS = 0x0d\n# command happens twice, for reasons\nif state == \"off\":\n with smbus.SMBus(1) as bus:\n bus.write_byte_data(DEVICE_ADDRESS, 0x08, 0x00)\n bus.write_byte_data(DEVICE_ADDRESS, 0x08, 0x00)\n return msg\nif state == \"on\":\n with smbus.SMBus(1) as bus:\n bus.write_byte_data(DEVICE_ADDRESS, 0x08, 0x01)\n bus.write_byte_data(DEVICE_ADDRESS, 0x08, 0x01)\n return msg\n", - "outputs": 1, - "x": 1150, - "y": 40, - "wires": [ - [ - "e640ebb5c397f424" - ] - ] - }, - { - "id": "b7ab1ada.1f4158", - "type": "exec", - "z": "1371dec5.76e671", - "command": "i2cdetect -y 1", - "addpay": false, - "append": "", - "useSpawn": "false", - "timer": "1", - "winHide": false, - "oldrc": false, - "name": "i2c update", - "x": 1440, - "y": 40, - "wires": [ - [], - [], - [] - ] - }, - { - "id": "bc503fa5.f46dd", - "type": "switch", - "z": "1371dec5.76e671", - "name": "", - "property": "payload", - "propertyType": "msg", - "rules": [ - { - "t": "gt", - "v": "40", - "vt": "num" - }, - { - "t": "lte", - "v": "35", - "vt": "num" - } - ], - "checkall": "true", - "repair": false, - "outputs": 2, - "x": 570, - "y": 40, - "wires": [ - [ - "a25d6486.e1ce28" - ], - [ - "5d4f3e71.1bad4" - ] + { + "id": "3ad9835.08c937c" + } ] - }, - { - "id": "5d4f3e71.1bad4", - "type": "change", - "z": "1371dec5.76e671", - "name": "Set OFF", - "rules": [ - { - "t": "set", - "p": "payload", - "pt": "msg", - "to": "off", - "tot": "str" - } - ], - "action": "", - "property": "", - "from": "", - "to": "", - "reg": false, - "x": 720, + } + ], + "out": [ + { + "x": 1040, "y": 60, "wires": [ - [ - "7fb13a4a53b612a0" - ] - ] - }, - { - "id": "a25d6486.e1ce28", - "type": "change", - "z": "1371dec5.76e671", - "name": "Set ON", - "rules": [ - { - "t": "set", - "p": "payload", - "pt": "msg", - "to": "on", - "tot": "str" - } - ], - "action": "", - "property": "", - "from": "", - "to": "", - "reg": false, - "x": 720, - "y": 20, - "wires": [ - [ - "7fb13a4a53b612a0" - ] - ] - }, - { - "id": "569154a.b53182c", - "type": "inject", - "z": "1371dec5.76e671", - "name": "once", - "props": [ - { - "p": "payload" - } - ], - "repeat": "", - "crontab": "", - "once": true, - "onceDelay": "", - "topic": "", - "payload": "start", - "payloadType": "str", - "x": 170, - "y": 680, - "wires": [ - [ - "ccb5172d10c1ccaf" - ] - ] - }, - { - "id": "4828d2f4.7c712c", - "type": "function", - "z": "1371dec5.76e671", - "name": "set global", - "func": "global.set(\"acq_instrument_id\",msg.payload);\n", - "outputs": 1, - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 580, - "y": 700, - "wires": [ - [] - ] - }, - { - "id": "e2f39a35.f57298", - "type": "subflow:1c24ad9c.bebec2", - "z": "1371dec5.76e671", - "name": "", - "env": [], - "x": 170, - "y": 620, - "wires": [ - [ - "950b773ad4c0fdfe" - ] - ] - }, - { - "id": "3e64877a.9684b", - "type": "function", - "z": "1371dec5.76e671", - "name": "set global", - "func": "global.set(\"acq_software\", \"PlanktoScope \" + msg.payload);\n", - "outputs": 1, - "timeout": "", - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 820, - "y": 500, - "wires": [ - [] - ] - }, - { - "id": "bdc6718a.dd5d48", - "type": "ui_text", - "z": "1371dec5.76e671", - "group": "ce9e278.781eed8", - "order": 2, - "width": 0, - "height": 0, - "name": "", - "label": "Instrument Type", - "format": "{{msg.payload}}", - "layout": "row-spread", - "className": "", - "style": false, - "font": "", - "fontSize": "", - "color": "#000000", - "x": 600, - "y": 620, - "wires": [] - }, - { - "id": "a400a97e.e333a8", - "type": "ui_text", - "z": "1371dec5.76e671", - "group": "ce9e278.781eed8", - "order": 1, - "width": 0, - "height": 0, - "name": "", - "label": "Instrument Name", - "format": "{{msg.payload}}", - "layout": "row-spread", - "className": "", - "style": false, - "font": "", - "fontSize": "", - "color": "#000000", - "x": 610, - "y": 660, - "wires": [] - }, - { - "id": "8343fa69.49339", - "type": "ui_text", - "z": "1371dec5.76e671", - "group": "ce9e278.781eed8", - "order": 3, - "width": 0, - "height": 0, - "name": "", - "label": "Software Version", - "format": "{{msg.payload}}", - "layout": "row-spread", - "className": "", - "style": false, - "font": "", - "fontSize": "", - "color": "#000000", - "x": 850, - "y": 540, - "wires": [] - }, - { - "id": "f783aefd.c3bfd8", - "type": "ui_text", - "z": "1371dec5.76e671", - "group": "ce9e278.781eed8", - "order": 4, - "width": 0, - "height": 0, - "name": "", - "label": "Camera Name", - "format": "{{msg.payload}}", - "layout": "row-spread", - "x": 600, - "y": 740, - "wires": [] - }, - { - "id": "30067f35.532f2", - "type": "link in", - "z": "1371dec5.76e671", - "name": "Camera Name", - "links": [ - "559a8085.1d6b9" - ], - "x": 205, - "y": 740, - "wires": [ - [ - "f783aefd.c3bfd8" - ] - ] - }, - { - "id": "11b51f8f.acd308", - "type": "python3-function", - "z": "1371dec5.76e671", - "d": true, - "name": "fan temperature", - "func": "import smbus\nbus = smbus.SMBus(1)\n\naddr = 0x0d\nfan_reg = 0x08\n\ntemp = float( msg[\"payload\"])\n\n# 0x01 full speed, 0x02: 20% speed, ..., 0x09: 90% speed\n\nif temp < 38:\n bus.write_byte_data(addr, fan_reg, 0x00)\nelif temp < 43:\n bus.write_byte_data(addr, fan_reg, 0x02)\nelif temp < 46:\n bus.write_byte_data(addr, fan_reg, 0x04)\nelif temp < 48:\n bus.write_byte_data(addr, fan_reg, 0x06)\nelif temp < 52:\n bus.write_byte_data(addr, fan_reg, 0x08)\nelse:\n bus.write_byte_data(addr, fan_reg, 0x01)\n\nreturn msg", - "outputs": 1, - "x": 1440, - "y": 120, - "wires": [ - [] - ] - }, - { - "id": "eaf74a43.fa27d", - "type": "switch", - "z": "1371dec5.76e671", - "name": "if disk > 90%", - "property": "payload", - "propertyType": "msg", - "rules": [ - { - "t": "gte", - "v": "90", - "vt": "num" - } - ], - "checkall": "true", - "repair": false, - "outputs": 1, - "x": 590, - "y": 120, - "wires": [ - [ - "6d09f428.930bcc" - ] - ] - }, - { - "id": "46d5e78b.15f998", - "type": "ui_toast", - "z": "1371dec5.76e671", - "position": "dialog", - "displayTime": "10", - "highlight": "", - "sendall": true, - "outputs": 1, - "ok": "OK", - "cancel": "", - "raw": false, - "className": "", - "topic": "", - "name": "", - "x": 1090, - "y": 120, - "wires": [ - [] - ] - }, - { - "id": "24df077a.cb252", - "type": "change", - "z": "1371dec5.76e671", - "name": "full disk msg", - "rules": [ - { - "t": "set", - "p": "payload", - "pt": "msg", - "to": "\"Your drive has reached 90% capacity, you should do a backup to an external drive and a purge.\"", - "tot": "str" - } - ], - "action": "", - "property": "", - "from": "", - "to": "", - "reg": false, - "x": 930, - "y": 120, - "wires": [ - [ - "46d5e78b.15f998" - ] - ] - }, - { - "id": "6d09f428.930bcc", - "type": "delay", - "z": "1371dec5.76e671", - "name": "", - "pauseType": "rate", - "timeout": "5", - "timeoutUnits": "seconds", - "rate": "1", - "nbRateUnits": "5", - "rateUnits": "minute", - "randomFirst": "1", - "randomLast": "5", - "randomUnits": "seconds", - "drop": true, - "allowrate": false, - "outputs": 1, - "x": 760, - "y": 120, - "wires": [ - [ - "24df077a.cb252" - ] - ] - }, - { - "id": "e640ebb5c397f424", - "type": "delay", - "z": "1371dec5.76e671", - "name": "", - "pauseType": "delay", - "timeout": "1", - "timeoutUnits": "seconds", - "rate": "1", - "nbRateUnits": "1", - "rateUnits": "second", - "randomFirst": "1", - "randomLast": "5", - "randomUnits": "seconds", - "drop": false, - "allowrate": false, - "outputs": 1, - "x": 1300, + { + "id": "ad541674.4791c8", + "port": 0 + } + ] + } + ], + "env": [], + "color": "#DDAA99" + }, + { + "id": "4ed26b8b.253504", + "type": "subflow", + "name": "Save hardware config", + "info": "", + "category": "", + "in": [ + { + "x": 40, "y": 40, "wires": [ - [ - "b7ab1ada.1f4158" - ] - ] - }, - { - "id": "7fb13a4a53b612a0", - "type": "rbe", - "z": "1371dec5.76e671", - "name": "", - "func": "rbe", - "gap": "", - "start": "", - "inout": "out", - "septopics": true, - "property": "payload", - "topi": "topic", - "x": 1010, + { + "id": "53d163be.47cf24" + } + ] + } + ], + "out": [], + "env": [], + "meta": {}, + "color": "#DDAA99" + }, + { + "id": "e6665421f66ea4c8", + "type": "subflow", + "name": "Load hardware config", + "info": "", + "category": "", + "in": [ + { + "x": 40, "y": 40, "wires": [ - [ - "2549f778.4eb828" - ] - ] - }, - { - "id": "ccb5172d10c1ccaf", - "type": "file in", - "z": "1371dec5.76e671", - "name": "Get machine name", - "filename": "/run/machine-name", - "filenameType": "str", - "format": "utf8", - "chunk": false, - "sendError": false, - "encoding": "none", - "allProps": false, - "x": 350, - "y": 680, - "wires": [ - [ - "a400a97e.e333a8", - "4828d2f4.7c712c" - ] - ] - }, - { - "id": "950b773ad4c0fdfe", - "type": "change", - "z": "1371dec5.76e671", - "name": "Get acq_instrument", - "rules": [ - { - "t": "set", - "p": "payload", - "pt": "msg", - "to": "payload.acq_instrument", - "tot": "msg" - }, - { - "t": "set", - "p": "topic", - "pt": "msg", - "to": "acq_instrument", - "tot": "str" - } - ], - "action": "", - "property": "", - "from": "", - "to": "", - "reg": false, - "x": 350, - "y": 620, - "wires": [ - [ - "bdc6718a.dd5d48" - ] - ] - }, - { - "id": "24de7407445d2087", - "type": "inject", - "z": "1371dec5.76e671", - "name": "once", - "props": [ - { - "p": "payload" - } - ], - "repeat": "", - "crontab": "", - "once": true, - "onceDelay": "", - "topic": "", - "payload": "start", - "payloadType": "str", - "x": 90, - "y": 520, - "wires": [ - [ - "e4f9ed2b337c2fa6" - ] - ] - }, - { - "id": "e4f9ed2b337c2fa6", - "type": "file in", - "z": "1371dec5.76e671", - "name": "Versioning File", - "filename": "/usr/share/planktoscope/installer-versioning.yml", - "filenameType": "str", - "format": "utf8", - "chunk": false, - "sendError": false, - "encoding": "none", - "allProps": false, - "x": 240, - "y": 520, - "wires": [ - [ - "db79aae8a7fe3512" - ] - ] - }, - { - "id": "db79aae8a7fe3512", - "type": "yaml", - "z": "1371dec5.76e671", - "property": "payload", - "name": "", - "x": 390, - "y": 520, - "wires": [ - [ - "04c313e8d9aac122", - "ef1970121e57c5e8", - "574361abfe75b3b3" - ] - ] - }, - { - "id": "04c313e8d9aac122", - "type": "change", - "z": "1371dec5.76e671", - "name": "Get repo", - "rules": [ - { - "t": "set", - "p": "payload", - "pt": "msg", - "to": "payload.repo", - "tot": "msg" - } - ], - "action": "", - "property": "", - "from": "", - "to": "", - "reg": false, - "x": 580, - "y": 480, - "wires": [ - [ - "57b3b083a2455e09" - ] - ] - }, - { - "id": "ef1970121e57c5e8", - "type": "change", - "z": "1371dec5.76e671", - "name": "Get version", - "rules": [ - { - "t": "set", - "p": "payload", - "pt": "msg", - "to": "payload.version", - "tot": "msg" - } - ], - "action": "", - "property": "", - "from": "", - "to": "", - "reg": false, - "x": 590, - "y": 520, - "wires": [ - [ - "3e64877a.9684b", - "8343fa69.49339" - ] - ] - }, - { - "id": "57b3b083a2455e09", - "type": "function", - "z": "1371dec5.76e671", - "name": "set global", - "func": "global.set(\"process_source\", msg.payload);\n", - "outputs": 1, - "timeout": "", - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 820, - "y": 460, - "wires": [ - [] - ] - }, - { - "id": "574361abfe75b3b3", - "type": "change", - "z": "1371dec5.76e671", - "name": "Get commit", - "rules": [ - { - "t": "set", - "p": "payload", - "pt": "msg", - "to": "payload.commit", - "tot": "msg" - } - ], - "action": "", - "property": "", - "from": "", - "to": "", - "reg": false, - "x": 590, - "y": 560, - "wires": [ - [ - "016d1d2a2f19f1a6" - ] - ] - }, - { - "id": "016d1d2a2f19f1a6", - "type": "function", - "z": "1371dec5.76e671", - "name": "set global", - "func": "global.set(\"process_commit\", msg.payload);\n", - "outputs": 1, - "timeout": "", - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 820, - "y": 580, - "wires": [ - [] - ] - }, - { - "id": "4ed64bd91fa9fbdf", - "type": "ui_template", - "z": "1371dec5.76e671", - "group": "3da7da8f.179606", - "name": "Metrics panel", - "order": 1, - "width": "0", - "height": "0", - "format": "
\n

\n The instrument's system time is different from your web browser's time by {{drift}}.\n As a result, timestamps in your datasets will be incorrect.\n Additionally, system metrics will not be recorded or shown correctly.\n Additionally, you will see incorrectly-aligned graphs in the metrics below.\n

\n

Please change the instrument's system time or your web browser's time to accurate values.

\n

\n \n

\n
\n\n
\n

Loading system metrics, please wait...

\n
\n\n
\n \n
\n\n\n", - "storeOutMessages": true, - "fwdInMessages": true, - "resendOnRefresh": false, - "templateScope": "local", - "className": "", - "x": 330, - "y": 280, - "wires": [ - [] - ] - }, - { - "id": "38bad1e220cd5d87", - "type": "ui_text", - "z": "1371dec5.76e671", - "group": "ce9e278.781eed8", - "order": 5, - "width": 0, - "height": 0, - "name": "", - "label": "System Time", - "format": "{{msg.payload}}", - "layout": "row-spread", - "className": "", - "style": false, - "font": "", - "fontSize": 16, - "color": "#000000", - "x": 590, - "y": 240, - "wires": [] - }, - { - "id": "ed5f2d963d85478b", - "type": "function", - "z": "1371dec5.76e671", - "name": "Get system time", - "func": "var date = new Date();\ndate.setSeconds(0, 0);\nmsg.payload = (\n date.toISOString().replace('T', ' ').replace(/:\\d+\\.\\d+Z/,' UTC')\n);\nreturn msg", - "outputs": 1, - "timeout": 0, - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 340, - "y": 240, - "wires": [ - [ - "38bad1e220cd5d87" - ] - ] - }, - { - "id": "23a84a3856fb68bd", - "type": "ui_template", - "z": "1371dec5.76e671", - "group": "ce9e278.781eed8", - "name": "Browser time", - "order": 6, - "width": "6", - "height": "1", - "format": "
\n

Browser Time

\n

{{time}}

\n
\n\n", - "storeOutMessages": true, - "fwdInMessages": true, - "resendOnRefresh": false, - "templateScope": "local", - "className": "", - "x": 330, - "y": 200, - "wires": [ - [] - ] - }, - { - "id": "19a45f972be2b0f1", - "type": "function", - "z": "1371dec5.76e671", - "name": "Get system time", - "func": "var date = new Date(msg.payload.timestamp);\nmsg.payload = (\n date.toISOString().replace('T', ' ').replace(/:\\d+\\.\\d+Z/,' UTC')\n);\nreturn msg", - "outputs": 1, - "timeout": 0, - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 340, - "y": 340, - "wires": [ - [ - "ee2c5e7c29eb4760" - ] - ] - }, - { - "id": "8ba3e2774987fd58", - "type": "http in", - "z": "1371dec5.76e671", - "name": "POST /api/system-time", - "url": "/api/system-time", - "method": "post", - "upload": false, - "swaggerDoc": "", - "x": 120, - "y": 360, - "wires": [ - [ - "19a45f972be2b0f1", - "07bbdca8d6153210", - "595df18543c8328e" - ] - ] - }, - { - "id": "ee2c5e7c29eb4760", - "type": "ui_toast", - "z": "1371dec5.76e671", - "position": "top right", - "displayTime": "3", - "highlight": "", - "sendall": true, - "outputs": 0, - "ok": "OK", - "cancel": "", - "raw": false, - "className": "", - "topic": "Setting system time", - "name": "", - "x": 610, - "y": 340, - "wires": [] - }, - { - "id": "07bbdca8d6153210", - "type": "function", - "z": "1371dec5.76e671", - "name": "Prepare timestamp", - "func": "msg.payload = ('@' + msg.payload.timestamp).slice(0, -3);\nreturn msg;", - "outputs": 1, - "timeout": 0, - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 350, - "y": 380, - "wires": [ - [ - "7558e8f302d5b944" - ] + { + "id": "48ceeda454438cb7" + } ] - }, - { - "id": "7558e8f302d5b944", - "type": "exec", - "z": "1371dec5.76e671", - "command": "sudo date -s", - "addpay": "payload", - "append": "", - "useSpawn": "", - "timer": "", - "winHide": false, - "name": "Set system time", - "x": 600, - "y": 380, - "wires": [ - [], - [], - [] - ] - }, - { - "id": "c8be8dad272e1fa5", - 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\n

\n If you are not sure, you probably should not be touching anything here!\n

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+ "tab": "c9194f02.9d5e9", + "order": 4, + "disp": true, + "width": "10", + "collapse": false + }, + { + "id": "8dc3722c.06efa8", + "type": "mqtt-broker", + "name": "", + "broker": "0.0.0.0", + "port": "1883", + "clientid": "Client_node", + "autoConnect": true, + "usetls": false, + "compatmode": false, + "protocolVersion": "4", + "keepalive": "60", + "cleansession": true, + "birthTopic": "", + "birthQos": "0", + "birthPayload": "", + "birthMsg": {}, + "closeTopic": "", + "closeQos": "0", + "closePayload": "", + "closeMsg": {}, + "willTopic": "", + "willQos": "0", + "willPayload": "", + "willMsg": {}, + "userProps": "", + "sessionExpiry": "" + }, + { + "id": "abeb6dad.635a2", + "type": "ui_group", + "name": "Control", + "tab": "8d16beb8.9b3fb", + "order": 1, + "disp": true, + "width": 10, + "collapse": false + }, + { + "id": "cf5d9f0e.d57e7", + "type": "ui_group", + "name": "Net Metadata", + "tab": "737ec584.2eea2c", + "order": 4, + "disp": false, + "width": "10", + "collapse": false + }, + { + "id": "ce9e278.781eed8", + "type": "ui_group", + "name": "Information", + "tab": "d9cd733b.ab73d", + "order": 5, + "disp": true, + "width": 6, + "collapse": false + }, + { + "id": "70de8209.68416c", + "type": "ui_group", + "name": "Status", + "tab": "c9194f02.9d5e9", + "order": 5, + "disp": true, + "width": 10, + "collapse": false + }, + { + "id": "46be9c86.dea684", + "type": "ui_group", + "name": "Status", + "tab": "8d16beb8.9b3fb", + "order": 2, + "disp": true, + "width": 10, + "collapse": false + }, + { + "id": "8c38a81e.9897a8", + "type": "ui_group", + "name": "Camera Settings", + "tab": "181bb236.1e94be", + "order": 3, + "disp": true, + "width": 6, + "collapse": false + }, + { + "id": "2489e51c.eed77a", + "type": "ui_tab", + "name": "Administration", + "icon": "dashboard", + "order": 9, + "disabled": false, + "hidden": false + }, + { + "id": "b0fb559a.6966a8", + "type": "ui_tab", + "name": "Hardware Settings", + "icon": "fa-cogs", + "disabled": false, + "hidden": false + }, + { + "id": "6be36295.0ab324", + "type": "ui_group", + "name": "Settings", + "tab": "b0fb559a.6966a8", + "order": 1, + "disp": false, + "width": "8", + "collapse": false, + "className": "" + }, + { + "id": "fc5e4e6f.5b1c8", + "type": "ui_group", + "name": "GPS Status", + "tab": "737ec584.2eea2c", + "order": 6, + "disp": true, + "width": 10, + "collapse": false + }, + { + "id": "f3ca28ef.4df0a8", + "type": "ui_group", + "name": "Shutdown", + "tab": "3a6bb13f.c9703e", + "order": 7, + "disp": true, + "width": 4, + "collapse": false + }, + { + "id": "3dfd8a69.69ed56", + "type": "ui_spacer", + "name": "spacer", + "group": "3e1ba03d.f01d8", + "order": 5, + "width": 10, + "height": 1 + }, + { + "id": "72a9216.2ff48e", + "type": "ui_spacer", + "name": "spacer", + "group": "4322c187.e73e5", + "order": 8, + "width": 10, + "height": 1 + }, + { + "id": "1b664927.c91d1f", + "type": "ui_spacer", + "name": "spacer", + "group": "b5d61bc7.54fe48", + "order": 2, + "width": 2, + "height": 1 + }, + { + "id": "1a663b6a.ab5805", + "type": "ui_spacer", + "name": "spacer", + "group": "b5d61bc7.54fe48", + "order": 4, + "width": 2, + "height": 1 + }, + { + "id": "8eeed8d8.ad9098", + "type": "ui_spacer", + "name": "spacer", + "group": "b5d61bc7.54fe48", + "order": 5, + "width": 2, + "height": 1 + }, + { + "id": "be1c5ce7.004e", + "type": "ui_spacer", + "name": "spacer", + "group": "b5d61bc7.54fe48", + "order": 6, + "width": 2, + "height": 1 + }, + { + "id": "c2fe38e9.555e3", + "type": "ui_spacer", + "name": "spacer", + "group": "b5d61bc7.54fe48", + "order": 7, + "width": 2, + "height": 1 + }, + { + "id": "89bd18b7.c779a8", + "type": "ui_spacer", + "name": "spacer", + "group": "b5d61bc7.54fe48", + "order": 8, + "width": 2, + "height": 1 + }, + { + "id": "3cbbfa5d.efa636", + "type": "ui_spacer", + "name": "spacer", + "group": "b7919ae2.c01788", + "order": 2, + "width": 5, + "height": 1 + }, + { + "id": "97148e8d8e298f1a", + "type": "ui_spacer", + "z": "cb95299c.2817c8", + "name": "spacer", + "group": "abeb6dad.635a2", + "order": 7, + "width": 10, + "height": 1 + }, + { + "id": "3b2eccc574e6a9ae", + "type": "ui_spacer", + "z": "cb95299c.2817c8", + "name": "spacer", + "group": "abeb6dad.635a2", + "order": 11, + "width": 1, + "height": 1 + }, + { + "id": "bbd6431d97c86f97", + "type": "ui_spacer", + "z": "cb95299c.2817c8", + "name": "spacer", + "group": "46be9c86.dea684", + "order": 4, + "width": 3, + "height": 1 + }, + { + "id": "5f98f5f140f0ecde", + "type": "ui_spacer", + "z": "cb95299c.2817c8", + "name": "spacer", + "group": "46be9c86.dea684", + "order": 6, + "width": 3, + "height": 1 + }, + { + "id": "7bc0a4c416e4545c", + "type": "ui_group", + "name": "Culture Date and Time", + "tab": "737ec584.2eea2c", + "order": 2, + "disp": true, + "width": "10", + "collapse": false, + "className": "" + }, + { + "id": "6c31ad948a9d62fd", + "type": "ui_spacer", + "name": "spacer", + "group": "4248342d.e55fac", + "order": 2, + "width": 1, + "height": 1 + }, + { + "id": "833bc5bb.217ba8", + "type": "ui_group", + "name": "Preview", + "tab": "181bb236.1e94be", + "order": 1, + "disp": true, + "width": 18, + "collapse": false + }, + { + "id": "a7d64879.38298", + "type": "ui_group", + "name": "Logs", + "tab": "2489e51c.eed77a", + "order": 1, + "disp": true, + "width": "12", + "collapse": true, + "className": "" + }, + { + "id": "6465bdd5.15eb8c", + "type": "file in", + "z": "1c24ad9c.bebec2", + "name": "", + "filename": "/home/pi/PlanktoScope/config.json", + "filenameType": "str", + "format": "utf8", + "chunk": false, + "sendError": false, + "encoding": "none", + "x": 560, + "y": 60, + "wires": [["15ceb135.6628bf"]], + "info": "# PlanktoScope Help\nThis Node will read the content of the file named **config.txt** containing all the input placeholders.\n" + }, + { + "id": "15ceb135.6628bf", + "type": "json", + "z": "1c24ad9c.bebec2", + "name": "config.json", + "property": "payload", + "action": "", + "pretty": false, + "x": 730, + "y": 60, + "wires": [["ad541674.4791c8"]] + }, + { + "id": "7205d267.36adcc", + "type": "file", + "z": "1c24ad9c.bebec2", + "name": "", + "filename": "/home/pi/PlanktoScope/config.json", + "appendNewline": true, + "createDir": true, + "overwriteFile": "true", + "encoding": "none", + "x": 990, + "y": 160, + "wires": [[]] + }, + { + "id": "2e6ddf51.c0dba", + "type": "json", + "z": "1c24ad9c.bebec2", + "name": "config.json", + "property": "payload", + "action": "str", + "pretty": true, + "x": 730, + "y": 160, + "wires": [["7205d267.36adcc"]] + }, + { + "id": "ad541674.4791c8", + "type": "function", + "z": "1c24ad9c.bebec2", + "name": "Global Set", + "func": "global.set(\"config_keys\", Object.keys(msg.payload));\n\nfor (const key in msg.payload) {\n global.set(key, msg.payload[key]);\n}\n\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "x": 910, + "y": 60, + "wires": [[]] + }, + { + "id": "3e9a33c.141384c", + "type": "inject", + "z": "1c24ad9c.bebec2", + "name": "Load config", + "props": [ + { + "p": "topic", + "vt": "str" + } + ], + "repeat": "", + "crontab": "", + "once": true, + "onceDelay": 0.1, + "topic": "", + "payloadType": "str", + "x": 230, + "y": 60, + "wires": [["6465bdd5.15eb8c"]] + }, + { + "id": "3ad9835.08c937c", + "type": "function", + "z": "1c24ad9c.bebec2", + "name": "get config payload", + "func": "keys = global.get(\"config_keys\")\n\nvar payload = {}\n\nkeys.forEach(function(item, index, array) {\n payload[item] = global.get(item);\n})\n\nreturn {\"payload\": payload};", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 410, + "y": 160, + "wires": [["2e6ddf51.c0dba"]] + }, + { + "id": "f439663c.8abd3", + "type": "ui_ui_control", + "z": "1c24ad9c.bebec2", + "name": "Connect Event", + "events": "connect", + "x": 220, + "y": 100, + "wires": [["6465bdd5.15eb8c"]] + }, + { + "id": "82099021.9ceb08", + "type": "file", + "z": "4ed26b8b.253504", + "name": "", + "filename": "/home/pi/PlanktoScope/hardware.json", + "appendNewline": true, + "createDir": true, + "overwriteFile": "true", + "encoding": "none", + "x": 660, + "y": 40, + "wires": [[]] + }, + { + "id": "bb0a8725.a1849", + "type": "json", + "z": "4ed26b8b.253504", + "name": "Create JSON", + "property": "payload", + "action": "str", + "pretty": true, + "x": 490, + "y": 40, + "wires": [["82099021.9ceb08"]] + }, + { + "id": "53d163be.47cf24", + "type": "function", + "z": "4ed26b8b.253504", + "name": "Update and retrieve hardware_conf", + "func": "// change global\nhardware_conf = global.get(\"hardware_conf\");\n\nif (msg.topic == \"process_pixel_fixed\" && msg.payload == 0){\n delete hardware_conf[msg.topic]\n delete msg.topic\n}\n\nif (msg.topic !== null && msg.topic !== undefined){\n hardware_conf[msg.topic] = msg.payload;\n global.set(\"hardware_conf\", hardware_conf);\n}\n\nreturn {\"payload\": hardware_conf};", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 240, + "y": 40, + "wires": [["bb0a8725.a1849"]] + }, + { + "id": "48ceeda454438cb7", + "type": "file in", + "z": "e6665421f66ea4c8", + "name": "", + "filename": "/home/pi/PlanktoScope/hardware.json", + "filenameType": "str", + "format": "utf8", + "chunk": false, + "sendError": false, + "encoding": "none", + "x": 250, + "y": 40, + "wires": [["853c938a270fd85e"]], + "info": "# PlanktoScope Help\nThis Node will read the content of the file named **config.txt** containing all the input placeholders.\n" + }, + { + "id": "853c938a270fd85e", + "type": "json", + "z": "e6665421f66ea4c8", + "name": "Parse JSON", + "property": "payload", + "action": "", + "pretty": false, + "x": 510, + "y": 40, + "wires": [["2b1a67ac127f3fe7"]] + }, + { + "id": "2b1a67ac127f3fe7", + "type": "change", + "z": "e6665421f66ea4c8", + "name": "", + "rules": [ + { + "t": "set", + "p": "hardware_conf", + "pt": "global", + "to": "payload", + "tot": "msg" + } + ], + "action": "", + "property": "", + "from": "", + "to": "", + "reg": false, + "x": 730, + "y": 40, + "wires": [[]] + }, + { + "id": "2f30a6ee99587899", + "type": "comment", + "z": "eaae323a.31b3", + "name": "LICENSE", + "info": "Copyright 2022 Thibaut Pollina and Romain Bazile\nLicensed under GPL v3.0", + "x": 140, + "y": 600, + "wires": [] + }, + { + "id": "4e78af2d.90be7", + "type": "ui_ui_control", + "z": "eaae323a.31b3", + "name": "", + "events": "change", + "x": 440, + "y": 160, + "wires": [[]] + }, + { + "id": "7789839d.69b48c", + "type": "ui_template", + "z": "eaae323a.31b3", + "group": "4e0cd5ea.17e59c", + "name": "Optic Configuration", + "order": 1, + "width": 4, + "height": 4, + "format": "\n \n
Optic Configuration
\n", + "storeOutMessages": true, + "fwdInMessages": true, + "resendOnRefresh": false, + "templateScope": "local", + "x": 130, + "y": 100, + "wires": [["4e78af2d.90be7"]] + }, + { + "id": "6ea6c306.f9c12c", + "type": "ui_template", + "z": "eaae323a.31b3", + "group": "ef590206.24f6", + "name": "Fluidic Acquisition", + "order": 1, + "width": 4, + "height": 4, + "format": "\n \n
Fluidic Acquisition
\n", + "storeOutMessages": true, + "fwdInMessages": true, + "resendOnRefresh": false, + "templateScope": "local", + "x": 130, + "y": 140, + "wires": [["4e78af2d.90be7"]] + }, + { + "id": "bb9eb153.9e36c", + "type": "ui_template", + "z": "eaae323a.31b3", + "group": "ae8f6620.073358", + "name": "Segmentation", + "order": 1, + "width": 4, + "height": 4, + "format": "\n \n
Segmentation
\n", + "storeOutMessages": true, + "fwdInMessages": true, + "resendOnRefresh": false, + "templateScope": "local", + "x": 140, + "y": 180, + "wires": [["4e78af2d.90be7"]] + }, + { + "id": "eaf8ee7f.96f44", + "type": "ui_template", + "z": "eaae323a.31b3", + "group": "196518b2.4d53b7", + "name": "Gallery", + "order": 1, + "width": 4, + "height": 4, + "format": "\n \n
Gallery
\n", + "storeOutMessages": true, + "fwdInMessages": true, + "resendOnRefresh": false, + "templateScope": "local", + "x": 160, + "y": 220, + "wires": [["4e78af2d.90be7"]] + }, + { + "id": "c1b1469.9650eb8", + "type": "ui_template", + "z": "eaae323a.31b3", + "group": "777a7c33.fcd804", + "name": "System Monitoring", + "order": 1, + "width": 4, + "height": 4, + "format": "\n \n
System Monitoring
\n", + "storeOutMessages": true, + "fwdInMessages": true, + "resendOnRefresh": false, + "templateScope": "local", + "x": 130, + "y": 260, + "wires": [["4e78af2d.90be7"]] + }, + { + "id": "abafd6e6.04a5f8", + "type": "ui_template", + "z": "eaae323a.31b3", + "group": "6f97e7ae.270c48", + "name": "Sample", + "order": 1, + "width": 4, + "height": 4, + "format": "\n \n
Sample
\n
\n In doubt? Start Here!\n", + "storeOutMessages": true, + "fwdInMessages": true, + "resendOnRefresh": false, + "templateScope": "local", + "x": 160, + "y": 60, + "wires": [["4e78af2d.90be7"]] + }, + { + "id": "dab82064.26a8d", + "type": "ui_button", + "z": "eaae323a.31b3", + "name": "Unlock button", + "group": "f3ca28ef.4df0a8", + "order": 2, + "width": 0, + "height": 0, + "passthru": false, + "label": "Unlock button", + "tooltip": "", + "color": "", + "bgcolor": "", + "icon": "", + "payload": "shutdown", + "payloadType": "flow", + "topic": "", + "x": 120, + "y": 380, + "wires": [["6c3a3b4.78cad44"]] + }, + { + "id": "1c658761.b852a1", + "type": "ui_toast", + "z": "eaae323a.31b3", + "position": "dialog", + "displayTime": "3", + "highlight": "", + "sendall": true, + "outputs": 1, + "ok": "YES PLEASE", + "cancel": "NO!", + "raw": false, + "topic": "Are you sure?", + "name": "Confirmation message", + "x": 800, + "y": 380, + "wires": [["8f1b8e23.daafe"]] + }, + { + "id": "a48ff63f.db5e18", + "type": "inject", + "z": "eaae323a.31b3", + "name": "disabled", + "props": [ + { + "p": "enabled", + "v": "false", + "vt": "bool" + } + ], + "repeat": "", + "crontab": "", + "once": true, + "onceDelay": 0.1, + "topic": "", + "x": 140, + "y": 420, + "wires": [["d58039a9.6e7928"]] + }, + { + "id": "b67a7147.65fcd8", + "type": "ui_button", + "z": "eaae323a.31b3", + "name": "Shutdown button", + "group": "f3ca28ef.4df0a8", + "order": 4, + "width": 0, + "height": 0, + "passthru": false, + "label": "Shutdown", + "tooltip": "", + "color": "", + "bgcolor": "#AD1625", + "icon": "fa-power-off fa-2x", + "payload": "Do you want to turn the machine off now?", + "payloadType": "str", + "topic": "", + "x": 550, + "y": 380, + "wires": [["1c658761.b852a1"]] + }, + { + "id": "d58039a9.6e7928", + "type": "change", + "z": "eaae323a.31b3", + "name": "", + "rules": [ + { + "t": "set", + "p": "shutdown", + "pt": "flow", + "to": "false", + "tot": "bool" + }, + { + "t": "set", + "p": "enabled", + "pt": "msg", + "to": "shutdown", + "tot": "flow" + } + ], + "action": "", + "property": "", + "from": "", + "to": "", + "reg": false, + "x": 320, + "y": 420, + "wires": [["b67a7147.65fcd8"]] + }, + { + "id": "6c3a3b4.78cad44", + "type": "function", + "z": "eaae323a.31b3", + "name": "Toggle", + "func": "flow.set(\"shutdown\", !flow.get(\"shutdown\"))\nmsg.enabled = flow.get(\"shutdown\")\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "x": 290, + "y": 380, + "wires": [["b67a7147.65fcd8"]] + }, + { + "id": "d1153ad6.40d738", + "type": "ui_template", + "z": "eaae323a.31b3", + "group": "f3ca28ef.4df0a8", + "name": "Shutdown information", + "order": 1, + "width": 0, + "height": 0, + "format": "
To prevent data corruption, please always shutdown the machine before unplugging the unit.\n

\nRemember to first unlock the shutdown button.\n
", + "storeOutMessages": true, + "fwdInMessages": false, + "resendOnRefresh": true, + "templateScope": "local", + "x": 120, + "y": 320, + "wires": [[]] + }, + { + "id": "e08cfcb8.2a67e8", + "type": "link out", + "z": "eaae323a.31b3", + "name": "Home shutdown button", + "links": ["b81b990a.d4dca"], + "x": 715, + "y": 500, + "wires": [] + }, + { + "id": "ce7087fc.dcc9e8", + "type": "ui_toast", + "z": "eaae323a.31b3", + "position": "dialog", + "displayTime": "10", + "highlight": "", + "sendall": true, + "outputs": 1, + "ok": "OK", + "cancel": "", + "raw": false, + "topic": "Turning off now!", + "name": "Shutdown message", + "x": 570, + "y": 540, + "wires": [[]] + }, + { + "id": "7d1626a0.deb85", + "type": "change", + "z": "eaae323a.31b3", + "name": "shutdown!", + "rules": [ + { + "t": "set", + "p": "payload", + "pt": "msg", + "to": "shutdown", + "tot": "str" + } + ], + "action": "", + "property": "", + "from": "", + "to": "", + "reg": false, + "x": 300, + "y": 500, + "wires": [["e08cfcb8.2a67e8"]] + }, + { + "id": "8f1b8e23.daafe", + "type": "switch", + "z": "eaae323a.31b3", + "name": "", + "property": "payload", + "propertyType": "msg", + "rules": [ + { + "t": "eq", + "v": "NO!", + "vt": "str" + }, + { + "t": "else" + } + ], + "checkall": "true", + "repair": false, + "outputs": 2, + "x": 150, + "y": 500, + "wires": [["d58039a9.6e7928"], ["7d1626a0.deb85", "281a56c9.ec7902"]] + }, + { + "id": "281a56c9.ec7902", + "type": "change", + "z": "eaae323a.31b3", + "name": "Shutdown message", + "rules": [ + { + "t": "set", + "p": "payload", + "pt": "msg", + "to": "Please wait a minute before disconnecting the machine from its power supply!", + "tot": "str" + } + ], + "action": "", + "property": "", + "from": "", + "to": "", + "reg": false, + "x": 330, + "y": 540, + "wires": [["ce7087fc.dcc9e8"]] + }, + { + "id": "4557d689.a4fa88", + "type": "ui_text_input", + "z": "b771c342.49603", + "name": "sample_ship", + "label": "Name of the ship", + "tooltip": "", + "group": "3e1ba03d.f01d8", + "order": 2, + "width": 0, + "height": 0, + "passthru": true, + "mode": "text", + "delay": "300", + "topic": "sample_ship", + "sendOnBlur": true, + "className": "", + "topicType": "str", + "x": 670, + "y": 80, + "wires": [["9f501f49.45645"]] + }, + { + "id": "fcfc31ae.af3af", + "type": "ui_dropdown", + "z": "b771c342.49603", + "name": "sample_sampling_gear", + "label": "Sampling gear*", + "tooltip": "", + "place": "Choose from list", + "group": "3e1ba03d.f01d8", + "order": 6, + "width": 0, + "height": 0, + "passthru": true, + "multiple": false, + "options": [ + { + "label": "High Speed Net", + "value": "net_hsn", + "type": "str" + }, + { + "label": "Tara Decknet", + "value": "net_decknet", + "type": "str" + }, + { + "label": "Plankton net", + "value": "net", + "type": "str" + }, + { + "label": "Niskin bottle 12L", + "value": "niskin_12L", + "type": "str" + }, + { + "label": "Niskin bottle 24L", + "value": "niskin_24L", + "type": "str" + }, + { + "label": "Pass Hull", + "value": "pass_hull", + "type": "str" + }, + { + "label": "Single location (with net or bucket)", + "value": "single_location", + "type": "str" + }, + { + "label": "Lab culture", + "value": "culture", + "type": "str" + }, + { + "label": "Test", + "value": "test", + "type": "str" + } + ], + "payload": "", + "topic": "sample_sampling_gear", + "topicType": "str", + "className": "", + "x": 630, + "y": 200, + "wires": [["9f501f49.45645", "46eb1bf8.3dc5f4", "3ac7b631f5d8ef90"]] + }, + { + "id": "82c5fc77.59c97", + "type": "ui_text_input", + "z": "b771c342.49603", + "name": "sample_operator", + "label": "Name of the operator*", + "tooltip": "", + "group": "3e1ba03d.f01d8", + "order": 3, + "width": 0, + "height": 0, + "passthru": true, + "mode": "text", + "delay": "300", + "topic": "sample_operator", + "sendOnBlur": true, + "className": "", + "topicType": "str", + "x": 650, + "y": 160, + "wires": [["9f501f49.45645"]] + }, + { + "id": "9c882b37.fde668", + "type": "ui_text_input", + "z": "b771c342.49603", + "name": "sample_project", + "label": "Name of the project*", + "tooltip": "", + "group": "3e1ba03d.f01d8", + "order": 1, + "width": 0, + "height": 0, + "passthru": true, + "mode": "text", + "delay": "300", + "topic": "sample_project", + "sendOnBlur": true, + "className": "", + "topicType": "str", + "x": 660, + "y": 40, + "wires": [["9f501f49.45645"]] + }, + { + "id": "94eb4221.9b92c", + "type": "ui_text_input", + "z": "b771c342.49603", + "name": "sample_id", + "label": "Station ID*", + "tooltip": "", + "group": "3e1ba03d.f01d8", + "order": 4, + "width": 0, + "height": 0, + "passthru": true, + "mode": "text", + "delay": "300", + "topic": "sample_id", + "sendOnBlur": true, + "className": "", + "topicType": "str", + "x": 670, + "y": 120, + "wires": [["9f501f49.45645"]] + }, + { + "id": "9f501f49.45645", + "type": "function", + "z": "b771c342.49603", + "name": "set global", + "func": "global.set(msg.topic,msg.payload);", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 1080, + "y": 200, + "wires": [[]] + }, + { + "id": "222c851d.5d0a3a", + "type": "ui_ui_control", + "z": "b771c342.49603", + "name": "", + "events": "change", + "x": 400, + "y": 880, + "wires": [[]] + }, + { + "id": "52f6b103.1efb6", + "type": "ui_toast", + "z": "b771c342.49603", + "position": "dialog", + "displayTime": "3", + "highlight": "", + "sendall": true, + "outputs": 1, + "ok": "OK", + "cancel": "", + "raw": false, + "topic": "", + "name": "", + "x": 710, + "y": 980, + "wires": [[]] + }, + { + "id": "986d960a.c75908", + "type": "function", + "z": "b771c342.49603", + "name": "Check form", + "func": "var sample_project= global.get(\"sample_project\");\nvar sample_id= global.get(\"sample_id\");\nvar sample_operator= global.get(\"sample_operator\");\nvar sample_sampling_gear= global.get(\"sample_sampling_gear\");\nvar object_lat= global.get(\"object_lat\");\nvar object_lon= global.get(\"object_lon\");\nvar object_date= global.get(\"object_date\");\nvar object_time= global.get(\"object_time\");\nif (sample_project === undefined || sample_project === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Sample project\"\n return [null, msg];\n}\n\nelse if (sample_id === undefined || sample_id === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Sample ID\"\n return [null, msg];\n}\n\nelse if (sample_operator === undefined || sample_operator === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Sample operator\"\n return [null, msg];\n}\n\nelse if (sample_sampling_gear === undefined || sample_sampling_gear === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Sample sampling gear\"\n return [null, msg];\n}\n\nelse if (object_lat === undefined || object_lat === null) {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Latitude of sample\"\n return [null, msg];\n}\n\nelse if (object_lon === undefined || object_lon === null) {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Longitude of sample\"\n return [null, msg];\n}\n\nelse if (object_date === undefined || object_date === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Date of sample\"\n return [null, msg];\n}\n\nelse if (object_time === undefined || object_time === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Time of sample\"\n return [null, msg];\n}\nelse if (sample_sampling_gear.startsWith(\"net\")){\n var object_lat_end = global.get(\"object_lat_end\");\n var object_lon_end = global.get(\"object_lon_end\");\n var object_date_end = global.get(\"object_date_end\");\n var object_time_end = global.get(\"object_time_end\");\n var sample_gear_net_opening = global.get(\"sample_gear_net_opening\");\n\n if (object_lat_end === undefined || object_lat_end === null) {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Latitude of retrieval\"\n return [null, msg];\n }\n \n else if (object_lon_end === undefined || object_lon_end === null) {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Longitude of retrieval\"\n return [null, msg];\n }\n \n else if (object_date_end === undefined || object_date_end === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Date of retrieval\"\n return [null, msg];\n }\n \n else if (object_time_end === undefined || object_time_end === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Time of retrieval\"\n return [null, msg];\n }\n \n else if (sample_gear_net_opening === undefined || sample_gear_net_opening === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Net opening dimension\"\n return [null, msg];\n }\n \n if (sample_sampling_gear == \"net_decknet\"){\n var sample_total_volume = global.get(\"sample_total_volume\");\n if (sample_total_volume === undefined || sample_total_volume === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Decknet flowmeter readings\"\n return [null, msg];\n }\n }\n}\nmsg.topic = \"config_save\"\nmsg.payload={\"tab\":\"Optic Configuration\"};\n\nreturn [msg, null];", + "outputs": 2, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 470, + "y": 940, + "wires": [["726a7822.cd6298", "e2b277c1.07283"], ["52f6b103.1efb6"]], + "outputLabels": ["message", "error"] + }, + { + "id": "18f44504.cac66b", + "type": "gpsd", + "z": "b771c342.49603", + "name": "", + "hostname": "localhost", + "port": "2947", + "tpv": true, + "sky": false, + "info": false, + "device": false, + "gst": false, + "att": false, + "x": 250, + "y": 1240, + "wires": [ + [ + "258b4562.9f778a", + "54e37580.fdc31c", + "cc21ca16.b92928", + "4a4de52c.cf2884", + "73c4a14a.9b93c8" + ] + ] + }, + { + "id": "726a7822.cd6298", + "type": "ui_ui_control", + "z": "b771c342.49603", + "name": "", + "events": "change", + "x": 700, + "y": 900, + "wires": [[]] + }, + { + "id": "16de754c.cc969b", + "type": "ui_button", + "z": "b771c342.49603", + "name": "", + "group": "5517c651.b2f668", + "order": 1, + "width": 5, + "height": 1, + "passthru": false, + "label": "Previous", + "tooltip": "", + "color": "#097479", + "bgcolor": "white", + "icon": "keyboard_return", + "payload": "{\"tab\":\"Home\"}", + "payloadType": "json", + "topic": "", + "x": 240, + "y": 880, + "wires": [["222c851d.5d0a3a"]] + }, + { + "id": "84f3d040.5f7ea", + "type": "ui_button", + "z": "b771c342.49603", + "name": "", + "group": "5517c651.b2f668", + "order": 2, + "width": 5, + "height": 1, + "passthru": false, + "label": "Continue", + "tooltip": "", + "color": "#097479", + "bgcolor": "white", + "icon": "keyboard_tab", + "payload": "{\"tab\":\"Home\"}", + "payloadType": "json", + "topic": "", + "x": 240, + "y": 940, + "wires": [["986d960a.c75908"]] + }, + { + "id": "d027a6bf.7049e8", + "type": "function", + "z": "b771c342.49603", + "name": "get sample_projet", + "func": "msg.payload = msg.payload.sample_project;\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 310, + "y": 40, + "wires": [["9c882b37.fde668"]] + }, + { + "id": "5a811caf.0f3144", + "type": "function", + "z": "b771c342.49603", + "name": "get sample_ship", + "func": "msg.payload = msg.payload.sample_ship;\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 300, + "y": 80, + "wires": [["4557d689.a4fa88"]] + }, + { + "id": "45911c98.2bd83c", + "type": "function", + "z": "b771c342.49603", + "name": "get sample_id", + "func": "msg.payload = msg.payload.sample_id;\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 300, + "y": 120, + "wires": [["94eb4221.9b92c"]] + }, + { + "id": "1e09a4ab.72996b", + "type": "function", + "z": "b771c342.49603", + "name": "get sample_operator", + "func": "msg.payload = msg.payload.sample_operator;\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 320, + "y": 160, + "wires": [["82c5fc77.59c97"]] + }, + { + "id": "a3272681.f271c8", + "type": "function", + "z": "b771c342.49603", + "name": "get sample_sampling_gear", + "func": "msg.topic = \"sample_sampling_gear\"\nif (msg.payload.sample_sampling_gear === undefined){\n msg.payload = \"net\";\n}\nelse\n{\n msg.payload = msg.payload.sample_sampling_gear;\n}\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 340, + "y": 200, + "wires": [["fcfc31ae.af3af"]] + }, + { + "id": "a6907a38.f6611", + "type": "subflow:1c24ad9c.bebec2", + "z": "b771c342.49603", + "name": "", + "env": [], + "x": 70, + "y": 220, + "wires": [ + [ + "d027a6bf.7049e8", + "5a811caf.0f3144", + "45911c98.2bd83c", + "1e09a4ab.72996b", + "8dff1648.82e42", + "9f04c5ec.75f3d8", + "f408a273.4fb538", + "e73fd87d.d24e4", + "489c8e06.cc7d6", + "a3272681.f271c8" + ] + ] + }, + { + "id": "e2b277c1.07283", + "type": "subflow:1c24ad9c.bebec2", + "z": "b771c342.49603", + "name": "", + "env": [], + "x": 690, + "y": 940, + "wires": [[]] + }, + { + "id": "7116e906.9f50f", + "type": "ui_text", + "z": "b771c342.49603", + "group": "fc5e4e6f.5b1c8", + "order": 1, + "width": 10, + "height": 1, + "name": "GPS Status Display", + "label": "GPS Status:", + "format": "{{msg.payload}}", + "layout": "row-center", + "x": 730, + "y": 1080, + "wires": [] + }, + { + "id": "9c7f7fc9.c8d3a", + "type": "ui_text_input", + "z": "b771c342.49603", + "name": "object_depth_max", + "label": "Max sampling depth (m)", + "tooltip": "in m", + "group": "3e1ba03d.f01d8", + "order": 10, + "width": 5, + "height": 1, + "passthru": true, + "mode": "number", + "delay": "300", + "topic": "object_depth_max", + "sendOnBlur": true, + "className": "", + "topicType": "str", + "x": 650, + "y": 240, + "wires": [["9f501f49.45645"]] + }, + { + "id": "317eeeb7.8d3042", + "type": "ui_text_input", + "z": "b771c342.49603", + "name": "object_depth_min", + "label": "Min sampling depth (m)", + "tooltip": "in m", + "group": "3e1ba03d.f01d8", + "order": 9, + "width": 5, + "height": 1, + "passthru": true, + "mode": "number", + "delay": "300", + "topic": "object_depth_min", + "sendOnBlur": true, + "className": "", + "topicType": "str", + "x": 650, + "y": 280, + "wires": [["9f501f49.45645"]] + }, + { + "id": "cbb123ab.fd3428", + "type": "ui_ui_control", + "z": "b771c342.49603", + "name": "show/hide net groups", + "events": "change", + "x": 1320, + "y": 300, + "wires": [[]] + }, + { + "id": "642ff403.1ed91c", + "type": "ui_text_input", + "z": "b771c342.49603", + "name": "sample_concentrated_sample_volume", + "label": "Concentrated sample volume (mL)", + "tooltip": "Volume extracted from the net codend (in mL)", + "group": "3e1ba03d.f01d8", + "order": 12, + "width": 10, + "height": 1, + "passthru": true, + "mode": "number", + "delay": "300", + "topic": "sample_concentrated_sample_volume", + "sendOnBlur": true, + "className": "", + "topicType": "str", + "x": 590, + "y": 440, + "wires": [["9f501f49.45645"]] + }, + { + "id": "e967b844.46aa48", + "type": "ui_text_input", + "z": "b771c342.49603", + "name": "sample_gear_net_opening", + "label": "Net opening dimension (mm)", + "tooltip": "Size of the net mouth opening (in mm)", + "group": "cf5d9f0e.d57e7", + "order": 1, + "width": 10, + "height": 1, + "passthru": true, + "mode": "number", + "delay": "300", + "topic": "sample_gear_net_opening", + "sendOnBlur": true, + "className": "", + "topicType": "str", + "x": 620, + "y": 320, + "wires": [["9f501f49.45645"]] + }, + { + "id": "c0ce5626.b6c5", + "type": "ui_toast", + "z": "b771c342.49603", + "position": "dialog", + "displayTime": "3", + "highlight": "", + "sendall": true, + "outputs": 1, + "ok": "OK", + "cancel": "", + "raw": false, + "topic": "", + "name": "", + "x": 1230, + "y": 620, + "wires": [[]] + }, + { + "id": "c33f1124.af6688", + "type": "ui_form", + "z": "b771c342.49603", + "name": "sample_location", + "label": "Sample Location", + "group": "cef1e703.bcf3c8", + "order": 1, + "width": 0, + "height": 0, + "options": [ + { + "label": "Latitude (36.574439°N or 36°57.4439'N)", + "value": "object_lat", + "type": "text", + "required": true, + "rows": null + }, + { + "label": "Longitude (110.42100°W or 110°4.2100'W)", + "value": "object_lon", + "type": "text", + "required": true, + "rows": null + }, + { + "label": "Date (YYYY-MM-DD, UTC)", + "value": "object_date", + "type": "text", + "required": true, + "rows": null + }, + { + "label": "Time (HH:MM(:SS), UTC 24h)", + "value": "object_time", + "type": "text", + "required": true, + "rows": null + } + ], + "formValue": { + "object_lat": "", + "object_lon": "", + "object_date": "", + "object_time": "" + }, + "payload": "", + "submit": "Validate", + "cancel": "Reset", + "topic": "sample_location", + "x": 660, + "y": 580, + "wires": [["14658615.47c862", "3318a1aaa70fc2ee"]] + }, + { + "id": "358908cd.416ab", + "type": "ui_form", + "z": "b771c342.49603", + "name": "net_throw_location", + "label": "Net Throw Location", + "group": "cf5d9f0e.d57e7", + "order": 3, + "width": 0, + "height": 0, + "options": [ + { + "label": "Latitude (36.574439°N or 36°57.4439'N)", + "value": "object_lat", + "type": "text", + "required": true, + "rows": null + }, + { + "label": "Longitude (110.42100°W or 110°4.2100'W)", + "value": "object_lon", + "type": "text", + "required": true, + "rows": null + }, + { + "label": "Date (YYYY-MM-DD UTC)", + "value": "object_date", + "type": "text", + "required": true, + "rows": null + }, + { + "label": "Time (HH:MM, UTC 24h)", + "value": "object_time", + "type": "text", + "required": true, + "rows": null + } + ], + "formValue": { + "object_lat": "", + "object_lon": "", + "object_date": "", + "object_time": "" + }, + "payload": "", + "submit": "Validate", + "cancel": "", + "topic": "net_throw_location", + "topicType": "str", + "splitLayout": false, + "className": "", + "x": 650, + "y": 620, + "wires": [["14658615.47c862", "cc67c97f55a340d3"]] + }, + { + "id": "56d40584.eff4e4", + "type": "ui_form", + "z": "b771c342.49603", + "name": "net_retrieval_location", + "label": "Net Retrieval Location", + "group": "cf5d9f0e.d57e7", + "order": 4, + "width": 0, + "height": 0, + "options": [ + { + "label": "Latitude (36.574439°N or 36°57.4439'N)", + "value": "object_lat_end", + "type": "text", + "required": true, + "rows": null + }, + { + "label": "Longitude (110.42100°W or 110°4.2100'W)", + "value": "object_lon_end", + "type": "text", + "required": true, + "rows": null + }, + { + "label": "Date (YYYY-MM-DD UTC)", + "value": "object_date_end", + "type": "text", + "required": true, + "rows": null + }, + { + "label": "Time (HH:MM, UTC 24h)", + "value": "object_time_end", + "type": "text", + "required": true, + "rows": null + } + ], + "formValue": { + "object_lat_end": "", + "object_lon_end": "", + "object_date_end": "", + "object_time_end": "" + }, + "payload": "", + "submit": "Validate", + "cancel": "", + "topic": "net_retrieval_location", + "topicType": "str", + "splitLayout": false, + "x": 640, + "y": 660, + "wires": [["14658615.47c862", "9c8f370d124a55e4"]] + }, + { + "id": "14658615.47c862", + "type": "function", + "z": "b771c342.49603", + "name": "Validate Location / Timestamp", + "func": "// Code added here will be run once\n// whenever the node is started.\nfunction ConvertDDMMToDD(input) {\n // Input Format 36°57.4439'N, 110°4.2100'W\n // From https://stackoverflow.com/questions/1140189/converting-latitude-and-longitude-to-decimal-values\n if (!input.match(/\\d+°\\d+\\.*\\d*\\'[NSEW]/)){\n \treturn \"parsing error\"\n }\n var parts = input.split(/[^\\d.\\w]+/)\n if (parts.length != 3){\n \treturn \"parsing error\"\n }\n var dd = Number(parts[0]) + Number(parts[1])/60\n return dd.toFixed(6) + parts[2]\n}\n\nfunction ValidateCoordinates(input, lat){\n // Input Format 36.574439°N, 110.42100°W\n // Or 36°57.4439'N, 110°4.2100'W\n if (input.match(\"'\")){\n input = ConvertDDMMToDD(input)\n }\n \n var error = {}\n\n if (input.startsWith(\"parsing error\")){\n error.topic = \"Error with the \"\n error.payload = \"You need to respect the format example, 36.574439°N or 36°57.4439'N\"\n return [null, error]\n }\n \n var direction = input.match(/[NSEW]/)\n var position = input.match(/[\\+\\-\\d\\.]+/)\n \n if (direction === null){\n error.topic = \"Error with the \"\n error.payload = \"You need to explicitely enter N/S/E/W\"\n return [null, error]\n }\n \n // Test that position is only made of digits!\n if(/^[\\+\\-]/.test(position)){\n error.topic = \"Error with the \"\n error.payload = \"Use of +/- sign is inconsistent with N/S/E/W letter! Please only use N/S/E/W!\"\n return [null, error]\n }\n \n var dd = Number(position)\n if (lat){\n // Check latitude\n if (direction == \"S\" || direction == \"N\") {\n if (dd>90.0){\n error.topic = \"Error with the \"\n error.payload = \"Latitude is more than 90°\"\n return [null, error]\n }\n }\n if (direction == \"W\" || direction == \"E\") {\n error.topic = \"Error with the \"\n error.payload = \"This is not a Latitude!\"\n return [null, error]\n }\n }\n else{\n // Check longitude\n if (direction == \"W\" || direction == \"E\") {\n if (dd>180.0){\n error.topic = \"Error with the \"\n error.payload = \"Longitude is more than 180°\"\n return [null, error]\n }\n }\n if (direction == \"N\" || direction == \"S\") {\n error.topic = \"Error with the \"\n error.payload = \"This is not a Longitude!\"\n return [null, error]\n }\n }\n \n if (direction == \"S\" || direction == \"W\") {\n dd = dd * -1\n } // Don't do anything for N or E\n return [dd.toFixed(4), null]\n \n}\n\nfunction ValidateDate(input){\n // Input Format 2020-12-25\n var error = {};\n \n if (! /20\\d{2}-[0-1]\\d-[0-3]\\d/.test(input)){\n error.topic = \"Error with the date\";\n error.payload = \"The date should respect the ISO format YYYY-MM-DD\";\n return [null, error];\n }\n else {\n var date = input.match(/\\d+/g);\n if (!((2000 < date[0]) && (date[0] < 2100))){\n error.topic = \"Error with the date\"\n error.payload = \"The year should be between 2000 and 2100\"\n return [null, error]\n }\n else if (!((0 < date[1]) && (date[1] <= 12))){\n error.topic = \"Error with the date\"\n error.payload = \"The month should be between 01 and 12\"\n return [null, error]\n }\n else if (!((0 < date[2]) && (date[2] <= 31))){\n error.topic = \"Error with the date\"\n error.payload = \"The day should be between 01 and 31\"\n return [null, error]\n }\n }\n return [input.replace(/-/g, ''), null]\n}\n\nfunction ValidateTime(input){\n // Input Format 12:00\n var error = {}\n \n if (! /[0-2]?\\d:[0-5]\\d/.test(input)){\n error.topic = \"Error with the time\"\n error.payload = \"The date should respect the ISO format HH:MM\"\n return [null, error]\n }\n else {\n var time = input.match(/\\d+/g)\n \n if (!((0 <= time[0]) && (time[0] < 24))){\n error.topic = \"Error with the time\"\n error.payload = \"The hours should be 0 and 23.\"\n return [null, error]\n }\n else if (!((0 <= time[1]) && (time[1] < 60))){\n error.topic = \"Error with the time\"\n error.payload = \"The minutes should be between 0 and 59\"\n return [null, error]\n }\n }\n return [input.replace(/:/g, ''), null]\n}\n\n\nvar ret\nvar payload_for_form = {payload:{}}\nmsg.valid = false\n\nif (msg.topic == \"culture_timestamp\"){\n ret = ValidateDate(msg.payload.object_date)\n if (ret[1] !== null){\n msg.topic = ret[1].topic + \" of the sample\"\n msg.payload = ret[1].payload\n return [msg, null]\n }\n global.set(\"object_date\", ret[0])\n \n ret = ValidateTime(msg.payload.object_time)\n if (ret[1] !== null){\n msg.topic = ret[1].topic + \" of the sample\"\n msg.payload = ret[1].payload\n return [msg, null]\n }\n global.set(\"object_time\", ret[0])\n return [{topic: \"Date and time format valid!\", payload: \"All good!\", valid: true}, payload_for_form]\n}\nelse if (msg.topic == \"net_retrieval_location\"){\n ret = ValidateCoordinates(msg.payload.object_lat_end, true);\n if (ret[1] !== null){\n msg.topic = ret[1].topic + \" Latitude\"\n msg.payload = ret[1].payload\n return [msg, null]\n }\n global.set(\"object_lat_end\", ret[0])\n ret = ValidateCoordinates(msg.payload.object_lon_end, false)\n if (ret[1] !== null){\n msg.topic = ret[1].topic + \" Longitude\"\n msg.payload = ret[1].payload\n return [msg, null]\n }\n global.set(\"object_lon_end\", ret[0]);\n \n ret = ValidateDate(msg.payload.object_date_end)\n if (ret[1] !== null){\n msg.topic = ret[1].topic + \" of the sample retrieval\"\n msg.payload = ret[1].payload\n return [msg, null]\n }\n global.set(\"object_date_end\", ret[0])\n \n ret = ValidateTime(msg.payload.object_time_end)\n if (ret[1] !== null){\n msg.topic = ret[1].topic + \" of the sample retrieval\"\n msg.payload = ret[1].payload\n return [msg, null]\n }\n global.set(\"object_time_end\", ret[0])\n}\nelse{\n ret = ValidateCoordinates(msg.payload.object_lat, true);\n if (ret[1] !== null){\n msg.topic = ret[1].topic + \" Latitude\";\n msg.payload = ret[1].payload\n return [msg, null]\n }\n global.set(\"object_lat\", ret[0]);\n payload_for_form.payload[\"object_lat_end\"] = msg.payload.object_lat;\n \n ret = ValidateCoordinates(msg.payload.object_lon, false);\n if (ret[1] !== null){\n msg.topic = ret[1].topic + \" Longitude\"\n msg.payload = ret[1].payload\n return [msg, null]\n }\n global.set(\"object_lon\", ret[0])\n payload_for_form.payload[\"object_lon_end\"] = msg.payload.object_lon;\n\n ret = ValidateDate(msg.payload.object_date)\n if (ret[1] !== null){\n msg.topic = ret[1].topic + \" of the sample\"\n msg.payload = ret[1].payload\n return [msg, null]\n }\n global.set(\"object_date\", ret[0])\n payload_for_form.payload[\"object_date_end\"] = msg.payload.object_date;\n \n ret = ValidateTime(msg.payload.object_time)\n if (ret[1] !== null){\n msg.topic = ret[1].topic + \" of the sample\"\n msg.payload = ret[1].payload\n return [msg, null]\n }\n global.set(\"object_time\", ret[0])\n payload_for_form.payload[\"object_time_end\"] = msg.payload.object_time;\n}\nreturn [{topic: \"Coordinates valid!\", payload: \"All good!\", valid: true}, payload_for_form]\n", + "outputs": 2, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 930, + "y": 620, + "wires": [["c0ce5626.b6c5", "9a18a4b4.178448"], ["56d40584.eff4e4"]], + "inputLabels": ["Location form data"], + "outputLabels": ["Message", "Location validated"] + }, + { + "id": "46eb1bf8.3dc5f4", + "type": "function", + "z": "b771c342.49603", + "name": "Net check", + "func": "var decknet = {}\nvar activation_msg = {}\n\nif (msg.payload.startsWith(\"net_decknet\")){\n decknet.enabled = true;\n}\nelse {\n decknet.enabled = false;\n}\n\nif (msg.payload.startsWith(\"net\")){\n activation_msg.payload = {\"group\":{\"show\":[\"Sample_Net_Metadata\"],\"hide\":[\"Sample_Sample_Location\",\"Sample_Culture_Date_and_Time\"]}};\n}\nelse if (msg.payload != \"culture\" && msg.payload != \"test\"){\n activation_msg.payload = {\"group\":{\"show\":[\"Sample_Sample_Location\"], \"hide\":[\"Sample_Net_Metadata\",\"Sample_Culture_Date_and_Time\"]}};\n}\n\n\nreturn [decknet, activation_msg];", + "outputs": 2, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 1080, + "y": 240, + "wires": [ + ["516375fd.2ed61c", "470e382a.25691", "fbe32ac8.ff6a38"], + ["cbb123ab.fd3428"] + ], + "outputLabels": ["decknet activation", "group display control"] + }, + { + "id": "516375fd.2ed61c", + "type": "ui_text_input", + "z": "b771c342.49603", + "name": "sample_total_flowmeter_start", + "label": "Decknet flowmeter start", + "tooltip": "in L", + "group": "cf5d9f0e.d57e7", + "order": 6, + "width": 5, + "height": 1, + "passthru": false, + "mode": "text", + "delay": "300", + "topic": "sample_total_flowmeter_start", + "sendOnBlur": true, + "className": "", + "topicType": "str", + "x": 1340, + "y": 220, + "wires": [["e9bc112c.eb75f8"]] + }, + { + "id": "470e382a.25691", + "type": "ui_text_input", + "z": "b771c342.49603", + "name": "sample_total_flowmeter_end", + "label": "Decknet flowmeter end", + "tooltip": "in L", + "group": "cf5d9f0e.d57e7", + "order": 7, + "width": 5, + "height": 1, + "passthru": false, + "mode": "text", + "delay": "300", + "topic": "sample_total_flowmeter_end", + "sendOnBlur": true, + "className": "", + "topicType": "str", + "x": 1340, + "y": 260, + "wires": [["e9bc112c.eb75f8"]] + }, + { + "id": "fbe32ac8.ff6a38", + "type": "ui_template", + "z": "b771c342.49603", + "group": "cf5d9f0e.d57e7", + "name": "Decknet flowmeter read", + "order": 5, + "width": 10, + "height": 1, + "format": "
\n

Decknet flowmeter readings

\n

Those values are used to calculate sample_total_volume. Values are in L.

\n
\n", + "storeOutMessages": true, + "fwdInMessages": true, + "resendOnRefresh": true, + "templateScope": "local", + "x": 1330, + "y": 180, + "wires": [[]] + }, + { + "id": "f408a273.4fb538", + "type": "function", + "z": "b771c342.49603", + "name": "get sample_gear_net_opening", + "func": "if (msg.payload.sample_gear_net_opening === null){\n msg.payload = 0;\n global.set(\"sample_gear_net_opening\",msg.payload);\n}\nelse\n{\n msg.payload = msg.payload.sample_gear_net_opening;\n}\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 350, + "y": 320, + "wires": [["e967b844.46aa48"]] + }, + { + "id": "8dff1648.82e42", + "type": "function", + "z": "b771c342.49603", + "name": "get object_depth_max", + "func": "if (msg.payload.object_depth_max === null){\n msg.payload = 0;\n global.set(\"object_depth_max\",msg.payload);\n}\nelse\n{\n msg.payload = msg.payload.object_depth_max;\n}\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 320, + "y": 240, + "wires": [["9c7f7fc9.c8d3a"]] + }, + { + "id": "9f04c5ec.75f3d8", + "type": "function", + "z": "b771c342.49603", + "name": "get object_depth_min", + "func": "if (msg.payload.object_depth_min === null){\n msg.payload = 0;\n global.set(\"object_depth_min\",msg.payload);\n}\nelse\n{\n msg.payload = msg.payload.object_depth_min;\n}\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 320, + "y": 280, + "wires": [["317eeeb7.8d3042"]] + }, + { + "id": "9a18a4b4.178448", + "type": "function", + "z": "b771c342.49603", + "name": "calculate sample_total_volume", + "func": "\n/*object_lat = 33.95 \nobject_lon = 118.4 \nobject_lat_end = 40.6333 \nobject_lon_end = 73.78333\nsample_gear_net_opening = 40*/\n\n// Copyright 1997 Ed Williams. All rights reserved\n// Adapted by Romain Bazile - Ocean Trotter - 01-2021\n\ndecpl=4 // Dec places of minutes output\n\nellipse = {\"name\":\"WSG84\", \"a\":6378.137/1.852, \"invf\":298.257223563}\n\nfunction ComputeDistance(lat1, lon1, lat2, lon2){\n var d,crs12,crs21\n var argacos\n var a,invf\n \n // lat and lon in radian\n lat1=(Math.PI/180)*lat1\n lat2=(Math.PI/180)*lat2\n lon1=(Math.PI/180)*lon1\n lon2=(Math.PI/180)*lon2\n \n //alert(\"lat1=\" + lat1 + \"lon1=\" + lon1 +\"\\nlat2=\" +lat2+ \"lon2=\"+lon2)\n \n /* get distance conversion factor */\n dc=1.852 //km\n //alert(\"dc=\" +dc)\n \n //showProps(ellipse,\"ellipse\")\n \n // elliptic code\n d=crsdist_ell(lat1,-lon1,lat2,-lon2,ellipse) // ellipse uses East negative\n d=d*dc // go to physical units\n \n //alert(\"d=\"+d+\" crs12=\"+crs12+\" crs21=\"+crs21)\n return d\n}\n\nfunction crsdist(lat1,lon1,lat2,lon2){ // radian args\n /* compute course and distance (spherical) */\n if ((lat1+lat2===0) && (Math.abs(lon1-lon2)==Math.PI) && \n (Math.abs(lat1) != (Math.PI/180)*90)){\t\n \talert(\"Course between antipodal points is undefined\")\n }\n \n d = Math.acos(Math.sin(lat1)*Math.sin(lat2)+Math.cos(lat1)*Math.cos(lat2)*Math.cos(lon1-lon2))\n return d\n}\n\nfunction crsdist_ell(glat1,glon1,glat2,glon2,ellipse){\n // glat1 initial geodetic latitude in radians N positive \n // glon1 initial geodetic longitude in radians E positive \n // glat2 final geodetic latitude in radians N positive \n // glon2 final geodetic longitude in radians E positive \n a=ellipse.a\n f=1/ellipse.invf\n //alert(\"a=\"+a+\" f=\"+f)\n var r, tu1, tu2, cu1, su1, cu2, s1, b1, f1\n var x, sx, cx, sy, cy,y, sa, c2a, cz, e, c, d\n var EPS= 0.00000000005\n var faz, baz, s\n var iter=1\n var MAXITER=100\n if ((glat1+glat2===0) && (Math.abs(glon1-glon2)==Math.PI)){\n alert(\"Course and distance between antipodal points is undefined\")\n glat1=glat1+0.00001 // allow algorithm to complete\n }\n if (glat1==glat2 && (glon1==glon2 || Math.abs(Math.abs(glon1-glon2)-2*Math.PI) < EPS)){\n alert(\"Points 1 and 2 are identical- course undefined\")\n out=new MakeArray(0)\n out.d=0\n out.crs12=0\n out.crs21=Math.PI\n return out\n }\n r = 1 - f\n tu1 = r * Math.tan (glat1)\n tu2 = r * Math.tan (glat2)\n cu1 = 1 / Math.sqrt (1 + tu1 * tu1)\n su1 = cu1 * tu1\n cu2 = 1 / Math.sqrt (1 + tu2 * tu2)\n s1 = cu1 * cu2\n b1 = s1 * tu2\n f1 = b1 * tu1\n x = glon2 - glon1\n d = x + 1 // force one pass\n while ((Math.abs(d - x) > EPS) && (iter < MAXITER))\n {\n iter=iter+1\n sx = Math.sin (x)\n // alert(\"sx=\"+sx)\n cx = Math.cos (x)\n tu1 = cu2 * sx\n tu2 = b1 - su1 * cu2 * cx\n sy = Math.sqrt(tu1 * tu1 + tu2 * tu2)\n cy = s1 * cx + f1\n y = atan2 (sy, cy)\n sa = s1 * sx / sy\n c2a = 1 - sa * sa\n cz = f1 + f1\n if (c2a > 0)\n cz = cy - cz / c2a\n e = cz * cz * 2 - 1\n c = ((-3 * c2a + 4) * f + 4) * c2a * f / 16\n d = x\n x = ((e * cy * c + cz) * sy * c + y) * sa\n x = (1 - c) * x * f + glon2 - glon1\n }\n x = Math.sqrt ((1 / (r * r) - 1) * c2a + 1)\n x +=1\n x = (x - 2) / x\n c = 1 - x\n c = (x * x / 4 + 1) / c\n d = (0.375 * x * x - 1) * x\n x = e * cy\n d = ((((sy*sy*4-3)*(1-e-e)*cz*d/6-x)*d/4+cz)*sy*d+y)*c*a*r\n if (Math.abs(iter-MAXITER)0) && (y>=0)){ out= Math.atan(y/x)}\n if ((x >0) && (y<0)) { out= Math.atan(y/x)+2*Math.PI}\n if ((x===0) && (y>0)) { out= Math.PI/2}\n if ((x===0) && (y<0)) { out= 3*Math.PI/2} \n if ((x===0) && (y===0)) {\n alert(\"atan2(0,0) undefined\")\n out= 0\n } \n return out\n}\n\nfunction showProps(obj,objName){\n var result=\"\"\n for (var i in obj){\n result +=objName + \".\" + i + \" = \" + obj[i] + \"\\n\"\n }\n alert(result)\n}\n\n\nif (msg.valid){\n msg.topic=\"sample_total_volume\"\n \n var object_lat_end = global.get(\"object_lat_end\")\n var object_lon_end = global.get(\"object_lon_end\")\n var sample_sampling_gear = global.get(\"sample_sampling_gear\")\n \n if (sample_sampling_gear.startsWith(\"net\") && sample_sampling_gear != \"net_decknet\") {\n if (!(isNaN(object_lat_end) && isNaN(object_lon_end))){\n var object_lat = global.get(\"object_lat\")\n var object_lon = global.get(\"object_lon\")\n var sample_gear_net_opening = global.get(\"sample_gear_net_opening\");\n\n distance_km = ComputeDistance(object_lat, object_lon, object_lat_end, object_lon_end)\n\n sample_total_volume = distance_km*(Math.PI*(sample_gear_net_opening/2)*(sample_gear_net_opening/2)) // liters\n sample_total_volume = Math.round(sample_total_volume + Number.EPSILON)\n msg.payload = sample_total_volume\n return msg\n }\n }\n}", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 930, + "y": 760, + "wires": [["4f6afc5a.81e454"]] + }, + { + "id": "4fb4e0ad.c417c", + "type": "ui_text", + "z": "b771c342.49603", + "group": "fc5e4e6f.5b1c8", + "order": 6, + "width": 5, + "height": 1, + "name": "Latitude", + "label": "Latitude", + "format": "{{msg.payload.lat.deg}}°{{msg.payload.lat.min}}'{{msg.payload.lat.sec}}{{msg.payload.lat.dir}}", + "layout": "col-center", + "x": 700, + "y": 1120, + "wires": [] + }, + { + "id": "8d2b5026.13e6e8", + "type": "ui_text", + "z": "b771c342.49603", + "group": "fc5e4e6f.5b1c8", + "order": 7, + "width": 5, + "height": 1, + "name": "Longitude", + "label": "Longitude", + "format": "{{msg.payload.lon.deg}}°{{msg.payload.lon.min}}'{{msg.payload.lon.sec}}{{msg.payload.lon.dir}}", + "layout": "col-center", + "x": 700, + "y": 1160, + "wires": [] + }, + { + "id": "258b4562.9f778a", + "type": "function", + "z": "b771c342.49603", + "name": "Convert DD to DMS", + "func": "function ConvertDDToDMS(D, lng){\n // from https://stackoverflow.com/a/5786281/2108279\n return {\n dir : D<0?lng?'W':'S':lng?'E':'N',\n deg : 0|(D<0?D=-D:D),\n min : 0|D%1*60,\n sec :(0|D*60%1*6000)/100\n };\n}\n\nmsg.payload = {\n \"lat\":ConvertDDToDMS(msg.payload.lat, false),\n \"lon\":ConvertDDToDMS(msg.payload.lon, true)\n};\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "x": 490, + "y": 1140, + "wires": [["4fb4e0ad.c417c", "8d2b5026.13e6e8"]] + }, + { + "id": "7c4ce5f3.62dd5c", + "type": "ui_text", + "z": "b771c342.49603", + "group": "fc5e4e6f.5b1c8", + "order": 4, + "width": 2, + "height": 1, + "name": "Speed", + "label": "Speed", + "format": "{{msg.payload}} kts", + "layout": "col-center", + "x": 690, + "y": 1200, + "wires": [] + }, + { + "id": "54e37580.fdc31c", + "type": "ui_text", + "z": "b771c342.49603", + "group": "fc5e4e6f.5b1c8", + "order": 5, + "width": 2, + "height": 1, + "name": "Direction", + "label": "Direction", + "format": "{{msg.payload.track}} °", + "layout": "col-center", + "x": 700, + "y": 1240, + "wires": [] + }, + { + "id": "cc21ca16.b92928", + "type": "function", + "z": "b771c342.49603", + "name": "GPS Mode", + "func": "switch (msg.payload.mode){\n case 1:msg.payload = \"No Fix\"; break\n case 2:msg.payload = \"2D Fix\"; break\n case 3:msg.payload = \"3D Fix\"; break\n default: msg.payload = \"No info\"\n}\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "x": 470, + "y": 1080, + "wires": [["7116e906.9f50f"]] + }, + { + "id": "4a4de52c.cf2884", + "type": "function", + "z": "b771c342.49603", + "name": "Speed conversion", + "func": "msg.payload = (0|msg.payload.speed) * 1.9438\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "x": 490, + "y": 1200, + "wires": [["7c4ce5f3.62dd5c"]] + }, + { + "id": "35ad311f.344c76", + "type": "ui_text", + "z": "b771c342.49603", + "group": "fc5e4e6f.5b1c8", + "order": 2, + "width": 5, + "height": 1, + "name": "Time", + "label": "Time", + "format": "{{msg.payload.time}}", + "layout": "col-center", + "x": 690, + "y": 1280, + "wires": [] + }, + { + "id": "e73fd87d.d24e4", + "type": "function", + "z": "b771c342.49603", + "name": "get acq_minimum_mesh", + "func": "msg.payload = msg.payload.acq_minimum_mesh;\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 330, + "y": 360, + "wires": [["1aad56b31b5647ce"]] + }, + { + "id": "489c8e06.cc7d6", + "type": "function", + "z": "b771c342.49603", + "name": "get acq_maximum_mesh", + "func": "msg.payload = msg.payload.acq_maximum_mesh;\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 330, + "y": 400, + "wires": [["10eb31a2d7a6590c"]] + }, + { + "id": "73c4a14a.9b93c8", + "type": "function", + "z": "b771c342.49603", + "name": "Convert time", + "func": "msg.payload.time = msg.payload.time.replace('T', ' ');\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 470, + "y": 1280, + "wires": [["35ad311f.344c76"]] + }, + { + "id": "58de1340.3cc354", + "type": "ui_text_input", + "z": "b771c342.49603", + "name": "sample_dilution_factor", + "label": "Concentration Factor", + "tooltip": "0.5 if diluted by two; 2 if concentrated by a factor 2", + "group": "3e1ba03d.f01d8", + "order": 13, + "width": 10, + "height": 1, + "passthru": true, + "mode": "number", + "delay": "300", + "topic": "sample_dilution_factor", + "sendOnBlur": true, + "className": "", + "topicType": "str", + "x": 640, + "y": 480, + "wires": [["9f501f49.45645"]] + }, + { + "id": "4f6afc5a.81e454", + "type": "ui_text_input", + "z": "b771c342.49603", + "name": "sample_total_volume", + "label": "Filtered volume (in L)", + "tooltip": "Calculated or hand filled", + "group": "3e1ba03d.f01d8", + "order": 11, + "width": 0, + "height": 0, + "passthru": true, + "mode": "text", + "delay": "300", + "topic": "sample_total_volume", + "sendOnBlur": true, + "className": "", + "topicType": "str", + "x": 1220, + "y": 760, + "wires": [["e1f2f6eb.fe1dd"]] + }, + { + "id": "e1f2f6eb.fe1dd", + "type": "function", + "z": "b771c342.49603", + "name": "set global", + "func": "global.set(msg.topic,msg.payload);", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "x": 1420, + "y": 760, + "wires": [[]] + }, + { + "id": "e9bc112c.eb75f8", + "type": "function", + "z": "b771c342.49603", + "name": "Calculate volume", + "func": "if (msg.topic == \"sample_total_flowmeter_start\"){\n context.set(\"sample_total_flowmeter_start\", msg.payload);\n}\nif (msg.topic == \"sample_total_flowmeter_end\"){\n context.set(\"sample_total_flowmeter_end\", msg.payload);\n}\n\nif (context.keys().length == 2){\n sample_total_volume = context.get(\"sample_total_flowmeter_end\") - context.get(\"sample_total_flowmeter_start\");\n msg.topic=\"sample_total_volume\"\n msg.payload=sample_total_volume\n return msg\n}\n", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "x": 1610, + "y": 240, + "wires": [["4f6afc5a.81e454"]] + }, + { + "id": "cdd4181922eecf11", + "type": "ui_text_input", + "z": "b771c342.49603", + "name": "sample_speed_through_water", + "label": "Speed Through Water (kts)", + "tooltip": "in knots", + "group": "cf5d9f0e.d57e7", + "order": 2, + "width": 10, + "height": 1, + "passthru": true, + "mode": "number", + "delay": "300", + "topic": "sample_speed_through_water", + "sendOnBlur": true, + "className": "", + "topicType": "str", + "x": 610, + "y": 520, + "wires": [["9f501f49.45645"]] + }, + { + "id": "1aad56b31b5647ce", + "type": "ui_text_input", + "z": "b771c342.49603", + "name": "acq_minimum_mesh", + "label": "Minimal fraction size (μm)", + "tooltip": "Net mesh pore size or minimal filtration mesh pore size", + "group": "3e1ba03d.f01d8", + "order": 7, + "width": 5, + "height": 1, + "passthru": true, + "mode": "number", + "delay": "300", + "topic": "acq_minimum_mesh", + "topicType": "str", + "x": 640, + "y": 360, + "wires": [["9f501f49.45645"]] + }, + { + "id": "10eb31a2d7a6590c", + "type": "ui_text_input", + "z": "b771c342.49603", + "name": "acq_maximum_mesh", + "label": "Maximal fraction size (μm)", + "tooltip": "Maximal filtration mesh pore size", + "group": "3e1ba03d.f01d8", + "order": 8, + "width": 5, + "height": 1, + "passthru": true, + "mode": "number", + "delay": "300", + "topic": "acq_maximum_mesh", + "topicType": "str", + "x": 640, + "y": 400, + "wires": [["9f501f49.45645"]] + }, + { + "id": "3ac7b631f5d8ef90", + "type": "function", + "z": "b771c342.49603", + "name": "Culture check", + "func": "var activation_msg = {}\nvar date_msg = {}\nvar timestamp=new Date().toISOString();\n\nif (msg.payload === \"culture\"){\n activation_msg.payload = {\"group\":{\"show\":[\"Sample_Culture_Date_and_Time\"],\"hide\":[\"Sample_Sample_Location\", \"Sample_Net_Metadata\"]}};\n global.set(\"object_lat\", \"-90.0000\")\n global.set(\"object_lon\", \"0.0000\")\n date_msg.payload = {\"object_date\": timestamp.split('T')[0],\n \"object_time\": timestamp.split('T')[1].split('.')[0]}\n return [activation_msg, date_msg];\n}\nelse if (msg.payload === \"test\"){\n activation_msg.payload = {\"group\":{\"hide\":[\"Sample_Culture_Date_and_Time\", \"Sample_Sample_Location\", \"Sample_Net_Metadata\"]}};\n global.set(\"object_lat\", \"-90.0000\")\n global.set(\"object_lon\", \"0.0000\")\n global.set(\"object_date\", timestamp.split('T')[0])\n global.set(\"object_time\", timestamp.split('T')[1].split('.')[0])\n return [activation_msg, null];\n}\nelse{\n return [null, null]\n}\n\n", + "outputs": 2, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 1100, + "y": 320, + "wires": [["cbb123ab.fd3428"], ["05c6aff2afbd69cf"]], + "outputLabels": ["decknet activation", ""] + }, + { + "id": "05c6aff2afbd69cf", + "type": "ui_form", + "z": "b771c342.49603", + "name": "culture_timestamp", + "label": "Culture timestamp", + "group": "7bc0a4c416e4545c", + "order": 1, + "width": 0, + "height": 0, + "options": [ + { + "label": "Date (YYYY-MM-DD, UTC)", + "value": "object_date", + "type": "text", + "required": true, + "rows": null + }, + { + "label": "Time (HH:MM(:SS), UTC 24h)", + "value": "object_time", + "type": "text", + "required": true, + "rows": null + } + ], + "formValue": { + "object_date": "", + "object_time": "" + }, + "payload": "", + "submit": "Validate", + "cancel": "Reset", + "topic": "culture_timestamp", + "topicType": "str", + "splitLayout": false, + "className": "", + "x": 650, + "y": 700, + "wires": [["14658615.47c862", "38616e738f4f615b"]] + }, + { + "id": "3318a1aaa70fc2ee", + "type": "change", + "z": "b771c342.49603", + "name": "Repopulate input fields", + "rules": [ + { + "t": "set", + "p": "payload", + "pt": "msg", + "to": "payload", + "tot": "msg" + } + ], + "action": "", + "property": "", + "from": "", + "to": "", + "reg": false, + "x": 400, + "y": 580, + "wires": [["c33f1124.af6688"]] + }, + { + "id": "cc67c97f55a340d3", + "type": "change", + "z": "b771c342.49603", + "name": "Repopulate input fields", + "rules": [ + { + "t": "set", + "p": "payload", + "pt": "msg", + "to": "payload", + "tot": "msg" + } + ], + "action": "", + "property": "", + "from": "", + "to": "", + "reg": false, + "x": 400, + "y": 620, + "wires": [["358908cd.416ab"]] + }, + { + "id": "9c8f370d124a55e4", + "type": "change", + "z": "b771c342.49603", + "name": "Repopulate input fields", + "rules": [ + { + "t": "set", + "p": "payload", + "pt": "msg", + "to": "payload", + "tot": "msg" + } + ], + "action": "", + "property": "", + "from": "", + "to": "", + "reg": false, + "x": 400, + "y": 660, + "wires": [["56d40584.eff4e4"]] + }, + { + "id": "38616e738f4f615b", + "type": "change", + "z": "b771c342.49603", + "name": "Repopulate input fields", + "rules": [ + { + "t": "set", + "p": "payload", + "pt": "msg", + "to": "payload", + "tot": "msg" + } + ], + "action": "", + "property": "", + "from": "", + "to": "", + "reg": false, + "x": 400, + "y": 700, + "wires": [["05c6aff2afbd69cf"]] + }, + { + "id": "577be9c22c739ca0", + "type": "inject", + "z": "b771c342.49603", + "name": "", + "props": [ + { + "p": "payload" + } + ], + "repeat": "", + "crontab": "", + "once": true, + "onceDelay": 0.1, + "topic": "", + "payload": "1", + "payloadType": "num", + "x": 270, + "y": 480, + "wires": [["58de1340.3cc354"]] + }, + { + "id": "6a84252a.d52a0c", + "type": "ui_template", + "z": "bccd1f23.87219", + "group": "833bc5bb.217ba8", + "name": "Stream Pi Camera", + "order": 1, + "width": 18, + "height": 14, + "format": "
\n \"If\n
", + "storeOutMessages": true, + "fwdInMessages": true, + "resendOnRefresh": false, + "templateScope": "local", + "className": "", + "x": 610, + "y": 40, + "wires": [[]] + }, + { + "id": "dc48dc42.98d18", + "type": "function", + "z": "bccd1f23.87219", + "name": "set global", + "func": "global.set(msg.topic,msg.payload);", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "x": 880, + "y": 440, + "wires": [[]] + }, + { + "id": "811cd88c.daf528", + "type": "ui_button", + "z": "bccd1f23.87219", + "name": "down", + "group": "fbd92986.1028c8", + "order": 6, + "width": 4, + "height": 1, + "passthru": true, + "label": "", + "tooltip": "", + "color": "", + "bgcolor": "", + "icon": "fa-angle-double-down fa-3x", + "payload": "DOWN", + "payloadType": "str", + "topic": "actuator/focus", + "x": 550, + "y": 800, + "wires": [["65ad39d.b6d4d48"]] + }, + { + "id": "edda4df4.76de2", + "type": "ui_button", + "z": "bccd1f23.87219", + "name": "up", + "group": "fbd92986.1028c8", + "order": 3, + "width": 4, + "height": 1, + "passthru": false, + "label": "", + "tooltip": "", + "color": "", + "bgcolor": "", + "icon": "fa-angle-double-up fa-3x", + "payload": "UP", + "payloadType": "str", + "topic": "actuator/focus", + "x": 550, + "y": 760, + "wires": [["65ad39d.b6d4d48"]] + }, + { + "id": "68962547.34a67c", + "type": "ui_text_input", + "z": "bccd1f23.87219", + "name": "pump_manual_volume", + "label": "Volume to pass (ml)", + "tooltip": "Tiny values are accepted down to 0.001mL", + "group": "707d9797.c8e798", + "order": 3, + "width": 2, + "height": 1, + "passthru": true, + "mode": "text", + "delay": "300", + "topic": "pump_manual_volume", + "sendOnBlur": true, + "className": "", + "topicType": "str", + "x": 600, + "y": 420, + "wires": [["dc48dc42.98d18"]] + }, + { + "id": "6c792043.b6ff9", + "type": "ui_ui_control", + "z": "bccd1f23.87219", + "name": "", + "events": "change", + "x": 560, + "y": 1140, + "wires": [[]] + }, + { + "id": "902429eb.ceacb8", + "type": "ui_toast", + "z": "bccd1f23.87219", + "position": "dialog", + "displayTime": "3", + "highlight": "", + "sendall": true, + "outputs": 1, + "ok": "OK", + "cancel": "", + "raw": false, + "topic": "", + "name": "", + "x": 570, + "y": 1220, + "wires": [[]] + }, + { + "id": "fe840e05.b46f3", + "type": "function", + "z": "bccd1f23.87219", + "name": "Check form", + "func": "var acq_fnumber_objective= global.get(\"acq_fnumber_objective\");\n\nif (acq_fnumber_objective === undefined || acq_fnumber_objective === \"\") {\n msg.topic = \"Missing entry :\";\n msg.payload = \"Focal Length of the objective\";\n return [null, msg];\n}\n\nmsg.topic = \"Change Tab\";\nmsg.payload={\"tab\":\"Fluidic Acquisition\"};\nreturn [msg, null];", + "outputs": 2, + "noerr": 0, + "initialize": "", + "finalize": "", + "x": 330, + "y": 1180, + "wires": [["6c792043.b6ff9", "326a1d95.ca21aa"], ["902429eb.ceacb8"]], + "outputLabels": ["message", "error"] + }, + { + "id": "5846b1d4.7971b", + "type": "ui_button", + "z": "bccd1f23.87219", + "name": "Backward", + "group": "707d9797.c8e798", + "order": 2, + "width": 1, + "height": 1, + "passthru": false, + "label": "", + "tooltip": "", + "color": "", + "bgcolor": "", + "icon": "fa-rotate-left fa-2x", + "payload": "BACKWARD", + "payloadType": "str", + "topic": "actuator/pump", + "x": 560, + "y": 280, + "wires": [["3cb96380.e575ec"]] + }, + { + "id": "2cab680b.baf888", + "type": "ui_button", + "z": "bccd1f23.87219", + "name": "Forward", + "group": "707d9797.c8e798", + "order": 4, + "width": 1, + "height": 1, + "passthru": true, + "label": "", + "tooltip": "", + "color": "", + "bgcolor": "", + "icon": "fa-rotate-right fa-2x", + "payload": "FORWARD", + "payloadType": "str", + "topic": "actuator/pump", + "x": 560, + "y": 320, + "wires": [["3cb96380.e575ec"]] + }, + { + "id": "8038414a.34461", + "type": "function", + "z": "bccd1f23.87219", + "name": "Calculate optics", + "func": "var acq_fnumber_objective = String(global.get(\"acq_fnumber_objective\"));\nvar acq_camera = global.get(\"acq_camera\")\n\n// Those values needs to be recalculated, they are not good!\nif (acq_camera == \"HQ Camera\"){\n switch(acq_fnumber_objective) {\n case \"25\":\n acq_magnification= 0.6;\n process_pixel= 1.56;\n sug_min= 60;\n sug_max= 670;\n sug_flowrate= 3;\n break;\n case \"16\":\n acq_magnification= 1.6;\n process_pixel= 1.01;\n sug_min= 40;\n sug_max= 430;\n sug_flowrate= 2.4;\n break;\n case \"12\":\n acq_magnification= 1.20;\n process_pixel= 0.79;\n sug_min= 30;\n sug_max= 340;\n sug_flowrate= 1.25;\n break;\n case \"8\":\n acq_magnification= 1.78;\n process_pixel= 0.53;\n sug_min= 20;\n sug_max= 230;\n sug_flowrate= 0.42;\n break;\n case \"6\":\n acq_magnification= 2.36;\n process_pixel= 0.41;\n sug_min= 15;\n sug_max= 170;\n sug_flowrate= 0.32;\n break;\n }\n}\nelse if (acq_camera == \"Camera v2.1\"){\n switch(acq_fnumber_objective) {\n case \"25\":\n acq_magnification= 0.6;\n process_pixel= 1.86;\n sug_min= 60;\n sug_max= 670;\n sug_flowrate= 3;\n break;\n case \"16\":\n acq_magnification= 1.6;\n process_pixel= 0.7;\n sug_min= 40;\n sug_max= 430;\n sug_flowrate= 2.4;\n break;\n case \"12\":\n acq_magnification= 1.20;\n process_pixel= 0.94;\n sug_min= 30;\n sug_max= 340;\n sug_flowrate= 1.25;\n break;\n case \"8\":\n acq_magnification= 1.78;\n process_pixel= 0.63;\n sug_min= 20;\n sug_max= 230;\n sug_flowrate= 0.42;\n break;\n case \"6\":\n acq_magnification= 2.36;\n process_pixel= 0.48;\n sug_min= 15;\n sug_max= 170;\n sug_flowrate= 0.32;\n break;\n }\n}else {\n acq_magnification= \"ERROR\";\n process_pixel= \"ERROR\";\n sug_min= \"ERROR\";\n sug_max= \"ERROR\";\n sug_flowrate= \"ERROR\";\n}\n\nvar process_pixel_fixed = global.get(\"process_pixel_fixed\")\n\nif (process_pixel_fixed !== undefined && process_pixel_fixed !== \"\") {\n process_pixel = process_pixel_fixed\n}\n\nglobal.set(\"process_pixel\",process_pixel);\n\nglobal.set(\"acq_magnification\",acq_magnification);\n\n\nreturn [{payload: acq_fnumber_objective}, {payload: acq_magnification}, {payload: process_pixel}, {payload: sug_min}, {payload: sug_max}];", + "outputs": 5, + "timeout": "", + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 1080, + "y": 120, + "wires": [[], [], [], [], []], + "inputLabels": ["acq_fnumber_objective"], + "outputLabels": [ + "acq_magnification", + "process_pixel", + "sug_min", + "sug_max", + "" + ] + }, + { + "id": "f61aaed5.1e64", + "type": "ui_button", + "z": "bccd1f23.87219", + "name": "", + "group": "7a0b4877.a5d268", + "order": 1, + "width": 2, + "height": 1, + "passthru": false, + "label": "Previous", + "tooltip": "", + "color": "#097479", + "bgcolor": "white", + "icon": "keyboard_return", + "payload": "{\"tab\":\"Sample\"}", + "payloadType": "json", + "topic": "", + "x": 140, + "y": 1140, + "wires": [["6c792043.b6ff9"]] + }, + { + "id": "9ba6ec0a.22c96", + "type": "ui_button", + "z": "bccd1f23.87219", + "name": "", + "group": "7a0b4877.a5d268", + "order": 2, + "width": 2, + "height": 1, + "passthru": false, + "label": "Continue", + "tooltip": "", + "color": "#097479", + "bgcolor": "white", + "icon": "keyboard_tab", + "payload": "{\"tab\":\"Home\"}", + "payloadType": "json", + "topic": "", + "x": 140, + "y": 1180, + "wires": [["fe840e05.b46f3"]] + }, + { + "id": "cbb8afed.0a026", + "type": "rpi-gpio out", + "z": "bccd1f23.87219", + "name": "LED Output", + "pin": "21", + "set": true, + "level": "0", + "freq": "", + "out": "out", + "bcm": true, + "x": 550, + "y": 120, + "wires": [] + }, + { + "id": "3cb96380.e575ec", + "type": "function", + "z": "bccd1f23.87219", + "name": "pump", + "func": "var manual_volume= global.get(\"pump_manual_volume\");\nvar flowrate= global.get(\"pump_flowrate\");\n\nif (manual_volume === undefined || manual_volume === \"\" || manual_volume === null) {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Volume to pass\";\n return [null, msg];\n}\nelse if (flowrate === undefined || flowrate === \"\" || flowrate === null) {\n msg.topic = \"Missing 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\n \n \n \n \n \n \n \n \n \n
\n

Sample

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id:

\n

project:\n

\n

ship:

\n

operator:\n

\n

sampling gear:\n

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concentrated volume:\n

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gear net opening:\n

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total volume filtered:\n

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Acquisition

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id:

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instrument:\n

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instrument id:\n

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camera:

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celltype: \n

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minimum mesh:\n

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maximum mesh:\n

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min esd: \n

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max esd: \n

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volume:

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magnification:\n

\n

fnumber objective:\n

\n

software: \n

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\n

Object

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latitude: \n

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longitude: \n

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latitude end:\n

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longitude end:\n

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date:

\n

time:

\n

date end:\n

\n

time end:\n

\n

depth min:\n

\n

depth max:\n

\n 		\n

Process

\n

pixel: \n

\n

id:

\n
\n
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\t\"description\": {\n \t\t\"sample_project\": \"Project's name\",\n \t\t\"sample_id\": \"Sample ID\",\n \t\t\"sample_uuid\": \"Sample UUID (Autogenerated)\",\n \t\t\"sample_ship\": \"Ship's name\",\n \t\t\"sample_operator\": \"Operator's name\",\n \t\t\"sample_sampling_gear\": \"Sampling gear used\",\n \t\t\"sample_concentrated_sample_volume\": \"Volume of concentrated sample, in mL\",\n \t\t\"sample_total_volume\": \"Total volume filtered by the net used, in L\",\n \t\t\"sample_dilution_factor\": \"Dilution factor of the sample, 0.5 if diluted by 2, 2 if concentrated by 2\",\n \t\t\"sample_speed_through_water\": \"Speed of the boat through water when sampling, in kts\",\n \t\t\"acq_id\": \"Acquisition ID\",\n \t\t\"acq_uuid\": \"Acquisition UUID (Autogenerated)\",\n \t\t\"acq_instrument\": \"Instrument type\",\n \t\t\"acq_instrument_id\": \"Instrument ID\",\n \t\t\"acq_celltype\": \"Flow cell dimension thickness, in µm\",\n \t\t\"acq_minimum_mesh\": \"Minimum filtration mesh size, in 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net\",\n \t},\n\t\t\"sample_project\": global.get(\"sample_project\"),\n\t\t\"sample_id\": global.get(\"sample_project\") + \"_\" + global.get(\"sample_id\"),\n\t\t\"sample_ship\": global.get(\"sample_ship\"),\n\t\t\"sample_operator\": global.get(\"sample_operator\"),\n\t\t\"sample_sampling_gear\": global.get(\"sample_sampling_gear\"),\n\t\t\"sample_concentrated_sample_volume\": global.get(\"sample_concentrated_sample_volume\"),\n\t\t\"sample_total_volume\": global.get(\"sample_total_volume\"),\n\t\t\"sample_dilution_factor\": global.get(\"sample_dilution_factor\"),\n\t\t\"sample_speed_through_water\": global.get(\"sample_speed_through_water\"),\n\n\t\t\"acq_id\": global.get(\"sample_project\") + \"_\" + global.get(\"sample_id\")+ \"_\" + global.get(\"acq_id\"),\n\t\t\"acq_instrument\": global.get(\"acq_instrument\"),\n\t\t\"acq_instrument_id\": global.get(\"acq_instrument_id\"),\n\t\t\"acq_celltype\": global.get(\"acq_celltype\"),\n\t\t\"acq_minimum_mesh\": global.get(\"acq_minimum_mesh\"),\n\t\t\"acq_maximum_mesh\": global.get(\"acq_maximum_mesh\"),\n\t\t\"acq_min_esd\": global.get(\"acq_min_esd\"),\n\t\t\"acq_max_esd\": global.get(\"acq_max_esd\"),\n\t\t\"acq_volume\": global.get(\"acq_volume\"),\n\t\t\"acq_imaged_volume\": global.get(\"acq_imaged_volume\"),\n\t\t\"acq_magnification\": global.get(\"acq_magnification\"),\n\t\t\"acq_fnumber_objective\": global.get(\"acq_fnumber_objective\"),\n\t\t\"acq_camera\": global.get(\"acq_camera\"),\n\t\t\"acq_nb_frame\": global.get(\"nb_frame\"),\n\t\t\"acq_software\": global.get(\"acq_software\"),\n\n\t\t\"object_date\": global.get(\"object_date\"),\n\t\t\"object_time\": global.get(\"object_time\"),\n\t\t\"object_lat\": global.get(\"object_lat\"),\n\t\t\"object_lon\": global.get(\"object_lon\"),\n\t\t\"object_depth_min\": global.get(\"object_depth_min\"),\n\t\t\"object_depth_max\": global.get(\"object_depth_max\"),\n\n\t\t\"process_pixel\": global.get(\"process_pixel\"),\n\t\t\"process_source\": global.get(\"process_source\"),\n\t\t\"process_commit\": global.get(\"process_commit\")\n\t}\n};\n\nif (msg.payload.config.sample_sampling_gear.startsWith(\"net\")) {\n\tmsg.payload.config[\"sample_gear_net_opening\"] = global.get(\"sample_gear_net_opening\")\n\tmsg.payload.config[\"object_date_end\"] = global.get(\"object_date_end\")\n\tmsg.payload.config[\"object_time_end\"] = global.get(\"object_time_end\")\n\tmsg.payload.config[\"object_lat_end\"] = global.get(\"object_lat_end\")\n\tmsg.payload.config[\"object_lon_end\"] = global.get(\"object_lon_end\")\n}\n\nif ( msg.send == true){\n\treturn [msg, msg]\n}\nelse{\n\treturn [msg, null]\n}", + "outputs": 2, + "timeout": "", + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 910, + "y": 440, + "wires": [["29be525e.0c87fe"], ["c3e50240.82aa58"]] + }, + { + "id": "40c12463.a1f84c", + "type": "delay", + "z": "baa1e3d9.cb29d", + "name": "", + "pauseType": "delay", + "timeout": "1", + "timeoutUnits": "seconds", + "rate": "1", + "nbRateUnits": "1", + "rateUnits": "second", + "randomFirst": "1", + "randomLast": "5", + "randomUnits": "seconds", + "drop": false, + "outputs": 1, + "x": 940, + "y": 480, + "wires": [["c3e50240.82aa58"]] + }, + { + "id": "4d1b02cb.83b51c", + "type": "ui_button", + "z": "baa1e3d9.cb29d", + "name": "", + "group": "4322c187.e73e5", + "order": 10, + "width": 5, + "height": 1, + "passthru": false, + "label": "Update config", + "tooltip": "", + "color": "", + "bgcolor": "", + "className": "", + "icon": "save", + "payload": "", + "payloadType": "str", + "topic": "imager/image", + "topicType": "str", + "x": 680, + "y": 440, + "wires": [["52ea7d01.711034"]] + }, + { + "id": "5921d0d0.a3d568", + "type": "subflow:1c24ad9c.bebec2", + "z": "baa1e3d9.cb29d", + "name": "", + "env": [], + "x": 110, + "y": 220, + "wires": [ + [ + "f3658d30.b8448", + "de2c90cf.b73b08", + "4be09c97f86897d9", + "f573206abefa9518", + "f948151ab4031df4", + "5e3dec55.881074", + "d3ca8847.4d1ae" + ] + ] + }, + { + "id": "f3658d30.b8448", + "type": "function", + "z": "baa1e3d9.cb29d", + "name": "get acq_id", + "func": "msg.payload = msg.payload.acq_id;\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "x": 330, + "y": 240, + "wires": [["6b34c456.83178c"]] + }, + { + "id": "de2c90cf.b73b08", + "type": "function", + "z": "baa1e3d9.cb29d", + "name": "get acq_celltype", + "func": "msg.topic = 'acq_celltype';\nmsg.payload = msg.payload.acq_celltype;\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 340, + "y": 80, + "wires": [["cc0ca68b.4263a8"]] + }, + { + "id": "5e3dec55.881074", + "type": "function", + "z": "baa1e3d9.cb29d", + "name": "get acq_minimum_mesh", + "func": "msg.payload = msg.payload.acq_minimum_mesh;\nreturn msg;", + "outputs": 1, + "noerr": 0, + "x": 370, + "y": 160, + "wires": [["f59a2f0d.5e9af"]] + }, + { + "id": "d3ca8847.4d1ae", + "type": "function", + "z": "baa1e3d9.cb29d", + "name": "get acq_maximum_mesh", + "func": "msg.payload = msg.payload.acq_maximum_mesh;\nreturn msg;", + "outputs": 1, + "noerr": 0, + "x": 370, + "y": 200, + "wires": [["6008a8bb.259f08"]] + }, + { + "id": "b402f719.55bc98", + "type": "inject", + "z": "baa1e3d9.cb29d", + "name": "Default: FORWARD", + "props": [ + { + "p": "payload" + }, + { + "p": "topic", + "vt": "str" + } + ], + "repeat": "", + "crontab": "", + "once": true, + "onceDelay": 0.1, + "topic": "pump_direction", + "payload": "FORWARD", + "payloadType": "str", + "x": 220, + "y": 560, + "wires": [["bb62da8a.ebc328"]] + }, + { + "id": "6b2239f3.41fa3", + "type": "function", + "z": "baa1e3d9.cb29d", + "name": "set global", + "func": "global.set(msg.topic, msg.payload);", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "x": 660, + "y": 560, + "wires": [[]] + }, + { + "id": "51b4d0df.d70a88", + "type": "ui_text_input", + "z": "baa1e3d9.cb29d", + "name": "nb_frame", + "label": "Number of images to acquire", + "tooltip": "", + "group": "4322c187.e73e5", + "order": 2, + "width": 5, + "height": 1, + "passthru": true, + "mode": "number", + "delay": 300, + "topic": "nb_frame", + "sendOnBlur": true, + "className": "", + "topicType": "str", + "x": 680, + "y": 280, + "wires": [["fb887036.12429", "67091ac0.8f9f6c", "99b11fe4.2795d"]] + }, + { + "id": "999065ca.27edb8", + "type": "switch", + "z": "baa1e3d9.cb29d", + "name": "topic filter", + "property": "topic", + "propertyType": "msg", + "rules": [ + { + "t": "eq", + "v": "status/pump", + "vt": "str" + }, + { + "t": "eq", + "v": "status/focus", + "vt": "str" + }, + { + "t": "eq", + "v": "status/imager", + "vt": "str" + } + ], + "checkall": "true", + "repair": false, + "outputs": 3, + "x": 320, + "y": 800, + "wires": [ + ["a46a1e7f.88a92", "6742014e.1bb238"], + ["c516d9ea.f7f6e", "6742014e.1bb238"], + ["307c851e.fb0f7a", "2b9d6988.d84836"] + ] + }, + { + "id": "2b009bd7.c07004", + "type": "ui_text", + "z": "baa1e3d9.cb29d", + "group": "70de8209.68416c", + "order": 3, + "width": 10, + "height": 2, + "name": "imager", + "label": "Imager status:", + "format": "{{msg.payload.status}}", + "layout": "col-center", + "x": 770, + "y": 740, + "wires": [] + }, + { + "id": "c516d9ea.f7f6e", + "type": "ui_text", + "z": "baa1e3d9.cb29d", + "group": "70de8209.68416c", + "order": 1, + "width": 5, + "height": 1, + "name": "focus", + "label": "Focus status:", + "format": "{{msg.payload.status}}", + "layout": "col-center", + "x": 770, + "y": 700, + "wires": [] + }, + { + "id": "a46a1e7f.88a92", + "type": "ui_text", + "z": "baa1e3d9.cb29d", + "group": "70de8209.68416c", + "order": 2, + "width": 5, + "height": 1, + "name": "pump", + "label": "Pump status:", + "format": "{{msg.payload.status}}", + "layout": "col-center", + "x": 770, + "y": 660, + "wires": [] + }, + { + "id": "bb628f8d.98f108", + "type": "link in", + "z": "baa1e3d9.cb29d", + "name": "Status for fluidic module", + "links": ["58f2e0f.4e8b12"], + "x": 175, + "y": 800, + "wires": [["999065ca.27edb8"]] + }, + { + "id": "307c851e.fb0f7a", + "type": "switch", + "z": "baa1e3d9.cb29d", + "name": "Imaging state", + "property": "payload", + "propertyType": "msg", + "rules": [ + { + "t": "jsonata_exp", + "v": "$contains(msg.payload.status, \"jpg\")\t", + "vt": "jsonata" + }, + { + "t": "else" + } + ], + "checkall": "false", + "repair": false, + "outputs": 2, + "x": 540, + "y": 880, + "wires": [["db8e3dde.44efb8"], ["6742014e.1bb238"]] + }, + { + "id": "db8e3dde.44efb8", + "type": "function", + "z": "baa1e3d9.cb29d", + "name": "img_counter", + "func": "img_counter=flow.get('img_counter')\nif (img_counter === undefined || img_counter === \"\"){\n img_counter = 0\n}\nimg_counter=img_counter+1\nflow.set('img_counter',img_counter)\nmsg.payload = img_counter\nmsg.payload = (100 * img_counter/global.get('nb_frame')).toFixed(2)\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 770, + "y": 860, + "wires": [["1a2e721a.f5e876"]] + }, + { + "id": "59164d65.e7993c", + "type": "ui_toast", + "z": "baa1e3d9.cb29d", + "position": "top right", + "displayTime": "5", + "highlight": "", + "sendall": true, + "outputs": 0, + "ok": "OK", + "cancel": "", + "raw": false, + "topic": "", + "name": "", + "x": 1260, + "y": 900, + "wires": [] + }, + { + "id": "8c7348aa.1962e8", + "type": "template", + "z": "baa1e3d9.cb29d", + "name": "Create sentence", + "field": "payload", + "fieldType": "msg", + "format": "handlebars", + "syntax": "mustache", + "template": "The {{topic}} is {{payload.status}}", + "output": "str", + "x": 1050, + "y": 900, + "wires": [["59164d65.e7993c"]] + }, + { + "id": "6742014e.1bb238", + "type": "change", + "z": "baa1e3d9.cb29d", + "name": "Remove high-level topic", + "rules": [ + { + "t": "change", + "p": "topic", + "pt": "msg", + "from": "status/", + "fromt": "str", "to": "", - "reg": false, - "x": 210, - "y": 240, - "wires": [ - [ - "833dac7cbd693c53" - ] - ] - }, - { - "id": "833dac7cbd693c53", - "type": "exec", - "z": "1eaf21c8.f7a21e", - "command": "cp", - "addpay": "payload", - "append": "/home/pi/PlanktoScope/hardware.json", - "useSpawn": "false", - "timer": "", - "winHide": false, - "oldrc": false, - "name": "Copy default hardware config", - "x": 500, - "y": 240, - "wires": [ - [ - "0b67ccf37c034e90" - ], - [], - [] - ] - }, - { - "id": "0b67ccf37c034e90", - "type": "delay", - "z": "1eaf21c8.f7a21e", - "name": "", - "pauseType": "delay", - "timeout": "500", - "timeoutUnits": "milliseconds", - "rate": "1", - "nbRateUnits": "1", - "rateUnits": "second", - "randomFirst": "1", - "randomLast": "5", - "randomUnits": "seconds", - "drop": false, - "allowrate": false, - "outputs": 1, - "x": 730, - "y": 240, - "wires": [ - [ - "da3d4a90384d62a8", - "e4ead350b3d07578" - ] - ] - }, - { - "id": "2716aa5b3d027f95", - "type": "change", - "z": "1eaf21c8.f7a21e", - "name": "Get acq_instrument", - "rules": [ - { - "t": "set", - "p": "payload", - "pt": "msg", - "to": "payload.acq_instrument", - "tot": "msg" - }, - { - "t": "set", - "p": "topic", - "pt": "msg", - "to": "acq_instrument", - "tot": "str" - } - ], - "action": "", - "property": "", - "from": "", + "tot": "str" + } + ], + "action": "", + "property": "", + "from": "", + "to": "", + "reg": false, + "x": 810, + "y": 900, + "wires": [["8c7348aa.1962e8"]] + }, + { + "id": "1a2e721a.f5e876", + "type": "ui_gauge", + "z": "baa1e3d9.cb29d", + "name": "progress donut", + "group": "b5d61bc7.54fe48", + "order": 3, + "width": 6, + "height": 3, + "gtype": "donut", + "title": "", + "label": "%", + "format": "{{value}}", + "min": 0, + "max": "100", + "colors": ["#ffa83f", "#e6ff02", "#00dfe9"], + "seg1": "50", + "seg2": "75", + "x": 1260, + "y": 860, + "wires": [] + }, + { + "id": "9bd72495.a8a098", + "type": "ui_text", + "z": "baa1e3d9.cb29d", + "group": "4322c187.e73e5", + "order": 5, + "width": 5, + "height": 1, + "name": "Total imaged volume", + "label": "Total imaged volume", + "format": "{{msg.payload}}", + "layout": "col-center", + "x": 1200, + "y": 140, + "wires": [] + }, + { + "id": "99b11fe4.2795d", + "type": "function", + "z": "baa1e3d9.cb29d", + "name": "imaged volume calc", + "func": "camera = global.get(\"acq_camera\");\ncell = global.get(\"acq_celltype\");\nnb_frame = global.get(\"nb_frame\");\nprocess_pixel = global.get(\"process_pixel\");\n\nvar volume = 0\nif (camera == \"HQ Camera\"){\n volume = nb_frame * (process_pixel*4056*process_pixel*3040*cell/1000000000) / 1000;\n}\nelse if (camera == \"Camera v2.1\"){\n volume = nb_frame * (process_pixel*3280*process_pixel*2464*cell/1000000000) / 1000;\n}\nelse{\n msg.payload = \"The camera is not known to this system\";\n return msg;\n}\n\nglobal.set(\"acq_imaged_volume\", volume.toFixed(4))\n\nmsg.payload = volume.toFixed(2) + \" mL\"\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 960, + "y": 140, + "wires": [["9bd72495.a8a098"]], + "info": "### Focusing\n##### focus.py `nb_step` `orientation`\n\n- `nb_step` : **integer** (from 1 to 100000) - number of step to perform by the stage (about 31um/step)\n- `orientation` : **string** - orientation of the focus either `up` or `down`\n\nExample:\n\n python3.7 $HOME/PlanktoScope/scripts/focus.py 650 up\n" + }, + { + "id": "8e16aa2f.e40398", + "type": "ui_text", + "z": "baa1e3d9.cb29d", + "group": "4322c187.e73e5", + "order": 7, + "width": 5, + "height": 1, + "name": "Total pumped volume", + "label": "Total pumped volume", + "format": "{{msg.payload}} mL", + "layout": "col-center", + "x": 1200, + "y": 300, + "wires": [] + }, + { + "id": "67091ac0.8f9f6c", + "type": "function", + "z": "baa1e3d9.cb29d", + "name": "acq_volume calc", + "func": "var imaging_pump_volume = global.get(\"imaging_pump_volume\");\nvar nb_frame = global.get(\"nb_frame\");\nvar acq_volume = 0\n\nacq_volume = (Number(nb_frame)*Number(imaging_pump_volume)).toFixed(2)\nglobal.set(\"acq_volume\", acq_volume)\n\nmsg.payload = acq_volume\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "x": 950, + "y": 300, + "wires": [["8e16aa2f.e40398"]], + "info": "### Focusing\n##### focus.py `nb_step` `orientation`\n\n- `nb_step` : **integer** (from 1 to 100000) - number of step to perform by the stage (about 31um/step)\n- `orientation` : **string** - orientation of the focus either `up` or `down`\n\nExample:\n\n python3.7 $HOME/PlanktoScope/scripts/focus.py 650 up\n" + }, + { + "id": "2b9d6988.d84836", + "type": "switch", + "z": "baa1e3d9.cb29d", + "name": "", + "property": "payload", + "propertyType": "msg", + "rules": [ + { + "t": "hask", + "v": "status", + "vt": "str" + }, + { + "t": "hask", + "v": "camera_name", + "vt": "str" + } + ], + "checkall": "true", + "repair": false, + "outputs": 2, + "x": 650, + "y": 760, + "wires": [["2b009bd7.c07004"], ["3bbb756a.84190a"]] + }, + { + "id": "3bbb756a.84190a", + "type": "function", + "z": "baa1e3d9.cb29d", + "name": "set camera name", + "func": "global.set(\"acq_camera\", msg.payload.camera_name);\n\nmsg.payload = msg.payload.camera_name;\n\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "x": 810, + "y": 780, + "wires": [["559a8085.1d6b9"]] + }, + { + "id": "559a8085.1d6b9", + "type": "link out", + "z": "baa1e3d9.cb29d", + "name": "Camera Name", + "links": ["30067f35.532f2", "572a6daa.6004c4"], + "x": 965, + "y": 780, + "wires": [] + }, + { + "id": "49ea1123.ee1768", + "type": "ui_numeric", + "z": "baa1e3d9.cb29d", + "name": "sleep_before", + "label": "Delay to stabilize image (s)", + "tooltip": "Happens before every capture", + "group": "4322c187.e73e5", + "order": 4, + "width": 5, + "height": 1, + "wrap": false, + "passthru": true, + "topic": "sleep_before", + "topicType": "str", + "format": "{{value}}", + "min": "0.1", + "max": "5", + "step": "0.1", + "className": "", + "x": 670, + "y": 120, + "wires": [["fb887036.12429"]] + }, + { + "id": "572a6daa.6004c4", + "type": "link in", + "z": "baa1e3d9.cb29d", + "name": "", + "links": ["559a8085.1d6b9"], + "x": 795, + "y": 140, + "wires": [["99b11fe4.2795d"]] + }, + { + "id": "8032ea50.1b57f", + "type": "ui_template", + "z": "baa1e3d9.cb29d", + "group": "b5d61bc7.54fe48", + "name": "progress header", + "order": 1, + "width": 0, + "height": 0, + "format": "

Capture progress

", + "storeOutMessages": false, + "fwdInMessages": false, + "resendOnRefresh": false, + "templateScope": "local", + "x": 1260, + "y": 820, + "wires": [[]] + }, + { + "id": "a4abb1ae.2ae418", + "type": "subflow:1c24ad9c.bebec2", + "z": "baa1e3d9.cb29d", + "name": "", + "env": [], + "x": 930, + "y": 520, + "wires": [[]] + }, + { + "id": "4be09c97f86897d9", + "type": "function", + "z": "baa1e3d9.cb29d", + "name": "get nb_frame", + "func": "msg.payload = msg.payload.nb_frame;\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 330, + "y": 280, + "wires": [["51b4d0df.d70a88"]] + }, + { + "id": "f573206abefa9518", + "type": "function", + "z": "baa1e3d9.cb29d", + "name": "get imaging_pump_volume", + "func": "msg.payload = msg.payload.imaging_pump_volume;\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 380, + "y": 320, + "wires": [["e1acc6c599033114"]] + }, + { + "id": "f948151ab4031df4", + "type": "function", + "z": "baa1e3d9.cb29d", + "name": "get sleep_before", + "func": "msg.payload = msg.payload.sleep_before;\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 340, + "y": 120, + "wires": [["49ea1123.ee1768"]] + }, + { + "id": "ad153212312f0347", + "type": "ui_ui_control", + "z": "baa1e3d9.cb29d", + "name": "onTab", + "events": "all", + "x": 330, + "y": 380, + "wires": [["9b69ea945b587192"]] + }, + { + "id": "9b69ea945b587192", + "type": "function", + "z": "baa1e3d9.cb29d", + "name": "check tab", + "func": "if (msg.name == \"Fluidic Acquisition\"){\n return { \"topic\": \"imager/ image\" }\n}", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 480, + "y": 380, + "wires": [["52ea7d01.711034"]], + "outputLabels": ["interface"] + }, + { + "id": "e1acc6c599033114", + "type": "ui_text_input", + "z": "baa1e3d9.cb29d", + "name": "imaging_pump_volume", + "label": 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The segmentation is run recursively in all folders. So if you select a top level folder, the segmentation will be run in all subfolders.\n
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\n Latest object segmented:
\n \"If\n
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\n\n
", + "storeOutMessages": true, + "fwdInMessages": true, + "resendOnRefresh": false, + "templateScope": "local", + "className": "", + "x": 400, + "y": 100, + "wires": [[]] + }, + { + "id": "4f02c726.de69b8", + "type": "ui_button", + "z": "9daf9e2b.019fc", + "name": "", + "group": "a7d64879.38298", + "order": 4, + "width": 6, + "height": 1, + "passthru": false, + "label": "Reboot", + "tooltip": "", + "color": "", + "bgcolor": "#AD1625", + "className": "", + "icon": "fa-repeat fa-2x", + "payload": "reboot", + "payloadType": "str", + "topic": "reboot", + "topicType": "str", + "x": 160, + "y": 240, + "wires": [["4af9112d.87767"]] + }, + { + "id": "611a8b1c.a829b4", + "type": "exec", + "z": "9daf9e2b.019fc", + "command": "sudo", + "addpay": "payload", + "append": "now", + "useSpawn": "false", + "timer": "2", + "winHide": false, + "oldrc": false, + "name": "sudo cmd now", + "x": 480, + "y": 280, + "wires": [[], [], []] + }, + { + "id": "bc76c4d6.a7ad28", + "type": "ui_button", + "z": 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\n The PlanktoScope software application consists of three components: a Node-RED dashboard which provides the user interface you're using; a Hardware Controller\n which executes commands sent from the Node-RED dashboard for hardware control and image acquisition; and a Segmenter which processes an acquired dataset of\n images and isolates objects from those images. Each component has its own independent log of messages, managed separately from the logs for the other components.\n

\n

\n All three components have live-updating logs which you can monitor. Additionally, the Hardware Controller and the Segmenter also save all of their log messages\n to files which you can browse and download. Those software components create a new log file each time they start, and the name of the log file includes the time\n in the PlanktoScope's clock when the software component started. However, if your PlanktoScope's clock is usually wrong, it makes the log files difficult to navigate.\n This will be fixed in a future version of the software.\n

\n

\n If you need to share your logs with other people (e.g. on Slack or GitHub), you should open the \"Downloadable Logs\" links, and then you can select one file or multiple\n log files for downloading as a zip archive.\n

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"append": "", + "useSpawn": "", + "timer": "", + "name": "RPi Temp.", + "x": 330, + "y": 40, + "wires": [["bc503fa5.f46dd"], [], []] + }, + { + "id": "3910d662.fa1f7a", + "type": "exec", + "z": "1371dec5.76e671", + "command": "df -h | grep /dev/root | awk -F ' ' '{print $5}' | tr -d % | tr \"\\n$\" \"\\ \" | sed 's/,/./' | tr -d \" \"", + "addpay": false, + "append": "", + "useSpawn": "", + "timer": "", + "name": "Disk Usage", + "x": 330, + "y": 120, + "wires": [["eaf74a43.fa27d"], [], []] + }, + { + "id": "1cd5b4c0.46af9b", + "type": "inject", + "z": "1371dec5.76e671", + "name": "update: 5s", + "props": [ + { + "p": "payload" + }, + { + "p": "topic", + "vt": "str" + } + ], + "repeat": "5", + "crontab": "", + "once": false, + "onceDelay": "", + "topic": "", + "payload": "", + "payloadType": "date", + "x": 110, + "y": 160, + "wires": [ + [ + "3910d662.fa1f7a", + "ddcbbfa5.cd158", + "23a84a3856fb68bd", + "4ed64bd91fa9fbdf", + "ed5f2d963d85478b" + ] + ] + }, + { + "id": "2549f778.4eb828", 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"1371dec5.76e671", + "name": "", + "property": "payload", + "propertyType": "msg", + "rules": [ + { + "t": "gt", + "v": "40", + "vt": "num" + }, + { + "t": "lte", + "v": "35", + "vt": "num" + } + ], + "checkall": "true", + "repair": false, + "outputs": 2, + "x": 570, + "y": 40, + "wires": [["a25d6486.e1ce28"], ["5d4f3e71.1bad4"]] + }, + { + "id": "5d4f3e71.1bad4", + "type": "change", + "z": "1371dec5.76e671", + "name": "Set OFF", + "rules": [ + { + "t": "set", + "p": "payload", + "pt": "msg", + "to": "off", + "tot": "str" + } + ], + "action": "", + "property": "", + "from": "", + "to": "", + "reg": false, + "x": 720, + "y": 60, + "wires": [["7fb13a4a53b612a0"]] + }, + { + "id": "a25d6486.e1ce28", + "type": "change", + "z": "1371dec5.76e671", + "name": "Set ON", + "rules": [ + { + "t": "set", + "p": "payload", + "pt": "msg", + "to": "on", + "tot": "str" + } + ], + "action": "", + "property": "", + "from": "", + "to": "", + "reg": false, + "x": 720, + "y": 20, + "wires": [["7fb13a4a53b612a0"]] + }, + { + "id": "569154a.b53182c", + "type": "inject", + "z": "1371dec5.76e671", + "name": "once", + "props": [ + { + "p": "payload" + } + ], + "repeat": "", + "crontab": "", + "once": true, + "onceDelay": "", + "topic": "", + "payload": "start", + "payloadType": "str", + "x": 170, + "y": 680, + "wires": [["ccb5172d10c1ccaf"]] + }, + { + "id": "4828d2f4.7c712c", + "type": "function", + "z": "1371dec5.76e671", + "name": "set global", + "func": "global.set(\"acq_instrument_id\",msg.payload);\n", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 580, + "y": 700, + "wires": [[]] + }, + { + "id": "e2f39a35.f57298", + "type": "subflow:1c24ad9c.bebec2", + "z": "1371dec5.76e671", + "name": "", + "env": [], + "x": 170, + "y": 620, + "wires": [["950b773ad4c0fdfe"]] + }, + { + "id": "3e64877a.9684b", + "type": "function", + "z": "1371dec5.76e671", + "name": "set global", + "func": "global.set(\"acq_software\", \"PlanktoScope \" + msg.payload);\n", + "outputs": 1, + "timeout": "", + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 820, + "y": 500, + "wires": [[]] + }, + { + "id": "bdc6718a.dd5d48", + "type": "ui_text", + "z": "1371dec5.76e671", + "group": "ce9e278.781eed8", + "order": 2, + "width": 0, + "height": 0, + "name": "", + "label": "Instrument Type", + "format": "{{msg.payload}}", + "layout": "row-spread", + "className": "", + "style": false, + "font": "", + "fontSize": "", + "color": "#000000", + "x": 600, + "y": 620, + "wires": [] + }, + { + "id": "a400a97e.e333a8", + "type": "ui_text", + "z": "1371dec5.76e671", + "group": "ce9e278.781eed8", + "order": 1, + "width": 0, + "height": 0, + "name": "", + "label": "Instrument Name", + "format": "{{msg.payload}}", + "layout": "row-spread", + "className": "", + "style": false, + "font": "", + "fontSize": "", + "color": "#000000", + "x": 610, + "y": 660, + "wires": [] + }, + { + "id": "8343fa69.49339", + "type": "ui_text", + "z": "1371dec5.76e671", + "group": "ce9e278.781eed8", + "order": 3, + "width": 0, + "height": 0, + "name": "", + "label": "Software Version", + "format": "{{msg.payload}}", + "layout": "row-spread", + "className": "", + "style": false, + "font": "", + "fontSize": "", + "color": "#000000", + "x": 850, + "y": 540, + "wires": [] + }, + { + "id": "f783aefd.c3bfd8", + "type": "ui_text", + "z": "1371dec5.76e671", + "group": "ce9e278.781eed8", + "order": 4, + "width": 0, + "height": 0, + "name": "", + "label": "Camera Name", + "format": "{{msg.payload}}", + "layout": "row-spread", + "x": 600, + "y": 740, + "wires": [] + }, + { + "id": "30067f35.532f2", + "type": "link in", + "z": "1371dec5.76e671", + "name": "Camera Name", + "links": ["559a8085.1d6b9"], + "x": 205, + "y": 740, + "wires": [["f783aefd.c3bfd8"]] + }, + { + "id": "11b51f8f.acd308", + "type": "python3-function", + "z": "1371dec5.76e671", + "d": true, + "name": "fan temperature", + "func": "import smbus\nbus = smbus.SMBus(1)\n\naddr = 0x0d\nfan_reg = 0x08\n\ntemp = float( msg[\"payload\"])\n\n# 0x01 full speed, 0x02: 20% speed, ..., 0x09: 90% speed\n\nif temp < 38:\n bus.write_byte_data(addr, fan_reg, 0x00)\nelif temp < 43:\n bus.write_byte_data(addr, fan_reg, 0x02)\nelif temp < 46:\n bus.write_byte_data(addr, fan_reg, 0x04)\nelif temp < 48:\n bus.write_byte_data(addr, fan_reg, 0x06)\nelif temp < 52:\n bus.write_byte_data(addr, fan_reg, 0x08)\nelse:\n bus.write_byte_data(addr, fan_reg, 0x01)\n\nreturn msg", + "outputs": 1, + "x": 1440, + "y": 120, + "wires": [[]] + }, + { + "id": "eaf74a43.fa27d", + "type": "switch", + "z": "1371dec5.76e671", + "name": "if disk > 90%", + "property": "payload", + "propertyType": "msg", + "rules": [ + { + "t": "gte", + "v": "90", + "vt": "num" + } + ], + "checkall": "true", + "repair": false, + "outputs": 1, + "x": 590, + "y": 120, + "wires": [["6d09f428.930bcc"]] + }, + { + "id": "46d5e78b.15f998", + "type": "ui_toast", + "z": "1371dec5.76e671", + "position": "dialog", + "displayTime": "10", + "highlight": "", + "sendall": true, + "outputs": 1, + "ok": "OK", + "cancel": "", + "raw": false, + "className": "", + "topic": "", + "name": "", + "x": 1090, + "y": 120, + "wires": [[]] + }, + { + "id": "24df077a.cb252", + "type": "change", + "z": "1371dec5.76e671", + "name": "full disk msg", + "rules": [ + { + "t": "set", + "p": "payload", + "pt": "msg", + "to": "\"Your drive has reached 90% capacity, you should do a backup to an external drive and a purge.\"", + "tot": "str" + } + ], + "action": "", + "property": "", + "from": "", + "to": "", + "reg": false, + "x": 930, + "y": 120, + "wires": [["46d5e78b.15f998"]] + }, + { + "id": "6d09f428.930bcc", + "type": "delay", + "z": "1371dec5.76e671", + "name": "", + "pauseType": "rate", + "timeout": "5", + "timeoutUnits": "seconds", + "rate": "1", + "nbRateUnits": "5", + "rateUnits": "minute", + "randomFirst": "1", + "randomLast": "5", + "randomUnits": "seconds", + "drop": true, + "allowrate": false, + "outputs": 1, + "x": 760, + "y": 120, + "wires": [["24df077a.cb252"]] + }, + { + "id": "e640ebb5c397f424", + "type": "delay", + "z": "1371dec5.76e671", + "name": "", + "pauseType": "delay", + "timeout": "1", + "timeoutUnits": "seconds", + "rate": "1", + "nbRateUnits": "1", + "rateUnits": "second", + "randomFirst": "1", + "randomLast": "5", + "randomUnits": "seconds", + "drop": false, + "allowrate": false, + "outputs": 1, + "x": 1300, + "y": 40, + "wires": [["b7ab1ada.1f4158"]] + }, + { + "id": "7fb13a4a53b612a0", + "type": "rbe", + "z": "1371dec5.76e671", + "name": "", + "func": "rbe", + "gap": "", + "start": "", + "inout": "out", + "septopics": true, + "property": "payload", + "topi": "topic", + "x": 1010, + "y": 40, + "wires": [["2549f778.4eb828"]] + }, + { + "id": "ccb5172d10c1ccaf", + "type": "file in", + "z": "1371dec5.76e671", + "name": "Get machine name", + "filename": "/run/machine-name", + "filenameType": "str", + "format": "utf8", + "chunk": false, + "sendError": false, + "encoding": "none", + "allProps": false, + "x": 350, + "y": 680, + "wires": [["a400a97e.e333a8", "4828d2f4.7c712c"]] + }, + { + "id": "950b773ad4c0fdfe", + "type": "change", + "z": "1371dec5.76e671", + "name": "Get acq_instrument", + "rules": [ + { + "t": "set", + "p": "payload", + "pt": "msg", + "to": "payload.acq_instrument", + "tot": "msg" + }, + { + "t": "set", + "p": "topic", + "pt": "msg", + "to": "acq_instrument", + "tot": "str" + } + ], + "action": "", + "property": "", + "from": "", + "to": "", + "reg": false, + "x": 350, + "y": 620, + "wires": [["bdc6718a.dd5d48"]] + }, + { + "id": "24de7407445d2087", + "type": "inject", + "z": "1371dec5.76e671", + "name": "once", + "props": [ + { + "p": "payload" + } + ], + "repeat": "", + "crontab": "", + "once": true, + "onceDelay": "", + "topic": "", + "payload": "start", + "payloadType": "str", + "x": 90, + "y": 520, + "wires": [["e4f9ed2b337c2fa6"]] + }, + { + "id": "e4f9ed2b337c2fa6", + "type": "file in", + "z": "1371dec5.76e671", + "name": "Versioning File", + "filename": "/usr/share/planktoscope/installer-versioning.yml", + "filenameType": "str", + "format": "utf8", + "chunk": false, + "sendError": false, + "encoding": "none", + "allProps": false, + "x": 240, + "y": 520, + "wires": [["db79aae8a7fe3512"]] + }, + { + "id": "db79aae8a7fe3512", + "type": "yaml", + "z": "1371dec5.76e671", + "property": "payload", + "name": "", + "x": 390, + "y": 520, + "wires": [["04c313e8d9aac122", "ef1970121e57c5e8", "574361abfe75b3b3"]] + }, + { + "id": "04c313e8d9aac122", + "type": "change", + "z": "1371dec5.76e671", + "name": "Get repo", + "rules": [ + { + "t": "set", + "p": "payload", + "pt": "msg", + "to": "payload.repo", + "tot": "msg" + } + ], + "action": "", + "property": "", + "from": "", + "to": "", + "reg": false, + "x": 580, + "y": 480, + "wires": [["57b3b083a2455e09"]] + }, + { + "id": "ef1970121e57c5e8", + "type": "change", + "z": "1371dec5.76e671", + "name": "Get version", + "rules": [ + { + "t": "set", + "p": "payload", + "pt": "msg", + "to": "payload.version", + "tot": "msg" + } + ], + "action": "", + "property": "", + "from": "", + "to": "", + "reg": false, + "x": 590, + "y": 520, + "wires": [["3e64877a.9684b", "8343fa69.49339"]] + }, + { + "id": "57b3b083a2455e09", + "type": "function", + "z": "1371dec5.76e671", + "name": "set global", + "func": "global.set(\"process_source\", msg.payload);\n", + "outputs": 1, + "timeout": "", + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 820, + "y": 460, + "wires": [[]] + }, + { + "id": "574361abfe75b3b3", + "type": "change", + "z": "1371dec5.76e671", + "name": "Get commit", + "rules": [ + { + "t": "set", + "p": "payload", + "pt": "msg", + "to": "payload.commit", + "tot": "msg" + } + ], + "action": "", + "property": "", + "from": "", + "to": "", + "reg": false, + "x": 590, + "y": 560, + "wires": [["016d1d2a2f19f1a6"]] + }, + { + "id": "016d1d2a2f19f1a6", + "type": "function", + "z": "1371dec5.76e671", + "name": "set global", + "func": "global.set(\"process_commit\", msg.payload);\n", + "outputs": 1, + "timeout": "", + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 820, + "y": 580, + "wires": [[]] + }, + { + "id": "4ed64bd91fa9fbdf", + "type": "ui_template", + "z": "1371dec5.76e671", + "group": "3da7da8f.179606", + "name": "Metrics panel", + "order": 1, + "width": "0", + "height": "0", + "format": "
\n

\n The instrument's system time is different from your web browser's time by {{drift}}.\n As a result, timestamps in your datasets will be incorrect.\n Additionally, system metrics will not be recorded or shown correctly.\n Additionally, you will see incorrectly-aligned graphs in the metrics below.\n

\n

Please change the instrument's system time or your web browser's time to accurate values.

\n

\n \n

\n
\n\n
\n

Loading system metrics, please wait...

\n
\n\n
\n \n
\n\n\n", + "storeOutMessages": true, + "fwdInMessages": true, + "resendOnRefresh": false, + "templateScope": "local", + "className": "", + "x": 330, + "y": 280, + "wires": [[]] + }, + { + "id": "38bad1e220cd5d87", + "type": "ui_text", + "z": "1371dec5.76e671", + "group": "ce9e278.781eed8", + "order": 5, + "width": 0, + "height": 0, + "name": "", + "label": "System Time", + "format": "{{msg.payload}}", + "layout": "row-spread", + "className": "", + "style": false, + "font": "", + "fontSize": 16, + "color": "#000000", + "x": 590, + "y": 240, + "wires": [] + }, + { + "id": "ed5f2d963d85478b", + "type": "function", + "z": "1371dec5.76e671", + "name": "Get system time", + "func": "var date = new Date();\ndate.setSeconds(0, 0);\nmsg.payload = (\n date.toISOString().replace('T', ' ').replace(/:\\d+\\.\\d+Z/,' UTC')\n);\nreturn msg", + "outputs": 1, + "timeout": 0, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 340, + "y": 240, + "wires": [["38bad1e220cd5d87"]] + }, + { + "id": "23a84a3856fb68bd", + "type": "ui_template", + "z": "1371dec5.76e671", + "group": "ce9e278.781eed8", + "name": "Browser time", + "order": 6, + "width": "6", + "height": "1", + "format": "
\n

Browser Time

\n

{{time}}

\n
\n\n", + "storeOutMessages": true, + "fwdInMessages": true, + "resendOnRefresh": false, + "templateScope": "local", + "className": "", + "x": 330, + "y": 200, + "wires": [[]] + }, + { + "id": "19a45f972be2b0f1", + "type": "function", + "z": "1371dec5.76e671", + "name": "Get system time", + "func": "var date = new Date(msg.payload.timestamp);\nmsg.payload = (\n date.toISOString().replace('T', ' ').replace(/:\\d+\\.\\d+Z/,' UTC')\n);\nreturn msg", + "outputs": 1, + "timeout": 0, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 340, + "y": 340, + "wires": [["ee2c5e7c29eb4760"]] + }, + { + "id": "8ba3e2774987fd58", + "type": "http in", + "z": "1371dec5.76e671", + "name": "POST /api/system-time", + "url": "/api/system-time", + "method": "post", + "upload": false, + "swaggerDoc": "", + "x": 120, + "y": 360, + "wires": [["19a45f972be2b0f1", "07bbdca8d6153210", "595df18543c8328e"]] + }, + { + "id": "ee2c5e7c29eb4760", + "type": "ui_toast", + "z": "1371dec5.76e671", + "position": "top right", + "displayTime": "3", + "highlight": "", + "sendall": true, + "outputs": 0, + "ok": "OK", + "cancel": "", + "raw": false, + "className": "", + "topic": "Setting system time", + "name": "", + "x": 610, + "y": 340, + "wires": [] + }, + { + "id": "07bbdca8d6153210", + "type": "function", + "z": "1371dec5.76e671", + "name": "Prepare timestamp", + "func": "msg.payload = ('@' + msg.payload.timestamp).slice(0, -3);\nreturn msg;", + "outputs": 1, + "timeout": 0, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 350, + "y": 380, + "wires": [["7558e8f302d5b944"]] + }, + { + "id": "7558e8f302d5b944", + "type": "exec", + "z": "1371dec5.76e671", + "command": "sudo date -s", + "addpay": "payload", + "append": "", + "useSpawn": "", + "timer": "", + "winHide": false, + "name": "Set system time", + "x": 600, + "y": 380, + "wires": [[], [], []] + }, + { + "id": "c8be8dad272e1fa5", + "type": "http in", + "z": "1371dec5.76e671", + "name": "GET /api/system-time", + "url": "/api/system-time", + "method": "get", + "upload": false, + "swaggerDoc": "", + "x": 120, + "y": 420, + "wires": [["0f4ce59587fa14e1"]] + }, + { + "id": "0f4ce59587fa14e1", + "type": "function", + "z": "1371dec5.76e671", + "name": "Get system time", + "func": "var date = new Date();\nmsg.payload = {'timestamp': date.getTime()};\nreturn msg", + "outputs": 1, + "timeout": 0, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 340, + "y": 420, + "wires": [["433d48a4b1bc0b27"]] + }, + { + "id": "433d48a4b1bc0b27", + "type": "http response", + "z": "1371dec5.76e671", + "name": "Send GET response", + "statusCode": "", + "headers": { + "Content-Type": "application/json; charset=UTF-8" + }, + "x": 620, + "y": 420, + "wires": [] + }, + { + "id": "595df18543c8328e", + "type": "http response", + "z": "1371dec5.76e671", + "name": "Send POST response", + "statusCode": "", + "headers": {}, + "x": 620, + "y": 300, + "wires": [] + }, + { + "id": "1fdf77b5.24e4e", + "type": "mqtt in", + "z": "9a22e67a.378818", + "name": "", + "topic": "status/#", + "qos": "0", + "datatype": "json", + "broker": "8dc3722c.06efa8", + "inputs": 0, + "x": 290, + "y": 340, + "wires": [["fa73983d.318188"]] + }, + { + "id": "4a1e9e3e.27506", + "type": "switch", + "z": "9a22e67a.378818", + "name": "Filter segmenter out", + "property": "topic", + "propertyType": "msg", + "rules": [ + { + "t": "else" + }, + { + "t": "cont", + "v": "status/segmenter", + "vt": "str" + } + ], + "checkall": "true", + "repair": false, + "outputs": 2, + "x": 620, + "y": 340, + "wires": [["58f2e0f.4e8b12"], ["dcf5bd45.16a8d"]] + }, + { + "id": "fa73983d.318188", + "type": "json", + "z": "9a22e67a.378818", + "name": "", + "property": "payload", + "action": "obj", + "pretty": true, + "x": 430, + "y": 340, + "wires": [["4a1e9e3e.27506"]] + }, + { + "id": "58f2e0f.4e8b12", + "type": "link out", + "z": "9a22e67a.378818", + "name": "Fluidic module status", + "links": ["bb628f8d.98f108"], + "x": 795, + "y": 320, + "wires": [] + }, + { + "id": "dcf5bd45.16a8d", + "type": "link out", + "z": "9a22e67a.378818", + "name": "Segmenter module status", + "links": ["25867454.a8e334"], + "x": 795, + "y": 360, + "wires": [] + }, + { + "id": "e41870d7.300eb8", + "type": "link out", + "z": "1eaf21c8.f7a21e", + "name": "Stepper config change", + "links": ["45a7b5aa.2ed20c"], + "x": 1475, + "y": 380, + "wires": [] + }, + { + "id": "2068e7f.f4efb18", + "type": "delay", + "z": "1eaf21c8.f7a21e", + "name": "", + "pauseType": "delay", + "timeout": "1", + "timeoutUnits": "seconds", + "rate": "1", + "nbRateUnits": "1", + "rateUnits": "second", + "randomFirst": "1", + "randomLast": "5", + "randomUnits": "seconds", + "drop": false, + "outputs": 1, + "x": 1160, + "y": 380, + "wires": [["e41870d7.300eb8"]] + }, + { + "id": "8e3b3d3c.955148", + "type": "subflow:4ed26b8b.253504", + "z": "1eaf21c8.f7a21e", + "name": "", + "env": [], + "x": 1200, + "y": 420, + "wires": [] + }, + { + "id": "c534fd26.13741", + "type": "change", + "z": "1eaf21c8.f7a21e", + "name": "Get stepper_reverse", + "rules": [ + { + "t": "set", + "p": "payload", + "pt": "msg", + "to": "payload.stepper_reverse", + "tot": "msg" + } + ], + "action": "", + "property": "", + "from": "", + "to": "", + "reg": false, + "x": 640, + "y": 440, + "wires": [["cd1987c7.027f58"]] + }, + { + "id": "cd1987c7.027f58", + "type": "ui_switch", + "z": "1eaf21c8.f7a21e", + "name": "stepper_reverse", + "label": "Invert stepper output", + "tooltip": "Stepper 1 is controlled by output 1 or the other way around", + "group": "6be36295.0ab324", + "order": 5, + "width": 0, + "height": 0, + "passthru": false, + "decouple": "false", + "topic": "stepper_reverse", + "style": "", + "onvalue": "true", + "onvalueType": "bool", + "onicon": "", + "oncolor": "", + "offvalue": "false", + "offvalueType": "bool", + "officon": "", + "offcolor": "", + "x": 940, + "y": 440, + "wires": [["8e3b3d3c.955148", "2068e7f.f4efb18"]] + }, + { + "id": "54ba7f16.709ad8", + "type": "change", + "z": "1eaf21c8.f7a21e", + "name": "Get pump_steps_per_ml", + "rules": [ + { + "t": "set", + "p": "payload", + "pt": "msg", + "to": "payload.pump_steps_per_ml", + "tot": "msg" + } + ], + "action": "", + "property": "", + "from": "", + "to": "", + "reg": false, + "x": 650, + "y": 400, + "wires": [["ee58b91c.396108"]] + }, + { + "id": "ee58b91c.396108", + "type": "ui_text_input", + "z": "1eaf21c8.f7a21e", + "name": "pump_steps_per_ml", + "label": "Pump: steps per mL", + "tooltip": "", + "group": "6be36295.0ab324", + "order": 6, + "width": 0, + "height": 0, + "passthru": false, + "mode": "number", + "delay": "2000", + "topic": "pump_steps_per_ml", + "topicType": "str", + "x": 920, + "y": 400, + "wires": [["2068e7f.f4efb18", "8e3b3d3c.955148"]] + }, + { + "id": "7534dfd9.8cf3e8", + "type": "ui_template", + "z": "1eaf21c8.f7a21e", + "group": "6be36295.0ab324", + "name": "Information", + "order": 1, + "width": "8", + "height": 3, + "format": "
\n

\n Changing one of these values will cause the Python hardware controller to restart, to reload the new hardware configuration.\n

\n

\n Warning: selecting a hardware version from the dropdown menu below will also overwrite all of your hardware settings, including your camera white balance settings.\n

\n

\n If you are not sure, you probably should not be touching anything here!\n

\n
", + "storeOutMessages": true, + "fwdInMessages": true, + "resendOnRefresh": true, + "templateScope": "local", + "className": "", + "x": 590, + "y": 60, + "wires": [[]] + }, + { + "id": "a7e5c7f4.644678", + "type": "ui_dropdown", + "z": "1eaf21c8.f7a21e", + "name": "", + "label": "Hardware version", + "tooltip": "", + "place": "Select option", + "group": "6be36295.0ab324", + "order": 2, + "width": 0, + "height": 0, + "passthru": false, + "multiple": false, + "options": [ + { + "label": "", + "value": "PlanktoScope v2.1", + "type": "str" + }, + { + "label": "", + "value": "PlanktoScope v2.3", + "type": "str" + }, + { + "label": "", + "value": "PlanktoScope v2.5", + "type": "str" + }, + { + "label": "", + "value": "PlanktoScope v2.6", + "type": "str" + } + ], + "payload": "", + "topic": "acq_instrument", + "topicType": "str", + "className": "", + "x": 580, + "y": 160, + "wires": [["3e2c5c1c.4c57b4", "932a1ef8c2e81979", "025ad3cdaa557843"]] + }, + { + "id": "1cfadc66.3cde8c", + "type": 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[["244ca5dd62df2bcd"]] + }, + { + "id": "244ca5dd62df2bcd", + "type": "ui_text_input", + "z": "1eaf21c8.f7a21e", + "name": "process_pixel_fixed", + "label": "Pixel size calibration: um per pixel", + "tooltip": "Object size in µm / pixel. 0 will remove this calibration.", + "group": "6be36295.0ab324", + "order": 8, + "width": 0, + "height": 0, + "passthru": true, + "mode": "number", + "delay": "1000", + "topic": "process_pixel_fixed", + "sendOnBlur": true, + "className": "", + "topicType": "str", + "x": 930, + "y": 480, + "wires": [["8e3b3d3c.955148", "f9b47f4b1da15778"]] + }, + { + "id": "f9b47f4b1da15778", + "type": "function", + "z": "1eaf21c8.f7a21e", + "name": "Set or remove if null", + "func": "if (msg.payload == 0){\n global.set(msg.topic,undefined)\n}\nelse {\n global.set(msg.topic,msg.payload);\n}\n\nreturn msg", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 1200, + "y": 480, + "wires": [["5d5ad36d2c50dcc2"]] + }, + { + "id": 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"8e3b3d3c.955148"]] + }, + { + "id": "a6983d3232b570a7", + "type": "change", + "z": "1eaf21c8.f7a21e", + "name": "", + "rules": [ + { + "t": "set", + "p": "acq_fnumber_objective", + "pt": "global", + "to": "payload", + "tot": "msg" + } + ], + "action": "", + "property": "", + "from": "", + "to": "", + "reg": false, + "x": 1240, + "y": 520, + "wires": [["5d5ad36d2c50dcc2"]] + }, + { + "id": "11955bbeefc29ab4", + "type": "change", + "z": "1eaf21c8.f7a21e", + "name": "Get acq_fnumber_objective", + "rules": [ + { + "t": "set", + "p": "payload", + "pt": "msg", + "to": "payload.acq_fnumber_objective", + "tot": "msg" + }, + { + "t": "set", + "p": "topic", + "pt": "msg", + "to": "acq_fnumber_objective", + "tot": "str" + } + ], + "action": "", + "property": "", + "from": "", + "to": "", + "reg": false, + "x": 660, + "y": 520, + "wires": [["6146ba22df928516"]] + }, + { + "id": "da3d4a90384d62a8", + "type": "subflow:e6665421f66ea4c8", + "z": "1eaf21c8.f7a21e", + "name": "", + "x": 360, + "y": 440, + "wires": [ + [ + "c534fd26.13741", + "54ba7f16.709ad8", + "c67c305004f87e39", + "11955bbeefc29ab4" + ] + ] + }, + { + "id": "f83560053c609914", + "type": "inject", + "z": "1eaf21c8.f7a21e", + "name": "Once", + "props": [], + "repeat": "", + "crontab": "", + "once": true, + "onceDelay": 0.1, + "topic": "", + "x": 130, + "y": 440, + "wires": [["da3d4a90384d62a8"]] + }, + { + "id": "e4ead350b3d07578", + "type": "link out", + "z": "1eaf21c8.f7a21e", + "name": "Reload hardware config", + "mode": "link", + "links": ["04920f50bbbf6a2a", "45a7b5aa.2ed20c"], + "x": 875, + "y": 240, + "wires": [] + }, + { + "id": "025ad3cdaa557843", + "type": "ui_toast", + "z": "1eaf21c8.f7a21e", + "position": "top right", + "displayTime": "3", + "highlight": "", + "sendall": true, + "outputs": 0, + "ok": "OK", + "cancel": "", + "raw": false, + "className": "", + "topic": "Resetting hardware configuration to version-specific default", + "name": "", + "x": 830, + "y": 120, + "wires": [] + }, + { + "id": "932a1ef8c2e81979", + "type": "change", + "z": "1eaf21c8.f7a21e", + "name": "Choose default hardware config", + "rules": [ + { + "t": "set", + "p": "payload", + "pt": "msg", + "to": "$join([\"/home/pi/PlanktoScope/device-backend/default-configs/\", $substringAfter(msg.payload, \"PlanktoScope \"), \".hardware.json\"])", + "tot": "jsonata" + } + ], + "action": "", + "property": "", + "from": "", + "to": "", + "reg": false, + "x": 210, + "y": 240, + "wires": [["833dac7cbd693c53"]] + }, + { + "id": "833dac7cbd693c53", + "type": "exec", + "z": "1eaf21c8.f7a21e", + "command": "cp", + "addpay": "payload", + "append": "/home/pi/PlanktoScope/hardware.json", + "useSpawn": "false", + "timer": "", + "winHide": false, + "oldrc": false, + "name": "Copy default hardware config", + "x": 500, + "y": 240, + "wires": [["0b67ccf37c034e90"], [], []] + }, + { + "id": "0b67ccf37c034e90", + "type": "delay", + "z": "1eaf21c8.f7a21e", + "name": "", + "pauseType": "delay", + "timeout": "500", + "timeoutUnits": "milliseconds", + "rate": "1", + "nbRateUnits": "1", + "rateUnits": "second", + "randomFirst": "1", + "randomLast": "5", + "randomUnits": "seconds", + "drop": false, + "allowrate": false, + "outputs": 1, + "x": 730, + "y": 240, + "wires": [["da3d4a90384d62a8", "e4ead350b3d07578"]] + }, + { + "id": "2716aa5b3d027f95", + "type": "change", + "z": "1eaf21c8.f7a21e", + "name": "Get acq_instrument", + "rules": [ + { + "t": "set", + "p": "payload", + "pt": "msg", + "to": "payload.acq_instrument", + "tot": "msg" + }, + { + "t": "set", + "p": "topic", + "pt": "msg", + "to": "acq_instrument", + "tot": "str" + } + ], + "action": "", + "property": "", + "from": "", + "to": "", + "reg": false, + "x": 330, + "y": 160, + "wires": [["a7e5c7f4.644678"]] + } ] diff --git a/software/node-red-dashboard/planktoscopehat/flows.json b/software/node-red-dashboard/planktoscopehat/flows.json index d0671342e..d4964f0ab 100644 --- a/software/node-red-dashboard/planktoscopehat/flows.json +++ 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"id": "d9cd733b.ab73d", - "type": "ui_tab", - "name": "System Monitoring", - "icon": "fa-thermometer-full", - "order": 7, - "disabled": false, - "hidden": false - }, - { - "id": "4248342d.e55fac", - "type": "ui_group", - "name": "Optic Characterization", - "tab": "181bb236.1e94be", - "order": 4, - "disp": true, - "width": "6", - "collapse": false - }, - { - "id": "858a0e3c.987fe", - "type": "ui_group", - "name": "Preview", - "tab": "c9194f02.9d5e9", - "order": 1, - "disp": true, - "width": 10, - "collapse": false - }, - { - "id": "64903b47.4034e4", - "type": "ui_group", - "name": "Navigation", - "tab": "8d16beb8.9b3fb", - "order": 3, - "disp": false, - "width": "6", - "collapse": false - }, - { - "id": "3da7da8f.179606", - "type": "ui_group", - "name": "Metrics", - "tab": "d9cd733b.ab73d", - "order": 1, - "disp": true, - "width": "24", - "collapse": true, - "className": "" - }, - { - "id": "cc8bc4eb.651868", - "type": "ui_base", - "theme": { - "name": "theme-dark", - "lightTheme": { - 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false - }, - { - "id": "b5d61bc7.54fe48", - "type": "ui_group", - "name": "Statistics", - "tab": "c9194f02.9d5e9", - "order": 4, - "disp": true, - "width": "10", - "collapse": false - }, - { - "id": "8dc3722c.06efa8", - "type": "mqtt-broker", - "name": "", - "broker": "0.0.0.0", - "port": "1883", - "clientid": "Client_node", - "autoConnect": true, - "usetls": false, - "compatmode": false, - "protocolVersion": 4, - "keepalive": "60", - "cleansession": true, - "birthTopic": "", - "birthQos": "0", - "birthPayload": "", - "closeTopic": "", - "closeQos": "0", - "closePayload": "", - "willTopic": "", - "willQos": "0", - "willPayload": "" - }, - { - "id": "abeb6dad.635a2", - "type": "ui_group", - "name": "Control", - "tab": "8d16beb8.9b3fb", - "order": 1, - "disp": true, - "width": 10, - "collapse": false - }, - { - "id": "cf5d9f0e.d57e7", - "type": "ui_group", - "name": "Net Metadata", - "tab": "737ec584.2eea2c", - "order": 4, - "disp": false, - "width": "10", - "collapse": false - }, - { - "id": "ce9e278.781eed8", - "type": "ui_group", - "name": "Information", - "tab": "d9cd733b.ab73d", - "order": 5, - "disp": true, - "width": 6, - "collapse": false - }, - { - "id": "70de8209.68416c", - "type": "ui_group", - "name": "Status", - "tab": "c9194f02.9d5e9", - "order": 5, - "disp": true, - "width": 10, - "collapse": false - }, - { - "id": "46be9c86.dea684", - "type": "ui_group", - "name": "Status", - "tab": "8d16beb8.9b3fb", - "order": 2, - "disp": true, - "width": 10, - "collapse": false - }, - { - "id": "8c38a81e.9897a8", - "type": "ui_group", - "name": "Camera Settings", - "tab": "181bb236.1e94be", - "order": 3, - "disp": true, - "width": 6, - "collapse": false - }, - { - "id": "2489e51c.eed77a", - "type": "ui_tab", - "name": "Administration", - "icon": "dashboard", - "order": 9, - "disabled": false, - "hidden": false - }, - { - "id": "b0fb559a.6966a8", - "type": "ui_tab", - "name": "Hardware Settings", - "icon": "fa-cogs", - "disabled": false, - "hidden": false - }, - { - "id": "6be36295.0ab324", - "type": "ui_group", - "name": "Settings", - "tab": "b0fb559a.6966a8", - "order": 1, - "disp": false, - "width": "8", - "collapse": false, - "className": "" - }, - { - "id": "f3ca28ef.4df0a8", - "type": "ui_group", - "name": "Shutdown", - "tab": "3a6bb13f.c9703e", - "order": 8, - "disp": true, - "width": 4, - "collapse": false - }, - { - "id": "3dfd8a69.69ed56", - "type": "ui_spacer", - "name": "spacer", - "group": "f3ca28ef.4df0a8", - "order": 3, - "width": 4, - "height": 1 - }, - { - "id": "72a9216.2ff48e", - "type": "ui_spacer", - "name": "spacer", - "group": "4322c187.e73e5", - "order": 8, - "width": 10, - "height": 1 - }, - { - "id": "1b664927.c91d1f", - "type": "ui_spacer", - "name": "spacer", - "group": "b5d61bc7.54fe48", - "order": 2, - "width": 2, - "height": 1 - }, - { - "id": "1a663b6a.ab5805", - "type": "ui_spacer", - "name": "spacer", - "group": "b5d61bc7.54fe48", - "order": 4, - "width": 2, - "height": 1 - }, - { - "id": "8eeed8d8.ad9098", - "type": "ui_spacer", - "name": "spacer", - "group": "b5d61bc7.54fe48", - "order": 5, - "width": 2, - "height": 1 - }, - { - "id": "be1c5ce7.004e", - "type": "ui_spacer", - "name": "spacer", - "group": "b5d61bc7.54fe48", - "order": 6, - "width": 2, - "height": 1 - }, - { - "id": "c2fe38e9.555e3", - "type": "ui_spacer", - "name": "spacer", - "group": "b5d61bc7.54fe48", - "order": 7, - "width": 2, - "height": 1 - }, - { - "id": "89bd18b7.c779a8", - "type": "ui_spacer", - "name": "spacer", - "group": "b5d61bc7.54fe48", - "order": 8, - "width": 2, - "height": 1 - }, - { - "id": "3cbbfa5d.efa636", - "type": "ui_spacer", - "name": "spacer", - "group": "b7919ae2.c01788", - "order": 2, - "width": 5, - "height": 1 - }, - { - "id": "97148e8d8e298f1a", - "type": "ui_spacer", - "z": "cb95299c.2817c8", - "name": "spacer", - "group": "abeb6dad.635a2", - "order": 7, - "width": 10, - "height": 1 - }, - { - "id": "3b2eccc574e6a9ae", - "type": "ui_spacer", - "z": "cb95299c.2817c8", - "name": "spacer", - "group": "abeb6dad.635a2", - "order": 11, - "width": 1, - "height": 1 - }, - { - "id": "bbd6431d97c86f97", - "type": "ui_spacer", - "z": "cb95299c.2817c8", - "name": "spacer", - "group": "46be9c86.dea684", - "order": 4, - "width": 3, - "height": 1 - }, - { - "id": "5f98f5f140f0ecde", - "type": "ui_spacer", - "z": "cb95299c.2817c8", - "name": "spacer", - "group": "46be9c86.dea684", - "order": 6, - "width": 3, - "height": 1 - }, - { - "id": "7bc0a4c416e4545c", - "type": "ui_group", - "name": "Culture Date and Time", - "tab": "737ec584.2eea2c", - "order": 2, - "disp": true, - "width": "10", - "collapse": false, - "className": "" - }, - { - "id": "6c31ad948a9d62fd", - "type": "ui_spacer", - "z": "b771c342.49603", - "name": "spacer", - "group": "3e1ba03d.f01d8", - "order": 5, - "width": 10, - "height": 1 - }, - { - "id": "0035a03e1490cd8c", - "type": "ui_group", - "name": "Setup", - "tab": "3a6bb13f.c9703e", - "order": 1, - "disp": true, - "width": "8", - "collapse": false, - "className": "" - }, - { - "id": "833bc5bb.217ba8", - "type": "ui_group", - "name": "Preview", - "tab": "181bb236.1e94be", - "order": 1, - "disp": true, - "width": 18, - "collapse": false - }, - { - "id": "a7d64879.38298", - "type": "ui_group", - "name": "Logs", - "tab": "2489e51c.eed77a", - "order": 1, - "disp": true, - "width": "12", - "collapse": true, - "className": "" - }, - { - "id": "6465bdd5.15eb8c", - "type": "file in", - "z": "1c24ad9c.bebec2", - "name": "", - "filename": "/home/pi/PlanktoScope/config.json", - "filenameType": "str", - "format": "utf8", - "chunk": false, - "sendError": false, - "encoding": "none", - "x": 560, - "y": 60, - "wires": [ - [ - "15ceb135.6628bf" - ] - ], - "info": "# PlanktoScope Help\nThis Node will read the content of the file named **config.txt** containing all the input placeholders.\n" - }, - { - "id": "15ceb135.6628bf", - "type": "json", - "z": "1c24ad9c.bebec2", - "name": "config.json", - "property": "payload", - "action": "", - "pretty": false, - "x": 730, - "y": 60, - "wires": [ - [ - "ad541674.4791c8" - ] - ] - }, - { - "id": "7205d267.36adcc", - "type": "file", - "z": "1c24ad9c.bebec2", - "name": "", - "filename": "/home/pi/PlanktoScope/config.json", - "appendNewline": true, - "createDir": true, - "overwriteFile": "true", - "encoding": "none", - "x": 990, - "y": 160, - "wires": [ - [] - ] - }, - { - "id": "2e6ddf51.c0dba", - "type": "json", - "z": "1c24ad9c.bebec2", - "name": "config.json", - "property": "payload", - "action": "str", - "pretty": true, - "x": 730, + { + "id": "eaae323a.31b3", + "type": "tab", + "label": "Home", + "disabled": false, + "info": "" + }, + { + "id": "b771c342.49603", + "type": "tab", + "label": "Sample", + "disabled": false, + "info": "" + }, + { + "id": "bccd1f23.87219", + "type": "tab", + "label": "Optic Configuration", + "disabled": false, + "info": "" + }, + { + "id": "baa1e3d9.cb29d", + "type": "tab", + "label": "Fluidic Acquisition", + "disabled": false, + "info": "" + }, + { + "id": "cb95299c.2817c8", + "type": "tab", + "label": "Segmentation", + "disabled": false, + "info": "" + }, + { + "id": "c1660bc.e7ff7f8", + "type": "tab", + "label": "Gallery", + "disabled": false, + "info": "" + }, + { + "id": "9daf9e2b.019fc", + "type": "tab", + "label": "Administration", + "disabled": false, + "info": "" + }, + { + "id": "1371dec5.76e671", + "type": "tab", + "label": "System Monitoring", + "disabled": false, + "info": "" + }, + { + "id": "9a22e67a.378818", + "type": "tab", + "label": "MQTT Receive", + "disabled": false, + "info": "" + }, + { + "id": "1eaf21c8.f7a21e", + "type": "tab", + "label": "Hardware Settings", + "disabled": false, + "info": "" + }, + { + "id": "1c24ad9c.bebec2", + "type": "subflow", + "name": "Config", + "info": "An input to this subflow will get the configuration to be saved to disk.\n\nOn startup, this node outputs the loaded configuration", + "category": "", + "in": [ + { + "x": 220, "y": 160, "wires": [ - [ - "7205d267.36adcc" - ] - ] - }, - { - "id": "ad541674.4791c8", - "type": "function", - "z": "1c24ad9c.bebec2", - "name": "Global Set", - "func": "global.set(\"config_keys\", Object.keys(msg.payload));\n\nfor (const key in msg.payload) {\n global.set(key, msg.payload[key]);\n}\n\nreturn msg;", - "outputs": 1, - "timeout": "", - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 910, - "y": 60, - "wires": [ - [] + { + "id": "3ad9835.08c937c" + } ] - }, - { - "id": "3e9a33c.141384c", - "type": "inject", - "z": "1c24ad9c.bebec2", - "name": "Load config", - "props": [ - { - "p": "topic", - "vt": "str" - } - ], - "repeat": "", - "crontab": "", - "once": true, - "onceDelay": 0.1, - "topic": "", - "payloadType": "str", - "x": 230, + } + ], + "out": [ + { + "x": 1040, "y": 60, "wires": [ - [ - "6465bdd5.15eb8c" - ] - ] - }, - { - "id": "3ad9835.08c937c", - "type": "function", - "z": "1c24ad9c.bebec2", - "name": "get config payload", - "func": "keys = global.get(\"config_keys\")\n\nvar payload = {}\n\nkeys.forEach(function(item, index, array) {\n payload[item] = global.get(item);\n})\n\nreturn {\"payload\": payload};", - "outputs": 1, - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 410, - "y": 160, - "wires": [ - [ - "2e6ddf51.c0dba" - ] - ] - }, - { - "id": "f439663c.8abd3", - "type": "ui_ui_control", - "z": "1c24ad9c.bebec2", - "name": "Connect Event", - "events": "connect", - "x": 220, - "y": 100, - "wires": [ - [ - "6465bdd5.15eb8c" - ] - ] - }, - { - "id": "82099021.9ceb08", - "type": "file", - "z": "4ed26b8b.253504", - "name": "", - "filename": "/home/pi/PlanktoScope/hardware.json", - "appendNewline": true, - "createDir": true, - "overwriteFile": "true", - "encoding": "none", - "x": 660, - "y": 40, - "wires": [ - [] - ] - }, - { - "id": "bb0a8725.a1849", - "type": "json", - "z": "4ed26b8b.253504", - "name": "Create JSON", - "property": "payload", - "action": "str", - "pretty": true, - "x": 490, - "y": 40, - "wires": [ - [ - "82099021.9ceb08" - ] - ] - }, - { - "id": "53d163be.47cf24", - "type": "function", - "z": "4ed26b8b.253504", - "name": "Update and retrieve hardware_conf", - "func": "// change global\nhardware_conf = global.get(\"hardware_conf\");\n\nif (msg.topic == \"process_pixel_fixed\" && msg.payload == 0){\n delete hardware_conf[msg.topic]\n delete msg.topic\n}\n\nif (msg.topic !== null && msg.topic !== undefined){\n hardware_conf[msg.topic] = msg.payload;\n global.set(\"hardware_conf\", hardware_conf);\n}\n\nreturn {\"payload\": hardware_conf};", - "outputs": 1, - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 240, - "y": 40, - "wires": [ - [ - "bb0a8725.a1849" - ] - ] - }, - { - "id": "0f16258953fae292", - "type": "file in", - "z": "b7861ce703215a01", - "name": "", - "filename": "/home/pi/PlanktoScope/hardware.json", - "filenameType": "str", - "format": "utf8", - "chunk": false, - "sendError": false, - "encoding": "none", - "allProps": false, - "x": 250, + { + "id": "ad541674.4791c8", + "port": 0 + } + ] + } + ], + "env": [], + "color": "#DDAA99" + }, + { + "id": "4ed26b8b.253504", + "type": "subflow", + "name": "Save hardware config", + "info": "", + "category": "", + "in": [ + { + "x": 40, "y": 40, "wires": [ - [ - "81c516291ab19acd" - ] - ], - "info": "# PlanktoScope Help\nThis Node will read the content of the file named **config.txt** containing all the input placeholders.\n" - }, - { - "id": "81c516291ab19acd", - "type": "json", - "z": "b7861ce703215a01", - "name": "Parse JSON", - "property": "payload", - "action": "", - "pretty": false, - "x": 510, + { + "id": "53d163be.47cf24" + } + ] + } + ], + "out": [], + "env": [], + "meta": {}, + "color": "#DDAA99" + }, + { + "id": "b7861ce703215a01", + "type": "subflow", + "name": "Load hardware config", + "info": "", + "category": "", + "in": [ + { + "x": 40, "y": 40, "wires": [ - [ - "d0fbcd200cd09981" - ] + { + "id": "0f16258953fae292" + } ] - }, - { - "id": "d0fbcd200cd09981", - "type": "change", - "z": "b7861ce703215a01", - "name": "", - "rules": [ - { - "t": "set", - "p": "hardware_conf", - "pt": "global", - "to": "payload", - "tot": "msg" - } - ], - "action": "", - "property": "", - "from": "", - "to": "", - "reg": false, - "x": 730, + } + ], + "out": [ + { + "x": 900, "y": 40, "wires": [ - [] - ] - }, - { - "id": "4e78af2d.90be7", - "type": "ui_ui_control", - "z": "eaae323a.31b3", - "name": "", - "events": "change", - "x": 440, - "y": 160, - "wires": [ - [] - ] - }, - { - "id": "7789839d.69b48c", - "type": "ui_template", - "z": "eaae323a.31b3", - "group": "4e0cd5ea.17e59c", - "name": "Optic Configuration", - "order": 1, - "width": 4, - "height": 4, - "format": "\n \n
Optic Configuration
\n", - "storeOutMessages": true, - "fwdInMessages": true, - "resendOnRefresh": false, - "templateScope": "local", - "className": "", - "x": 130, - "y": 100, - "wires": [ - [ - "4e78af2d.90be7" - ] - ] - }, - { - "id": "6ea6c306.f9c12c", - "type": "ui_template", - "z": "eaae323a.31b3", - "group": "ef590206.24f6", - "name": "Fluidic Acquisition", - "order": 1, - "width": 4, - "height": 4, - "format": "\n \n
Fluidic Acquisition
\n", - "storeOutMessages": true, - "fwdInMessages": true, - "resendOnRefresh": false, - "templateScope": "local", - "className": "", - "x": 130, - "y": 140, - "wires": [ - [ - "4e78af2d.90be7" - ] - ] - }, - { - "id": "bb9eb153.9e36c", - "type": "ui_template", - "z": "eaae323a.31b3", - "group": "ae8f6620.073358", - "name": "Segmentation", - "order": 1, - "width": 4, - "height": 4, - "format": "\n \n
Segmentation
\n", - "storeOutMessages": true, - "fwdInMessages": true, - "resendOnRefresh": false, - "templateScope": "local", - "className": "", - "x": 140, - "y": 180, - "wires": [ - [ - "4e78af2d.90be7" - ] - ] - }, - { - "id": "eaf8ee7f.96f44", - "type": "ui_template", - "z": "eaae323a.31b3", - "group": "196518b2.4d53b7", - "name": "Gallery", - "order": 1, - "width": 4, - "height": 4, - "format": "\n \n
Gallery
\n", - "storeOutMessages": true, - "fwdInMessages": true, - "resendOnRefresh": false, - "templateScope": "local", - "className": "", - "x": 160, - "y": 220, - "wires": [ - [ - "4e78af2d.90be7" - ] - ] - }, - { - "id": "c1b1469.9650eb8", - "type": "ui_template", - "z": "eaae323a.31b3", - "group": "777a7c33.fcd804", - "name": "System Monitoring", - "order": 1, - "width": 4, - "height": 4, - "format": "\n \n
System Monitoring
\n", - "storeOutMessages": true, - "fwdInMessages": true, - "resendOnRefresh": false, - "templateScope": "local", - "className": "", - "x": 130, - "y": 260, - "wires": [ - [ - "4e78af2d.90be7" - ] - ] - }, - { - "id": "abafd6e6.04a5f8", - "type": "ui_template", - "z": "eaae323a.31b3", - "group": "6f97e7ae.270c48", - "name": "Sample", - "order": 1, - "width": 4, - "height": 4, - "format": "\n \n
Sample
\n
\n In doubt? Start Here!\n", - "storeOutMessages": true, - "fwdInMessages": true, - "resendOnRefresh": false, - "templateScope": "local", - "className": "", - "x": 160, - "y": 60, - "wires": [ - [ - "4e78af2d.90be7" - ] - ] - }, - { - "id": "dab82064.26a8d", - "type": "ui_button", - "z": "eaae323a.31b3", - "name": "Unlock button", - "group": "f3ca28ef.4df0a8", - "order": 2, - "width": 0, - "height": 0, - "passthru": false, - "label": "Unlock button", - "tooltip": "", - "color": "", - "bgcolor": "", - "icon": "", - "payload": "shutdown", - "payloadType": "flow", - "topic": "", - "x": 120, - "y": 380, - "wires": [ - [ - "6c3a3b4.78cad44" - ] - ] - }, - { - "id": "1c658761.b852a1", - "type": "ui_toast", - "z": "eaae323a.31b3", - "position": "dialog", - "displayTime": "3", - "highlight": "", - "sendall": true, - "outputs": 1, - "ok": "YES PLEASE", - "cancel": "NO!", - "raw": false, - "topic": "Are you sure?", - "name": "Confirmation message", - "x": 800, - "y": 380, - "wires": [ - [ - "8f1b8e23.daafe" - ] - ] - }, - { - "id": "a48ff63f.db5e18", - "type": "inject", - "z": "eaae323a.31b3", - "name": "disabled", - "props": [ - { - "p": "enabled", - "v": "false", - "vt": "bool" - } - ], - "repeat": "", - "crontab": "", - "once": true, - "onceDelay": 0.1, - "topic": "", - "x": 140, - "y": 420, - "wires": [ - [ - "d58039a9.6e7928" - ] - ] - }, - { - "id": "b67a7147.65fcd8", - "type": "ui_button", - "z": "eaae323a.31b3", - "name": "Shutdown button", - "group": "f3ca28ef.4df0a8", - "order": 4, - "width": 0, - "height": 0, - "passthru": false, - "label": "Shutdown", - "tooltip": "", - "color": "", - "bgcolor": "#AD1625", - "icon": "fa-power-off fa-2x", - "payload": "Do you want to turn the machine off now?", - "payloadType": "str", - "topic": "", - "x": 550, - "y": 380, - "wires": [ - [ - "1c658761.b852a1" - ] - ] - }, - { - "id": "d58039a9.6e7928", - "type": "change", - "z": "eaae323a.31b3", - "name": "", - "rules": [ - { - "t": "set", - "p": "shutdown", - "pt": "flow", - "to": "false", - "tot": "bool" - }, - { - "t": "set", - "p": "enabled", - "pt": "msg", - "to": "shutdown", - "tot": "flow" - } - ], - "action": "", - "property": "", - "from": "", - "to": "", - "reg": false, - "x": 320, - "y": 420, - "wires": [ - [ - "b67a7147.65fcd8" - ] - ] - }, - { - "id": "6c3a3b4.78cad44", - "type": "function", - "z": "eaae323a.31b3", - "name": "Toggle", - "func": "flow.set(\"shutdown\", !flow.get(\"shutdown\"))\nmsg.enabled = flow.get(\"shutdown\")\nreturn msg;", - "outputs": 1, - "noerr": 0, - "initialize": "", - "finalize": "", - "x": 290, - "y": 380, - "wires": [ - [ - "b67a7147.65fcd8" - ] - ] - }, - { - "id": "d1153ad6.40d738", - "type": "ui_template", - "z": "eaae323a.31b3", - "group": "f3ca28ef.4df0a8", - "name": "Shutdown information", - "order": 1, - "width": 0, - "height": 0, - "format": "
To prevent data corruption, please always shutdown the machine before unplugging the unit.\n

\nRemember to first unlock the shutdown button.\n
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"group": "46be9c86.dea684", + "order": 4, + "width": 3, + "height": 1 + }, + { + "id": "5f98f5f140f0ecde", + "type": "ui_spacer", + "z": "cb95299c.2817c8", + "name": "spacer", + "group": "46be9c86.dea684", + "order": 6, + "width": 3, + "height": 1 + }, + { + "id": "7bc0a4c416e4545c", + "type": "ui_group", + "name": "Culture Date and Time", + "tab": "737ec584.2eea2c", + "order": 2, + "disp": true, + "width": "10", + "collapse": false, + "className": "" + }, + { + "id": "6c31ad948a9d62fd", + "type": "ui_spacer", + "z": "b771c342.49603", + "name": "spacer", + "group": "3e1ba03d.f01d8", + "order": 5, + "width": 10, + "height": 1 + }, + { + "id": "0035a03e1490cd8c", + "type": "ui_group", + "name": "Setup", + "tab": "3a6bb13f.c9703e", + "order": 1, + "disp": true, + "width": "8", + "collapse": false, + "className": "" + }, + { + "id": "833bc5bb.217ba8", + "type": "ui_group", + "name": "Preview", + "tab": "181bb236.1e94be", + "order": 1, + "disp": true, + "width": 18, + "collapse": false + }, + { + "id": "a7d64879.38298", + "type": "ui_group", + "name": "Logs", + "tab": "2489e51c.eed77a", + "order": 1, + "disp": true, + "width": "12", + "collapse": true, + "className": "" + }, + { + "id": "6465bdd5.15eb8c", + "type": "file in", + "z": "1c24ad9c.bebec2", + "name": "", + "filename": "/home/pi/PlanktoScope/config.json", + "filenameType": "str", + "format": "utf8", + "chunk": false, + "sendError": false, + "encoding": "none", + "x": 560, + "y": 60, + "wires": [["15ceb135.6628bf"]], + "info": "# PlanktoScope Help\nThis Node will read the content of the file named **config.txt** containing all the input placeholders.\n" + }, + { + "id": "15ceb135.6628bf", + "type": "json", + "z": "1c24ad9c.bebec2", + "name": "config.json", + "property": "payload", + "action": "", + "pretty": false, + "x": 730, + "y": 60, + "wires": [["ad541674.4791c8"]] + }, + { + "id": "7205d267.36adcc", + "type": "file", + "z": "1c24ad9c.bebec2", + "name": "", + "filename": "/home/pi/PlanktoScope/config.json", 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Sample
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\n In doubt? Start Here!\n", + "storeOutMessages": true, + "fwdInMessages": true, + "resendOnRefresh": false, + "templateScope": "local", + "className": "", + "x": 160, + "y": 60, + "wires": [["4e78af2d.90be7"]] + }, + { + "id": "dab82064.26a8d", + "type": "ui_button", + "z": "eaae323a.31b3", + "name": "Unlock button", + "group": "f3ca28ef.4df0a8", + "order": 2, + "width": 0, + "height": 0, + "passthru": false, + "label": "Unlock button", + "tooltip": "", + "color": "", + "bgcolor": "", + "icon": "", + "payload": "shutdown", + "payloadType": "flow", + "topic": "", + "x": 120, + "y": 380, + "wires": [["6c3a3b4.78cad44"]] + }, + { + "id": "1c658761.b852a1", + "type": "ui_toast", + "z": "eaae323a.31b3", + "position": "dialog", + "displayTime": "3", + "highlight": "", + "sendall": true, + "outputs": 1, + "ok": "YES PLEASE", + "cancel": "NO!", + "raw": false, + "topic": "Are you sure?", + "name": "Confirmation message", + "x": 800, + "y": 380, + "wires": [["8f1b8e23.daafe"]] + }, + { + "id": "a48ff63f.db5e18", + "type": "inject", + "z": "eaae323a.31b3", + "name": "disabled", + "props": [ + { + "p": "enabled", + "v": "false", + "vt": "bool" + } + ], + "repeat": "", + "crontab": "", + "once": true, + "onceDelay": 0.1, + "topic": "", + "x": 140, + "y": 420, + "wires": [["d58039a9.6e7928"]] + }, + { + "id": "b67a7147.65fcd8", + "type": "ui_button", + "z": "eaae323a.31b3", + "name": "Shutdown button", + "group": "f3ca28ef.4df0a8", + "order": 4, + "width": 0, + "height": 0, + "passthru": false, + "label": "Shutdown", + "tooltip": "", + "color": "", + "bgcolor": "#AD1625", + "icon": "fa-power-off fa-2x", + "payload": "Do you want to turn the machine off now?", + "payloadType": "str", + "topic": "", + "x": 550, + "y": 380, + "wires": [["1c658761.b852a1"]] + }, + { + "id": "d58039a9.6e7928", + "type": "change", + "z": "eaae323a.31b3", + "name": "", + "rules": [ + { + "t": "set", + "p": "shutdown", + "pt": "flow", + "to": "false", + "tot": "bool" + }, + { + "t": "set", + "p": "enabled", + "pt": "msg", + "to": "shutdown", + "tot": "flow" + } + ], + "action": "", + "property": "", + "from": "", + "to": "", + "reg": false, + "x": 320, + "y": 420, + "wires": [["b67a7147.65fcd8"]] + }, + { + "id": "6c3a3b4.78cad44", + "type": "function", + "z": "eaae323a.31b3", + "name": "Toggle", + "func": "flow.set(\"shutdown\", !flow.get(\"shutdown\"))\nmsg.enabled = flow.get(\"shutdown\")\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "x": 290, + "y": 380, + "wires": [["b67a7147.65fcd8"]] + }, + { + "id": "d1153ad6.40d738", + "type": "ui_template", + "z": "eaae323a.31b3", + "group": "f3ca28ef.4df0a8", + "name": "Shutdown information", + "order": 1, + "width": 0, + "height": 0, + "format": "
To prevent data corruption, please always shutdown the machine before unplugging the unit.\n

\nRemember to first unlock the shutdown button.\n
", + "storeOutMessages": true, + "fwdInMessages": false, + "resendOnRefresh": true, + "templateScope": "local", + "x": 120, + "y": 320, + "wires": [[]] + }, + { + "id": "e08cfcb8.2a67e8", + "type": "link out", + "z": "eaae323a.31b3", + "name": "Home shutdown button", + "links": ["b81b990a.d4dca"], + "x": 715, + "y": 500, + "wires": [] + }, + { + "id": "ce7087fc.dcc9e8", + "type": "ui_toast", + "z": "eaae323a.31b3", + "position": "dialog", + "displayTime": "10", + "highlight": "", + "sendall": true, + "outputs": 1, + "ok": "OK", + "cancel": "", + "raw": false, + "topic": "Turning off now!", + "name": "Shutdown message", + "x": 580, + "y": 540, + "wires": [[]] + }, + { + "id": "7d1626a0.deb85", + "type": "change", + "z": "eaae323a.31b3", + "name": "shutdown!", + "rules": [ + { + "t": "set", + "p": "payload", + "pt": "msg", + "to": "shutdown", + "tot": "str" + } + ], + "action": "", + "property": "", + "from": "", + "to": "", + "reg": false, + "x": 310, + "y": 500, + "wires": [["e08cfcb8.2a67e8"]] + }, + { + "id": "8f1b8e23.daafe", + "type": "switch", + "z": "eaae323a.31b3", + "name": "", + "property": "payload", + "propertyType": "msg", + "rules": [ + { + "t": "eq", + "v": "NO!", + "vt": "str" + }, + { + "t": "else" + } + ], + "checkall": "true", + "repair": false, + "outputs": 2, + "x": 150, + "y": 500, + "wires": [["d58039a9.6e7928"], ["7d1626a0.deb85", "281a56c9.ec7902"]] + }, + { + "id": "281a56c9.ec7902", + "type": "change", + "z": "eaae323a.31b3", + "name": "Shutdown message", + "rules": [ + { + "t": "set", + "p": "payload", + "pt": "msg", + "to": "Please wait a minute before disconnecting the machine from its power supply!", + "tot": "str" + } + ], + "action": "", + "property": "", + "from": "", + "to": "", + "reg": false, + "x": 340, + "y": 540, + "wires": [["ce7087fc.dcc9e8"]] + }, + { + "id": "57db4f6279b5afe0", + "type": "comment", + "z": "eaae323a.31b3", + "name": "LICENSE", + "info": "Copyright 2022 Thibaut Pollina and Romain Bazile\nLicensed under GPL v3.0", + "x": 140, + "y": 600, + "wires": [] + }, + { + "id": "6af85f0e0fc21b11", + "type": "ui_ui_control", + "z": "eaae323a.31b3", + "name": "", + "events": "all", + "x": 700, + "y": 720, + "wires": [[]] + }, + { + "id": "382f8fcc81f904f1", + "type": "ui_dropdown", + "z": "eaae323a.31b3", + "name": "", + "label": "Hardware version", + "tooltip": "", + "place": "Select option", + "group": "0035a03e1490cd8c", + "order": 2, + "width": 0, + "height": 0, + "passthru": false, + "multiple": false, + "options": [ + { + "label": "", + "value": "PlanktoScope v2.3", + "type": "str" + }, + { + "label": "", + "value": "PlanktoScope v2.5", + "type": "str" + }, + { + "label": "", + "value": "PlanktoScope v2.6", + "type": "str" + }, + { + "label": "", + "value": "PlanktoScope v3.0", + "type": "str" + } + ], + "payload": "", + "topic": "acq_instrument", + "topicType": "str", + "className": "", + "x": 490, + "y": 640, + "wires": [["9f34e4a2f33c4022"]] + }, + { + "id": "9f34e4a2f33c4022", + "type": "link out", + "z": "eaae323a.31b3", + "name": "Set hardware version", + "mode": "link", + "links": ["cb9009e8a49e93cc"], + "x": 655, + "y": 640, + "wires": [] + }, + { + "id": "e954204b947a0c70", + "type": "switch", + "z": "eaae323a.31b3", + "name": "", + "property": "payload", + "propertyType": "msg", + "rules": [ + { + "t": "null" + }, + { + "t": "else" + } + ], + "checkall": "true", + "repair": false, + "outputs": 2, + "x": 290, + "y": 680, + "wires": [["382f8fcc81f904f1", "e3736dd7be4b7522"], ["f80babd43aa7cce4"]] + }, + { + "id": "e3736dd7be4b7522", + "type": "change", + "z": "eaae323a.31b3", + "name": "Show setup panel", + "rules": [ + { + "t": "set", + "p": "payload", + "pt": "msg", + "to": "{\"group\":{\"show\":[\"Home_Setup\"],\"hide\":[\"Home_Group_1\",\"Home_Group_2\",\"Home_Group_3\",\"Home_Group_4\",\"Home_Group_5\",\"Home_Group_6\"]}}", + "tot": "json" + } + ], + "action": "", + "property": "", + "from": "", + "to": "", + "reg": false, + "x": 490, + "y": 680, + "wires": [["6af85f0e0fc21b11"]] + }, + { + "id": "f80babd43aa7cce4", + "type": "change", + "z": "eaae323a.31b3", + "name": "Show home buttons", + "rules": [ + { + "t": "set", + "p": "payload", + "pt": "msg", + "to": "{\"group\":{\"hide\":[\"Home_Setup\"],\"show\":[\"Home_Group_1\",\"Home_Group_2\",\"Home_Group_3\",\"Home_Group_4\",\"Home_Group_5\",\"Home_Group_6\"]}}", + "tot": "json" + } + ], + "action": "", + "property": "", + "from": "", + "to": "", + "reg": false, + "x": 500, + "y": 720, + "wires": [["6af85f0e0fc21b11"]] + }, + { + "id": "438439b4ae62444c", + "type": "ui_template", + "z": "eaae323a.31b3", + "group": "0035a03e1490cd8c", + "name": "Information", + "order": 1, + "width": "0", + "height": "0", + "format": "
\n

\n To start using your PlanktoScope, please indicate the version of your PlanktoScope hardware:\n

\n
\n", + "storeOutMessages": true, + "fwdInMessages": true, + "resendOnRefresh": true, + "templateScope": "local", + "className": "", + "x": 710, + "y": 680, + "wires": [[]] + }, + { + "id": "a2f2a4c7cbae4446", + "type": "link in", + "z": "eaae323a.31b3", + "name": "Load hardware version", + "links": ["3973b999ee7b3b1d", "56dd3f82c45717f0"], + "x": 185, + "y": 680, + "wires": [["e954204b947a0c70"]] + }, + { + "id": "4557d689.a4fa88", + "type": "ui_text_input", + "z": "b771c342.49603", + "name": "sample_ship", + "label": "Name of the ship", + "tooltip": "", + "group": "3e1ba03d.f01d8", + "order": 2, + "width": 0, + "height": 0, + "passthru": true, + "mode": "text", + "delay": "300", + "topic": "sample_ship", + "sendOnBlur": true, + "className": "", + "topicType": "str", + "x": 670, + "y": 80, + "wires": [["9f501f49.45645"]] + }, + { + "id": "fcfc31ae.af3af", + "type": "ui_dropdown", + "z": "b771c342.49603", + "name": "sample_sampling_gear", + "label": "Sampling gear*", + "tooltip": "", + 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"ui_text_input", + "z": "b771c342.49603", + "name": "sample_id", + "label": "Station ID*", + "tooltip": "", + "group": "3e1ba03d.f01d8", + "order": 4, + "width": 0, + "height": 0, + "passthru": true, + "mode": "text", + "delay": "300", + "topic": "sample_id", + "sendOnBlur": true, + "className": "", + "topicType": "str", + "x": 670, + "y": 120, + "wires": [["9f501f49.45645"]] + }, + { + "id": "9f501f49.45645", + "type": "function", + "z": "b771c342.49603", + "name": "set global", + "func": "global.set(msg.topic,msg.payload);", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 1080, + "y": 200, + "wires": [[]] + }, + { + "id": "222c851d.5d0a3a", + "type": "ui_ui_control", + "z": "b771c342.49603", + "name": "", + "events": "change", + "x": 400, + "y": 880, + "wires": [[]] + }, + { + "id": "52f6b103.1efb6", + "type": "ui_toast", + "z": "b771c342.49603", + "position": "dialog", + "displayTime": "3", + "highlight": "", + "sendall": true, + "outputs": 1, + "ok": "OK", + "cancel": "", + "raw": false, + "topic": "", + "name": "", + "x": 710, + "y": 980, + "wires": [[]] + }, + { + "id": "986d960a.c75908", + "type": "function", + "z": "b771c342.49603", + "name": "Check form", + "func": "var sample_project= global.get(\"sample_project\");\nvar sample_id= global.get(\"sample_id\");\nvar sample_operator= global.get(\"sample_operator\");\nvar sample_sampling_gear= global.get(\"sample_sampling_gear\");\nvar object_lat= global.get(\"object_lat\");\nvar object_lon= global.get(\"object_lon\");\nvar object_date= global.get(\"object_date\");\nvar object_time= global.get(\"object_time\");\nif (sample_project === undefined || sample_project === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Sample project\"\n return [null, msg];\n}\n\nelse if (sample_id === undefined || sample_id === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Sample ID\"\n return [null, msg];\n}\n\nelse if (sample_operator === undefined || sample_operator === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Sample operator\"\n return [null, msg];\n}\n\nelse if (sample_sampling_gear === undefined || sample_sampling_gear === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Sample sampling gear\"\n return [null, msg];\n}\n\nelse if (object_lat === undefined || object_lat === null) {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Latitude of sample\"\n return [null, msg];\n}\n\nelse if (object_lon === undefined || object_lon === null) {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Longitude of sample\"\n return [null, msg];\n}\n\nelse if (object_date === undefined || object_date === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Date of sample\"\n return [null, msg];\n}\n\nelse if (object_time === undefined || object_time === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Time of sample\"\n return [null, msg];\n}\nelse if (sample_sampling_gear.startsWith(\"net\")){\n var object_lat_end = global.get(\"object_lat_end\");\n var object_lon_end = global.get(\"object_lon_end\");\n var object_date_end = global.get(\"object_date_end\");\n var object_time_end = global.get(\"object_time_end\");\n var sample_gear_net_opening = global.get(\"sample_gear_net_opening\");\n\n if (object_lat_end === undefined || object_lat_end === null) {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Latitude of retrieval\"\n return [null, msg];\n }\n \n else if (object_lon_end === undefined || object_lon_end === null) {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Longitude of retrieval\"\n return [null, msg];\n }\n \n else if (object_date_end === undefined || object_date_end === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Date of retrieval\"\n return [null, msg];\n }\n \n else if (object_time_end === undefined || object_time_end === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Time of retrieval\"\n return [null, msg];\n }\n \n else if (sample_gear_net_opening === undefined || sample_gear_net_opening === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Net opening dimension\"\n return [null, msg];\n }\n \n if (sample_sampling_gear == \"net_decknet\"){\n var sample_total_volume = global.get(\"sample_total_volume\");\n if (sample_total_volume === undefined || sample_total_volume === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Decknet flowmeter readings\"\n return [null, msg];\n }\n }\n}\nmsg.topic = \"config_save\"\nmsg.payload={\"tab\":\"Optic Configuration\"};\n\nreturn [msg, null];", + "outputs": 2, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 470, + "y": 940, + "wires": [["726a7822.cd6298", "e2b277c1.07283"], ["52f6b103.1efb6"]], + "outputLabels": ["message", "error"] + }, + { + "id": "726a7822.cd6298", + "type": "ui_ui_control", + "z": "b771c342.49603", + "name": "", + "events": "change", + "x": 700, + "y": 900, + "wires": [[]] + }, + { + "id": "16de754c.cc969b", + "type": "ui_button", + "z": "b771c342.49603", + "name": "", + "group": "5517c651.b2f668", + "order": 1, + "width": 5, + "height": 1, + "passthru": false, + "label": "Previous", + "tooltip": "", + "color": "#097479", + "bgcolor": "white", + "icon": "keyboard_return", + "payload": "{\"tab\":\"Home\"}", + "payloadType": "json", + "topic": "", + "x": 240, + "y": 880, + "wires": [["222c851d.5d0a3a"]] + }, + { + "id": "84f3d040.5f7ea", + "type": "ui_button", + "z": "b771c342.49603", + "name": "", + "group": "5517c651.b2f668", + "order": 2, + "width": 5, + "height": 1, + "passthru": false, + "label": "Continue", + "tooltip": "", + "color": "#097479", + "bgcolor": "white", + "icon": "keyboard_tab", + "payload": "{\"tab\":\"Home\"}", + "payloadType": "json", + "topic": "", + "x": 240, + "y": 940, + "wires": [["986d960a.c75908"]] + }, + { + "id": "d027a6bf.7049e8", + "type": "function", + "z": "b771c342.49603", + "name": "get sample_projet", + "func": "msg.payload = msg.payload.sample_project;\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 310, + "y": 40, + "wires": [["9c882b37.fde668"]] + }, + { + "id": "5a811caf.0f3144", + "type": "function", + "z": "b771c342.49603", + "name": "get sample_ship", + "func": "msg.payload = msg.payload.sample_ship;\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 300, + "y": 80, + "wires": [["4557d689.a4fa88"]] + }, + { + "id": "45911c98.2bd83c", + "type": "function", + "z": "b771c342.49603", + "name": "get sample_id", + "func": "msg.payload = msg.payload.sample_id;\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 300, + "y": 120, + "wires": [["94eb4221.9b92c"]] + }, + { + "id": "1e09a4ab.72996b", + "type": "function", + "z": "b771c342.49603", + "name": "get sample_operator", + "func": "msg.payload = msg.payload.sample_operator;\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 320, + "y": 160, + "wires": [["82c5fc77.59c97"]] + }, + { + "id": "a3272681.f271c8", + "type": "function", + "z": "b771c342.49603", + "name": "get sample_sampling_gear", + "func": "msg.topic = \"sample_sampling_gear\"\nif (msg.payload.sample_sampling_gear === undefined){\n msg.payload = \"net\";\n}\nelse\n{\n msg.payload = msg.payload.sample_sampling_gear;\n}\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 340, + "y": 200, + "wires": [["fcfc31ae.af3af"]] + }, + { + "id": "a6907a38.f6611", + "type": "subflow:1c24ad9c.bebec2", + "z": "b771c342.49603", + "name": "", + "env": [], + "x": 70, + "y": 220, + "wires": [ + [ + "d027a6bf.7049e8", + "5a811caf.0f3144", + "45911c98.2bd83c", + "1e09a4ab.72996b", + "8dff1648.82e42", + "9f04c5ec.75f3d8", + "f408a273.4fb538", + "e73fd87d.d24e4", + "489c8e06.cc7d6", + "a3272681.f271c8" + ] + ] + }, + { + "id": "e2b277c1.07283", + "type": "subflow:1c24ad9c.bebec2", + "z": "b771c342.49603", + "name": "", + "env": [], + "x": 690, + "y": 940, + "wires": [[]] + }, + { + "id": "9c7f7fc9.c8d3a", + "type": "ui_text_input", + "z": "b771c342.49603", + "name": "object_depth_max", + "label": "Max sampling depth (m)", + "tooltip": "in m", + "group": "3e1ba03d.f01d8", + "order": 10, + "width": 5, + "height": 1, + "passthru": true, + "mode": "number", + "delay": "300", + "topic": "object_depth_max", + "sendOnBlur": true, + "className": "", + "topicType": "str", + "x": 650, + "y": 240, + "wires": [["9f501f49.45645"]] + }, + { + "id": "317eeeb7.8d3042", + "type": "ui_text_input", + "z": "b771c342.49603", + "name": "object_depth_min", + "label": "Min sampling depth (m)", + "tooltip": "in m", + "group": "3e1ba03d.f01d8", + "order": 9, + "width": 5, + "height": 1, + "passthru": true, + "mode": "number", + "delay": "300", + "topic": "object_depth_min", + "sendOnBlur": true, + "className": "", + "topicType": "str", + "x": 650, + "y": 280, + "wires": [["9f501f49.45645"]] + }, + { + "id": "cbb123ab.fd3428", + "type": "ui_ui_control", + "z": "b771c342.49603", + "name": "show/hide net groups", + "events": "change", + "x": 1320, + "y": 300, + "wires": [[]] + }, + { + "id": "642ff403.1ed91c", + "type": "ui_text_input", + "z": "b771c342.49603", + "name": "sample_concentrated_sample_volume", + "label": "Concentrated sample volume (mL)", + "tooltip": "Volume extracted from the net codend (in mL)", + "group": "3e1ba03d.f01d8", + "order": 12, + "width": 10, + "height": 1, + "passthru": true, + "mode": "number", + "delay": "300", + "topic": "sample_concentrated_sample_volume", + "sendOnBlur": true, + "className": "", + "topicType": "str", + "x": 590, + "y": 440, + "wires": [["9f501f49.45645"]] + }, + { + "id": "e967b844.46aa48", + "type": "ui_text_input", + "z": "b771c342.49603", + "name": "sample_gear_net_opening", + "label": "Net opening dimension (mm)", + "tooltip": "Size of the net mouth opening (in mm)", + "group": "cf5d9f0e.d57e7", + "order": 1, + "width": 10, + "height": 1, + "passthru": true, + "mode": "number", + "delay": "300", + "topic": "sample_gear_net_opening", + "sendOnBlur": true, + "className": "", + "topicType": "str", + "x": 620, + "y": 320, + "wires": [["9f501f49.45645"]] + }, + { + "id": "c0ce5626.b6c5", + "type": "ui_toast", + "z": "b771c342.49603", + "position": "dialog", + "displayTime": "3", + "highlight": "", + "sendall": true, + "outputs": 1, + "ok": "OK", + "cancel": "", + "raw": false, + "topic": "", + "name": "", + "x": 1230, + "y": 620, + "wires": [[]] + }, + { + "id": "c33f1124.af6688", + "type": "ui_form", + "z": "b771c342.49603", + "name": "sample_location", + "label": "Sample Location", + "group": "cef1e703.bcf3c8", + "order": 1, + "width": 0, + "height": 0, + "options": [ + { + "label": "Latitude (36.574439°N or 36°57.4439'N)", + "value": "object_lat", + "type": "text", + "required": true, + "rows": null + }, + { + "label": "Longitude (110.42100°W or 110°4.2100'W)", + "value": "object_lon", + "type": "text", + "required": true, + "rows": null + }, + { + "label": "Date (YYYY-MM-DD, UTC)", + "value": "object_date", + "type": "text", + "required": true, + "rows": null + }, + { + "label": "Time (HH:MM(:SS), UTC 24h)", + "value": "object_time", + "type": "text", + "required": true, + "rows": null + } + ], + "formValue": { + "object_lat": "", + "object_lon": "", + "object_date": "", + "object_time": "" + }, + "payload": "", + "submit": "Validate", + "cancel": "Reset", + "topic": "sample_location", + "x": 660, + "y": 580, + "wires": [["14658615.47c862", "a9fb1f4b83fc25a7"]] + }, + { + "id": "358908cd.416ab", + "type": "ui_form", + "z": "b771c342.49603", + "name": "net_throw_location", + "label": "Net Throw Location", + "group": "cf5d9f0e.d57e7", + "order": 3, + "width": 0, + "height": 0, + "options": [ + { + "label": "Latitude (36.574439°N or 36°57.4439'N)", + "value": "object_lat", + "type": "text", + "required": true, + "rows": null + }, + { + "label": "Longitude (110.42100°W or 110°4.2100'W)", + "value": "object_lon", + "type": "text", + "required": true, + "rows": null + }, + { + "label": "Date (YYYY-MM-DD UTC)", + "value": "object_date", + "type": "text", + "required": true, + "rows": null + }, + { + "label": "Time (HH:MM, UTC 24h)", + "value": "object_time", + "type": "text", + "required": true, + "rows": null + } + ], + "formValue": { + "object_lat": "", + "object_lon": "", + "object_date": "", + "object_time": "" + }, + "payload": "", + "submit": "Validate", + "cancel": "", + "topic": "net_throw_location", + "topicType": "str", + "splitLayout": false, + "className": "", + "x": 650, + "y": 620, + "wires": [["14658615.47c862", "ad54b89540460d27"]] + }, + { + "id": "56d40584.eff4e4", + "type": "ui_form", + "z": "b771c342.49603", + "name": "net_retrieval_location", + "label": "Net Retrieval Location", + "group": "cf5d9f0e.d57e7", + "order": 4, + "width": 0, + "height": 0, + "options": [ + { + "label": "Latitude (36.574439°N or 36°57.4439'N)", + "value": "object_lat_end", + "type": "text", + "required": true, + "rows": null + }, + { + "label": "Longitude (110.42100°W or 110°4.2100'W)", + "value": "object_lon_end", + "type": "text", + "required": true, + "rows": null + }, + { + "label": "Date (YYYY-MM-DD UTC)", + "value": "object_date_end", + "type": "text", + "required": true, + "rows": null + }, + { + "label": "Time (HH:MM, UTC 24h)", + "value": "object_time_end", + "type": "text", + "required": true, + "rows": null + } + ], + "formValue": { + "object_lat_end": "", + "object_lon_end": "", + "object_date_end": "", + "object_time_end": "" + }, + "payload": "", + "submit": "Validate", + "cancel": "", + "topic": "net_retrieval_location", + "topicType": "str", + "splitLayout": false, + "x": 640, + "y": 660, + "wires": [["14658615.47c862", "c21bf0244e67e40a"]] + }, + { + "id": "14658615.47c862", + "type": "function", + "z": "b771c342.49603", + "name": "Validate Location / Timestamp", + "func": "// Code added here will be run once\n// whenever the node is started.\nfunction ConvertDDMMToDD(input) {\n // Input Format 36°57.4439'N, 110°4.2100'W\n // From https://stackoverflow.com/questions/1140189/converting-latitude-and-longitude-to-decimal-values\n if (!input.match(/\\d+°\\d+\\.*\\d*\\'[NSEW]/)){\n \treturn \"parsing error\"\n }\n var parts = input.split(/[^\\d.\\w]+/)\n if (parts.length != 3){\n \treturn \"parsing error\"\n }\n var dd = Number(parts[0]) + Number(parts[1])/60\n return dd.toFixed(6) + parts[2]\n}\n\nfunction ValidateCoordinates(input, lat){\n // Input Format 36.574439°N, 110.42100°W\n // Or 36°57.4439'N, 110°4.2100'W\n if (input.match(\"'\")){\n input = ConvertDDMMToDD(input)\n }\n \n var error = {}\n\n if (input.startsWith(\"parsing error\")){\n error.topic = \"Error with the \"\n error.payload = \"You need to respect the format example, 36.574439°N or 36°57.4439'N\"\n return [null, error]\n }\n \n var direction = input.match(/[NSEW]/)\n var position = input.match(/[\\+\\-\\d\\.]+/)\n \n if (direction === null){\n error.topic = \"Error with the \"\n error.payload = \"You need to explicitely enter N/S/E/W\"\n return [null, error]\n }\n \n // Test that position is only made of digits!\n if(/^[\\+\\-]/.test(position)){\n error.topic = \"Error with the \"\n error.payload = \"Use of +/- sign is inconsistent with N/S/E/W letter! Please only use N/S/E/W!\"\n return [null, error]\n }\n \n var dd = Number(position)\n if (lat){\n // Check latitude\n if (direction == \"S\" || direction == \"N\") {\n if (dd>90.0){\n error.topic = \"Error with the \"\n error.payload = \"Latitude is more than 90°\"\n return [null, error]\n }\n }\n if (direction == \"W\" || direction == \"E\") {\n error.topic = \"Error with the \"\n error.payload = \"This is not a Latitude!\"\n return [null, error]\n }\n }\n else{\n // Check longitude\n if (direction == \"W\" || direction == \"E\") {\n if (dd>180.0){\n error.topic = \"Error with the \"\n error.payload = \"Longitude is more than 180°\"\n return [null, error]\n }\n }\n if (direction == \"N\" || direction == \"S\") {\n error.topic = \"Error with the \"\n error.payload = \"This is not a Longitude!\"\n return [null, error]\n }\n }\n \n if (direction == \"S\" || direction == \"W\") {\n dd = dd * -1\n } // Don't do anything for N or E\n return [dd.toFixed(4), null]\n \n}\n\nfunction ValidateDate(input){\n // Input Format 2020-12-25\n var error = {};\n \n if (! /20\\d{2}-[0-1]\\d-[0-3]\\d/.test(input)){\n error.topic = \"Error with the date\";\n error.payload = \"The date should respect the ISO format YYYY-MM-DD\";\n return [null, error];\n }\n else {\n var date = input.match(/\\d+/g);\n if (!((2000 < date[0]) && (date[0] < 2100))){\n error.topic = \"Error with the date\"\n error.payload = \"The year should be between 2000 and 2100\"\n return [null, error]\n }\n else if (!((0 < date[1]) && (date[1] <= 12))){\n error.topic = \"Error with the date\"\n error.payload = \"The month should be between 01 and 12\"\n return [null, error]\n }\n else if (!((0 < date[2]) && (date[2] <= 31))){\n error.topic = \"Error with the date\"\n error.payload = \"The day should be between 01 and 31\"\n return [null, error]\n }\n }\n return [input.replace(/-/g, ''), null]\n}\n\nfunction ValidateTime(input){\n // Input Format 12:00\n var error = {}\n \n if (! /[0-2]?\\d:[0-5]\\d/.test(input)){\n error.topic = \"Error with the time\"\n error.payload = \"The date should respect the ISO format HH:MM\"\n return [null, error]\n }\n else {\n var time = input.match(/\\d+/g)\n \n if (!((0 <= time[0]) && (time[0] < 24))){\n error.topic = \"Error with the time\"\n error.payload = \"The hours should be 0 and 23.\"\n return [null, error]\n }\n else if (!((0 <= time[1]) && (time[1] < 60))){\n error.topic = \"Error with the time\"\n error.payload = \"The minutes should be between 0 and 59\"\n return [null, error]\n }\n }\n return [input.replace(/:/g, ''), null]\n}\n\n\nvar ret\nvar payload_for_form = {payload:{}}\nmsg.valid = false\n\nif (msg.topic == \"culture_timestamp\"){\n ret = ValidateDate(msg.payload.object_date)\n if (ret[1] !== null){\n msg.topic = ret[1].topic + \" of the sample\"\n msg.payload = ret[1].payload\n return [msg, null]\n }\n global.set(\"object_date\", ret[0])\n \n ret = ValidateTime(msg.payload.object_time)\n if (ret[1] !== null){\n msg.topic = ret[1].topic + \" of the sample\"\n msg.payload = ret[1].payload\n return [msg, null]\n }\n global.set(\"object_time\", ret[0])\n return [{topic: \"Date and time format valid!\", payload: \"All good!\", valid: true}, payload_for_form]\n}\nelse if (msg.topic == \"net_retrieval_location\"){\n ret = ValidateCoordinates(msg.payload.object_lat_end, true);\n if (ret[1] !== null){\n msg.topic = ret[1].topic + \" Latitude\"\n msg.payload = ret[1].payload\n return [msg, null]\n }\n global.set(\"object_lat_end\", ret[0])\n ret = ValidateCoordinates(msg.payload.object_lon_end, false)\n if (ret[1] !== null){\n msg.topic = ret[1].topic + \" Longitude\"\n msg.payload = ret[1].payload\n return [msg, null]\n }\n global.set(\"object_lon_end\", ret[0]);\n \n ret = ValidateDate(msg.payload.object_date_end)\n if (ret[1] !== null){\n msg.topic = ret[1].topic + \" of the sample retrieval\"\n msg.payload = ret[1].payload\n return [msg, null]\n }\n global.set(\"object_date_end\", ret[0])\n \n ret = ValidateTime(msg.payload.object_time_end)\n if (ret[1] !== null){\n msg.topic = ret[1].topic + \" of the sample retrieval\"\n msg.payload = ret[1].payload\n return [msg, null]\n }\n global.set(\"object_time_end\", ret[0])\n}\nelse{\n ret = ValidateCoordinates(msg.payload.object_lat, true);\n if (ret[1] !== null){\n msg.topic = ret[1].topic + \" Latitude\";\n msg.payload = ret[1].payload\n return [msg, null]\n }\n global.set(\"object_lat\", ret[0]);\n payload_for_form.payload[\"object_lat_end\"] = msg.payload.object_lat;\n \n ret = ValidateCoordinates(msg.payload.object_lon, false);\n if (ret[1] !== null){\n msg.topic = ret[1].topic + \" Longitude\"\n msg.payload = ret[1].payload\n return [msg, null]\n }\n global.set(\"object_lon\", ret[0])\n payload_for_form.payload[\"object_lon_end\"] = msg.payload.object_lon;\n\n ret = ValidateDate(msg.payload.object_date)\n if (ret[1] !== null){\n msg.topic = ret[1].topic + \" of the sample\"\n msg.payload = ret[1].payload\n return [msg, null]\n }\n global.set(\"object_date\", ret[0])\n payload_for_form.payload[\"object_date_end\"] = msg.payload.object_date;\n \n ret = ValidateTime(msg.payload.object_time)\n if (ret[1] !== null){\n msg.topic = ret[1].topic + \" of the sample\"\n msg.payload = ret[1].payload\n return [msg, null]\n }\n global.set(\"object_time\", ret[0])\n payload_for_form.payload[\"object_time_end\"] = msg.payload.object_time;\n}\nreturn [{topic: \"Coordinates valid!\", payload: \"All good!\", valid: true}, payload_for_form]\n", + "outputs": 2, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 930, + "y": 620, + "wires": [["c0ce5626.b6c5", "9a18a4b4.178448"], ["56d40584.eff4e4"]], + "inputLabels": ["Location form data"], + "outputLabels": ["Message", "Location validated"] + }, + { + "id": "46eb1bf8.3dc5f4", + "type": "function", + "z": "b771c342.49603", + "name": "Net check", + "func": "var decknet = {}\nvar activation_msg = {}\n\nif (msg.payload.startsWith(\"net_decknet\")){\n decknet.enabled = true;\n}\nelse {\n decknet.enabled = false;\n}\n\nif (msg.payload.startsWith(\"net\")){\n activation_msg.payload = {\"group\":{\"show\":[\"Sample_Net_Metadata\"],\"hide\":[\"Sample_Sample_Location\",\"Sample_Culture_Date_and_Time\"]}};\n}\nelse if (msg.payload != \"culture\" && msg.payload != \"test\"){\n activation_msg.payload = {\"group\":{\"show\":[\"Sample_Sample_Location\"], \"hide\":[\"Sample_Net_Metadata\",\"Sample_Culture_Date_and_Time\"]}};\n}\n\n\nreturn [decknet, activation_msg];", + "outputs": 2, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 1080, + "y": 240, + "wires": [ + ["516375fd.2ed61c", "470e382a.25691", "fbe32ac8.ff6a38"], + ["cbb123ab.fd3428"] + ], + "outputLabels": ["decknet activation", "group display control"] + }, + { + "id": "516375fd.2ed61c", + "type": "ui_text_input", + "z": "b771c342.49603", + "name": "sample_total_flowmeter_start", + "label": "Decknet flowmeter start", + "tooltip": "in L", + "group": "cf5d9f0e.d57e7", + "order": 6, + "width": 5, + "height": 1, + "passthru": false, + "mode": "text", + "delay": "300", + "topic": "sample_total_flowmeter_start", + "sendOnBlur": true, + "className": "", + "topicType": "str", + "x": 1340, + "y": 220, + "wires": [["e9bc112c.eb75f8"]] + }, + { + "id": "470e382a.25691", + "type": "ui_text_input", + "z": "b771c342.49603", + "name": "sample_total_flowmeter_end", + "label": "Decknet flowmeter end", + "tooltip": "in L", + "group": "cf5d9f0e.d57e7", + "order": 7, + "width": 5, + "height": 1, + "passthru": false, + "mode": "text", + "delay": "300", + "topic": "sample_total_flowmeter_end", + "sendOnBlur": true, + "className": "", + "topicType": "str", + "x": 1340, + "y": 260, + "wires": [["e9bc112c.eb75f8"]] + }, + { + "id": "fbe32ac8.ff6a38", + "type": "ui_template", + "z": "b771c342.49603", + "group": "cf5d9f0e.d57e7", + "name": "Decknet flowmeter read", + "order": 5, + "width": 10, + "height": 1, + "format": "
\n

Decknet flowmeter readings

\n

Those values are used to calculate sample_total_volume. Values are in L.

\n
\n", + "storeOutMessages": true, + "fwdInMessages": true, + "resendOnRefresh": true, + "templateScope": "local", + "x": 1330, + "y": 180, + "wires": [[]] + }, + { + "id": "f408a273.4fb538", + "type": "function", + "z": "b771c342.49603", + "name": "get sample_gear_net_opening", + "func": "if (msg.payload.sample_gear_net_opening === null){\n msg.payload = 0;\n global.set(\"sample_gear_net_opening\",msg.payload);\n}\nelse\n{\n msg.payload = msg.payload.sample_gear_net_opening;\n}\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 350, + "y": 320, + "wires": [["e967b844.46aa48"]] + }, + { + "id": "8dff1648.82e42", + "type": "function", + "z": "b771c342.49603", + "name": "get object_depth_max", + "func": "if (msg.payload.object_depth_max === null){\n msg.payload = 0;\n global.set(\"object_depth_max\",msg.payload);\n}\nelse\n{\n msg.payload = msg.payload.object_depth_max;\n}\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 320, + "y": 240, + "wires": [["9c7f7fc9.c8d3a"]] + }, + { + "id": "9f04c5ec.75f3d8", + "type": "function", + "z": "b771c342.49603", + "name": "get object_depth_min", + "func": "if (msg.payload.object_depth_min === null){\n msg.payload = 0;\n global.set(\"object_depth_min\",msg.payload);\n}\nelse\n{\n msg.payload = msg.payload.object_depth_min;\n}\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 320, + "y": 280, + "wires": [["317eeeb7.8d3042"]] + }, + { + "id": "9a18a4b4.178448", + "type": "function", + "z": "b771c342.49603", + "name": "calculate sample_total_volume", + "func": "\n/*object_lat = 33.95 \nobject_lon = 118.4 \nobject_lat_end = 40.6333 \nobject_lon_end = 73.78333\nsample_gear_net_opening = 40*/\n\n// Copyright 1997 Ed Williams. All rights reserved\n// Adapted by Romain Bazile - Ocean Trotter - 01-2021\n\ndecpl=4 // Dec places of minutes output\n\nellipse = {\"name\":\"WSG84\", \"a\":6378.137/1.852, \"invf\":298.257223563}\n\nfunction ComputeDistance(lat1, lon1, lat2, lon2){\n var d,crs12,crs21\n var argacos\n var a,invf\n \n // lat and lon in radian\n lat1=(Math.PI/180)*lat1\n lat2=(Math.PI/180)*lat2\n lon1=(Math.PI/180)*lon1\n lon2=(Math.PI/180)*lon2\n \n //alert(\"lat1=\" + lat1 + \"lon1=\" + lon1 +\"\\nlat2=\" +lat2+ \"lon2=\"+lon2)\n \n /* get distance conversion factor */\n dc=1.852 //km\n //alert(\"dc=\" +dc)\n \n //showProps(ellipse,\"ellipse\")\n \n // elliptic code\n d=crsdist_ell(lat1,-lon1,lat2,-lon2,ellipse) // ellipse uses East negative\n d=d*dc // go to physical units\n \n //alert(\"d=\"+d+\" crs12=\"+crs12+\" crs21=\"+crs21)\n return d\n}\n\nfunction crsdist(lat1,lon1,lat2,lon2){ // radian args\n /* compute course and distance (spherical) */\n if ((lat1+lat2===0) && (Math.abs(lon1-lon2)==Math.PI) && \n (Math.abs(lat1) != (Math.PI/180)*90)){\t\n \talert(\"Course between antipodal points is undefined\")\n }\n \n d = Math.acos(Math.sin(lat1)*Math.sin(lat2)+Math.cos(lat1)*Math.cos(lat2)*Math.cos(lon1-lon2))\n return d\n}\n\nfunction crsdist_ell(glat1,glon1,glat2,glon2,ellipse){\n // glat1 initial geodetic latitude in radians N positive \n // glon1 initial geodetic longitude in radians E positive \n // glat2 final geodetic latitude in radians N positive \n // glon2 final geodetic longitude in radians E positive \n a=ellipse.a\n f=1/ellipse.invf\n //alert(\"a=\"+a+\" f=\"+f)\n var r, tu1, tu2, cu1, su1, cu2, s1, b1, f1\n var x, sx, cx, sy, cy,y, sa, c2a, cz, e, c, d\n var EPS= 0.00000000005\n var faz, baz, s\n var iter=1\n var MAXITER=100\n if ((glat1+glat2===0) && (Math.abs(glon1-glon2)==Math.PI)){\n alert(\"Course and distance between antipodal points is undefined\")\n glat1=glat1+0.00001 // allow algorithm to complete\n }\n if (glat1==glat2 && (glon1==glon2 || Math.abs(Math.abs(glon1-glon2)-2*Math.PI) < EPS)){\n alert(\"Points 1 and 2 are identical- course undefined\")\n out=new MakeArray(0)\n out.d=0\n out.crs12=0\n out.crs21=Math.PI\n return out\n }\n r = 1 - f\n tu1 = r * Math.tan (glat1)\n tu2 = r * Math.tan (glat2)\n cu1 = 1 / Math.sqrt (1 + tu1 * tu1)\n su1 = cu1 * tu1\n cu2 = 1 / Math.sqrt (1 + tu2 * tu2)\n s1 = cu1 * cu2\n b1 = s1 * tu2\n f1 = b1 * tu1\n x = glon2 - glon1\n d = x + 1 // force one pass\n while ((Math.abs(d - x) > EPS) && (iter < MAXITER))\n {\n iter=iter+1\n sx = Math.sin (x)\n // alert(\"sx=\"+sx)\n cx = Math.cos (x)\n tu1 = cu2 * sx\n tu2 = b1 - su1 * cu2 * cx\n sy = Math.sqrt(tu1 * tu1 + tu2 * tu2)\n cy = s1 * cx + f1\n y = atan2 (sy, cy)\n sa = s1 * sx / sy\n c2a = 1 - sa * sa\n cz = f1 + f1\n if (c2a > 0)\n cz = cy - cz / c2a\n e = cz * cz * 2 - 1\n c = ((-3 * c2a + 4) * f + 4) * c2a * f / 16\n d = x\n x = ((e * cy * c + cz) * sy * c + y) * sa\n x = (1 - c) * x * f + glon2 - glon1\n }\n x = Math.sqrt ((1 / (r * r) - 1) * c2a + 1)\n x +=1\n x = (x - 2) / x\n c = 1 - x\n c = (x * x / 4 + 1) / c\n d = (0.375 * x * x - 1) * x\n x = e * cy\n d = ((((sy*sy*4-3)*(1-e-e)*cz*d/6-x)*d/4+cz)*sy*d+y)*c*a*r\n if (Math.abs(iter-MAXITER)0) && (y>=0)){ out= Math.atan(y/x)}\n if ((x >0) && (y<0)) { out= Math.atan(y/x)+2*Math.PI}\n if ((x===0) && (y>0)) { out= Math.PI/2}\n if ((x===0) && (y<0)) { out= 3*Math.PI/2} \n if ((x===0) && (y===0)) {\n alert(\"atan2(0,0) undefined\")\n out= 0\n } \n return out\n}\n\nfunction showProps(obj,objName){\n var result=\"\"\n for (var i in obj){\n result +=objName + \".\" + i + \" = \" + obj[i] + \"\\n\"\n }\n alert(result)\n}\n\n\nif (msg.valid){\n msg.topic=\"sample_total_volume\"\n \n var object_lat_end = global.get(\"object_lat_end\")\n var object_lon_end = global.get(\"object_lon_end\")\n var sample_sampling_gear = global.get(\"sample_sampling_gear\")\n \n if (sample_sampling_gear.startsWith(\"net\") && sample_sampling_gear != \"net_decknet\") {\n if (!(isNaN(object_lat_end) && isNaN(object_lon_end))){\n var object_lat = global.get(\"object_lat\")\n var object_lon = global.get(\"object_lon\")\n var sample_gear_net_opening = global.get(\"sample_gear_net_opening\");\n\n distance_km = ComputeDistance(object_lat, object_lon, object_lat_end, object_lon_end)\n\n sample_total_volume = distance_km*(Math.PI*(sample_gear_net_opening/2)*(sample_gear_net_opening/2)) // liters\n sample_total_volume = Math.round(sample_total_volume + Number.EPSILON)\n msg.payload = sample_total_volume\n return msg\n }\n }\n}", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 930, + "y": 760, + "wires": [["4f6afc5a.81e454"]] + }, + { + "id": "e73fd87d.d24e4", + "type": "function", + "z": "b771c342.49603", + "name": "get acq_minimum_mesh", + "func": "msg.payload = msg.payload.acq_minimum_mesh;\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 330, + "y": 360, + "wires": [["1aad56b31b5647ce"]] + }, + { + "id": "489c8e06.cc7d6", + "type": "function", + "z": "b771c342.49603", + "name": "get acq_maximum_mesh", + "func": "msg.payload = msg.payload.acq_maximum_mesh;\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 330, + "y": 400, + "wires": [["10eb31a2d7a6590c"]] + }, + { + "id": "58de1340.3cc354", + "type": "ui_text_input", + "z": "b771c342.49603", + "name": "sample_dilution_factor", + "label": "Concentration Factor", + "tooltip": "0.5 if diluted by two; 2 if concentrated by a factor 2", + "group": "3e1ba03d.f01d8", + "order": 13, + "width": 10, + "height": 1, + "passthru": true, + "mode": "number", + "delay": "300", + "topic": "sample_dilution_factor", + "sendOnBlur": true, + "className": "", + "topicType": "str", + "x": 640, + "y": 480, + "wires": [["9f501f49.45645"]] + }, + { + "id": "4f6afc5a.81e454", + "type": "ui_text_input", + "z": "b771c342.49603", + "name": "sample_total_volume", + "label": "Filtered volume (in L)", + "tooltip": "Calculated or hand filled", + "group": "3e1ba03d.f01d8", + "order": 11, + "width": 0, + "height": 0, + "passthru": true, + "mode": "text", + "delay": "300", + "topic": "sample_total_volume", + "sendOnBlur": true, + "className": "", + "topicType": "str", + "x": 1220, + "y": 760, + "wires": [["e1f2f6eb.fe1dd"]] + }, + { + "id": "e1f2f6eb.fe1dd", + "type": "function", + "z": "b771c342.49603", + "name": "set global", + "func": "global.set(msg.topic,msg.payload);", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "x": 1420, + "y": 760, + "wires": [[]] + }, + { + "id": "e9bc112c.eb75f8", + "type": "function", + "z": "b771c342.49603", + "name": "Calculate volume", + "func": "if (msg.topic == \"sample_total_flowmeter_start\"){\n context.set(\"sample_total_flowmeter_start\", msg.payload);\n}\nif (msg.topic == \"sample_total_flowmeter_end\"){\n context.set(\"sample_total_flowmeter_end\", msg.payload);\n}\n\nif (context.keys().length == 2){\n sample_total_volume = context.get(\"sample_total_flowmeter_end\") - context.get(\"sample_total_flowmeter_start\");\n msg.topic=\"sample_total_volume\"\n msg.payload=sample_total_volume\n return msg\n}\n", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "x": 1610, + "y": 240, + "wires": [["4f6afc5a.81e454"]] + }, + { + "id": "cdd4181922eecf11", + "type": "ui_text_input", + "z": "b771c342.49603", + "name": "sample_speed_through_water", + "label": "Speed Through Water (kts)", + "tooltip": "in knots", + "group": "cf5d9f0e.d57e7", + "order": 2, + "width": 10, + "height": 1, + "passthru": true, + "mode": "number", + "delay": "300", + "topic": "sample_speed_through_water", + "sendOnBlur": true, + "className": "", + "topicType": "str", + "x": 610, + "y": 520, + "wires": [["9f501f49.45645"]] + }, + { + "id": "1aad56b31b5647ce", + "type": "ui_text_input", + "z": "b771c342.49603", + "name": "acq_minimum_mesh", + "label": "Minimal fraction size (μm)", + "tooltip": "Net mesh pore size or minimal filtration mesh pore size", + "group": "3e1ba03d.f01d8", + "order": 7, + "width": 5, + "height": 1, + "passthru": true, + "mode": "number", + "delay": "300", + "topic": "acq_minimum_mesh", + "sendOnBlur": true, + "className": "", + "topicType": "str", + "x": 640, + "y": 360, + "wires": [["9f501f49.45645"]] + }, + { + "id": "10eb31a2d7a6590c", + "type": "ui_text_input", + "z": "b771c342.49603", + "name": "acq_maximum_mesh", + "label": "Maximal fraction size (μm)", + "tooltip": "Maximal filtration mesh pore size", + "group": "3e1ba03d.f01d8", + "order": 8, + "width": 5, + "height": 1, + "passthru": true, + "mode": "number", + "delay": "300", + "topic": "acq_maximum_mesh", + "sendOnBlur": true, + "className": "", + "topicType": "str", + "x": 640, + "y": 400, + "wires": [["9f501f49.45645"]] + }, + { + "id": "3ac7b631f5d8ef90", + "type": "function", + "z": "b771c342.49603", + "name": "Culture check", + "func": "var activation_msg = {}\nvar date_msg = {}\nvar timestamp=new Date().toISOString();\n\nif (msg.payload === \"culture\"){\n activation_msg.payload = {\"group\":{\"show\":[\"Sample_Culture_Date_and_Time\"],\"hide\":[\"Sample_Sample_Location\", \"Sample_Net_Metadata\"]}};\n global.set(\"object_lat\", \"-90.0000\")\n global.set(\"object_lon\", \"0.0000\")\n date_msg.payload = {\"object_date\": timestamp.split('T')[0],\n \"object_time\": timestamp.split('T')[1].split('.')[0]}\n return [activation_msg, date_msg];\n}\nelse if (msg.payload === \"test\"){\n activation_msg.payload = {\"group\":{\"hide\":[\"Sample_Culture_Date_and_Time\", \"Sample_Sample_Location\", \"Sample_Net_Metadata\"]}};\n global.set(\"object_lat\", \"-90.0000\")\n global.set(\"object_lon\", \"0.0000\")\n global.set(\"object_date\", timestamp.split('T')[0])\n global.set(\"object_time\", timestamp.split('T')[1].split('.')[0])\n return [activation_msg, null];\n}\nelse{\n return [null, null]\n}\n\n", + "outputs": 2, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 1100, + "y": 320, + "wires": [["cbb123ab.fd3428"], ["05c6aff2afbd69cf"]], + "outputLabels": ["decknet activation", ""] + }, + { + "id": "05c6aff2afbd69cf", + "type": "ui_form", + "z": "b771c342.49603", + "name": "culture_timestamp", + "label": "Culture timestamp", + "group": "7bc0a4c416e4545c", + "order": 1, + "width": 0, + "height": 0, + "options": [ + { + "label": "Date (YYYY-MM-DD, UTC)", + "value": "object_date", + "type": "text", + "required": true, + "rows": null + }, + { + "label": "Time (HH:MM(:SS), UTC 24h)", + "value": "object_time", + "type": "text", + "required": true, + "rows": null + } + ], + "formValue": { + "object_date": "", + "object_time": "" + }, + "payload": "", + "submit": "Validate", + "cancel": "Reset", + "topic": "culture_timestamp", + "topicType": "str", + "splitLayout": false, + "className": "", + "x": 650, + "y": 700, + "wires": [["14658615.47c862", "f8044c35996322e6"]] + }, + { + "id": "a9fb1f4b83fc25a7", + "type": "change", + "z": "b771c342.49603", + "name": "Repopulate input fields", + "rules": [ + { + "t": "set", + "p": "payload", + "pt": "msg", + "to": "payload", + "tot": "msg" + } + ], + "action": "", + "property": "", + "from": "", + "to": "", + "reg": false, + "x": 400, + "y": 580, + "wires": [["c33f1124.af6688"]] + }, + { + "id": "ad54b89540460d27", + "type": "change", + "z": "b771c342.49603", + "name": "Repopulate input fields", + "rules": [ + { + "t": "set", + "p": "payload", + "pt": "msg", + "to": "payload", + "tot": "msg" + } + ], + "action": "", + "property": "", + "from": "", + "to": "", + "reg": false, + "x": 400, + "y": 620, + "wires": [["358908cd.416ab"]] + }, + { + "id": "c21bf0244e67e40a", + "type": "change", + "z": "b771c342.49603", + "name": "Repopulate input fields", + "rules": [ + { + "t": "set", + "p": "payload", + "pt": "msg", + "to": "payload", + "tot": "msg" + } + ], + "action": "", + "property": "", + "from": "", + "to": "", + "reg": false, + "x": 400, + "y": 660, + "wires": [["56d40584.eff4e4"]] + }, + { + "id": "f8044c35996322e6", + "type": "change", + "z": "b771c342.49603", + "name": "Repopulate input fields", + "rules": [ + { + "t": "set", + "p": "payload", + "pt": "msg", + "to": "payload", + "tot": "msg" + } + ], + "action": "", + "property": "", + "from": "", + "to": "", + "reg": false, + "x": 400, + "y": 700, + "wires": [["05c6aff2afbd69cf"]] + }, + { + "id": "8b48a02877b7b6d6", + "type": "inject", + "z": "b771c342.49603", + "name": "", + "props": [ + { + "p": "payload" + } + ], + "repeat": "", + "crontab": "", + "once": true, + "onceDelay": 0.1, + "topic": "", + "payload": "1", + "payloadType": "num", + "x": 270, + "y": 480, + "wires": [["58de1340.3cc354"]] + }, + { + "id": "6a84252a.d52a0c", + "type": "ui_template", + "z": "bccd1f23.87219", + "group": "833bc5bb.217ba8", + "name": "Stream Pi Camera", + "order": 1, + "width": 18, + "height": 14, + "format": "
\n \"If\n
", + "storeOutMessages": true, + "fwdInMessages": true, + "resendOnRefresh": false, + "templateScope": "local", + "className": "", + "x": 610, + "y": 40, + "wires": [[]] + }, + { + "id": "dc48dc42.98d18", + "type": "function", + "z": "bccd1f23.87219", + "name": "set global", + "func": "global.set(msg.topic,msg.payload);", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "x": 880, + "y": 440, + "wires": [[]] + }, + { + "id": "811cd88c.daf528", + "type": "ui_button", + "z": "bccd1f23.87219", + "name": "down", + "group": "fbd92986.1028c8", + "order": 8, + "width": 4, + "height": 1, + "passthru": true, + "label": "", + "tooltip": "", + "color": "", + "bgcolor": "", + "icon": "fa-angle-double-down fa-3x", + "payload": "DOWN", + "payloadType": "str", + "topic": "actuator/focus", + "x": 550, + "y": 800, + "wires": [["65ad39d.b6d4d48"]] + }, + { + "id": "edda4df4.76de2", + "type": "ui_button", + "z": "bccd1f23.87219", + "name": "up", + "group": "fbd92986.1028c8", + 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acq_magnification}, {payload: process_pixel}, {payload: sug_min}, {payload: sug_max}];", + "outputs": 5, + "timeout": "", + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 1080, + "y": 120, + "wires": [[], [], [], [], []], + "inputLabels": ["acq_fnumber_objective"], + "outputLabels": [ + "acq_magnification", + "process_pixel", + "sug_min", + "sug_max", + "" + ] + }, + { + "id": "f61aaed5.1e64", + "type": "ui_button", + "z": "bccd1f23.87219", + "name": "", + "group": "7a0b4877.a5d268", + "order": 1, + "width": 2, + "height": 1, + "passthru": false, + "label": "Previous", + "tooltip": "", + "color": "#097479", + "bgcolor": "white", + "icon": "keyboard_return", + "payload": "{\"tab\":\"Sample\"}", + "payloadType": "json", + "topic": "", + "x": 140, + "y": 1140, + "wires": [["6c792043.b6ff9"]] + }, + { + "id": "9ba6ec0a.22c96", + "type": "ui_button", + "z": "bccd1f23.87219", + "name": "", + "group": "7a0b4877.a5d268", + "order": 2, + "width": 2, + "height": 1, + 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\n \n \n \n \n \n \n \n \n \n
\n

Sample

\n

id:

\n

project:\n

\n

ship:

\n

operator:\n

\n

sampling gear:\n

\n

concentrated volume:\n

\n

gear net opening:\n

\n

total volume filtered:\n

\n 		\n

Acquisition

\n

id:

\n

instrument:\n

\n

instrument id:\n

\n

camera:

\n

celltype: \n

\n

minimum mesh:\n

\n

maximum mesh:\n

\n

min esd: \n

\n

max esd: \n

\n

volume:

\n

magnification:\n

\n

fnumber objective:\n

\n

software: \n

\n
\n

Object

\n

latitude: \n

\n

longitude: \n

\n

latitude end:\n

\n

longitude end:\n

\n

date:

\n

time:

\n

date end:\n

\n

time end:\n

\n

depth min:\n

\n

depth max:\n

\n 		\n

Process

\n

pixel: \n

\n

id:

\n
\n
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(acq_minimum_mesh === undefined || acq_minimum_mesh === \"\") {\n msg.topic = \"Missing entry :\";\n msg.payload = \"Lower fraction size\";\n return [null, msg];\n} else if (acq_maximum_mesh === undefined || acq_maximum_mesh === \"\") {\n msg.topic = \"Missing entry :\";\n msg.payload = \"Upper fraction size\";\n return [null, msg];\n} else if (imaging_pump_volume === undefined || imaging_pump_volume === \"\" || imaging_pump_volume === null) {\n msg.topic = \"Missing entry :\";\n msg.payload = \"Volume inbetween images\";\n return [null, msg];\n} else if (acq_id === undefined || acq_id === \"\") {\n msg.topic = \"Missing entry :\";\n msg.payload = \"Acquisition ID\";\n return [null, msg];\n} else if (nb_frame === undefined || nb_frame === \"\" || nb_frame === null) {\n msg.topic = \"Missing entry :\";\n msg.payload = \"Number of image to save\";\n return [null, msg];\n} else if (pump_direction === undefined || pump_direction === \"\" || pump_direction === null) {\n msg.topic = 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"highlight": "", + "sendall": true, + "outputs": 1, + "ok": "OK", + "cancel": "", + "raw": false, + "topic": "", + "name": "", + "x": 890, + "y": 520, + "wires": [[]] + }, + { + "id": "c3e50240.82aa58", + "type": "mqtt out", + "z": "baa1e3d9.cb29d", + "name": "", + "topic": "", + "qos": "", + "retain": "", + "broker": "8dc3722c.06efa8", + "x": 1130, + "y": 420, + "wires": [] + }, + { + "id": "3a4450b1.4459a8", + "type": "ui_button", + "z": "baa1e3d9.cb29d", + "name": "Stop Acquisition", + "group": "4322c187.e73e5", + "order": 11, + "width": 5, + "height": 1, + "passthru": true, + "label": "STOP ACQUISITION", + "tooltip": "", + "color": "", + "bgcolor": "#AD1625", + "icon": "cancel", + "payload": "{\"action\":\"stop\"}", + "payloadType": "json", + "topic": "imager/image", + "x": 420, + "y": 480, + "wires": [["d74210ef.edc15"]] + }, + { + "id": "d74210ef.edc15", + "type": "mqtt out", + "z": "baa1e3d9.cb29d", + "name": "", + "topic": "", + "qos": "", + "retain": "", + "broker": "8dc3722c.06efa8", + "x": 610, + "y": 480, + "wires": [] + }, + { + "id": "bb62da8a.ebc328", + "type": "ui_switch", + "z": "baa1e3d9.cb29d", + "name": "Pump direction", + "label": "Pump direction", + "tooltip": "BACKWARD / FORWARD", + "group": "4322c187.e73e5", + "order": 9, + "width": 5, + "height": 1, + "passthru": true, + "decouple": "false", + "topic": "pump_direction", + "style": "", + "onvalue": "FORWARD", + "onvalueType": "str", + "onicon": "", + "oncolor": "", + "offvalue": "BACKWARD", + "offvalueType": "str", + "officon": "", + "offcolor": "", + "x": 420, + "y": 520, + "wires": [["6b2239f3.41fa3"]] + }, + { + "id": "52ea7d01.711034", + "type": "function", + "z": "baa1e3d9.cb29d", + "name": "Encapsulate config", + "func": "msg.payload = {\n\t\"action\": \"update_config\",\n\t\"config\": {\n \t\"description\": {\n \t\t\"sample_project\": \"Project's name\",\n \t\t\"sample_id\": \"Sample ID\",\n \t\t\"sample_uuid\": \"Sample UUID (Autogenerated)\",\n \t\t\"sample_ship\": \"Ship's name\",\n \t\t\"sample_operator\": \"Operator's name\",\n \t\t\"sample_sampling_gear\": \"Sampling gear used\",\n \t\t\"sample_concentrated_sample_volume\": \"Volume of concentrated sample, in mL\",\n \t\t\"sample_total_volume\": \"Total volume filtered by the net used, in L\",\n \t\t\"sample_dilution_factor\": \"Dilution factor of the sample, 0.5 if diluted by 2, 2 if concentrated by 2\",\n \t\t\"sample_speed_through_water\": \"Speed of the boat through water when sampling, in kts\",\n \t\t\"acq_id\": \"Acquisition ID\",\n \t\t\"acq_uuid\": \"Acquisition UUID (Autogenerated)\",\n \t\t\"acq_instrument\": \"Instrument type\",\n \t\t\"acq_instrument_id\": \"Instrument ID\",\n \t\t\"acq_celltype\": \"Flow cell dimension thickness, in µm\",\n \t\t\"acq_minimum_mesh\": \"Minimum filtration mesh size, in µm\",\n \t\t\"acq_maximum_mesh\": \"Maximum filtration mesh size, in µm\",\n \t\t\"acq_min_esd\": \"\",\n \t\t\"acq_max_esd\": \"\",\n \t\t\"acq_volume\": \"Pumped volume, in mL\",\n\t\t \"acq_imaged_volume\": \"Total imaged volume, in mL\",\n \t\t\"acq_magnification\": \"Optical magnification\",\n \t\t\"acq_fnumber_objective\": \"Focal length of the objective, in mm\",\n \t\t\"acq_camera_name\": \"Name of the camera used\",\n \t\t\"acq_nb_frame\": \"Number of picture taken\",\n \"acq_local_datetime\": \"Instrument local datetime\",\n \"acq_camera_resolution\": \"Resolution of the images\",\n \"acq_camera_iso\": \"ISO Number of the images\",\n \"acq_camera_shutter_speed\": \"Shutter speed of the images, in µs\",\n \"acq_software\": \"Software version number\",\n \t\t\"object_date\": \"Sample collection date (or beginning if using a net)\",\n \t\t\"object_time\": \"Sample collection time (or beginning if using a net)\",\n \t\t\"object_lat\": \"Sample collection latitude (or beginning if using a net)\",\n \t\t\"object_lon\": \"Sample collection longitude (or beginning if using a net)\",\n \t\t\"object_depth_min\": \"Sample collection minimal depth, in m\",\n \t\t\"object_depth_max\": \"Sample collection maximum depth, in m\",\n \t\t\"process_pixel\": \"Pixel imaging resolution, in µm/pixel\",\n \t\t\"process_datetime\": \"Segmentation timestamp\",\n \t\t\"process_id\": \"Segmentation ID\",\n \t\t\"process_uuid\": \"Segmentation UUID (Autogenerated)\",\n \t\t\"process_source\": \"Code source link of the executed code\",\n \t\t\"process_commit\": \"Version reference of the executed code\",\n \t\t\"sample_gear_net_opening\": \"Sample mouth opening dimension, in mm\",\n \t\t\"object_date_end\": \"Sample end collection date when using a net\",\n \t\t\"object_time_end\": \"Sample end collection time when using a net\",\n \t\t\"object_lat_end\": \"Sample end collection latitude when using a net\",\n \t\t\"object_lon_end\": \"Sample end collection longitude when using a net\",\n \t},\n\t\t\"sample_project\": global.get(\"sample_project\"),\n\t\t\"sample_id\": global.get(\"sample_project\") + \"_\" + global.get(\"sample_id\"),\n\t\t\"sample_ship\": global.get(\"sample_ship\"),\n\t\t\"sample_operator\": global.get(\"sample_operator\"),\n\t\t\"sample_sampling_gear\": global.get(\"sample_sampling_gear\"),\n\t\t\"sample_concentrated_sample_volume\": global.get(\"sample_concentrated_sample_volume\"),\n\t\t\"sample_total_volume\": global.get(\"sample_total_volume\"),\n\t\t\"sample_dilution_factor\": global.get(\"sample_dilution_factor\"),\n\t\t\"sample_speed_through_water\": global.get(\"sample_speed_through_water\"),\n\n\t\t\"acq_id\": global.get(\"sample_project\") + \"_\" + global.get(\"sample_id\")+ \"_\" + global.get(\"acq_id\"),\n\t\t\"acq_instrument\": global.get(\"acq_instrument\"),\n\t\t\"acq_instrument_id\": global.get(\"acq_instrument_id\"),\n\t\t\"acq_celltype\": global.get(\"acq_celltype\"),\n\t\t\"acq_minimum_mesh\": global.get(\"acq_minimum_mesh\"),\n\t\t\"acq_maximum_mesh\": global.get(\"acq_maximum_mesh\"),\n\t\t\"acq_min_esd\": global.get(\"acq_min_esd\"),\n\t\t\"acq_max_esd\": global.get(\"acq_max_esd\"),\n\t\t\"acq_volume\": global.get(\"acq_volume\"),\n\t\t\"acq_imaged_volume\": global.get(\"acq_imaged_volume\"),\n\t\t\"acq_magnification\": global.get(\"acq_magnification\"),\n\t\t\"acq_fnumber_objective\": global.get(\"acq_fnumber_objective\"),\n\t\t\"acq_camera\": global.get(\"acq_camera\"),\n\t\t\"acq_nb_frame\": global.get(\"nb_frame\"),\n\t\t\"acq_software\": global.get(\"acq_software\"),\n\n\t\t\"object_date\": global.get(\"object_date\"),\n\t\t\"object_time\": global.get(\"object_time\"),\n\t\t\"object_lat\": global.get(\"object_lat\"),\n\t\t\"object_lon\": global.get(\"object_lon\"),\n\t\t\"object_depth_min\": global.get(\"object_depth_min\"),\n\t\t\"object_depth_max\": global.get(\"object_depth_max\"),\n\n\t\t\"process_pixel\": global.get(\"process_pixel\"),\n\t\t\"process_source\": global.get(\"process_source\"),\n\t\t\"process_commit\": global.get(\"process_commit\")\n\t}\n};\n\nif (msg.payload.config.sample_sampling_gear.startsWith(\"net\")) 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"status/imager", + "vt": "str" + } + ], + "checkall": "true", + "repair": false, + "outputs": 4, + "x": 320, + "y": 800, + "wires": [ + ["a46a1e7f.88a92", "6742014e.1bb238"], + ["c516d9ea.f7f6e", "6742014e.1bb238"], + ["6742014e.1bb238"], + ["307c851e.fb0f7a", "2b9d6988.d84836"] + ] + }, + { + "id": "2b009bd7.c07004", + "type": "ui_text", + "z": "baa1e3d9.cb29d", + "group": "70de8209.68416c", + "order": 3, + "width": 10, + "height": 2, + "name": "imager", + "label": "Imager status:", + "format": "{{msg.payload.status}}", + "layout": "col-center", + "x": 770, + "y": 740, + "wires": [] + }, + { + "id": "c516d9ea.f7f6e", + "type": "ui_text", + "z": "baa1e3d9.cb29d", + "group": "70de8209.68416c", + "order": 1, + "width": 5, + "height": 1, + "name": "focus", + "label": "Focus status:", + "format": "{{msg.payload.status}}", + "layout": "col-center", + "x": 770, + "y": 700, + "wires": [] + }, + { + "id": "a46a1e7f.88a92", + "type": "ui_text", + "z": "baa1e3d9.cb29d", + "group": "70de8209.68416c", + "order": 2, + "width": 5, + "height": 1, + "name": "pump", + "label": "Pump status:", + "format": "{{msg.payload.status}}", + "layout": "col-center", + "x": 770, + "y": 660, + "wires": [] + }, + { + "id": "bb628f8d.98f108", + "type": "link in", + "z": "baa1e3d9.cb29d", + "name": "Status for fluidic module", + "links": ["58f2e0f.4e8b12"], + "x": 175, + "y": 800, + "wires": [["999065ca.27edb8"]] + }, + { + "id": "307c851e.fb0f7a", + "type": "switch", + "z": "baa1e3d9.cb29d", + "name": "Imaging state", + "property": "payload", + "propertyType": "msg", + "rules": [ + { + "t": "jsonata_exp", + "v": "$contains(msg.payload.status, \"jpg\")\t", + "vt": "jsonata" + }, + { + "t": "else" + } + ], + "checkall": "false", + "repair": false, + "outputs": 2, + "x": 540, + "y": 880, + "wires": [["db8e3dde.44efb8"], ["6742014e.1bb238"]] + }, + { + "id": "db8e3dde.44efb8", + "type": "function", + "z": "baa1e3d9.cb29d", + "name": "img_counter", + "func": "img_counter=flow.get('img_counter')\nif (img_counter === undefined || img_counter === \"\"){\n img_counter = 0\n}\nimg_counter=img_counter+1\nflow.set('img_counter',img_counter)\nmsg.payload = img_counter\nmsg.payload = (100 * img_counter/global.get('nb_frame')).toFixed(2)\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 770, + "y": 860, + "wires": [["1a2e721a.f5e876"]] + }, + { + "id": "59164d65.e7993c", + "type": "ui_toast", + "z": "baa1e3d9.cb29d", + "position": "top right", + "displayTime": "5", + "highlight": "", + "sendall": true, + "outputs": 0, + "ok": "OK", + "cancel": "", + "raw": false, + "topic": "", + "name": "", + "x": 1270, + "y": 900, + "wires": [] + }, + { + "id": "8c7348aa.1962e8", + "type": "template", + "z": "baa1e3d9.cb29d", + "name": "Create sentence", + "field": "payload", + "fieldType": "msg", + "format": "handlebars", + "syntax": "mustache", + "template": "The {{topic}} is {{payload.status}}", + "output": "str", + "x": 1050, + "y": 900, + "wires": [["59164d65.e7993c"]] + }, + { + "id": "6742014e.1bb238", + "type": "change", + "z": "baa1e3d9.cb29d", + "name": "Remove high-level topic", + "rules": [ + { + "t": "change", + "p": "topic", + "pt": "msg", + "from": "status/", + "fromt": "str", "to": "", - "reg": false, - "x": 490, - "y": 680, - "wires": [ - [ - "6af85f0e0fc21b11" - ] - ] - }, - { - "id": "f80babd43aa7cce4", - "type": "change", - "z": "eaae323a.31b3", - "name": "Show home buttons", - "rules": [ - { - "t": "set", - "p": "payload", - "pt": "msg", - "to": "{\"group\":{\"hide\":[\"Home_Setup\"],\"show\":[\"Home_Group_1\",\"Home_Group_2\",\"Home_Group_3\",\"Home_Group_4\",\"Home_Group_5\",\"Home_Group_6\"]}}", - "tot": "json" - } - ], - "action": "", - "property": "", - "from": "", + "tot": "str" + } + ], + "action": "", + "property": "", + "from": "", + "to": "", + "reg": false, + "x": 810, + "y": 900, + "wires": [["8c7348aa.1962e8"]] + }, + { + "id": "1a2e721a.f5e876", + "type": "ui_gauge", + "z": "baa1e3d9.cb29d", + "name": "progress donut", + "group": "b5d61bc7.54fe48", + "order": 3, + "width": 6, + "height": 3, + "gtype": "donut", + "title": "", + "label": "%", + "format": "{{value}}", + "min": 0, + "max": "100", + "colors": ["#ffa83f", "#e6ff02", "#00dfe9"], + "seg1": "50", + "seg2": "75", + "x": 1260, + "y": 860, + "wires": [] + }, + { + "id": "9bd72495.a8a098", + "type": "ui_text", + "z": "baa1e3d9.cb29d", + "group": "4322c187.e73e5", + "order": 5, + "width": 5, + "height": 1, + "name": "Total imaged volume", + "label": "Total imaged volume", + "format": "{{msg.payload}}", + "layout": "col-center", + "x": 1200, + "y": 100, + "wires": [] + }, + { + "id": "99b11fe4.2795d", + "type": "function", + "z": "baa1e3d9.cb29d", + "name": "imaged volume calc", + "func": "camera = global.get(\"acq_camera\");\ncell = global.get(\"acq_celltype\");\nnb_frame = global.get(\"nb_frame\");\nprocess_pixel = global.get(\"process_pixel\");\n\nvar volume = 0\nif (camera == \"HQ Camera\"){\n volume = nb_frame * (process_pixel*4056*process_pixel*3040*cell/1000000000) / 1000;\n}\nelse if (camera == \"Camera v2.1\"){\n volume = nb_frame * (process_pixel*3280*process_pixel*2464*cell/1000000000) / 1000;\n}\nelse{\n msg.payload = \"The camera is not known to this system\";\n return msg;\n}\n\nglobal.set(\"acq_imaged_volume\", volume.toFixed(4))\n\nmsg.payload = volume.toFixed(2) + \" mL\"\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 960, + "y": 100, + "wires": [["9bd72495.a8a098"]], + "info": "### Focusing\n##### focus.py `nb_step` `orientation`\n\n- `nb_step` : **integer** (from 1 to 100000) - number of step to perform by the stage (about 31um/step)\n- `orientation` : **string** - orientation of the focus either `up` or `down`\n\nExample:\n\n python3.7 $HOME/PlanktoScope/scripts/focus.py 650 up\n" + }, + { + "id": "8e16aa2f.e40398", + "type": "ui_text", + "z": "baa1e3d9.cb29d", + "group": "4322c187.e73e5", + "order": 7, + "width": 5, + "height": 1, + "name": "Total pumped volume", + "label": "Total pumped volume", + "format": "{{msg.payload}} mL", + "layout": "col-center", + "x": 1200, + "y": 260, + "wires": [] + }, + { + "id": "67091ac0.8f9f6c", + "type": "function", + "z": "baa1e3d9.cb29d", + "name": "acq_volume calc", + "func": "var imaging_pump_volume = global.get(\"imaging_pump_volume\");\nvar nb_frame = global.get(\"nb_frame\");\nvar acq_volume = 0\n\nacq_volume = (Number(nb_frame)*Number(imaging_pump_volume)).toFixed(2)\nglobal.set(\"acq_volume\", acq_volume)\n\nmsg.payload = acq_volume\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "x": 950, + "y": 260, + "wires": [["8e16aa2f.e40398"]], + "info": "### Focusing\n##### focus.py `nb_step` `orientation`\n\n- `nb_step` : **integer** (from 1 to 100000) - number of step to perform by the stage (about 31um/step)\n- `orientation` : **string** - orientation of the focus either `up` or `down`\n\nExample:\n\n python3.7 $HOME/PlanktoScope/scripts/focus.py 650 up\n" + }, + { + "id": "2b9d6988.d84836", + "type": "switch", + "z": "baa1e3d9.cb29d", + "name": "", + "property": "payload", + "propertyType": "msg", + "rules": [ + { + "t": "hask", + "v": "status", + "vt": "str" + }, + { + "t": "hask", + "v": "camera_name", + "vt": "str" + } + ], + "checkall": "true", + "repair": false, + "outputs": 2, + "x": 650, + "y": 760, + "wires": [["2b009bd7.c07004"], ["3bbb756a.84190a"]] + }, + { + "id": "3bbb756a.84190a", + "type": "function", + "z": "baa1e3d9.cb29d", + "name": "set camera name", + "func": "global.set(\"acq_camera\", msg.payload.camera_name);\n\nmsg.payload = msg.payload.camera_name;\n\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "x": 810, + "y": 780, + "wires": [["559a8085.1d6b9"]] + }, + { + "id": "559a8085.1d6b9", + "type": "link out", + "z": "baa1e3d9.cb29d", + "name": "Camera Name", + "links": ["30067f35.532f2", "572a6daa.6004c4"], + "x": 965, + "y": 780, + "wires": [] + }, + { + "id": "49ea1123.ee1768", + "type": "ui_numeric", + "z": "baa1e3d9.cb29d", + "name": "sleep_before", + "label": "Delay to stabilize image (s)", + "tooltip": "Happens before every capture", + "group": "4322c187.e73e5", + "order": 4, + "width": 5, + "height": 1, + "wrap": false, + "passthru": true, + "topic": "sleep_before", + "topicType": "str", + "format": "{{value}}", + "min": "0.1", + "max": "5", + "step": "0.1", + "className": "", + "x": 670, + "y": 140, + "wires": [["fb887036.12429"]] + }, + { + "id": "572a6daa.6004c4", + "type": "link in", + "z": "baa1e3d9.cb29d", + "name": "", + "links": ["559a8085.1d6b9"], + "x": 735, + "y": 60, + "wires": [["99b11fe4.2795d"]] + }, + { + "id": "8032ea50.1b57f", + "type": "ui_template", + "z": "baa1e3d9.cb29d", + "group": "b5d61bc7.54fe48", + "name": "progress header", + "order": 1, + "width": 0, + "height": 0, + "format": "

Capture progress

", + "storeOutMessages": false, + "fwdInMessages": false, + "resendOnRefresh": false, + "templateScope": "local", + "x": 1270, + "y": 820, + "wires": [[]] + }, + { + "id": "a4abb1ae.2ae418", + "type": "subflow:1c24ad9c.bebec2", + "z": "baa1e3d9.cb29d", + "name": "", + "env": [], + "x": 890, + "y": 480, + "wires": [[]] + }, + { + "id": "4be09c97f86897d9", + "type": "function", + "z": "baa1e3d9.cb29d", + "name": "get nb_frame", + "func": "msg.payload = msg.payload.nb_frame;\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 330, + "y": 220, + "wires": [["51b4d0df.d70a88"]] + }, + { + "id": "f573206abefa9518", + "type": "function", + "z": "baa1e3d9.cb29d", + "name": "get imaging_pump_volume", + "func": "msg.payload = msg.payload.imaging_pump_volume;\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 380, + "y": 260, + "wires": [["0df8d1d86af6455a"]] + }, + { + "id": "f948151ab4031df4", + "type": "function", + "z": "baa1e3d9.cb29d", + "name": "get sleep_before", + "func": "msg.payload = msg.payload.sleep_before;\nreturn msg;", + "outputs": 1, + "timeout": "", + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 340, + "y": 140, + "wires": [["49ea1123.ee1768"]] + }, + { + "id": "ad153212312f0347", + "type": "ui_ui_control", + "z": "baa1e3d9.cb29d", + "name": "onTab", + "events": "all", + "x": 310, + "y": 340, + "wires": [["9b69ea945b587192"]] + }, + { + "id": "9b69ea945b587192", + "type": "function", + "z": "baa1e3d9.cb29d", + "name": "check tab", + "func": "if (msg.name == \"Fluidic Acquisition\"){\n return { \"topic\": \"imager/ image\" }\n}", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 460, + "y": 340, + "wires": [["52ea7d01.711034"]], + "outputLabels": ["interface"] + }, + { + "id": "0df8d1d86af6455a", + "type": "ui_text_input", + "z": "baa1e3d9.cb29d", + "name": "imaging_pump_volume", + "label": "Pumped volume (mL)", + "tooltip": "between frames", + "group": "4322c187.e73e5", + "order": 3, + "width": 0, + "height": 0, + "passthru": true, + "mode": "number", + "delay": 300, + "topic": "imaging_pump_volume", + "sendOnBlur": true, + "className": "", + "topicType": "str", + "x": 630, + "y": 260, + "wires": [["fb887036.12429", "67091ac0.8f9f6c"]] + }, + { + "id": "37116281279b9b82", + "type": "ui_template", + "z": "baa1e3d9.cb29d", + "group": "4322c187.e73e5", + "name": "Start Acquisition", + "order": 12, + "width": "5", + "height": "1", + "format": "\n\n", + "storeOutMessages": false, + "fwdInMessages": false, + "resendOnRefresh": false, + "templateScope": "local", + "className": "", + "x": 420, + "y": 440, + "wires": [["c9f510c0.7d1328"]] + }, + { + "id": "9d6abe67.6bb3d", + "type": "ui_button", + "z": "cb95299c.2817c8", + "name": "", + "group": "64903b47.4034e4", + "order": 1, + "width": 0, + "height": 0, + "passthru": false, + "label": "Home", + "tooltip": "", + "color": "", + "bgcolor": "", + "icon": "home", + "payload": "{\"tab\":\"Home\"}", + "payloadType": "json", + "topic": "", + "x": 430, + "y": 600, + "wires": [["f0fb77cf.8f1c28"]] + }, + { + "id": "f0fb77cf.8f1c28", + "type": "ui_ui_control", + "z": "cb95299c.2817c8", + "name": "", + "events": "change", + "x": 740, + "y": 600, + "wires": [[]] + }, + { + "id": "8ec68b82.17e3d8", + "type": "ui_button", + "z": "cb95299c.2817c8", + "name": "Start segmentation", + "group": "abeb6dad.635a2", + "order": 10, + "width": 5, + "height": 1, + "passthru": false, + "label": "Start segmentation", + "tooltip": "", + "color": "", + "bgcolor": "", + "icon": "", + "payload": "{\"action\":\"segment\"}", + "payloadType": "json", + "topic": "segmenter/segment", + "x": 370, + "y": 460, + "wires": [["33c28dc1.238002", "c72a1064.1ec388"]] + }, + { + "id": "27be7971.b3fbce", + "type": "ui_button", + "z": "cb95299c.2817c8", + "d": true, + "name": "Stop segmentation", + "group": "abeb6dad.635a2", + "order": 12, + "width": 4, + "height": 1, + "passthru": true, + "label": "Stop segmentation", + "tooltip": "", + "color": "", + "bgcolor": "#AD1625", + "icon": "", + "payload": "{\"action\":\"stop\"}", + "payloadType": "json", + "topic": "segmenter/segment", + "x": 370, + "y": 520, + "wires": [["16f3cef4.0acac9"]] + }, + { + "id": "16f3cef4.0acac9", + "type": "mqtt out", + "z": "cb95299c.2817c8", + "name": "", + "topic": "", + "qos": "", + "retain": "", + "broker": "8dc3722c.06efa8", + "x": 850, + "y": 520, + "wires": [] + }, + { + "id": "8f3788f6.ddcf98", + "type": "function", + "z": "cb95299c.2817c8", + "name": "obj_counter", + "func": "obj_counter = flow.get('obj_counter')\nobj_counter = obj_counter + 1\nflow.set('obj_counter', obj_counter)\nmsg.payload = obj_counter\nmsg.topic = \"object count\"\nreturn msg", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "x": 810, + "y": 800, + "wires": [["fa3b7929.ac7da8", "9d53dbe2.dbffe8"]] + }, + { + "id": "aa38dbbc.cf0a9", + "type": "switch", + "z": "cb95299c.2817c8", + "name": "Segmenter", + "property": "topic", + "propertyType": "msg", + "rules": [ + { + "t": "eq", + "v": "status/segmenter", + "vt": "str" + }, + { + "t": "eq", + "v": "status/segmenter/name", + "vt": "str" + }, + { + "t": "eq", + "v": "status/segmenter/object_id", + "vt": "str" + }, + { + "t": "eq", + "v": "status/segmenter/metric", + "vt": "str" + } + ], + "checkall": "true", + "repair": false, + "outputs": 4, + "x": 490, + "y": 740, + "wires": [ + ["b9a23b91.93638", "6919465f.332e5"], + ["49af3d24.1799e4"], + ["8f3788f6.ddcf98"], + [] + ] + }, + { + "id": "9d53dbe2.dbffe8", + "type": "ui_chart", + "z": "cb95299c.2817c8", + "name": "counter graph", + "group": "46be9c86.dea684", + "order": 7, + "width": 10, + "height": 2, + "label": "", + "chartType": "horizontalBar", + "legend": "false", + "xformat": "HH:mm:ss", + "interpolate": "linear", + "nodata": "Objects count will be shown here once the segmentation is started", + "dot": false, + "ymin": "", + "ymax": "", + "removeOlder": 1, + "removeOlderPoints": "", + "removeOlderUnit": "3600", + "cutout": 0, + "useOneColor": true, + "useUTC": false, + "colors": [ + "#1f77b4", + "#aec7e8", + "#ff7f0e", + "#2ca02c", + "#98df8a", + "#d62728", + "#ff9896", + "#9467bd", + "#c5b0d5" + ], + "outputs": 1, + "x": 1340, + "y": 840, + "wires": [[]] + }, + { + "id": "a4f0f0d1.3aca88", + "type": "ui_toast", + "z": "cb95299c.2817c8", + "position": "top right", + "displayTime": "5", + "highlight": "", + "sendall": true, + "outputs": 0, + "ok": "OK", + "cancel": "", + "raw": false, + "topic": "", + "name": "", + "x": 1350, + "y": 680, + "wires": [] + }, + { + "id": "49af3d24.1799e4", + "type": "debug", + "z": "cb95299c.2817c8", + "name": "segmentation name", + "active": true, + "tosidebar": true, + "console": false, + "tostatus": false, + "complete": "true", + "targetType": "full", + "statusVal": "", + "statusType": "auto", + "x": 840, + "y": 760, + "wires": [] + }, + { + "id": "7088a5be.0c79a4", + "type": "template", + "z": "cb95299c.2817c8", + "name": "Create sentence", + "field": "payload", + "fieldType": "msg", + "format": "handlebars", + "syntax": "mustache", + "template": "The {{topic}} is {{payload.status}}", + "output": "str", + "x": 1100, + "y": 680, + "wires": [["a4f0f0d1.3aca88"]] + }, + { + "id": "b9a23b91.93638", + "type": "change", + "z": "cb95299c.2817c8", + "name": "Remove high-level topic", + "rules": [ + { + "t": "change", + "p": "topic", + "pt": "msg", + "from": "status/", + "fromt": "str", "to": "", - "reg": false, - "x": 500, - "y": 720, - "wires": [ - [ - "6af85f0e0fc21b11" - ] - ] - }, - { - "id": "438439b4ae62444c", - "type": "ui_template", - "z": "eaae323a.31b3", - "group": "0035a03e1490cd8c", - "name": "Information", - "order": 1, - "width": "0", - "height": "0", - "format": "
\n

\n To start using your PlanktoScope, please indicate the version of your PlanktoScope hardware:\n

\n
\n", - "storeOutMessages": true, - "fwdInMessages": true, - "resendOnRefresh": true, - "templateScope": "local", - "className": "", - "x": 710, - "y": 680, - "wires": [ - [] - ] - }, - { - "id": "a2f2a4c7cbae4446", - "type": "link in", - "z": "eaae323a.31b3", - "name": "Load hardware version", - "links": [ - "3973b999ee7b3b1d", - "56dd3f82c45717f0" - ], - "x": 185, - "y": 680, - "wires": [ - [ - "e954204b947a0c70" - ] - ] - }, - { - "id": "4557d689.a4fa88", - "type": "ui_text_input", - "z": "b771c342.49603", - "name": "sample_ship", - "label": "Name of the ship", - "tooltip": "", - "group": "3e1ba03d.f01d8", - "order": 2, - "width": 0, - "height": 0, - "passthru": true, - "mode": "text", - "delay": "300", - "topic": "sample_ship", - "sendOnBlur": true, - "className": "", - "topicType": "str", - "x": 670, - "y": 80, - "wires": [ - [ - "9f501f49.45645" - ] - ] - }, - { - "id": "fcfc31ae.af3af", - "type": "ui_dropdown", - "z": "b771c342.49603", - "name": "sample_sampling_gear", - "label": "Sampling gear*", - "tooltip": "", - "place": "Choose from list", - "group": "3e1ba03d.f01d8", - "order": 6, - "width": 0, - "height": 0, - "passthru": true, - "multiple": false, - "options": [ - { - "label": "High Speed Net", - "value": "net_hsn", - "type": "str" - }, - { - "label": "Tara Decknet", - "value": "net_decknet", - "type": "str" - }, - { - "label": "Plankton net", - "value": "net", - "type": "str" - }, - { - "label": "Niskin bottle 12L", - "value": "niskin_12L", - "type": "str" - }, - { - "label": "Niskin bottle 24L", - "value": "niskin_24L", - "type": "str" - }, - { - "label": "Pass Hull", - "value": "pass_hull", - "type": "str" - }, - { - "label": "Single location (with net or bucket)", - "value": "single_location", - "type": "str" - }, - { - "label": "Lab culture", - "value": "culture", - "type": "str" - }, - { - "label": "Test", - "value": "test", - "type": "str" - } - ], - "payload": "", - "topic": "sample_sampling_gear", - "topicType": "str", - "className": "", - "x": 630, - "y": 200, - "wires": [ - [ - "9f501f49.45645", - "46eb1bf8.3dc5f4", - "3ac7b631f5d8ef90" - ] - ] - }, - { - "id": "82c5fc77.59c97", - "type": "ui_text_input", - "z": "b771c342.49603", - "name": "sample_operator", - "label": "Name of the operator*", - "tooltip": "", - "group": "3e1ba03d.f01d8", - "order": 3, - "width": 0, - "height": 0, - "passthru": true, - "mode": "text", - "delay": "300", - "topic": "sample_operator", - "sendOnBlur": true, - "className": "", - "topicType": "str", - "x": 650, - "y": 160, - "wires": [ - [ - "9f501f49.45645" - ] - ] - }, - { - "id": "9c882b37.fde668", - "type": "ui_text_input", - "z": "b771c342.49603", - "name": "sample_project", - "label": "Name of the project*", - "tooltip": "", - "group": "3e1ba03d.f01d8", - "order": 1, - "width": 0, - "height": 0, - "passthru": true, - "mode": "text", - "delay": "300", - "topic": "sample_project", - "sendOnBlur": true, - "className": "", - "topicType": "str", - "x": 660, - "y": 40, - "wires": [ - [ - "9f501f49.45645" - ] - ] - }, - { - "id": "94eb4221.9b92c", - "type": "ui_text_input", - "z": "b771c342.49603", - "name": "sample_id", - "label": "Station ID*", - "tooltip": "", - "group": "3e1ba03d.f01d8", - "order": 4, - "width": 0, - "height": 0, - "passthru": true, - "mode": "text", - "delay": "300", - "topic": "sample_id", - "sendOnBlur": true, - "className": "", - "topicType": "str", - "x": 670, - "y": 120, - "wires": [ - [ - "9f501f49.45645" - ] - ] - }, - { - "id": "9f501f49.45645", - "type": "function", - "z": "b771c342.49603", - "name": "set global", - "func": "global.set(msg.topic,msg.payload);", - "outputs": 1, - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 1080, - "y": 200, - "wires": [ - [] - ] - }, - { - "id": "222c851d.5d0a3a", - "type": "ui_ui_control", - "z": "b771c342.49603", - "name": "", - "events": "change", - "x": 400, - "y": 880, - "wires": [ - [] - ] - }, - { - "id": "52f6b103.1efb6", - "type": "ui_toast", - "z": "b771c342.49603", - "position": "dialog", - "displayTime": "3", - "highlight": "", - "sendall": true, - "outputs": 1, - "ok": "OK", - "cancel": "", - "raw": false, - "topic": "", - "name": "", - "x": 710, - "y": 980, - "wires": [ - [] - ] - }, - { - "id": "986d960a.c75908", - "type": "function", - "z": "b771c342.49603", - "name": "Check form", - "func": "var sample_project= global.get(\"sample_project\");\nvar sample_id= global.get(\"sample_id\");\nvar sample_operator= global.get(\"sample_operator\");\nvar sample_sampling_gear= global.get(\"sample_sampling_gear\");\nvar object_lat= global.get(\"object_lat\");\nvar object_lon= global.get(\"object_lon\");\nvar object_date= global.get(\"object_date\");\nvar object_time= global.get(\"object_time\");\nif (sample_project === undefined || sample_project === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Sample project\"\n return [null, msg];\n}\n\nelse if (sample_id === undefined || sample_id === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Sample ID\"\n return [null, msg];\n}\n\nelse if (sample_operator === undefined || sample_operator === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Sample operator\"\n return [null, msg];\n}\n\nelse if (sample_sampling_gear === undefined || sample_sampling_gear === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Sample sampling gear\"\n return [null, msg];\n}\n\nelse if (object_lat === undefined || object_lat === null) {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Latitude of sample\"\n return [null, msg];\n}\n\nelse if (object_lon === undefined || object_lon === null) {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Longitude of sample\"\n return [null, msg];\n}\n\nelse if (object_date === undefined || object_date === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Date of sample\"\n return [null, msg];\n}\n\nelse if (object_time === undefined || object_time === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Time of sample\"\n return [null, msg];\n}\nelse if (sample_sampling_gear.startsWith(\"net\")){\n var object_lat_end = global.get(\"object_lat_end\");\n var object_lon_end = global.get(\"object_lon_end\");\n var object_date_end = global.get(\"object_date_end\");\n var object_time_end = global.get(\"object_time_end\");\n var sample_gear_net_opening = global.get(\"sample_gear_net_opening\");\n\n if (object_lat_end === undefined || object_lat_end === null) {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Latitude of retrieval\"\n return [null, msg];\n }\n \n else if (object_lon_end === undefined || object_lon_end === null) {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Longitude of retrieval\"\n return [null, msg];\n }\n \n else if (object_date_end === undefined || object_date_end === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Date of retrieval\"\n return [null, msg];\n }\n \n else if (object_time_end === undefined || object_time_end === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Time of retrieval\"\n return [null, msg];\n }\n \n else if (sample_gear_net_opening === undefined || sample_gear_net_opening === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Net opening dimension\"\n return [null, msg];\n }\n \n if (sample_sampling_gear == \"net_decknet\"){\n var sample_total_volume = global.get(\"sample_total_volume\");\n if (sample_total_volume === undefined || sample_total_volume === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Decknet flowmeter readings\"\n return [null, msg];\n }\n }\n}\nmsg.topic = \"config_save\"\nmsg.payload={\"tab\":\"Optic Configuration\"};\n\nreturn [msg, null];", - "outputs": 2, - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 470, - "y": 940, - "wires": [ - [ - "726a7822.cd6298", - "e2b277c1.07283" - ], - [ - "52f6b103.1efb6" - ] - ], - "outputLabels": [ - "message", - "error" - ] - }, - { - "id": "726a7822.cd6298", - "type": "ui_ui_control", - "z": "b771c342.49603", - "name": "", - "events": "change", - "x": 700, - "y": 900, - "wires": [ - [] - ] - }, - { - "id": "16de754c.cc969b", - "type": "ui_button", - "z": "b771c342.49603", - "name": "", - "group": "5517c651.b2f668", - "order": 1, - "width": 5, - "height": 1, - "passthru": false, - "label": "Previous", - "tooltip": "", - "color": "#097479", - "bgcolor": "white", - "icon": "keyboard_return", - "payload": "{\"tab\":\"Home\"}", - "payloadType": "json", - "topic": "", - "x": 240, - "y": 880, - "wires": [ - [ - "222c851d.5d0a3a" - ] - ] - }, - { - "id": "84f3d040.5f7ea", - "type": "ui_button", - "z": "b771c342.49603", - "name": "", - "group": "5517c651.b2f668", - "order": 2, - "width": 5, - "height": 1, - "passthru": false, - "label": "Continue", - "tooltip": "", - "color": "#097479", - "bgcolor": "white", - "icon": "keyboard_tab", - "payload": "{\"tab\":\"Home\"}", - "payloadType": "json", - "topic": "", - "x": 240, - "y": 940, - "wires": [ - [ - "986d960a.c75908" - ] - ] - }, - { - "id": "d027a6bf.7049e8", - "type": "function", - "z": "b771c342.49603", - "name": "get sample_projet", - "func": "msg.payload = msg.payload.sample_project;\nreturn msg;", - "outputs": 1, - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 310, - "y": 40, - "wires": [ - [ - "9c882b37.fde668" - ] - ] - }, - { - "id": "5a811caf.0f3144", - "type": "function", - "z": "b771c342.49603", - "name": "get sample_ship", - "func": "msg.payload = msg.payload.sample_ship;\nreturn msg;", - "outputs": 1, - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 300, - "y": 80, - "wires": [ - [ - "4557d689.a4fa88" - ] - ] - }, - { - "id": "45911c98.2bd83c", - "type": "function", - "z": "b771c342.49603", - "name": "get sample_id", - "func": "msg.payload = msg.payload.sample_id;\nreturn msg;", - "outputs": 1, - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 300, - "y": 120, - "wires": [ - [ - "94eb4221.9b92c" - ] - ] - }, - { - "id": "1e09a4ab.72996b", - "type": "function", - "z": "b771c342.49603", - "name": "get sample_operator", - "func": "msg.payload = msg.payload.sample_operator;\nreturn msg;", - "outputs": 1, - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 320, - "y": 160, - "wires": [ - [ - "82c5fc77.59c97" - ] - ] - }, - { - "id": "a3272681.f271c8", - "type": "function", - "z": "b771c342.49603", - "name": "get sample_sampling_gear", - "func": "msg.topic = \"sample_sampling_gear\"\nif (msg.payload.sample_sampling_gear === undefined){\n msg.payload = \"net\";\n}\nelse\n{\n msg.payload = msg.payload.sample_sampling_gear;\n}\nreturn msg;", - "outputs": 1, - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 340, - "y": 200, - "wires": [ - [ - "fcfc31ae.af3af" - ] - ] - }, - { - "id": "a6907a38.f6611", - "type": "subflow:1c24ad9c.bebec2", - "z": "b771c342.49603", - "name": "", - "env": [], - "x": 70, - "y": 220, - "wires": [ - [ - "d027a6bf.7049e8", - "5a811caf.0f3144", - "45911c98.2bd83c", - "1e09a4ab.72996b", - "8dff1648.82e42", - "9f04c5ec.75f3d8", - "f408a273.4fb538", - "e73fd87d.d24e4", - "489c8e06.cc7d6", - "a3272681.f271c8" - ] - ] - }, - { - "id": "e2b277c1.07283", - "type": "subflow:1c24ad9c.bebec2", - "z": "b771c342.49603", - "name": "", - "env": [], - "x": 690, - "y": 940, - "wires": [ - [] - ] - }, - { - "id": "9c7f7fc9.c8d3a", - "type": "ui_text_input", - "z": "b771c342.49603", - "name": "object_depth_max", - "label": "Max sampling depth (m)", - "tooltip": "in m", - "group": "3e1ba03d.f01d8", - "order": 10, - "width": 5, - "height": 1, - "passthru": true, - "mode": "number", - "delay": "300", - "topic": "object_depth_max", - "sendOnBlur": true, - "className": "", - "topicType": "str", - "x": 650, - "y": 240, - "wires": [ - [ - "9f501f49.45645" - ] - ] - }, - { - "id": "317eeeb7.8d3042", - "type": "ui_text_input", - "z": "b771c342.49603", - "name": "object_depth_min", - "label": "Min sampling depth (m)", - "tooltip": "in m", - "group": "3e1ba03d.f01d8", - "order": 9, - "width": 5, - "height": 1, - "passthru": true, - "mode": "number", - "delay": "300", - "topic": "object_depth_min", - "sendOnBlur": true, - "className": "", - "topicType": "str", - "x": 650, - "y": 280, - "wires": [ - [ - "9f501f49.45645" - ] - ] - }, - { - "id": "cbb123ab.fd3428", - "type": "ui_ui_control", - "z": "b771c342.49603", - "name": "show/hide net groups", - "events": "change", - "x": 1320, - "y": 300, - "wires": [ - [] - ] - }, - { - "id": "642ff403.1ed91c", - "type": "ui_text_input", - "z": "b771c342.49603", - "name": "sample_concentrated_sample_volume", - "label": "Concentrated sample volume (mL)", - "tooltip": "Volume extracted from the net codend (in mL)", - "group": "3e1ba03d.f01d8", - "order": 12, - "width": 10, - "height": 1, - "passthru": true, - "mode": "number", - "delay": "300", - "topic": "sample_concentrated_sample_volume", - "sendOnBlur": true, - "className": "", - "topicType": "str", - "x": 590, - "y": 440, - "wires": [ - [ - "9f501f49.45645" - ] - ] - }, - { - "id": "e967b844.46aa48", - "type": "ui_text_input", - "z": "b771c342.49603", - "name": "sample_gear_net_opening", - "label": "Net opening dimension (mm)", - "tooltip": "Size of the net mouth opening (in mm)", - "group": "cf5d9f0e.d57e7", - "order": 1, - "width": 10, - "height": 1, - "passthru": true, - "mode": "number", - "delay": "300", - "topic": "sample_gear_net_opening", - "sendOnBlur": true, - "className": "", - "topicType": "str", - "x": 620, - "y": 320, - "wires": [ - [ - "9f501f49.45645" - ] - ] - }, - { - "id": "c0ce5626.b6c5", - "type": "ui_toast", - "z": "b771c342.49603", - "position": "dialog", - "displayTime": "3", - "highlight": "", - "sendall": true, - "outputs": 1, - "ok": "OK", - "cancel": "", - "raw": false, - "topic": "", - "name": "", - "x": 1230, - "y": 620, - "wires": [ - [] - ] - }, - { - "id": "c33f1124.af6688", - "type": "ui_form", - "z": "b771c342.49603", - "name": "sample_location", - "label": "Sample Location", - "group": "cef1e703.bcf3c8", - "order": 1, - "width": 0, - "height": 0, - "options": [ - { - "label": "Latitude (36.574439°N or 36°57.4439'N)", - "value": "object_lat", - "type": "text", - "required": true, - "rows": null - }, - { - "label": "Longitude (110.42100°W or 110°4.2100'W)", - "value": "object_lon", - "type": "text", - "required": true, - "rows": null - }, - { - "label": "Date (YYYY-MM-DD, UTC)", - "value": "object_date", - "type": "text", - "required": true, - "rows": null - }, - { - "label": "Time (HH:MM(:SS), UTC 24h)", - "value": "object_time", - "type": "text", - "required": true, - "rows": null - } - ], - "formValue": { - "object_lat": "", - "object_lon": "", - "object_date": "", - "object_time": "" - }, - "payload": "", - "submit": "Validate", - "cancel": "Reset", - "topic": "sample_location", - "x": 660, - "y": 580, - "wires": [ - [ - "14658615.47c862", - "a9fb1f4b83fc25a7" - ] - ] - }, - { - "id": "358908cd.416ab", - "type": "ui_form", - "z": "b771c342.49603", - "name": "net_throw_location", - "label": "Net Throw Location", - "group": "cf5d9f0e.d57e7", - "order": 3, - "width": 0, - "height": 0, - "options": [ - { - "label": "Latitude (36.574439°N or 36°57.4439'N)", - "value": "object_lat", - "type": "text", - "required": true, - "rows": null - }, - { - "label": "Longitude (110.42100°W or 110°4.2100'W)", - "value": "object_lon", - "type": "text", - "required": true, - "rows": null - }, - { - "label": "Date (YYYY-MM-DD UTC)", - "value": "object_date", - "type": "text", - "required": true, - "rows": null - }, - { - "label": "Time (HH:MM, UTC 24h)", - "value": "object_time", - "type": "text", - "required": true, - "rows": null - } - ], - "formValue": { - "object_lat": "", - "object_lon": "", - "object_date": "", - "object_time": "" - }, - "payload": "", - "submit": "Validate", - "cancel": "", - "topic": "net_throw_location", - "topicType": "str", - "splitLayout": false, - "className": "", - "x": 650, - "y": 620, - "wires": [ - [ - "14658615.47c862", - "ad54b89540460d27" - ] - ] - }, - { - "id": "56d40584.eff4e4", - "type": "ui_form", - "z": "b771c342.49603", - "name": "net_retrieval_location", - "label": "Net Retrieval Location", - "group": "cf5d9f0e.d57e7", - "order": 4, - "width": 0, - "height": 0, - "options": [ - { - "label": "Latitude (36.574439°N or 36°57.4439'N)", - "value": "object_lat_end", - "type": "text", - "required": true, - "rows": null - }, - { - "label": "Longitude (110.42100°W or 110°4.2100'W)", - "value": "object_lon_end", - "type": "text", - "required": true, - "rows": null - }, - { - "label": "Date (YYYY-MM-DD UTC)", - "value": "object_date_end", - "type": "text", - "required": true, - "rows": null - }, - { - "label": "Time (HH:MM, UTC 24h)", - "value": "object_time_end", - "type": "text", - "required": true, - "rows": null - } - ], - "formValue": { - "object_lat_end": "", - "object_lon_end": "", - "object_date_end": "", - "object_time_end": "" - }, - "payload": "", - "submit": "Validate", - "cancel": "", - "topic": "net_retrieval_location", - "topicType": "str", - "splitLayout": false, - "x": 640, - "y": 660, - "wires": [ - [ - "14658615.47c862", - "c21bf0244e67e40a" - ] - ] - }, - { - "id": "14658615.47c862", - "type": "function", - "z": "b771c342.49603", - "name": "Validate Location / Timestamp", - "func": "// Code added here will be run once\n// whenever the node is started.\nfunction ConvertDDMMToDD(input) {\n // Input Format 36°57.4439'N, 110°4.2100'W\n // From https://stackoverflow.com/questions/1140189/converting-latitude-and-longitude-to-decimal-values\n if (!input.match(/\\d+°\\d+\\.*\\d*\\'[NSEW]/)){\n \treturn \"parsing error\"\n }\n var parts = input.split(/[^\\d.\\w]+/)\n if (parts.length != 3){\n \treturn \"parsing error\"\n }\n var dd = Number(parts[0]) + Number(parts[1])/60\n return dd.toFixed(6) + parts[2]\n}\n\nfunction ValidateCoordinates(input, lat){\n // Input Format 36.574439°N, 110.42100°W\n // Or 36°57.4439'N, 110°4.2100'W\n if (input.match(\"'\")){\n input = ConvertDDMMToDD(input)\n }\n \n var error = {}\n\n if (input.startsWith(\"parsing error\")){\n error.topic = \"Error with the \"\n error.payload = \"You need to respect the format example, 36.574439°N or 36°57.4439'N\"\n return [null, error]\n }\n \n var direction = input.match(/[NSEW]/)\n var position = input.match(/[\\+\\-\\d\\.]+/)\n \n if (direction === null){\n error.topic = \"Error with the \"\n error.payload = \"You need to explicitely enter N/S/E/W\"\n return [null, error]\n }\n \n // Test that position is only made of digits!\n if(/^[\\+\\-]/.test(position)){\n error.topic = \"Error with the \"\n error.payload = \"Use of +/- sign is inconsistent with N/S/E/W letter! Please only use N/S/E/W!\"\n return [null, error]\n }\n \n var dd = Number(position)\n if (lat){\n // Check latitude\n if (direction == \"S\" || direction == \"N\") {\n if (dd>90.0){\n error.topic = \"Error with the \"\n error.payload = \"Latitude is more than 90°\"\n return [null, error]\n }\n }\n if (direction == \"W\" || direction == \"E\") {\n error.topic = \"Error with the \"\n error.payload = \"This is not a Latitude!\"\n return [null, error]\n }\n }\n else{\n // Check longitude\n if (direction == \"W\" || direction == \"E\") {\n if (dd>180.0){\n error.topic = \"Error with the \"\n error.payload = \"Longitude is more than 180°\"\n return [null, error]\n }\n }\n if (direction == \"N\" || direction == \"S\") {\n error.topic = \"Error with the \"\n error.payload = \"This is not a Longitude!\"\n return [null, error]\n }\n }\n \n if (direction == \"S\" || direction == \"W\") {\n dd = dd * -1\n } // Don't do anything for N or E\n return [dd.toFixed(4), null]\n \n}\n\nfunction ValidateDate(input){\n // Input Format 2020-12-25\n var error = {};\n \n if (! /20\\d{2}-[0-1]\\d-[0-3]\\d/.test(input)){\n error.topic = \"Error with the date\";\n error.payload = \"The date should respect the ISO format YYYY-MM-DD\";\n return [null, error];\n }\n else {\n var date = input.match(/\\d+/g);\n if (!((2000 < date[0]) && (date[0] < 2100))){\n error.topic = \"Error with the date\"\n error.payload = \"The year should be between 2000 and 2100\"\n return [null, error]\n }\n else if (!((0 < date[1]) && (date[1] <= 12))){\n error.topic = \"Error with the date\"\n error.payload = \"The month should be between 01 and 12\"\n return [null, error]\n }\n else if (!((0 < date[2]) && (date[2] <= 31))){\n error.topic = \"Error with the date\"\n error.payload = \"The day should be between 01 and 31\"\n return [null, error]\n }\n }\n return [input.replace(/-/g, ''), null]\n}\n\nfunction ValidateTime(input){\n // Input Format 12:00\n var error = {}\n \n if (! /[0-2]?\\d:[0-5]\\d/.test(input)){\n error.topic = \"Error with the time\"\n error.payload = \"The date should respect the ISO format HH:MM\"\n return [null, error]\n }\n else {\n var time = input.match(/\\d+/g)\n \n if (!((0 <= time[0]) && (time[0] < 24))){\n error.topic = \"Error with the time\"\n error.payload = \"The hours should be 0 and 23.\"\n return [null, error]\n }\n else if (!((0 <= time[1]) && (time[1] < 60))){\n error.topic = \"Error with the time\"\n error.payload = \"The minutes should be between 0 and 59\"\n return [null, error]\n }\n }\n return [input.replace(/:/g, ''), null]\n}\n\n\nvar ret\nvar payload_for_form = {payload:{}}\nmsg.valid = false\n\nif (msg.topic == \"culture_timestamp\"){\n ret = ValidateDate(msg.payload.object_date)\n if (ret[1] !== null){\n msg.topic = ret[1].topic + \" of the sample\"\n msg.payload = ret[1].payload\n return [msg, null]\n }\n global.set(\"object_date\", ret[0])\n \n ret = ValidateTime(msg.payload.object_time)\n if (ret[1] !== null){\n msg.topic = ret[1].topic + \" of the sample\"\n msg.payload = ret[1].payload\n return [msg, null]\n }\n global.set(\"object_time\", ret[0])\n return [{topic: \"Date and time format valid!\", payload: \"All good!\", valid: true}, payload_for_form]\n}\nelse if (msg.topic == \"net_retrieval_location\"){\n ret = ValidateCoordinates(msg.payload.object_lat_end, true);\n if (ret[1] !== null){\n msg.topic = ret[1].topic + \" Latitude\"\n msg.payload = ret[1].payload\n return [msg, null]\n }\n global.set(\"object_lat_end\", ret[0])\n ret = ValidateCoordinates(msg.payload.object_lon_end, false)\n if (ret[1] !== null){\n msg.topic = ret[1].topic + \" Longitude\"\n msg.payload = ret[1].payload\n return [msg, null]\n }\n global.set(\"object_lon_end\", ret[0]);\n \n ret = ValidateDate(msg.payload.object_date_end)\n if (ret[1] !== null){\n msg.topic = ret[1].topic + \" of the sample retrieval\"\n msg.payload = ret[1].payload\n return [msg, null]\n }\n global.set(\"object_date_end\", ret[0])\n \n ret = ValidateTime(msg.payload.object_time_end)\n if (ret[1] !== null){\n msg.topic = ret[1].topic + \" of the sample retrieval\"\n msg.payload = ret[1].payload\n return [msg, null]\n }\n global.set(\"object_time_end\", ret[0])\n}\nelse{\n ret = ValidateCoordinates(msg.payload.object_lat, true);\n if (ret[1] !== null){\n msg.topic = ret[1].topic + \" Latitude\";\n msg.payload = ret[1].payload\n return [msg, null]\n }\n global.set(\"object_lat\", ret[0]);\n payload_for_form.payload[\"object_lat_end\"] = msg.payload.object_lat;\n \n ret = ValidateCoordinates(msg.payload.object_lon, false);\n if (ret[1] !== null){\n msg.topic = ret[1].topic + \" Longitude\"\n msg.payload = ret[1].payload\n return [msg, null]\n }\n global.set(\"object_lon\", ret[0])\n payload_for_form.payload[\"object_lon_end\"] = msg.payload.object_lon;\n\n ret = ValidateDate(msg.payload.object_date)\n if (ret[1] !== null){\n msg.topic = ret[1].topic + \" of the sample\"\n msg.payload = ret[1].payload\n return [msg, null]\n }\n global.set(\"object_date\", ret[0])\n payload_for_form.payload[\"object_date_end\"] = msg.payload.object_date;\n \n ret = ValidateTime(msg.payload.object_time)\n if (ret[1] !== null){\n msg.topic = ret[1].topic + \" of the sample\"\n msg.payload = ret[1].payload\n return [msg, null]\n }\n global.set(\"object_time\", ret[0])\n payload_for_form.payload[\"object_time_end\"] = msg.payload.object_time;\n}\nreturn [{topic: \"Coordinates valid!\", payload: \"All good!\", valid: true}, payload_for_form]\n", - "outputs": 2, - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 930, - "y": 620, - "wires": [ - [ - "c0ce5626.b6c5", - "9a18a4b4.178448" - ], - [ - "56d40584.eff4e4" - ] - ], - "inputLabels": [ - "Location form data" - ], - "outputLabels": [ - "Message", - "Location validated" - ] - }, - { - "id": "46eb1bf8.3dc5f4", - "type": "function", - "z": "b771c342.49603", - "name": "Net check", - "func": "var decknet = {}\nvar activation_msg = {}\n\nif (msg.payload.startsWith(\"net_decknet\")){\n decknet.enabled = true;\n}\nelse {\n decknet.enabled = false;\n}\n\nif (msg.payload.startsWith(\"net\")){\n activation_msg.payload = {\"group\":{\"show\":[\"Sample_Net_Metadata\"],\"hide\":[\"Sample_Sample_Location\",\"Sample_Culture_Date_and_Time\"]}};\n}\nelse if (msg.payload != \"culture\" && msg.payload != \"test\"){\n activation_msg.payload = {\"group\":{\"show\":[\"Sample_Sample_Location\"], \"hide\":[\"Sample_Net_Metadata\",\"Sample_Culture_Date_and_Time\"]}};\n}\n\n\nreturn [decknet, activation_msg];", - "outputs": 2, - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 1080, - "y": 240, - "wires": [ - [ - "516375fd.2ed61c", - "470e382a.25691", - "fbe32ac8.ff6a38" - ], - [ - "cbb123ab.fd3428" - ] - ], - "outputLabels": [ - "decknet activation", - "group display control" - ] - }, - { - "id": "516375fd.2ed61c", - "type": "ui_text_input", - "z": "b771c342.49603", - "name": "sample_total_flowmeter_start", - "label": "Decknet flowmeter start", - "tooltip": "in L", - "group": "cf5d9f0e.d57e7", - "order": 6, - "width": 5, - "height": 1, - "passthru": false, - "mode": "text", - "delay": "300", - "topic": "sample_total_flowmeter_start", - "sendOnBlur": true, - "className": "", - "topicType": "str", - "x": 1340, - "y": 220, - "wires": [ - [ - "e9bc112c.eb75f8" - ] - ] - }, - { - "id": "470e382a.25691", - "type": "ui_text_input", - "z": "b771c342.49603", - "name": "sample_total_flowmeter_end", - "label": "Decknet flowmeter end", - "tooltip": "in L", - "group": "cf5d9f0e.d57e7", - "order": 7, - "width": 5, - "height": 1, - "passthru": false, - "mode": "text", - "delay": "300", - "topic": "sample_total_flowmeter_end", - "sendOnBlur": true, - "className": "", - "topicType": "str", - "x": 1340, - "y": 260, - "wires": [ - [ - "e9bc112c.eb75f8" - ] - ] - }, - { - "id": "fbe32ac8.ff6a38", - "type": "ui_template", - "z": "b771c342.49603", - "group": "cf5d9f0e.d57e7", - "name": "Decknet flowmeter read", - "order": 5, - "width": 10, - "height": 1, - "format": "
\n

Decknet flowmeter readings

\n

Those values are used to calculate sample_total_volume. Values are in L.

\n
\n", - "storeOutMessages": true, - "fwdInMessages": true, - "resendOnRefresh": true, - "templateScope": "local", - "x": 1330, - "y": 180, - "wires": [ - [] - ] - }, - { - "id": "f408a273.4fb538", - "type": "function", - "z": "b771c342.49603", - "name": "get sample_gear_net_opening", - "func": "if (msg.payload.sample_gear_net_opening === null){\n msg.payload = 0;\n global.set(\"sample_gear_net_opening\",msg.payload);\n}\nelse\n{\n msg.payload = msg.payload.sample_gear_net_opening;\n}\nreturn msg;", - "outputs": 1, - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 350, - "y": 320, - "wires": [ - [ - "e967b844.46aa48" - ] - ] - }, - { - "id": "8dff1648.82e42", - "type": "function", - "z": "b771c342.49603", - "name": "get object_depth_max", - "func": "if (msg.payload.object_depth_max === null){\n msg.payload = 0;\n global.set(\"object_depth_max\",msg.payload);\n}\nelse\n{\n msg.payload = msg.payload.object_depth_max;\n}\nreturn msg;", - "outputs": 1, - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 320, - "y": 240, - "wires": [ - [ - "9c7f7fc9.c8d3a" - ] - ] - }, - { - "id": "9f04c5ec.75f3d8", - "type": "function", - "z": "b771c342.49603", - "name": "get object_depth_min", - "func": "if (msg.payload.object_depth_min === null){\n msg.payload = 0;\n global.set(\"object_depth_min\",msg.payload);\n}\nelse\n{\n msg.payload = msg.payload.object_depth_min;\n}\nreturn msg;", - "outputs": 1, - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 320, - "y": 280, - "wires": [ - [ - "317eeeb7.8d3042" - ] - ] - }, - { - "id": "9a18a4b4.178448", - "type": "function", - "z": "b771c342.49603", - "name": "calculate sample_total_volume", - "func": "\n/*object_lat = 33.95 \nobject_lon = 118.4 \nobject_lat_end = 40.6333 \nobject_lon_end = 73.78333\nsample_gear_net_opening = 40*/\n\n// Copyright 1997 Ed Williams. All rights reserved\n// Adapted by Romain Bazile - Ocean Trotter - 01-2021\n\ndecpl=4 // Dec places of minutes output\n\nellipse = {\"name\":\"WSG84\", \"a\":6378.137/1.852, \"invf\":298.257223563}\n\nfunction ComputeDistance(lat1, lon1, lat2, lon2){\n var d,crs12,crs21\n var argacos\n var a,invf\n \n // lat and lon in radian\n lat1=(Math.PI/180)*lat1\n lat2=(Math.PI/180)*lat2\n lon1=(Math.PI/180)*lon1\n lon2=(Math.PI/180)*lon2\n \n //alert(\"lat1=\" + lat1 + \"lon1=\" + lon1 +\"\\nlat2=\" +lat2+ \"lon2=\"+lon2)\n \n /* get distance conversion factor */\n dc=1.852 //km\n //alert(\"dc=\" +dc)\n \n //showProps(ellipse,\"ellipse\")\n \n // elliptic code\n d=crsdist_ell(lat1,-lon1,lat2,-lon2,ellipse) // ellipse uses East negative\n d=d*dc // go to physical units\n \n //alert(\"d=\"+d+\" crs12=\"+crs12+\" crs21=\"+crs21)\n return d\n}\n\nfunction crsdist(lat1,lon1,lat2,lon2){ // radian args\n /* compute course and distance (spherical) */\n if ((lat1+lat2===0) && (Math.abs(lon1-lon2)==Math.PI) && \n (Math.abs(lat1) != (Math.PI/180)*90)){\t\n \talert(\"Course between antipodal points is undefined\")\n }\n \n d = Math.acos(Math.sin(lat1)*Math.sin(lat2)+Math.cos(lat1)*Math.cos(lat2)*Math.cos(lon1-lon2))\n return d\n}\n\nfunction crsdist_ell(glat1,glon1,glat2,glon2,ellipse){\n // glat1 initial geodetic latitude in radians N positive \n // glon1 initial geodetic longitude in radians E positive \n // glat2 final geodetic latitude in radians N positive \n // glon2 final geodetic longitude in radians E positive \n a=ellipse.a\n f=1/ellipse.invf\n //alert(\"a=\"+a+\" f=\"+f)\n var r, tu1, tu2, cu1, su1, cu2, s1, b1, f1\n var x, sx, cx, sy, cy,y, sa, c2a, cz, e, c, d\n var EPS= 0.00000000005\n var faz, baz, s\n var iter=1\n var MAXITER=100\n if ((glat1+glat2===0) && (Math.abs(glon1-glon2)==Math.PI)){\n alert(\"Course and distance between antipodal points is undefined\")\n glat1=glat1+0.00001 // allow algorithm to complete\n }\n if (glat1==glat2 && (glon1==glon2 || Math.abs(Math.abs(glon1-glon2)-2*Math.PI) < EPS)){\n alert(\"Points 1 and 2 are identical- course undefined\")\n out=new MakeArray(0)\n out.d=0\n out.crs12=0\n out.crs21=Math.PI\n return out\n }\n r = 1 - f\n tu1 = r * Math.tan (glat1)\n tu2 = r * Math.tan (glat2)\n cu1 = 1 / Math.sqrt (1 + tu1 * tu1)\n su1 = cu1 * tu1\n cu2 = 1 / Math.sqrt (1 + tu2 * tu2)\n s1 = cu1 * cu2\n b1 = s1 * tu2\n f1 = b1 * tu1\n x = glon2 - glon1\n d = x + 1 // force one pass\n while ((Math.abs(d - x) > EPS) && (iter < MAXITER))\n {\n iter=iter+1\n sx = Math.sin (x)\n // alert(\"sx=\"+sx)\n cx = Math.cos (x)\n tu1 = cu2 * sx\n tu2 = b1 - su1 * cu2 * cx\n sy = Math.sqrt(tu1 * tu1 + tu2 * tu2)\n cy = s1 * cx + f1\n y = atan2 (sy, cy)\n sa = s1 * sx / sy\n c2a = 1 - sa * sa\n cz = f1 + f1\n if (c2a > 0)\n cz = cy - cz / c2a\n e = cz * cz * 2 - 1\n c = ((-3 * c2a + 4) * f + 4) * c2a * f / 16\n d = x\n x = ((e * cy * c + cz) * sy * c + y) * sa\n x = (1 - c) * x * f + glon2 - glon1\n }\n x = Math.sqrt ((1 / (r * r) - 1) * c2a + 1)\n x +=1\n x = (x - 2) / x\n c = 1 - x\n c = (x * x / 4 + 1) / c\n d = (0.375 * x * x - 1) * x\n x = e * cy\n d = ((((sy*sy*4-3)*(1-e-e)*cz*d/6-x)*d/4+cz)*sy*d+y)*c*a*r\n if (Math.abs(iter-MAXITER)0) && (y>=0)){ out= Math.atan(y/x)}\n if ((x >0) && (y<0)) { out= Math.atan(y/x)+2*Math.PI}\n if ((x===0) && (y>0)) { out= Math.PI/2}\n if ((x===0) && (y<0)) { out= 3*Math.PI/2} \n if ((x===0) && (y===0)) {\n alert(\"atan2(0,0) undefined\")\n out= 0\n } \n return out\n}\n\nfunction showProps(obj,objName){\n var result=\"\"\n for (var i in obj){\n result +=objName + \".\" + i + \" = \" + obj[i] + \"\\n\"\n }\n alert(result)\n}\n\n\nif (msg.valid){\n msg.topic=\"sample_total_volume\"\n \n var object_lat_end = global.get(\"object_lat_end\")\n var object_lon_end = global.get(\"object_lon_end\")\n var sample_sampling_gear = global.get(\"sample_sampling_gear\")\n \n if (sample_sampling_gear.startsWith(\"net\") && sample_sampling_gear != \"net_decknet\") {\n if (!(isNaN(object_lat_end) && isNaN(object_lon_end))){\n var object_lat = global.get(\"object_lat\")\n var object_lon = global.get(\"object_lon\")\n var sample_gear_net_opening = global.get(\"sample_gear_net_opening\");\n\n distance_km = ComputeDistance(object_lat, object_lon, object_lat_end, object_lon_end)\n\n sample_total_volume = distance_km*(Math.PI*(sample_gear_net_opening/2)*(sample_gear_net_opening/2)) // liters\n sample_total_volume = Math.round(sample_total_volume + Number.EPSILON)\n msg.payload = sample_total_volume\n return msg\n }\n }\n}", - "outputs": 1, - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 930, - "y": 760, - "wires": [ - [ - "4f6afc5a.81e454" - ] - ] - }, - { - "id": "e73fd87d.d24e4", - "type": "function", - "z": "b771c342.49603", - "name": "get acq_minimum_mesh", - "func": "msg.payload = msg.payload.acq_minimum_mesh;\nreturn msg;", - "outputs": 1, - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 330, - "y": 360, - "wires": [ - [ - "1aad56b31b5647ce" - ] - ] - }, - { - "id": "489c8e06.cc7d6", - "type": "function", - "z": "b771c342.49603", - "name": "get acq_maximum_mesh", - "func": "msg.payload = msg.payload.acq_maximum_mesh;\nreturn msg;", - "outputs": 1, - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 330, - "y": 400, - "wires": [ - [ - "10eb31a2d7a6590c" - ] - ] - }, - { - "id": "58de1340.3cc354", - "type": "ui_text_input", - "z": "b771c342.49603", - "name": "sample_dilution_factor", - "label": "Concentration Factor", - "tooltip": "0.5 if diluted by two; 2 if concentrated by a factor 2", - "group": "3e1ba03d.f01d8", - "order": 13, - "width": 10, - "height": 1, - "passthru": true, - "mode": "number", - "delay": "300", - "topic": "sample_dilution_factor", - "sendOnBlur": true, - "className": "", - "topicType": "str", - "x": 640, - "y": 480, - "wires": [ - [ - "9f501f49.45645" - ] - ] - }, - { - "id": "4f6afc5a.81e454", - "type": "ui_text_input", - "z": "b771c342.49603", - "name": "sample_total_volume", - "label": "Filtered volume (in L)", - "tooltip": "Calculated or hand filled", - "group": "3e1ba03d.f01d8", - "order": 11, - "width": 0, - "height": 0, - "passthru": true, - "mode": "text", - "delay": "300", - "topic": "sample_total_volume", - "sendOnBlur": true, - "className": "", - "topicType": "str", - "x": 1220, - "y": 760, - "wires": [ - [ - "e1f2f6eb.fe1dd" - ] - ] - }, - { - "id": "e1f2f6eb.fe1dd", - "type": "function", - "z": "b771c342.49603", - "name": "set global", - "func": "global.set(msg.topic,msg.payload);", - "outputs": 1, - "noerr": 0, - "initialize": "", - "finalize": "", - "x": 1420, - "y": 760, - "wires": [ - [] - ] - }, - { - "id": "e9bc112c.eb75f8", - "type": "function", - "z": "b771c342.49603", - "name": "Calculate volume", - "func": "if (msg.topic == \"sample_total_flowmeter_start\"){\n context.set(\"sample_total_flowmeter_start\", msg.payload);\n}\nif (msg.topic == \"sample_total_flowmeter_end\"){\n context.set(\"sample_total_flowmeter_end\", msg.payload);\n}\n\nif (context.keys().length == 2){\n sample_total_volume = context.get(\"sample_total_flowmeter_end\") - context.get(\"sample_total_flowmeter_start\");\n msg.topic=\"sample_total_volume\"\n msg.payload=sample_total_volume\n return msg\n}\n", - "outputs": 1, - "noerr": 0, - "initialize": "", - "finalize": "", - "x": 1610, - "y": 240, - "wires": [ - [ - "4f6afc5a.81e454" - ] - ] - }, - { - "id": "cdd4181922eecf11", - "type": "ui_text_input", - "z": "b771c342.49603", - "name": "sample_speed_through_water", - "label": "Speed Through Water (kts)", - "tooltip": "in knots", - "group": "cf5d9f0e.d57e7", - "order": 2, - "width": 10, - "height": 1, - "passthru": true, - "mode": "number", - "delay": "300", - "topic": "sample_speed_through_water", - "sendOnBlur": true, - "className": "", - "topicType": "str", - "x": 610, - "y": 520, - "wires": [ - [ - "9f501f49.45645" - ] - ] - }, - { - "id": "1aad56b31b5647ce", - "type": "ui_text_input", - "z": "b771c342.49603", - "name": "acq_minimum_mesh", - "label": "Minimal fraction size (μm)", - "tooltip": "Net mesh pore size or minimal filtration mesh pore size", - "group": "3e1ba03d.f01d8", - "order": 7, - "width": 5, - "height": 1, - "passthru": true, - "mode": "number", - "delay": "300", - "topic": "acq_minimum_mesh", - "sendOnBlur": true, - "className": "", - "topicType": "str", - "x": 640, - "y": 360, - "wires": [ - [ - "9f501f49.45645" - ] - ] - }, - { - "id": "10eb31a2d7a6590c", - "type": "ui_text_input", - "z": "b771c342.49603", - "name": "acq_maximum_mesh", - "label": "Maximal fraction size (μm)", - "tooltip": "Maximal filtration mesh pore size", - "group": "3e1ba03d.f01d8", - "order": 8, - "width": 5, - "height": 1, - "passthru": true, - "mode": "number", - "delay": "300", - "topic": "acq_maximum_mesh", - "sendOnBlur": true, - "className": "", - "topicType": "str", - "x": 640, - "y": 400, - "wires": [ - [ - "9f501f49.45645" - ] - ] - }, - { - "id": "3ac7b631f5d8ef90", - "type": "function", - "z": "b771c342.49603", - "name": "Culture check", - "func": "var activation_msg = {}\nvar date_msg = {}\nvar timestamp=new Date().toISOString();\n\nif (msg.payload === \"culture\"){\n activation_msg.payload = {\"group\":{\"show\":[\"Sample_Culture_Date_and_Time\"],\"hide\":[\"Sample_Sample_Location\", \"Sample_Net_Metadata\"]}};\n global.set(\"object_lat\", \"-90.0000\")\n global.set(\"object_lon\", \"0.0000\")\n date_msg.payload = {\"object_date\": timestamp.split('T')[0],\n \"object_time\": timestamp.split('T')[1].split('.')[0]}\n return [activation_msg, date_msg];\n}\nelse if (msg.payload === \"test\"){\n activation_msg.payload = {\"group\":{\"hide\":[\"Sample_Culture_Date_and_Time\", \"Sample_Sample_Location\", \"Sample_Net_Metadata\"]}};\n global.set(\"object_lat\", \"-90.0000\")\n global.set(\"object_lon\", \"0.0000\")\n global.set(\"object_date\", timestamp.split('T')[0])\n global.set(\"object_time\", timestamp.split('T')[1].split('.')[0])\n return [activation_msg, null];\n}\nelse{\n return [null, null]\n}\n\n", - 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\n\n
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\n The PlanktoScope software application consists of three components: a Node-RED dashboard which provides the user interface you're using; a Hardware Controller\n which executes commands sent from the Node-RED dashboard for hardware control and image acquisition; and a Segmenter which processes an acquired dataset of\n images and isolates objects from those images. Each component has its own independent log of messages, managed separately from the logs for the other components.\n

\n

\n All three components have live-updating logs which you can monitor. Additionally, the Hardware Controller and the Segmenter also save all of their log messages\n to files which you can browse and download. Those software components create a new log file each time they start, and the name of the log file includes the time\n in the PlanktoScope's clock when the software component started. However, if your PlanktoScope's clock is usually wrong, it makes the log files difficult to navigate.\n This will be fixed in a future version of the software.\n

\n

\n If you need to share your logs with other people (e.g. on Slack or GitHub), you should open the \"Downloadable Logs\" links, and then you can select one file or multiple\n log files for downloading as a zip archive.\n

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"label": "Camera Name", + "format": "{{msg.payload}}", + "layout": "row-spread", + "x": 600, + "y": 760, + "wires": [] + }, + { + "id": "30067f35.532f2", + "type": "link in", + "z": "1371dec5.76e671", + "name": "Camera Name", + "links": ["559a8085.1d6b9"], + "x": 155, + "y": 760, + "wires": [["f783aefd.c3bfd8"]] + }, + { + "id": "eaf74a43.fa27d", + "type": "switch", + "z": "1371dec5.76e671", + "name": "if disk > 90%", + "property": "payload", + "propertyType": "msg", + "rules": [ + { + "t": "gte", + "v": "90", + "vt": "num" + } + ], + "checkall": "true", + "repair": false, + "outputs": 1, + "x": 590, + "y": 120, + "wires": [["6d09f428.930bcc"]] + }, + { + "id": "46d5e78b.15f998", + "type": "ui_toast", + "z": "1371dec5.76e671", + "position": "dialog", + "displayTime": "10", + "highlight": "", + "sendall": true, + "outputs": 1, + "ok": "OK", + "cancel": "", + "raw": false, + "topic": "", + "name": "", + "x": 1090, + "y": 120, + "wires": [[]] + }, + { + "id": "24df077a.cb252", + "type": 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"wires": [["3e64877a.9684b", "8343fa69.49339"]] + }, + { + "id": "aa84b912c996c69e", + "type": "change", + "z": "1371dec5.76e671", + "name": "Get repo", + "rules": [ + { + "t": "set", + "p": "payload", + "pt": "msg", + "to": "payload.repo", + "tot": "msg" + } + ], + "action": "", + "property": "", + "from": "", + "to": "", + "reg": false, + "x": 580, + "y": 500, + "wires": [["fd55e7a43d9bdbbb"]] + }, + { + "id": "fd55e7a43d9bdbbb", + "type": "function", + "z": "1371dec5.76e671", + "name": "set global", + "func": "global.set(\"process_source\", msg.payload);\n", + "outputs": 1, + "timeout": "", + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 820, + "y": 480, + "wires": [[]] + }, + { + "id": "fba22dc2c16b3ec8", + "type": "change", + "z": "1371dec5.76e671", + "name": "Get commit", + "rules": [ + { + "t": "set", + "p": "payload", + "pt": "msg", + "to": "payload.commit", + "tot": "msg" + } + ], + "action": "", + "property": "", + "from": "", + "to": "", + "reg": 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\n

\n The instrument's system time is different from your web browser's time by {{drift}}.\n As a result, timestamps in your datasets will be incorrect.\n Additionally, system metrics will not be recorded or shown correctly.\n Additionally, you will see incorrectly-aligned graphs in the metrics below.\n

\n

Please change the instrument's system time or your web browser's time to accurate values.

\n

\n \n

\n
\n\n
\n

Loading system metrics, please wait...

\n
\n\n
\n \n
\n\n\n", + "storeOutMessages": true, + "fwdInMessages": true, + "resendOnRefresh": false, + "templateScope": "local", + "className": "", + "x": 330, + "y": 280, + "wires": [[]] + }, + { + "id": "aa2e4cd182dbc776", + "type": "function", + "z": "1371dec5.76e671", + "name": "Get system time", + "func": "var date = new Date();\ndate.setSeconds(0, 0);\nmsg.payload = (\n date.toISOString().replace('T', ' ').replace(/:\\d+\\.\\d+Z/,' UTC')\n);\nreturn msg", + "outputs": 1, + "timeout": "", + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 340, + "y": 240, + "wires": [["7c9ee522f6dbd3b0"]] + }, + { + "id": "7c9ee522f6dbd3b0", + "type": "ui_text", + "z": "1371dec5.76e671", + "group": "ce9e278.781eed8", + "order": 5, + "width": 0, + "height": 0, + "name": "", + "label": "System Time", + "format": "{{msg.payload}}", + "layout": "row-spread", + "className": "", + "style": false, + "font": "", + "fontSize": "", + "color": "#000000", + "x": 590, + "y": 240, + "wires": [] + }, + { + "id": "6dc9862f2eebe935", + "type": "http in", + "z": "1371dec5.76e671", + "name": "POST /api/system-time", + "url": "/api/system-time", + "method": "post", + "upload": false, + "swaggerDoc": "", + "x": 120, + "y": 360, + "wires": [["a7994a561866dc94", "dea222e9a6553cac"]] + }, + { + "id": "1c4113d4c933fd4b", + "type": "ui_toast", + "z": "1371dec5.76e671", + "position": "top right", + "displayTime": "3", + "highlight": "", + "sendall": true, + "outputs": 0, + "ok": "OK", + "cancel": "", + "raw": false, + "className": "", + "topic": "Setting system time", + "name": "", + "x": 610, + "y": 340, + "wires": [] + }, + { + "id": "a7994a561866dc94", + "type": "function", + "z": "1371dec5.76e671", + "name": "Get system time", + "func": "var date = new Date(msg.payload.timestamp);\nmsg.payload = (\n date.toISOString().replace('T', ' ').replace(/:\\d+\\.\\d+Z/,' UTC')\n);\nreturn msg", + "outputs": 1, + "timeout": "", + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 340, + "y": 340, + "wires": [["1c4113d4c933fd4b", "423659c62bae0524"]] + }, + { + "id": "814ce40bfc413777", + "type": "exec", + "z": "1371dec5.76e671", + "command": "sudo date -s", + "addpay": "payload", + "append": "", + "useSpawn": "", + "timer": "", + "winHide": false, + "name": "Set system time", + "x": 600, + "y": 380, + "wires": [[], [], []] + }, + { + "id": "dea222e9a6553cac", + "type": "function", + "z": "1371dec5.76e671", + "name": "Prepare timestamp", + "func": "msg.payload = ('@' + msg.payload.timestamp).slice(0, -3);\nreturn msg;", + "outputs": 1, + "timeout": "", + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 350, + "y": 380, + "wires": [["814ce40bfc413777"]] + }, + { + "id": "f6f570b10c675854", + "type": "ui_template", + "z": "1371dec5.76e671", + "group": "ce9e278.781eed8", + "name": "Browser time", + "order": 6, + "width": "6", + "height": "1", + "format": "
\n

Browser Time

\n

{{time}}

\n
\n\n", + "storeOutMessages": true, + "fwdInMessages": true, + "resendOnRefresh": false, + "templateScope": "local", + "className": "", + "x": 330, + "y": 200, + "wires": [[]] + }, + { + "id": "3822b843fda94733", + "type": "http in", + "z": "1371dec5.76e671", + "name": "GET /api/system-time", + "url": "/api/system-time", + "method": "get", + "upload": false, + "swaggerDoc": "", + "x": 120, + "y": 420, + "wires": [["5b0a65d3fe187424"]] + }, + { + "id": "5b0a65d3fe187424", + "type": "function", + "z": "1371dec5.76e671", + "name": "Get system time", + "func": "var date = new Date();\nmsg.payload = {'timestamp': date.getTime()};\nreturn msg", + "outputs": 1, + "timeout": "", + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 340, + "y": 420, + "wires": [["312a15407574b38e"]] + }, + { + "id": "423659c62bae0524", + "type": "http response", + "z": "1371dec5.76e671", + "name": "Send POST response", + "statusCode": "", + "headers": {}, + "x": 620, + "y": 300, + "wires": [] + }, + { + "id": "312a15407574b38e", + "type": "http response", + "z": "1371dec5.76e671", + "name": "Send GET response", + "statusCode": "", + "headers": { + "Content-Type": "application/json; charset=UTF-8" + }, + "x": 620, + "y": 420, + "wires": [] + }, + { + "id": "1fdf77b5.24e4e", + "type": "mqtt in", + "z": "9a22e67a.378818", + "name": "", + "topic": "status/#", + "qos": "0", + "datatype": "json", + "broker": "8dc3722c.06efa8", + "nl": false, + "rap": false, + "inputs": 0, + "x": 290, + "y": 340, + "wires": [["fa73983d.318188"]] + }, + { + "id": "4a1e9e3e.27506", + "type": "switch", + "z": "9a22e67a.378818", + "name": "Filter segmenter out", + "property": "topic", + "propertyType": "msg", + "rules": [ + { + "t": "else" + }, + { + "t": "cont", + "v": "status/segmenter", + "vt": "str" + } + ], + "checkall": "true", + "repair": false, + "outputs": 2, + "x": 620, + "y": 340, + "wires": [["58f2e0f.4e8b12"], ["dcf5bd45.16a8d"]] + }, + { + "id": "fa73983d.318188", + "type": "json", + "z": "9a22e67a.378818", + "name": "", + "property": "payload", + "action": "obj", + "pretty": true, + "x": 430, + "y": 340, + "wires": [["4a1e9e3e.27506"]] + }, + { + "id": "58f2e0f.4e8b12", + "type": "link out", + "z": "9a22e67a.378818", + "name": "Fluidic module status", + "links": ["bb628f8d.98f108"], + "x": 795, + "y": 320, + "wires": [] + }, + { + "id": "dcf5bd45.16a8d", + "type": "link out", + "z": "9a22e67a.378818", + "name": "Segmenter module status", + "links": ["25867454.a8e334"], + "x": 795, + "y": 360, + "wires": [] + }, + { + "id": "e41870d7.300eb8", + "type": "link out", + "z": "1eaf21c8.f7a21e", + "name": "Stepper config change", + "mode": "link", + "links": ["438febd245a9f73c"], + "x": 1495, + "y": 380, + "wires": [] + }, + { + "id": "2068e7f.f4efb18", + "type": "delay", + "z": "1eaf21c8.f7a21e", + "name": "", + "pauseType": "delay", + "timeout": "1", + "timeoutUnits": "seconds", + "rate": "1", + "nbRateUnits": "1", + "rateUnits": "second", + "randomFirst": "1", + "randomLast": "5", + "randomUnits": "seconds", + "drop": false, + "outputs": 1, + "x": 1180, + "y": 380, + "wires": [["e41870d7.300eb8"]] + }, + { + "id": "8e3b3d3c.955148", + "type": "subflow:4ed26b8b.253504", + "z": "1eaf21c8.f7a21e", + "name": "", + "env": [], + "x": 1220, + "y": 420, + "wires": [] + }, + { + "id": "54ba7f16.709ad8", + "type": "change", + "z": "1eaf21c8.f7a21e", + "name": "Get pump_steps_per_ml", + "rules": [ + { + "t": "set", + "p": "payload", + "pt": "msg", + "to": "payload.pump_steps_per_ml", + "tot": "msg" + } + ], + "action": "", + "property": "", + "from": "", + "to": "", + "reg": false, + "x": 670, + "y": 400, + "wires": [["ee58b91c.396108"]] + }, + { + "id": "ee58b91c.396108", + "type": "ui_text_input", + "z": "1eaf21c8.f7a21e", + "name": "pump_steps_per_ml", + "label": "Pump: steps per mL", + "tooltip": "", + "group": "6be36295.0ab324", + "order": 6, + "width": 0, + "height": 0, + "passthru": false, + "mode": "number", + "delay": "2000", + "topic": "pump_steps_per_ml", + "sendOnBlur": true, + "className": "", + "topicType": "str", + "x": 940, + "y": 400, + "wires": [["2068e7f.f4efb18", "8e3b3d3c.955148"]] + }, + { + "id": "7534dfd9.8cf3e8", + "type": "ui_template", + "z": "1eaf21c8.f7a21e", + "group": "6be36295.0ab324", + "name": "Information", + "order": 1, + "width": "8", + "height": "3", + "format": "
\n

\n Changing one of these values will cause the Python hardware controller to restart, to reload the new hardware configuration.\n

\n

\n Warning: selecting a hardware version from the dropdown menu below will also overwrite all of your hardware settings, including your camera white balance settings.\n

\n

\n If you are not sure, you probably should not be touching anything here!\n

\n
\n", + "storeOutMessages": true, + "fwdInMessages": true, + "resendOnRefresh": true, + "templateScope": "local", + "className": "", + "x": 610, + "y": 40, + "wires": [[]] + }, + { + "id": "a7e5c7f4.644678", + "type": "ui_dropdown", + "z": "1eaf21c8.f7a21e", + "name": "", + "label": "Hardware version", + "tooltip": "", + "place": "Select option", + "group": "6be36295.0ab324", + "order": 2, + "width": 0, + "height": 0, + "passthru": false, + "multiple": false, + "options": [ + { "label": "", - "tooltip": "", - "color": "", - "bgcolor": "", - "icon": "fa-angle-double-down fa-3x", - "payload": "DOWN", - "payloadType": "str", - "topic": "actuator/focus", - "x": 550, - "y": 800, - "wires": [ - [ - "65ad39d.b6d4d48" - ] - ] - }, - { - "id": "edda4df4.76de2", - "type": "ui_button", - "z": "bccd1f23.87219", - "name": "up", - "group": "fbd92986.1028c8", - "order": 1, - "width": 4, - "height": 1, - "passthru": false, + "value": "PlanktoScope v2.1", + "type": "str" + }, + { "label": "", - "tooltip": "", - "color": "", - "bgcolor": "", - "icon": "fa-angle-double-up fa-3x", - "payload": "UP", - "payloadType": "str", - "topic": "actuator/focus", - "x": 550, - "y": 760, - "wires": [ - [ - "65ad39d.b6d4d48" - ] - ] - }, - { - "id": "68962547.34a67c", - "type": "ui_text_input", - "z": "bccd1f23.87219", - "name": "pump_manual_volume", - "label": "Volume to pass (ml)", - "tooltip": "Tiny values are accepted down to 0.001mL", - "group": "707d9797.c8e798", - "order": 3, - "width": 2, - "height": 1, - "passthru": true, - "mode": "text", - "delay": "300", - "topic": "pump_manual_volume", - "sendOnBlur": true, - "className": "", - "topicType": "str", - "x": 600, - "y": 420, - "wires": [ - [ - "dc48dc42.98d18" - ] - ] - }, - { - "id": "6c792043.b6ff9", - "type": "ui_ui_control", - "z": "bccd1f23.87219", - "name": "", - "events": "change", - "x": 560, - "y": 1140, - "wires": [ - [] - ] - }, - { - "id": "902429eb.ceacb8", - "type": "ui_toast", - "z": "bccd1f23.87219", - "position": "dialog", - "displayTime": "3", - "highlight": "", - "sendall": true, - "outputs": 1, - "ok": "OK", - "cancel": "", - "raw": false, - "topic": "", - "name": "", - "x": 570, - "y": 1220, - "wires": [ - [] - ] - }, - { - "id": "fe840e05.b46f3", - "type": "function", - "z": "bccd1f23.87219", - "name": "Check form", - "func": "var acq_fnumber_objective= global.get(\"acq_fnumber_objective\");\n\nif (acq_fnumber_objective === undefined || acq_fnumber_objective === \"\") {\n msg.topic = \"Missing entry :\";\n msg.payload = \"Focal Length of the objective\";\n return [null, msg];\n}\n\nmsg.topic = \"Change Tab\";\nmsg.payload={\"tab\":\"Fluidic Acquisition\"};\nreturn [msg, null];", - "outputs": 2, - "noerr": 0, - "initialize": "", - "finalize": "", - "x": 330, - "y": 1180, - "wires": [ - [ - "6c792043.b6ff9", - "326a1d95.ca21aa" - ], - [ - "902429eb.ceacb8" - ] - ], - "outputLabels": [ - "message", - "error" - ] - }, - { - "id": "5846b1d4.7971b", - "type": "ui_button", - "z": "bccd1f23.87219", - "name": "Backward", - "group": "707d9797.c8e798", - "order": 2, - "width": 1, - "height": 1, - "passthru": false, + "value": "PlanktoScope v2.3", + "type": "str" + }, + { "label": "", - "tooltip": "", - "color": "", - "bgcolor": "", - "icon": "fa-rotate-left fa-2x", - "payload": "BACKWARD", - "payloadType": "str", - "topic": "actuator/pump", - "x": 560, - "y": 280, - "wires": [ - [ - "3cb96380.e575ec" - ] - ] - }, - { - "id": "2cab680b.baf888", - "type": "ui_button", - "z": "bccd1f23.87219", - "name": "Forward", - "group": "707d9797.c8e798", - "order": 4, - "width": 1, - "height": 1, - "passthru": true, + "value": "PlanktoScope v2.5", + "type": "str" + }, + { "label": "", - "tooltip": "", - "color": "", - "bgcolor": "", - "icon": "fa-rotate-right fa-2x", - "payload": "FORWARD", - "payloadType": "str", - "topic": "actuator/pump", - "x": 560, - "y": 320, - "wires": [ - [ - "3cb96380.e575ec" - ] - ] - }, - { - "id": "8038414a.34461", - "type": "function", - "z": "bccd1f23.87219", - "name": "Calculate optics", - "func": "var acq_fnumber_objective = String(global.get(\"acq_fnumber_objective\"));\nvar acq_camera = global.get(\"acq_camera\")\n\n// Those values needs to be recalculated, they are not good!\nif (acq_camera == \"HQ Camera\"){\n switch(acq_fnumber_objective) {\n case \"25\":\n acq_magnification= 0.6;\n process_pixel= 1.56;\n sug_min= 60;\n sug_max= 670;\n sug_flowrate= 3;\n break;\n case \"16\":\n acq_magnification= 1.6;\n process_pixel= 1.01;\n sug_min= 40;\n sug_max= 430;\n sug_flowrate= 2.4;\n break;\n case \"12\":\n acq_magnification= 1.20;\n process_pixel= 0.79;\n sug_min= 30;\n sug_max= 340;\n sug_flowrate= 1.25;\n break;\n case \"8\":\n acq_magnification= 1.78;\n process_pixel= 0.53;\n sug_min= 20;\n sug_max= 230;\n sug_flowrate= 0.42;\n break;\n case \"6\":\n acq_magnification= 2.36;\n process_pixel= 0.41;\n sug_min= 15;\n sug_max= 170;\n sug_flowrate= 0.32;\n break;\n }\n}\nelse if (acq_camera == \"Camera v2.1\"){\n switch(acq_fnumber_objective) {\n case \"25\":\n acq_magnification= 0.6;\n process_pixel= 1.86;\n sug_min= 60;\n sug_max= 670;\n sug_flowrate= 3;\n break;\n case \"16\":\n acq_magnification= 1.6;\n process_pixel= 0.7;\n sug_min= 40;\n sug_max= 430;\n sug_flowrate= 2.4;\n break;\n case \"12\":\n acq_magnification= 1.20;\n process_pixel= 0.94;\n sug_min= 30;\n sug_max= 340;\n sug_flowrate= 1.25;\n break;\n case \"8\":\n acq_magnification= 1.78;\n process_pixel= 0.63;\n sug_min= 20;\n sug_max= 230;\n sug_flowrate= 0.42;\n break;\n case \"6\":\n acq_magnification= 2.36;\n process_pixel= 0.48;\n sug_min= 15;\n sug_max= 170;\n sug_flowrate= 0.32;\n break;\n }\n}else {\n acq_magnification= \"ERROR\";\n process_pixel= \"ERROR\";\n sug_min= \"ERROR\";\n sug_max= \"ERROR\";\n sug_flowrate= \"ERROR\";\n}\n\nvar process_pixel_fixed = global.get(\"process_pixel_fixed\")\n\nif (process_pixel_fixed !== undefined && process_pixel_fixed !== \"\") {\n process_pixel = process_pixel_fixed\n}\n\nglobal.set(\"process_pixel\",process_pixel);\n\nglobal.set(\"acq_magnification\",acq_magnification);\n\n\nreturn [{payload: acq_fnumber_objective}, {payload: acq_magnification}, {payload: process_pixel}, {payload: sug_min}, {payload: sug_max}];", - "outputs": 5, - "timeout": "", - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 1080, - "y": 120, - "wires": [ - [], - [], - [], - [], - [] - ], - "inputLabels": [ - "acq_fnumber_objective" - ], - "outputLabels": [ - "acq_magnification", - "process_pixel", - "sug_min", - "sug_max", - "" - ] - }, - { - "id": "f61aaed5.1e64", - "type": "ui_button", - "z": "bccd1f23.87219", - "name": "", - "group": "7a0b4877.a5d268", - "order": 1, - "width": 2, - "height": 1, - "passthru": false, - "label": "Previous", - "tooltip": "", - "color": "#097479", - "bgcolor": "white", - "icon": "keyboard_return", - "payload": "{\"tab\":\"Sample\"}", - "payloadType": "json", - "topic": "", - "x": 140, - "y": 1140, - "wires": [ - [ - "6c792043.b6ff9" - ] - ] - }, - { - "id": "9ba6ec0a.22c96", - "type": "ui_button", - "z": "bccd1f23.87219", - "name": "", - "group": "7a0b4877.a5d268", - "order": 2, - "width": 2, - "height": 1, - "passthru": false, - "label": "Continue", - "tooltip": "", - "color": "#097479", - "bgcolor": "white", - "icon": "keyboard_tab", - "payload": "{\"tab\":\"Home\"}", - "payloadType": "json", - "topic": "", - "x": 140, - "y": 1180, - "wires": [ - [ - "fe840e05.b46f3" - ] - ] - }, - { - "id": "3cb96380.e575ec", - "type": "function", - "z": "bccd1f23.87219", - "name": "pump", - "func": "var manual_volume= global.get(\"pump_manual_volume\");\nvar flowrate= global.get(\"pump_flowrate\");\n\nif (manual_volume === undefined || manual_volume === \"\" || manual_volume === null) {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Volume to pass\";\n return [null, msg];\n}\nelse if (flowrate === undefined || flowrate === \"\" || flowrate === null) {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Flowrate\";\n return [null, msg];\n}\nelse {\n msg.topic = \"actuator/pump\";\n // msg.payload is FORWARD or BACKWARD here\n msg.payload={\"action\":\"move\", \n \"direction\":msg.payload,\n \"volume\":manual_volume,\n \"flowrate\":flowrate};\n}\nreturn [msg, null];", - "outputs": 2, - "noerr": 0, - "initialize": "", - "finalize": "", - "x": 750, - "y": 300, - "wires": [ - [ - "bdc8ce57.de1f08" - ], - [ - "8bcce348.efc1a" - ] - ], - "inputLabels": [ - "direction" - ], - "outputLabels": [ - "message", - "error" - ] - }, - { - "id": "8bcce348.efc1a", - "type": "ui_toast", - "z": "bccd1f23.87219", - "position": "dialog", - "displayTime": "3", - "highlight": "", - "sendall": true, - "outputs": 1, - "ok": "OK", - "cancel": "", - "raw": false, - "topic": "", - "name": "", - "x": 1090, - "y": 300, - "wires": [ - [] - ] - }, - { - "id": "bdc8ce57.de1f08", - "type": "mqtt out", - "z": "bccd1f23.87219", - "name": "", - "topic": "", - "qos": "", - "retain": "", - "broker": "8dc3722c.06efa8", - "x": 1210, - "y": 260, - "wires": [] - }, - { - "id": "d71d224f.0585d8", - "type": "ui_toast", - "z": "bccd1f23.87219", - "position": "dialog", - "displayTime": "3", - "highlight": "", - "sendall": true, - "outputs": 1, - "ok": "OK", - "cancel": "", - "raw": false, - "topic": "", - "name": "", - 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\n \n \n \n \n \n \n \n \n \n
\n

Sample

\n

id:

\n

project:\n

\n

ship:

\n

operator:\n

\n

sampling gear:\n

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concentrated volume:\n

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gear net opening:\n

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total volume filtered:\n

\n 		\n

Acquisition

\n

id:

\n

instrument:\n

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instrument id:\n

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camera:

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celltype: \n

\n

minimum mesh:\n

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maximum mesh:\n

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min esd: \n

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max esd: \n

\n

volume:

\n

magnification:\n

\n

fnumber objective:\n

\n

software: \n

\n
\n

Object

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latitude: \n

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longitude: \n

\n

latitude end:\n

\n

longitude end:\n

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date:

\n

time:

\n

date end:\n

\n

time end:\n

\n

depth min:\n

\n

depth max:\n

\n 		\n

Process

\n

pixel: \n

\n

id:

\n
\n
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"", - "retain": "", - "broker": "8dc3722c.06efa8", - "x": 610, - "y": 480, - "wires": [] - }, - { - "id": "bb62da8a.ebc328", - "type": "ui_switch", - "z": "baa1e3d9.cb29d", - "name": "Pump direction", - "label": "Pump direction", - "tooltip": "BACKWARD / FORWARD", - "group": "4322c187.e73e5", - "order": 9, - "width": 5, - "height": 1, - "passthru": true, - "decouple": "false", - "topic": "pump_direction", - "style": "", - "onvalue": "FORWARD", - "onvalueType": "str", - "onicon": "", - "oncolor": "", - "offvalue": "BACKWARD", - "offvalueType": "str", - "officon": "", - "offcolor": "", - "x": 420, - "y": 520, - "wires": [ - [ - "6b2239f3.41fa3" - ] - ] - }, - { - "id": "52ea7d01.711034", - "type": "function", - "z": "baa1e3d9.cb29d", - "name": "Encapsulate config", - "func": "msg.payload = {\n\t\"action\": \"update_config\",\n\t\"config\": {\n \t\"description\": {\n \t\t\"sample_project\": \"Project's name\",\n \t\t\"sample_id\": \"Sample ID\",\n \t\t\"sample_uuid\": \"Sample UUID (Autogenerated)\",\n \t\t\"sample_ship\": \"Ship's name\",\n \t\t\"sample_operator\": \"Operator's name\",\n \t\t\"sample_sampling_gear\": \"Sampling gear used\",\n \t\t\"sample_concentrated_sample_volume\": \"Volume of concentrated sample, in mL\",\n \t\t\"sample_total_volume\": \"Total volume filtered by the net used, in L\",\n \t\t\"sample_dilution_factor\": \"Dilution factor of the sample, 0.5 if diluted by 2, 2 if concentrated by 2\",\n \t\t\"sample_speed_through_water\": \"Speed of the boat through water when sampling, in kts\",\n \t\t\"acq_id\": \"Acquisition ID\",\n \t\t\"acq_uuid\": \"Acquisition UUID (Autogenerated)\",\n \t\t\"acq_instrument\": \"Instrument type\",\n \t\t\"acq_instrument_id\": \"Instrument ID\",\n \t\t\"acq_celltype\": \"Flow cell dimension thickness, in µm\",\n \t\t\"acq_minimum_mesh\": \"Minimum filtration mesh size, in µm\",\n \t\t\"acq_maximum_mesh\": \"Maximum filtration mesh size, in µm\",\n \t\t\"acq_min_esd\": \"\",\n \t\t\"acq_max_esd\": \"\",\n \t\t\"acq_volume\": \"Pumped volume, in mL\",\n\t\t \"acq_imaged_volume\": \"Total imaged volume, in mL\",\n \t\t\"acq_magnification\": \"Optical magnification\",\n \t\t\"acq_fnumber_objective\": \"Focal length of the objective, in mm\",\n \t\t\"acq_camera_name\": \"Name of the camera used\",\n \t\t\"acq_nb_frame\": \"Number of picture taken\",\n \"acq_local_datetime\": \"Instrument local datetime\",\n \"acq_camera_resolution\": \"Resolution of the images\",\n \"acq_camera_iso\": \"ISO Number of the images\",\n \"acq_camera_shutter_speed\": \"Shutter speed of the images, in µs\",\n \"acq_software\": \"Software version number\",\n \t\t\"object_date\": \"Sample collection date (or beginning if using a net)\",\n \t\t\"object_time\": \"Sample collection time (or beginning if using a net)\",\n \t\t\"object_lat\": \"Sample collection latitude (or beginning if using a net)\",\n \t\t\"object_lon\": \"Sample collection longitude (or beginning if using a net)\",\n \t\t\"object_depth_min\": \"Sample collection minimal depth, in m\",\n \t\t\"object_depth_max\": \"Sample collection maximum depth, in m\",\n \t\t\"process_pixel\": \"Pixel imaging resolution, in µm/pixel\",\n \t\t\"process_datetime\": \"Segmentation timestamp\",\n \t\t\"process_id\": \"Segmentation ID\",\n \t\t\"process_uuid\": \"Segmentation UUID (Autogenerated)\",\n \t\t\"process_source\": \"Code source link of the executed code\",\n \t\t\"process_commit\": \"Version reference of the executed code\",\n \t\t\"sample_gear_net_opening\": \"Sample mouth opening dimension, in mm\",\n \t\t\"object_date_end\": \"Sample end collection date when using a net\",\n \t\t\"object_time_end\": \"Sample end collection time when using a net\",\n \t\t\"object_lat_end\": \"Sample end collection latitude when using a net\",\n \t\t\"object_lon_end\": \"Sample end collection longitude when using a net\",\n \t},\n\t\t\"sample_project\": global.get(\"sample_project\"),\n\t\t\"sample_id\": global.get(\"sample_project\") + \"_\" + global.get(\"sample_id\"),\n\t\t\"sample_ship\": global.get(\"sample_ship\"),\n\t\t\"sample_operator\": global.get(\"sample_operator\"),\n\t\t\"sample_sampling_gear\": global.get(\"sample_sampling_gear\"),\n\t\t\"sample_concentrated_sample_volume\": global.get(\"sample_concentrated_sample_volume\"),\n\t\t\"sample_total_volume\": global.get(\"sample_total_volume\"),\n\t\t\"sample_dilution_factor\": global.get(\"sample_dilution_factor\"),\n\t\t\"sample_speed_through_water\": global.get(\"sample_speed_through_water\"),\n\n\t\t\"acq_id\": global.get(\"sample_project\") + \"_\" + global.get(\"sample_id\")+ \"_\" + global.get(\"acq_id\"),\n\t\t\"acq_instrument\": global.get(\"acq_instrument\"),\n\t\t\"acq_instrument_id\": global.get(\"acq_instrument_id\"),\n\t\t\"acq_celltype\": global.get(\"acq_celltype\"),\n\t\t\"acq_minimum_mesh\": global.get(\"acq_minimum_mesh\"),\n\t\t\"acq_maximum_mesh\": global.get(\"acq_maximum_mesh\"),\n\t\t\"acq_min_esd\": 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- "func": "msg.payload = msg.payload.acq_id;\nreturn msg;", - "outputs": 1, - "timeout": "", - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 330, - "y": 180, - "wires": [ - [ - "6b34c456.83178c" - ] - ] - }, - { - "id": "de2c90cf.b73b08", - "type": "function", - "z": "baa1e3d9.cb29d", - "name": "get acq_celltype", - "func": "msg.topic = 'acq_celltype';\nmsg.payload = msg.payload.acq_celltype;\nreturn msg;", - "outputs": 1, - "timeout": "", - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 340, - "y": 100, - "wires": [ - [ - "cc0ca68b.4263a8" - ] - ] - }, - { - "id": "b402f719.55bc98", - "type": "inject", - "z": "baa1e3d9.cb29d", - "name": "Default: FORWARD", - "props": [ - { - "p": "payload" - }, - { - "p": "topic", - "vt": "str" - } - ], - "repeat": "", - "crontab": "", - "once": true, - "onceDelay": 0.1, - "topic": "pump_direction", - "payload": "FORWARD", - "payloadType": "str", - "x": 180, - "y": 520, - "wires": [ - [ - "bb62da8a.ebc328" - ] - ] - }, - { - "id": "6b2239f3.41fa3", - "type": "function", - "z": "baa1e3d9.cb29d", - "name": "set global", - "func": "global.set(msg.topic, msg.payload);", - "outputs": 1, - "noerr": 0, - "initialize": "", - "finalize": "", - "x": 620, - "y": 520, - "wires": [ - [] - ] - }, - { - "id": "51b4d0df.d70a88", - "type": "ui_text_input", - "z": "baa1e3d9.cb29d", - "name": "nb_frame", - "label": "Number of images to acquire", - "tooltip": "", - "group": "4322c187.e73e5", - "order": 2, - "width": 5, - "height": 1, - "passthru": true, - "mode": "number", - "delay": 300, - "topic": "nb_frame", - "sendOnBlur": true, - "className": "", - "topicType": "str", - "x": 680, - "y": 220, - "wires": [ - [ - "fb887036.12429", - "67091ac0.8f9f6c", - "99b11fe4.2795d" - ] - ] - }, - { - "id": "999065ca.27edb8", - "type": "switch", - "z": "baa1e3d9.cb29d", - "name": "topic filter", - "property": "topic", - "propertyType": "msg", - "rules": [ - { - "t": "eq", - "v": "status/pump", - "vt": "str" - }, - { - "t": "eq", - "v": "status/focus", - "vt": "str" - }, - { - "t": "eq", - "v": "status/light", - "vt": "str" - }, - { - "t": "eq", - "v": "status/imager", - "vt": "str" - } - ], - "checkall": "true", - "repair": false, - "outputs": 4, - "x": 320, - "y": 800, - "wires": [ - [ - "a46a1e7f.88a92", - "6742014e.1bb238" - ], - [ - "c516d9ea.f7f6e", - "6742014e.1bb238" - ], - [ - "6742014e.1bb238" - ], - [ - "307c851e.fb0f7a", - "2b9d6988.d84836" - ] - ] - }, - { - "id": "2b009bd7.c07004", - "type": "ui_text", - "z": "baa1e3d9.cb29d", - "group": "70de8209.68416c", - "order": 3, - "width": 10, - "height": 2, - "name": "imager", - "label": "Imager status:", - "format": "{{msg.payload.status}}", - "layout": "col-center", - "x": 770, - "y": 740, - "wires": [] - }, - { - "id": "c516d9ea.f7f6e", - "type": "ui_text", - "z": "baa1e3d9.cb29d", - "group": "70de8209.68416c", - "order": 1, - "width": 5, - "height": 1, - "name": "focus", - "label": "Focus status:", - "format": "{{msg.payload.status}}", - "layout": "col-center", - "x": 770, - "y": 700, - "wires": [] - }, - { - "id": "a46a1e7f.88a92", - "type": "ui_text", - "z": "baa1e3d9.cb29d", - "group": "70de8209.68416c", - "order": 2, - "width": 5, - "height": 1, - "name": "pump", - "label": "Pump status:", - "format": "{{msg.payload.status}}", - "layout": "col-center", - "x": 770, - "y": 660, - "wires": [] - }, - { - "id": "bb628f8d.98f108", - "type": "link in", - "z": "baa1e3d9.cb29d", - "name": "Status for fluidic module", - "links": [ - "58f2e0f.4e8b12" - ], - "x": 175, - "y": 800, - "wires": [ - [ - "999065ca.27edb8" - ] - ] - }, - { - "id": "307c851e.fb0f7a", - "type": "switch", - "z": "baa1e3d9.cb29d", - "name": "Imaging state", - "property": "payload", - "propertyType": "msg", - "rules": [ - { - "t": "jsonata_exp", - "v": "$contains(msg.payload.status, \"jpg\")\t", - "vt": "jsonata" - }, - { - "t": "else" - } - ], - "checkall": "false", - "repair": false, - "outputs": 2, - "x": 540, - "y": 880, - "wires": [ - [ - "db8e3dde.44efb8" - ], - [ - "6742014e.1bb238" - ] - ] - }, - { - "id": "db8e3dde.44efb8", - "type": "function", - "z": "baa1e3d9.cb29d", - "name": "img_counter", - "func": "img_counter=flow.get('img_counter')\nif (img_counter === undefined || img_counter === \"\"){\n img_counter = 0\n}\nimg_counter=img_counter+1\nflow.set('img_counter',img_counter)\nmsg.payload = img_counter\nmsg.payload = (100 * img_counter/global.get('nb_frame')).toFixed(2)\nreturn msg;", - "outputs": 1, - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 770, - "y": 860, - "wires": [ - [ - "1a2e721a.f5e876" - ] - ] - }, - { - "id": "59164d65.e7993c", - "type": "ui_toast", - "z": "baa1e3d9.cb29d", - "position": "top right", - "displayTime": "5", - "highlight": "", - "sendall": true, - "outputs": 0, - "ok": "OK", - "cancel": "", - "raw": false, - "topic": "", - "name": "", - "x": 1270, - "y": 900, - "wires": [] - }, - { - "id": "8c7348aa.1962e8", - "type": "template", - "z": "baa1e3d9.cb29d", - "name": "Create sentence", - "field": "payload", - "fieldType": "msg", - "format": "handlebars", - "syntax": "mustache", - "template": "The {{topic}} is {{payload.status}}", - "output": "str", - "x": 1050, - "y": 900, - "wires": [ - [ - "59164d65.e7993c" - ] - ] - }, - { - "id": "6742014e.1bb238", - "type": "change", - "z": "baa1e3d9.cb29d", - "name": "Remove high-level topic", - "rules": [ - { - "t": "change", - "p": "topic", - "pt": "msg", - "from": "status/", - "fromt": "str", - "to": "", - "tot": "str" - } - ], - "action": "", - "property": "", - "from": "", - "to": "", - "reg": false, - "x": 810, - "y": 900, - "wires": [ - [ - "8c7348aa.1962e8" - ] - ] - }, - { - "id": "1a2e721a.f5e876", - "type": "ui_gauge", - "z": "baa1e3d9.cb29d", - "name": "progress donut", - "group": "b5d61bc7.54fe48", - "order": 3, - "width": 6, - "height": 3, - "gtype": "donut", - "title": "", - "label": "%", - "format": "{{value}}", - "min": 0, - "max": "100", - "colors": [ - "#ffa83f", - "#e6ff02", - "#00dfe9" - ], - "seg1": "50", - "seg2": "75", - "x": 1260, - "y": 860, - "wires": [] - }, - { - "id": "9bd72495.a8a098", - "type": "ui_text", - "z": "baa1e3d9.cb29d", - "group": "4322c187.e73e5", - "order": 5, - "width": 5, - "height": 1, - "name": "Total imaged volume", - "label": "Total imaged volume", - "format": "{{msg.payload}}", - "layout": "col-center", - "x": 1200, - "y": 100, - "wires": [] - }, - { - "id": "99b11fe4.2795d", - "type": "function", - "z": "baa1e3d9.cb29d", - "name": "imaged volume calc", - "func": "camera = global.get(\"acq_camera\");\ncell = global.get(\"acq_celltype\");\nnb_frame = global.get(\"nb_frame\");\nprocess_pixel = global.get(\"process_pixel\");\n\nvar volume = 0\nif (camera == \"HQ Camera\"){\n volume = nb_frame * (process_pixel*4056*process_pixel*3040*cell/1000000000) / 1000;\n}\nelse if (camera == \"Camera v2.1\"){\n volume = nb_frame * (process_pixel*3280*process_pixel*2464*cell/1000000000) / 1000;\n}\nelse{\n msg.payload = \"The camera is not known to this system\";\n return msg;\n}\n\nglobal.set(\"acq_imaged_volume\", volume.toFixed(4))\n\nmsg.payload = volume.toFixed(2) + \" mL\"\nreturn msg;", - "outputs": 1, - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 960, - "y": 100, - "wires": [ - [ - "9bd72495.a8a098" - ] - ], - "info": "### Focusing\n##### focus.py `nb_step` `orientation`\n\n- `nb_step` : **integer** (from 1 to 100000) - number of step to perform by the stage (about 31um/step)\n- `orientation` : **string** - orientation of the focus either `up` or `down`\n\nExample:\n\n python3.7 $HOME/PlanktoScope/scripts/focus.py 650 up\n" - }, - { - "id": "8e16aa2f.e40398", - "type": "ui_text", - "z": "baa1e3d9.cb29d", - "group": "4322c187.e73e5", - "order": 7, - "width": 5, - "height": 1, - "name": "Total pumped volume", - "label": "Total pumped volume", - "format": "{{msg.payload}} mL", - "layout": "col-center", - "x": 1200, - "y": 260, - "wires": [] - }, - { - "id": "67091ac0.8f9f6c", - "type": "function", - "z": "baa1e3d9.cb29d", - "name": "acq_volume calc", - "func": "var imaging_pump_volume = global.get(\"imaging_pump_volume\");\nvar nb_frame = global.get(\"nb_frame\");\nvar acq_volume = 0\n\nacq_volume = (Number(nb_frame)*Number(imaging_pump_volume)).toFixed(2)\nglobal.set(\"acq_volume\", acq_volume)\n\nmsg.payload = acq_volume\nreturn msg;", - "outputs": 1, - "noerr": 0, - "initialize": "", - "finalize": "", - "x": 950, - "y": 260, - "wires": [ - [ - "8e16aa2f.e40398" - ] - ], - "info": "### Focusing\n##### focus.py `nb_step` `orientation`\n\n- `nb_step` : **integer** (from 1 to 100000) - number of step to perform by the stage (about 31um/step)\n- `orientation` : **string** - orientation of the focus either `up` or `down`\n\nExample:\n\n python3.7 $HOME/PlanktoScope/scripts/focus.py 650 up\n" - }, - { - "id": "2b9d6988.d84836", - "type": "switch", - "z": "baa1e3d9.cb29d", - "name": "", - "property": "payload", - "propertyType": "msg", - "rules": [ - { - "t": "hask", - "v": "status", - "vt": "str" - }, - { - "t": "hask", - "v": "camera_name", - "vt": "str" - } - ], - "checkall": "true", - "repair": false, - "outputs": 2, - "x": 650, - "y": 760, - "wires": [ - [ - "2b009bd7.c07004" - ], - [ - "3bbb756a.84190a" - ] - ] - }, - { - "id": "3bbb756a.84190a", - "type": "function", - "z": "baa1e3d9.cb29d", - "name": "set camera name", - "func": "global.set(\"acq_camera\", msg.payload.camera_name);\n\nmsg.payload = msg.payload.camera_name;\n\nreturn msg;", - "outputs": 1, - "noerr": 0, - "initialize": "", - "finalize": "", - "x": 810, - "y": 780, - "wires": [ - [ - "559a8085.1d6b9" - ] - ] - }, - { - "id": "559a8085.1d6b9", - "type": "link out", - "z": "baa1e3d9.cb29d", - "name": "Camera Name", - "links": [ - "30067f35.532f2", - "572a6daa.6004c4" - ], - "x": 965, - "y": 780, - "wires": [] - }, - { - "id": "49ea1123.ee1768", - "type": "ui_numeric", - "z": "baa1e3d9.cb29d", - "name": "sleep_before", - "label": "Delay to stabilize image (s)", - "tooltip": "Happens before every capture", - "group": "4322c187.e73e5", - "order": 4, - "width": 5, - "height": 1, - "wrap": false, - "passthru": true, - "topic": "sleep_before", - "topicType": "str", - "format": "{{value}}", - "min": "0.1", - "max": "5", - "step": "0.1", - "className": "", - "x": 670, - "y": 140, - "wires": [ - [ - "fb887036.12429" - ] - ] - }, - { - "id": "572a6daa.6004c4", - "type": "link in", - "z": "baa1e3d9.cb29d", - "name": "", - "links": [ - "559a8085.1d6b9" - ], - "x": 735, - "y": 60, - "wires": [ - [ - "99b11fe4.2795d" - ] - ] - }, - { - "id": "8032ea50.1b57f", - "type": "ui_template", - "z": "baa1e3d9.cb29d", - "group": "b5d61bc7.54fe48", - "name": "progress header", - "order": 1, - "width": 0, - "height": 0, - "format": "

Capture progress

", - "storeOutMessages": false, - "fwdInMessages": false, - "resendOnRefresh": false, - "templateScope": "local", - "x": 1270, - "y": 820, - "wires": [ - [] - ] - }, - { - "id": "a4abb1ae.2ae418", - "type": "subflow:1c24ad9c.bebec2", - "z": "baa1e3d9.cb29d", - "name": "", - "env": [], - "x": 890, - "y": 480, - "wires": [ - [] - ] - }, - { - "id": "4be09c97f86897d9", - "type": "function", - "z": "baa1e3d9.cb29d", - "name": "get nb_frame", - "func": "msg.payload = msg.payload.nb_frame;\nreturn msg;", - "outputs": 1, - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 330, - "y": 220, - "wires": [ - [ - "51b4d0df.d70a88" - ] - ] - }, - { - "id": "f573206abefa9518", - "type": "function", - "z": "baa1e3d9.cb29d", - "name": "get imaging_pump_volume", - "func": "msg.payload = msg.payload.imaging_pump_volume;\nreturn msg;", - "outputs": 1, - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 380, - "y": 260, - "wires": [ - [ - "0df8d1d86af6455a" - ] - ] - }, - { - "id": "f948151ab4031df4", - "type": "function", - "z": "baa1e3d9.cb29d", - "name": "get sleep_before", - "func": "msg.payload = msg.payload.sleep_before;\nreturn msg;", - "outputs": 1, - "timeout": "", - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 340, - "y": 140, - "wires": [ - [ - "49ea1123.ee1768" - ] - ] - }, - { - "id": "ad153212312f0347", - "type": "ui_ui_control", - "z": "baa1e3d9.cb29d", - "name": "onTab", - "events": "all", - "x": 310, - "y": 340, - "wires": [ - [ - "9b69ea945b587192" - ] - ] - }, - { - "id": "9b69ea945b587192", - "type": "function", - "z": "baa1e3d9.cb29d", - "name": "check tab", - "func": "if (msg.name == \"Fluidic Acquisition\"){\n return { \"topic\": \"imager/ image\" }\n}", - "outputs": 1, - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 460, - "y": 340, - "wires": [ - [ - "52ea7d01.711034" - ] - ], - "outputLabels": [ - "interface" - ] - }, - { - "id": "0df8d1d86af6455a", - "type": "ui_text_input", - "z": "baa1e3d9.cb29d", - "name": "imaging_pump_volume", - "label": "Pumped volume (mL)", - "tooltip": "between frames", - "group": "4322c187.e73e5", - "order": 3, - "width": 0, - "height": 0, - "passthru": true, - "mode": "number", - "delay": 300, - "topic": "imaging_pump_volume", - "sendOnBlur": true, - "className": "", - "topicType": "str", - "x": 630, - "y": 260, - "wires": [ - [ - "fb887036.12429", - "67091ac0.8f9f6c" - ] - ] - }, - { - "id": "37116281279b9b82", - "type": "ui_template", - "z": "baa1e3d9.cb29d", - "group": "4322c187.e73e5", - "name": "Start Acquisition", - "order": 12, - "width": "5", - "height": "1", - "format": "\n\n", - "storeOutMessages": false, - "fwdInMessages": false, - "resendOnRefresh": false, - "templateScope": "local", - "className": "", - "x": 420, - "y": 440, - "wires": [ - [ - "c9f510c0.7d1328" - ] - ] - }, - { - "id": "9d6abe67.6bb3d", - "type": "ui_button", - "z": "cb95299c.2817c8", - "name": "", - "group": "64903b47.4034e4", - "order": 1, - "width": 0, - "height": 0, - "passthru": false, - "label": "Home", - "tooltip": "", - "color": "", - "bgcolor": "", - "icon": "home", - "payload": "{\"tab\":\"Home\"}", - "payloadType": "json", - "topic": "", - "x": 430, - "y": 600, - "wires": [ - [ - "f0fb77cf.8f1c28" - ] - ] - }, - { - "id": "f0fb77cf.8f1c28", - "type": "ui_ui_control", - "z": "cb95299c.2817c8", - "name": "", - "events": "change", - "x": 740, - "y": 600, - "wires": [ - [] - ] - }, - { - "id": "8ec68b82.17e3d8", - "type": "ui_button", - "z": "cb95299c.2817c8", - "name": "Start segmentation", - "group": "abeb6dad.635a2", - "order": 10, - "width": 5, - "height": 1, - "passthru": false, - "label": "Start segmentation", - "tooltip": "", - "color": "", - "bgcolor": "", - "icon": "", - "payload": "{\"action\":\"segment\"}", - "payloadType": "json", - "topic": "segmenter/segment", - "x": 370, - "y": 460, - "wires": [ - [ - "33c28dc1.238002", - "c72a1064.1ec388" - ] - ] - }, - { - "id": "27be7971.b3fbce", - "type": "ui_button", - "z": "cb95299c.2817c8", - "d": true, - "name": "Stop segmentation", - "group": "abeb6dad.635a2", - "order": 12, - "width": 4, - "height": 1, - "passthru": true, - "label": "Stop segmentation", - "tooltip": "", - "color": "", - "bgcolor": "#AD1625", - "icon": "", - "payload": "{\"action\":\"stop\"}", - "payloadType": "json", - "topic": "segmenter/segment", - "x": 370, - "y": 520, - "wires": [ - [ - "16f3cef4.0acac9" - ] - ] - }, - { - "id": "16f3cef4.0acac9", - "type": "mqtt out", - "z": "cb95299c.2817c8", - "name": "", - "topic": "", - "qos": "", - "retain": "", - "broker": "8dc3722c.06efa8", - "x": 850, - "y": 520, - "wires": [] - }, - { - "id": "8f3788f6.ddcf98", - "type": "function", - "z": "cb95299c.2817c8", - "name": "obj_counter", - "func": "obj_counter = flow.get('obj_counter')\nobj_counter = obj_counter + 1\nflow.set('obj_counter', obj_counter)\nmsg.payload = obj_counter\nmsg.topic = \"object count\"\nreturn msg", - "outputs": 1, - "noerr": 0, - "initialize": "", - "finalize": "", - "x": 810, - "y": 800, - "wires": [ - [ - "fa3b7929.ac7da8", - "9d53dbe2.dbffe8" - ] - ] - }, - { - "id": "aa38dbbc.cf0a9", - "type": "switch", - "z": "cb95299c.2817c8", - "name": "Segmenter", - "property": "topic", - "propertyType": "msg", - "rules": [ - { - "t": "eq", - "v": "status/segmenter", - "vt": "str" - }, - { - "t": "eq", - "v": "status/segmenter/name", - "vt": "str" - }, - { - "t": "eq", - "v": "status/segmenter/object_id", - "vt": "str" - }, - { - "t": "eq", - "v": "status/segmenter/metric", - "vt": "str" - } - ], - "checkall": "true", - "repair": false, - "outputs": 4, - "x": 490, - "y": 740, - "wires": [ - [ - "b9a23b91.93638", - "6919465f.332e5" - ], - [ - "49af3d24.1799e4" - ], - [ - "8f3788f6.ddcf98" - ], - [] - ] - }, - { - "id": "9d53dbe2.dbffe8", - "type": "ui_chart", - "z": "cb95299c.2817c8", - "name": "counter graph", - "group": "46be9c86.dea684", - "order": 7, - "width": 10, - "height": 2, - "label": "", - "chartType": "horizontalBar", - "legend": "false", - "xformat": "HH:mm:ss", - "interpolate": "linear", - "nodata": "Objects count will be shown here once the segmentation is started", - "dot": false, - "ymin": "", - "ymax": "", - "removeOlder": 1, - "removeOlderPoints": "", - "removeOlderUnit": "3600", - "cutout": 0, - "useOneColor": true, - "useUTC": false, - "colors": [ - "#1f77b4", - "#aec7e8", - "#ff7f0e", - "#2ca02c", - "#98df8a", - "#d62728", - "#ff9896", - "#9467bd", - "#c5b0d5" - ], - "outputs": 1, - "x": 1340, - "y": 840, - "wires": [ - [] - ] - }, - { - "id": "a4f0f0d1.3aca88", - "type": "ui_toast", - "z": "cb95299c.2817c8", - "position": "top right", - "displayTime": "5", - "highlight": "", - "sendall": true, - "outputs": 0, - "ok": "OK", - "cancel": "", - "raw": false, - "topic": "", - "name": "", - "x": 1350, - "y": 680, - "wires": [] - }, - { - "id": "49af3d24.1799e4", - "type": "debug", - "z": "cb95299c.2817c8", - "name": "segmentation name", - "active": true, - "tosidebar": true, - "console": false, - "tostatus": false, - "complete": "true", - "targetType": "full", - "statusVal": "", - "statusType": "auto", - "x": 840, - "y": 760, - "wires": [] - }, - { - "id": "7088a5be.0c79a4", - "type": "template", - "z": "cb95299c.2817c8", - "name": "Create sentence", - "field": "payload", - "fieldType": "msg", - "format": "handlebars", - "syntax": "mustache", - "template": "The {{topic}} is {{payload.status}}", - "output": "str", - "x": 1100, - "y": 680, - "wires": [ - [ - "a4f0f0d1.3aca88" - ] - ] - }, - { - "id": "b9a23b91.93638", - "type": "change", - "z": "cb95299c.2817c8", - "name": "Remove high-level topic", - "rules": [ - { - "t": "change", - "p": "topic", - "pt": "msg", - "from": "status/", - "fromt": "str", - "to": "", - "tot": "str" - } - ], - "action": "", - "property": "", - "from": "", - "to": "", - "reg": false, - "x": 850, - "y": 680, - "wires": [ - [ - "7088a5be.0c79a4" - ] - ] - }, - { - "id": "6919465f.332e5", - "type": "ui_text", - "z": "cb95299c.2817c8", - "group": "46be9c86.dea684", - "order": 1, - "width": 10, - "height": 1, - "name": "segmenter", - "label": "Segmenter status:", - "format": "{{msg.payload.status}}", - "layout": "row-spread", - "x": 810, - "y": 720, - "wires": [] - }, - { - "id": "fa3b7929.ac7da8", - "type": "ui_text", - "z": "cb95299c.2817c8", - "group": "46be9c86.dea684", - "order": 5, - "width": 4, - "height": 1, - "name": "counter", + "value": "PlanktoScope v2.6", + "type": "str" + }, + { "label": "", - "format": "{{msg.payload}}", - "layout": "col-center", - "x": 1320, - "y": 800, - "wires": [] - }, - { - "id": "640ece83.88cab", - "type": "inject", - "z": "cb95299c.2817c8", - "name": "Init graphs", - "props": [ - { - "p": "payload" - }, - { - "p": "topic", - "vt": "str" - } - ], - "repeat": "", - "crontab": "", - "once": true, - "onceDelay": 0.1, - "topic": "object count", - "payload": "0", - "payloadType": "num", - "x": 810, - "y": 880, - "wires": [ - [ - "4f3f7c4a.cb21c4" - ] - ] - }, - { - "id": "25867454.a8e334", - "type": "link in", - "z": "cb95299c.2817c8", - "name": "Segmenter module status", - "links": [ - "dcf5bd45.16a8d" - ], - "x": 295, - "y": 740, - "wires": [ - [ - "aa38dbbc.cf0a9" - ] - ] - }, - { - "id": "c8749cbb.55254", - "type": "function", - "z": "cb95299c.2817c8", - "name": "set global", - "func": "global.set(msg.topic, msg.payload);", - "outputs": 1, - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 960, - "y": 380, - "wires": [ - [] - ] - }, - { - "id": "d43c3ed9.e6cb1", - "type": "ui_template", - "z": "cb95299c.2817c8", - "group": "46be9c86.dea684", - "name": "Object counts", - "order": 3, - "width": 0, - "height": 0, - "format": "

Object counts

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"outputs": 1, - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 620, - "y": 460, - "wires": [ - [ - "16f3cef4.0acac9" - ] - ] - }, - { - "id": "fa12f9f8.00cfa8", - "type": "subflow:1c24ad9c.bebec2", - "z": "cb95299c.2817c8", - "name": "", - "env": [], - "x": 430, - "y": 380, - "wires": [ - [ - "3b72d11c.86e9e6" - ] - ] - }, - { - "id": "3b72d11c.86e9e6", - "type": "function", - "z": "cb95299c.2817c8", - "name": "get process_id", - "func": "msg.payload = msg.payload.process_id;\nmsg.topic = \"process_id\";\nreturn msg;", - "outputs": 1, - "noerr": 0, - "initialize": "", - "finalize": "", - "x": 600, - "y": 380, - "wires": [ - [ - "56971109c8be3b54" - ] - ] - }, - { - "id": "3ea12061.ce62c", - "type": "ui_list", - "z": "cb95299c.2817c8", - "group": "abeb6dad.635a2", - "name": "", - "order": 9, - "width": 10, - "height": 11, - "lineType": "one", - "actionType": "check", - "allowHTML": false, - "outputs": 1, - "topic": "", - "x": 770, - "y": 140, - "wires": [ - [ - "cb3b87b5.63c4" - ] - ] - }, - { - "id": "8bd8fb2c.53fa4", - "type": "dir2files", - "z": "cb95299c.2817c8", - "name": "", - "dirname": "/home/pi/data/img/", - "pathRegex": "", - "isRecursive": true, - "findDir": true, - "isArray": true, - "x": 460, - "y": 140, - "wires": [ - [ - "ba2947.c854deb8" - ] - ] - }, - { - "id": "127d4ee.f8ad1b1", - "type": "ui_button", - "z": "cb95299c.2817c8", - "name": "Refresh", - "group": "abeb6dad.635a2", - "order": 8, - "width": 0, - "height": 0, - "passthru": false, - "label": "Update acquisition's folder list", - "tooltip": "Refresh the list of previous acquisitions", - "color": "", - "bgcolor": "", - "icon": "mi-find_replace", - "payload": "", - "payloadType": "date", - "topic": "update", - "x": 260, - "y": 140, - "wires": [ - [ - "8bd8fb2c.53fa4", - "56f845f5.e7c054" - ] - ] - }, - { - "id": "946ce9ee.092cf", - "type": "inject", - "z": "cb95299c.2817c8", - "name": "Init", - "props": [ - { - "p": "payload" - } - ], - "repeat": "", - "crontab": "", - "once": true, - "onceDelay": 0.1, - "topic": "", - "payload": "", - "payloadType": "date", - "x": 270, - "y": 100, - "wires": [ - [ - "8bd8fb2c.53fa4", - "56f845f5.e7c054" - ] - ] - }, - { - "id": "cb3b87b5.63c4", - "type": "function", - "z": "cb95299c.2817c8", - "name": "update segmentation_list", - "func": "var segmentation_list = flow.get('segmentation_list');\n\nif (segmentation_list === undefined || segmentation_list === \"\") {\n segmentation_list = []\n console.log(\"error\")\n}\n\npath = \"/home/pi/data/img/\" + msg.payload.title\n\nif (msg.payload.isChecked){\n if (segmentation_list.includes(path) === false){\n segmentation_list.push(path)\n }\n // Element already in list, don't push it more than once\n //segmentation_list.push(msg.payload[\"title\"])\n}\nelse {\n var pos = segmentation_list.indexOf(path)\n segmentation_list.splice(pos, 1)\n}\n\nflow.set('segmentation_list', segmentation_list)", - "outputs": 1, - "noerr": 0, - "initialize": "", - "finalize": "", - "x": 950, - "y": 140, - "wires": [ - [] - ] - }, - { - "id": "56f845f5.e7c054", - "type": "change", - "z": "cb95299c.2817c8", - "name": "Reset segmentation_list", - "rules": [ - { - "t": "set", - "p": "segmentation_list", - "pt": "flow", - "to": "[]", - "tot": "json" - } - ], - "action": "", - "property": "", - "from": "", - "to": "", - "reg": false, - "x": 510, - "y": 100, - "wires": [ - [] - ] - }, - { - "id": "7fc72364.8f038c", - "type": "ui_template", - "z": "cb95299c.2817c8", - "group": "abeb6dad.635a2", - "name": "Update message", - "order": 1, - "width": 10, - "height": 3, - "format": "
You can choose here in which folder(s) you want the segmentation script to run. A few details though:\n
The segmentation is run recursively in all folders. So if you select a top level folder, the segmentation will be run in all subfolders.\n
Also, you will be able to chose wether for force the segmentation for folders in which it has run already.
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\n Latest object segmented:
\n \"If\n
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\n\n
", - "storeOutMessages": true, - "fwdInMessages": true, - "resendOnRefresh": false, - "templateScope": "local", - "className": "", - "x": 400, - "y": 100, - "wires": [ - [] - ] - }, - { - "id": "4f02c726.de69b8", - "type": "ui_button", - "z": "9daf9e2b.019fc", - "name": "", - "group": "a7d64879.38298", - "order": 4, - "width": "6", - "height": 1, - "passthru": false, - "label": "Reboot", - "tooltip": "", - "color": "", - "bgcolor": "#AD1625", - "className": "", - "icon": "fa-repeat fa-2x", - "payload": "reboot", - "payloadType": "str", - "topic": "reboot", - "topicType": "str", - "x": 160, - "y": 240, - "wires": [ - [ - "611a8b1c.a829b4" - ] - ] - }, - { - "id": "611a8b1c.a829b4", - "type": "exec", - "z": "9daf9e2b.019fc", - "command": "sudo", - "addpay": "payload", - "append": "now", - "useSpawn": "false", - "timer": "2", - "winHide": false, - "oldrc": false, - "name": "sudo cmd now", - "x": 480, - "y": 280, - "wires": [ - [], - [], - [] - ] - }, - { - "id": "bc76c4d6.a7ad28", - "type": "ui_button", - "z": "9daf9e2b.019fc", - "name": "", - "group": "a7d64879.38298", - "order": 5, - "width": "6", - "height": 1, - "passthru": false, - "label": "Shutdown", - "tooltip": "", - "color": "", - "bgcolor": "#AD1625", - "className": "", - "icon": "fa-power-off fa-2x", - "payload": "shutdown", - "payloadType": "str", - "topic": "shutdown", - "topicType": "str", - "x": 160, - "y": 320, - "wires": [ - [ - "611a8b1c.a829b4" - ] - ] - }, - { - "id": "b81b990a.d4dca", - "type": "link in", - "z": "9daf9e2b.019fc", - "name": "Shutdown", - "links": [ - "e08cfcb8.2a67e8" - ], - "x": 195, - "y": 280, - "wires": [ - [ - "611a8b1c.a829b4" - ] - ] - }, - { - "id": "ea4fae012404854c", - "type": "ui_button", - "z": "9daf9e2b.019fc", - "name": "", - "group": "a7d64879.38298", - "order": 2, - "width": "6", - "height": 1, - "passthru": true, - "label": "Restart Hardware Controller", - "tooltip": "", - "color": "", - "bgcolor": "#AD1625", - "className": "", - "icon": "fa-refresh fa-2x", - "payload": "Restarting hardware controller...", - "payloadType": "str", - "topic": "", - "topicType": "str", - "x": 440, - "y": 420, - "wires": [ - [ - "c54d948575dbcff8", - "d10f3ffd98055447" - ] - ] - }, - { - "id": "438febd245a9f73c", - "type": "link in", - "z": "9daf9e2b.019fc", - "name": "Restart Hardware Controller", - "links": [ - "e41870d7.300eb8", - "3973b999ee7b3b1d" - ], - "x": 195, - "y": 420, - "wires": [ - [ - "ea4fae012404854c" - ] - ] - }, - { - "id": "c54d948575dbcff8", - "type": "exec", - "z": "9daf9e2b.019fc", - "command": "sudo systemctl restart planktoscope-org.device-backend.controller.service", - "addpay": false, - "append": "", - "useSpawn": "false", - "timer": "", - "winHide": false, - "oldrc": false, - "name": "Restart hardware controller", - "x": 780, - "y": 420, - "wires": [ - [], - [], - [] - ] - }, - { - "id": "e2e5ce0351a6cc11", - "type": "ui_button", - "z": "9daf9e2b.019fc", - "name": "", - "group": "a7d64879.38298", - "order": 3, - "width": "6", - "height": 1, - "passthru": true, - "label": "Restart Segmenter", - "tooltip": "", - "color": "", - "bgcolor": "#AD1625", - "className": "", - "icon": "fa-refresh fa-2x", - "payload": "Restarting segmenter...", - "payloadType": "str", - "topic": "", - "topicType": "str", - "x": 410, - "y": 500, - "wires": [ - [ - "2cdbadb65d0e1b20", - "9c1629488b02fdba" - ] - ] - }, - { - "id": "2cdbadb65d0e1b20", - "type": "exec", - "z": "9daf9e2b.019fc", - "command": "docker restart apps_ps_backend_proc-segmenter-server-1", - "addpay": false, - "append": "", - "useSpawn": "false", - "timer": "", - "winHide": false, - "oldrc": false, - "name": "Restart segmenter", - "x": 750, - "y": 500, - "wires": [ - [], - [], - [] - ] - }, - { - "id": "7b64209d734e4e2c", - "type": "ui_template", - "z": "9daf9e2b.019fc", - "group": "a7d64879.38298", - "name": "Logs", - "order": 1, - "width": "0", - "height": "0", - "format": "

\n The PlanktoScope software application consists of three components: a Node-RED dashboard which provides the user interface you're using; a Hardware Controller\n which executes commands sent from the Node-RED dashboard for hardware control and image acquisition; and a Segmenter which processes an acquired dataset of\n images and isolates objects from those images. Each component has its own independent log of messages, managed separately from the logs for the other components.\n

\n

\n All three components have live-updating logs which you can monitor. Additionally, the Hardware Controller and the Segmenter also save all of their log messages\n to files which you can browse and download. Those software components create a new log file each time they start, and the name of the log file includes the time\n in the PlanktoScope's clock when the software component started. However, if your PlanktoScope's clock is usually wrong, it makes the log files difficult to navigate.\n This will be fixed in a future version of the software.\n

\n

\n If you need to share your logs with other people (e.g. on Slack or GitHub), you should open the \"Downloadable Logs\" links, and then you can select one file or multiple\n log files for downloading as a zip archive.\n

\n", - "storeOutMessages": true, - "fwdInMessages": true, - "resendOnRefresh": true, - "templateScope": "local", - "className": "", - "x": 630, - "y": 180, - "wires": [ - [] - ] - }, - { - "id": "d10f3ffd98055447", - "type": "ui_toast", - "z": "9daf9e2b.019fc", - "position": "top right", - "displayTime": "3", - "highlight": "", - "sendall": true, - "outputs": 0, - "ok": "OK", - "cancel": "", - "raw": false, - "className": "", - "topic": "", - "name": "", - "x": 750, - "y": 380, - "wires": [] - }, - { - "id": "9c1629488b02fdba", - "type": "ui_toast", - "z": "9daf9e2b.019fc", - "position": "top right", - "displayTime": "3", - "highlight": "", - "sendall": true, - "outputs": 0, - "ok": "OK", - "cancel": "", - "raw": false, - "className": "", - "topic": "", - "name": "", - "x": 750, - "y": 460, - "wires": [] - }, - { - "id": "3910d662.fa1f7a", - "type": "exec", - "z": "1371dec5.76e671", - "command": "df -h | grep /dev/root | awk -F ' ' '{print $5}' | tr -d % | tr \"\\n$\" \"\\ \" | sed 's/,/./' | tr -d \" \"", - "addpay": false, - "append": "", - "useSpawn": "", - "timer": "", - "name": "Disk Usage", - "x": 330, - "y": 120, - "wires": [ - [ - "eaf74a43.fa27d" - ], - [], - [] - ] - }, - { - "id": "1cd5b4c0.46af9b", - "type": "inject", - "z": "1371dec5.76e671", - "name": "update: 5s", - "props": [ - { - "p": "payload" - }, - { - "p": "topic", - "vt": "str" - } - ], - "repeat": "5", - "crontab": "", - "once": false, - "onceDelay": "", - "topic": "", - "payload": "", - "payloadType": "date", - "x": 110, - "y": 160, - "wires": [ - [ - "3910d662.fa1f7a", - "aa2e4cd182dbc776", - "797675a937dc1629", - "f6f570b10c675854" - ] - ] - }, - { - "id": "569154a.b53182c", - "type": "inject", - "z": "1371dec5.76e671", - "name": "once", - "props": [ - { - "p": "payload" - } - ], - "repeat": "", - "crontab": "", - "once": true, - "onceDelay": "", - "topic": "", - "payload": "start", - "payloadType": "str", - "x": 130, - "y": 700, - "wires": [ - [ - "5883e629f5d546ed" - ] - ] - }, - { - "id": "4828d2f4.7c712c", - "type": "function", - "z": "1371dec5.76e671", - "name": "set global", - "func": "global.set(\"acq_instrument_id\",msg.payload);\n", - "outputs": 1, - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 580, - "y": 720, - "wires": [ - [] - ] - }, - { - "id": "e2f39a35.f57298", - "type": "subflow:1c24ad9c.bebec2", - "z": "1371dec5.76e671", - "name": "", - "env": [], - "x": 130, - "y": 640, - "wires": [ - [ - "9b64f397101c2762" - ] - ] - }, - { - "id": "3e64877a.9684b", - "type": "function", - "z": "1371dec5.76e671", - "name": "set global", - "func": "global.set(\"acq_software\", \"PlanktoScope \" + msg.payload);\n", - "outputs": 1, - "timeout": "", - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 820, - "y": 520, - "wires": [ - [] - ] - }, - { - "id": "bdc6718a.dd5d48", - "type": "ui_text", - "z": "1371dec5.76e671", - "group": "ce9e278.781eed8", - "order": 2, - "width": 0, - "height": 0, - "name": "", - "label": "Instrument Type", - "format": "{{msg.payload}}", - "layout": "row-spread", - "className": "", - "style": false, - "font": "", - "fontSize": "", - "color": "#000000", - "x": 600, - "y": 640, - "wires": [] - }, - { - "id": "a400a97e.e333a8", - "type": "ui_text", - "z": "1371dec5.76e671", - "group": "ce9e278.781eed8", - "order": 1, - "width": 0, - "height": 0, - "name": "", - "label": "Instrument Name", - "format": "{{msg.payload}}", - "layout": "row-spread", - "x": 610, - "y": 680, - "wires": [] - }, - { - "id": "8343fa69.49339", - "type": "ui_text", - "z": "1371dec5.76e671", - "group": "ce9e278.781eed8", - "order": 3, - "width": 0, - "height": 0, - "name": "", - "label": "Software Version", - "format": "{{msg.payload}}", - "layout": "row-spread", - "className": "", - "style": false, - "font": "", - "fontSize": "", - "color": "#000000", - "x": 850, - "y": 560, - "wires": [] - }, - { - "id": "f783aefd.c3bfd8", - "type": "ui_text", - "z": "1371dec5.76e671", - "group": "ce9e278.781eed8", - "order": 4, - "width": 0, - "height": 0, - "name": "", - "label": "Camera Name", - "format": "{{msg.payload}}", - "layout": "row-spread", - "x": 600, - "y": 760, - "wires": [] - }, - { - "id": "30067f35.532f2", - "type": "link in", - "z": "1371dec5.76e671", - "name": "Camera Name", - "links": [ - "559a8085.1d6b9" - ], - "x": 155, - "y": 760, - "wires": [ - [ - "f783aefd.c3bfd8" - ] - ] - }, - { - "id": "eaf74a43.fa27d", - "type": "switch", - "z": "1371dec5.76e671", - "name": "if disk > 90%", - "property": "payload", - "propertyType": "msg", - "rules": [ - { - "t": "gte", - "v": "90", - "vt": "num" - } - ], - "checkall": "true", - "repair": false, - "outputs": 1, - "x": 590, - "y": 120, - "wires": [ - [ - "6d09f428.930bcc" - ] - ] - }, - { - "id": "46d5e78b.15f998", - "type": "ui_toast", - "z": "1371dec5.76e671", - "position": "dialog", - "displayTime": "10", - "highlight": "", - "sendall": true, - "outputs": 1, - "ok": "OK", - "cancel": "", - "raw": false, - "topic": "", - "name": "", - "x": 1090, - "y": 120, - "wires": [ - [] - ] - }, - { - "id": "24df077a.cb252", - "type": "change", - "z": "1371dec5.76e671", - "name": "full disk msg", - "rules": [ - { - "t": "set", - "p": "payload", - "pt": "msg", - "to": "\"Your drive has reached 90% capacity, you should do a backup to an external drive and a purge.\"", - "tot": "str" - } - ], - "action": "", - "property": "", - "from": "", - "to": "", - "reg": false, - "x": 930, - "y": 120, - "wires": [ - [ - "46d5e78b.15f998" - ] - ] - }, - { - "id": "6d09f428.930bcc", - "type": "delay", - "z": "1371dec5.76e671", - "name": "", - "pauseType": "rate", - "timeout": "5", - "timeoutUnits": "seconds", - "rate": "1", - "nbRateUnits": "5", - "rateUnits": "minute", - "randomFirst": "1", - "randomLast": "5", - "randomUnits": "seconds", - "drop": true, - "allowrate": false, - "outputs": 1, - "x": 760, - "y": 120, - "wires": [ - [ - "24df077a.cb252" - ] - ] - }, - { - "id": "5883e629f5d546ed", - "type": "file in", - "z": "1371dec5.76e671", - "name": "Get machine name", - "filename": "/run/machine-name", - "filenameType": "str", - "format": "utf8", - "chunk": false, - "sendError": false, - "encoding": "none", - "allProps": false, - "x": 350, - "y": 700, - "wires": [ - [ - "a400a97e.e333a8", - "4828d2f4.7c712c" - ] - ] - }, - { - "id": "9b64f397101c2762", - "type": "change", - "z": "1371dec5.76e671", - "name": "Get acq_instrument", - "rules": [ - { - "t": "set", - "p": "payload", - "pt": "msg", - "to": "payload.acq_instrument", - "tot": "msg" - }, - { - "t": "set", - "p": "topic", - "pt": "msg", - "to": "acq_instrument", - "tot": "str" - } - ], - "action": "", - "property": "", - "from": "", - "to": "", - "reg": false, - "x": 350, - "y": 640, - "wires": [ - [ - "bdc6718a.dd5d48" - ] - ] - }, - { - "id": "99725e1437cc390b", - "type": "file in", - "z": "1371dec5.76e671", - "name": "Versioning File", - "filename": "/usr/share/planktoscope/installer-versioning.yml", - "filenameType": "str", - "format": "utf8", - "chunk": false, - "sendError": false, - "encoding": "none", - "allProps": false, - "x": 240, - "y": 540, - "wires": [ - [ - "f4e21e28bd903f6d" - ] - ], - "info": "# PlanktoScope Help\nThis Node will read the content of the file named **config.txt** containing all the input placeholders.\n" - }, - { - "id": "6a0fa173874c3ddd", - "type": "inject", - "z": "1371dec5.76e671", - "name": "once", - "props": [ - { - "p": "payload" - } - ], - "repeat": "", - "crontab": "", - "once": true, - "onceDelay": "", - "topic": "", - "payload": "start", - "payloadType": "str", - "x": 90, - "y": 540, - "wires": [ - [ - "99725e1437cc390b" - ] - ] - }, - { - "id": "f4e21e28bd903f6d", - "type": "yaml", - "z": "1371dec5.76e671", - "property": "payload", - "name": "", - "x": 390, - "y": 540, - "wires": [ - [ - "d6264e3e29b68c6e", - "aa84b912c996c69e", - "fba22dc2c16b3ec8" - ] - ] - }, - { - "id": "d6264e3e29b68c6e", - "type": "change", - "z": "1371dec5.76e671", - "name": "Get version", - "rules": [ - { - "t": "set", - "p": "payload", - "pt": "msg", - "to": "payload.version", - "tot": "msg" - } - ], - "action": "", - "property": "", - "from": "", - "to": "", - "reg": false, - "x": 590, - "y": 540, - "wires": [ - [ - "3e64877a.9684b", - "8343fa69.49339" - ] - ] - }, - { - "id": "aa84b912c996c69e", - "type": "change", - "z": "1371dec5.76e671", - "name": "Get repo", - "rules": [ - { - "t": "set", - "p": "payload", - "pt": "msg", - "to": "payload.repo", - "tot": "msg" - } - ], - "action": "", - "property": "", - "from": "", - "to": "", - "reg": false, - "x": 580, - "y": 500, - "wires": [ - [ - "fd55e7a43d9bdbbb" - ] - ] - }, - { - "id": "fd55e7a43d9bdbbb", - "type": "function", - "z": "1371dec5.76e671", - "name": "set global", - "func": "global.set(\"process_source\", msg.payload);\n", - "outputs": 1, - "timeout": "", - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 820, - "y": 480, - "wires": [ - [] - ] - }, - { - "id": "fba22dc2c16b3ec8", - "type": "change", - "z": "1371dec5.76e671", - "name": "Get commit", - "rules": [ - { - "t": "set", - "p": "payload", - "pt": "msg", - "to": "payload.commit", - "tot": "msg" - } - ], - "action": "", - "property": "", - "from": "", - "to": "", - "reg": false, - "x": 590, - "y": 580, - "wires": [ - [ - "2ddc75a4ac38a17f" - ] - ] - }, - { - "id": "2ddc75a4ac38a17f", - "type": "function", - "z": "1371dec5.76e671", - "name": "set global", - "func": "global.set(\"process_commit\", msg.payload);\n", - "outputs": 1, - "timeout": "", - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 820, - "y": 600, - "wires": [ - [] - ] - }, - { - "id": "797675a937dc1629", - "type": "ui_template", - "z": "1371dec5.76e671", - "group": "3da7da8f.179606", - "name": "Metrics panel", - "order": 2, - "width": "0", - "height": "0", - "format": "
\n

\n The instrument's system time is different from your web browser's time by {{drift}}.\n As a result, timestamps in your datasets will be incorrect.\n Additionally, system metrics will not be recorded or shown correctly.\n Additionally, you will see incorrectly-aligned graphs in the metrics below.\n

\n

Please change the instrument's system time or your web browser's time to accurate values.

\n

\n \n

\n
\n\n
\n

Loading system metrics, please wait...

\n
\n\n
\n \n
\n\n\n", - "storeOutMessages": true, - "fwdInMessages": true, - "resendOnRefresh": false, - "templateScope": "local", - "className": "", - "x": 330, - "y": 280, - "wires": [ - [] - ] - }, - { - "id": "aa2e4cd182dbc776", - "type": "function", - "z": "1371dec5.76e671", - "name": "Get system time", - "func": "var date = new Date();\ndate.setSeconds(0, 0);\nmsg.payload = (\n date.toISOString().replace('T', ' ').replace(/:\\d+\\.\\d+Z/,' UTC')\n);\nreturn msg", - "outputs": 1, - "timeout": "", - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 340, - "y": 240, - "wires": [ - [ - "7c9ee522f6dbd3b0" - ] - ] - }, - { - "id": "7c9ee522f6dbd3b0", - "type": "ui_text", - "z": "1371dec5.76e671", - "group": "ce9e278.781eed8", - "order": 5, - "width": 0, - "height": 0, - "name": "", - "label": "System Time", - "format": "{{msg.payload}}", - "layout": "row-spread", - "className": "", - "style": false, - "font": "", - "fontSize": "", - "color": "#000000", - "x": 590, - "y": 240, - "wires": [] - }, - { - "id": "6dc9862f2eebe935", - "type": "http in", - "z": "1371dec5.76e671", - "name": "POST /api/system-time", - "url": "/api/system-time", - "method": "post", - "upload": false, - "swaggerDoc": "", - "x": 120, - "y": 360, - "wires": [ - [ - "a7994a561866dc94", - "dea222e9a6553cac" - ] - ] - }, - { - "id": "1c4113d4c933fd4b", - "type": "ui_toast", - "z": "1371dec5.76e671", - "position": "top right", - "displayTime": "3", - "highlight": "", - "sendall": true, - "outputs": 0, - "ok": "OK", - "cancel": "", - "raw": false, - "className": "", - "topic": "Setting system time", - "name": "", - "x": 610, - "y": 340, - "wires": [] - }, - { - "id": "a7994a561866dc94", - "type": "function", - "z": "1371dec5.76e671", - "name": "Get system time", - "func": "var date = new Date(msg.payload.timestamp);\nmsg.payload = (\n date.toISOString().replace('T', ' ').replace(/:\\d+\\.\\d+Z/,' UTC')\n);\nreturn msg", - "outputs": 1, - "timeout": "", - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 340, - "y": 340, - "wires": [ - [ - "1c4113d4c933fd4b", - "423659c62bae0524" - ] - ] - }, - { - "id": "814ce40bfc413777", - "type": "exec", - "z": "1371dec5.76e671", - "command": "sudo date -s", - "addpay": "payload", - "append": "", - "useSpawn": "", - "timer": "", - "winHide": false, - "name": "Set system time", - "x": 600, - "y": 380, - "wires": [ - [], - [], - [] - ] - }, - { - "id": "dea222e9a6553cac", - "type": "function", - "z": "1371dec5.76e671", - "name": "Prepare timestamp", - "func": "msg.payload = ('@' + msg.payload.timestamp).slice(0, -3);\nreturn msg;", - "outputs": 1, - "timeout": "", - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 350, - "y": 380, - "wires": [ - [ - "814ce40bfc413777" - ] - ] - }, - { - "id": "f6f570b10c675854", - "type": "ui_template", - "z": "1371dec5.76e671", - "group": "ce9e278.781eed8", - "name": "Browser time", - "order": 6, - "width": "6", - "height": "1", - "format": "
\n

Browser Time

\n

{{time}}

\n
\n\n", - "storeOutMessages": true, - "fwdInMessages": true, - "resendOnRefresh": false, - "templateScope": "local", - "className": "", - "x": 330, - "y": 200, - "wires": [ - [] - ] - }, - { - "id": "3822b843fda94733", - "type": "http in", - "z": "1371dec5.76e671", - "name": "GET /api/system-time", - "url": "/api/system-time", - "method": "get", - "upload": false, - "swaggerDoc": "", - "x": 120, - "y": 420, - "wires": [ - [ - "5b0a65d3fe187424" - ] - ] - }, - { - "id": "5b0a65d3fe187424", - "type": "function", - "z": "1371dec5.76e671", - "name": "Get system time", - "func": "var date = new Date();\nmsg.payload = {'timestamp': date.getTime()};\nreturn msg", - "outputs": 1, - "timeout": "", - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 340, - "y": 420, - "wires": [ - [ - "312a15407574b38e" - ] - ] - }, - { - "id": "423659c62bae0524", - "type": "http response", - "z": "1371dec5.76e671", - "name": "Send POST response", - "statusCode": "", - "headers": {}, - "x": 620, - "y": 300, - "wires": [] - }, - { - "id": "312a15407574b38e", - "type": "http response", - "z": "1371dec5.76e671", - "name": "Send GET response", - "statusCode": "", - "headers": { - "Content-Type": "application/json; charset=UTF-8" - }, - "x": 620, - "y": 420, - "wires": [] - }, - { - "id": "1fdf77b5.24e4e", - "type": "mqtt in", - "z": "9a22e67a.378818", - "name": "", - "topic": "status/#", - "qos": "0", - "datatype": "json", - "broker": "8dc3722c.06efa8", - "nl": false, - "rap": false, - "inputs": 0, - "x": 290, - "y": 340, - "wires": [ - [ - "fa73983d.318188" - ] - ] - }, - { - "id": "4a1e9e3e.27506", - "type": "switch", - "z": "9a22e67a.378818", - "name": "Filter segmenter out", - "property": "topic", - "propertyType": "msg", - "rules": [ - { - "t": "else" - }, - { - "t": "cont", - "v": "status/segmenter", - "vt": "str" - } - ], - "checkall": "true", - "repair": false, - "outputs": 2, - "x": 620, - "y": 340, - "wires": [ - [ - "58f2e0f.4e8b12" - ], - [ - "dcf5bd45.16a8d" - ] - ] - }, - { - "id": "fa73983d.318188", - "type": "json", - "z": "9a22e67a.378818", - "name": "", - "property": "payload", - "action": "obj", - "pretty": true, - "x": 430, - "y": 340, - "wires": [ - [ - "4a1e9e3e.27506" - ] - ] - }, - { - "id": "58f2e0f.4e8b12", - "type": "link out", - "z": "9a22e67a.378818", - "name": "Fluidic module status", - "links": [ - "bb628f8d.98f108" - ], - "x": 795, - "y": 320, - "wires": [] - }, - { - "id": "dcf5bd45.16a8d", - "type": "link out", - "z": "9a22e67a.378818", - "name": "Segmenter module status", - "links": [ - "25867454.a8e334" - ], - "x": 795, - "y": 360, - "wires": [] - }, - { - "id": "e41870d7.300eb8", - "type": "link out", - "z": "1eaf21c8.f7a21e", - "name": "Stepper config change", - "mode": "link", - "links": [ - "438febd245a9f73c" - ], - "x": 1495, - "y": 380, - "wires": [] - }, - { - "id": "2068e7f.f4efb18", - "type": "delay", - "z": "1eaf21c8.f7a21e", - "name": "", - "pauseType": "delay", - "timeout": "1", - "timeoutUnits": "seconds", - "rate": "1", - "nbRateUnits": "1", - "rateUnits": "second", - "randomFirst": "1", - "randomLast": "5", - "randomUnits": "seconds", - "drop": false, - "outputs": 1, - "x": 1180, - "y": 380, - "wires": [ - [ - "e41870d7.300eb8" - ] - ] - }, - { - "id": "8e3b3d3c.955148", - "type": "subflow:4ed26b8b.253504", - "z": "1eaf21c8.f7a21e", - "name": "", - "env": [], - "x": 1220, - "y": 420, - "wires": [] - }, - { - "id": "54ba7f16.709ad8", - "type": "change", - "z": "1eaf21c8.f7a21e", - "name": "Get pump_steps_per_ml", - "rules": [ - { - "t": "set", - "p": "payload", - "pt": "msg", - "to": "payload.pump_steps_per_ml", - "tot": "msg" - } - ], - "action": "", - "property": "", - "from": "", - "to": "", - "reg": false, - "x": 670, - "y": 400, - "wires": [ - [ - "ee58b91c.396108" - ] - ] - }, - { - "id": "ee58b91c.396108", - "type": "ui_text_input", - "z": "1eaf21c8.f7a21e", - "name": "pump_steps_per_ml", - "label": "Pump: steps per mL", - "tooltip": "", - "group": "6be36295.0ab324", - "order": 6, - "width": 0, - "height": 0, - "passthru": false, - "mode": "number", - "delay": "2000", - "topic": "pump_steps_per_ml", - "sendOnBlur": true, - "className": "", - "topicType": "str", - "x": 940, - "y": 400, - "wires": [ - [ - "2068e7f.f4efb18", - "8e3b3d3c.955148" - ] - ] - }, - { - "id": "7534dfd9.8cf3e8", - "type": "ui_template", - "z": "1eaf21c8.f7a21e", - "group": "6be36295.0ab324", - "name": "Information", - "order": 1, - "width": "8", - "height": "3", - "format": "
\n

\n Changing one of these values will cause the Python hardware controller to restart, to reload the new hardware configuration.\n

\n

\n Warning: selecting a hardware version from the dropdown menu below will also overwrite all of your hardware settings, including your camera white balance settings.\n

\n

\n If you are not sure, you probably should not be touching anything here!\n

\n
\n", - "storeOutMessages": true, - "fwdInMessages": true, - "resendOnRefresh": true, - "templateScope": "local", - "className": "", - "x": 610, - "y": 40, - "wires": [ - [] - ] - }, - { - "id": "a7e5c7f4.644678", - "type": "ui_dropdown", - "z": "1eaf21c8.f7a21e", - "name": "", - "label": "Hardware version", - "tooltip": "", - "place": "Select option", - "group": "6be36295.0ab324", - "order": 2, - "width": 0, - "height": 0, - "passthru": false, - "multiple": false, - "options": [ - { - "label": "", - "value": "PlanktoScope v2.1", - "type": "str" - }, - { - "label": "", - "value": "PlanktoScope v2.3", - "type": "str" - }, - { - "label": "", - "value": "PlanktoScope v2.5", - "type": "str" - }, - { - "label": "", - "value": "PlanktoScope v2.6", - "type": "str" - }, - { - "label": "", - "value": "PlanktoScope v3.0", - "type": "str" - } - ], - "payload": "", - "topic": "acq_instrument", - "topicType": "str", - "className": "", - "x": 670, - "y": 160, - "wires": [ - [ - "08d177136bd18281", - "56dd3f82c45717f0" - ] - ] - }, - { - "id": "1cfadc66.3cde8c", - "type": "subflow:1c24ad9c.bebec2", - "z": "1eaf21c8.f7a21e", - "name": "", - "env": [], - "x": 510, - "y": 300, - "wires": [ - [] - ] - }, - { - "id": "3e2c5c1c.4c57b4", - "type": "function", - "z": "1eaf21c8.f7a21e", - "name": "Save global", - "func": "global.set(msg.topic,msg.payload);\nreturn msg;", - "outputs": 1, - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 350, - "y": 300, - "wires": [ - [ - "1cfadc66.3cde8c" - ] - ] - }, - { - "id": "427c312.fc5e65", - "type": "subflow:1c24ad9c.bebec2", - "z": "1eaf21c8.f7a21e", - "name": "", - "env": [], - "x": 170, - "y": 140, - "wires": [ - [ - "c00c6732b9f36adb" - ] - ] - }, - { - "id": "c67c305004f87e39", - "type": "change", - "z": "1eaf21c8.f7a21e", - "name": "Get process_pixel_fixed", - "rules": [ - { - "t": "set", - "p": "payload", - "pt": "msg", - "to": "payload.process_pixel_fixed", - "tot": "msg" - } - ], - "action": "", - "property": "", - "from": "", - "to": "", - "reg": false, - "x": 670, - "y": 480, - "wires": [ - [ - "244ca5dd62df2bcd" - ] - ] - }, - { - "id": "244ca5dd62df2bcd", - "type": "ui_text_input", - "z": "1eaf21c8.f7a21e", - "name": "process_pixel_fixed", - "label": "Pixel size calibration: um per pixel", - "tooltip": "Object size in µm / pixel. 0 will remove this calibration.", - "group": "6be36295.0ab324", - "order": 8, - "width": 0, - "height": 0, - "passthru": true, - "mode": "number", - "delay": "1000", - "topic": "process_pixel_fixed", - "sendOnBlur": true, - "className": "", - "topicType": "str", - "x": 940, - "y": 480, - "wires": [ - [ - "8e3b3d3c.955148", - "f9b47f4b1da15778" - ] - ] - }, - { - "id": "f9b47f4b1da15778", - "type": "function", - "z": "1eaf21c8.f7a21e", - "name": "Set or remove if null", - "func": "if (msg.payload == 0){\n global.set(msg.topic,undefined)\n}\nelse {\n global.set(msg.topic,msg.payload);\n}\n\nreturn msg", - "outputs": 1, - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 1220, - "y": 480, - "wires": [ - [ - "5d5ad36d2c50dcc2" - ] - ] - }, - { - "id": "5d5ad36d2c50dcc2", - "type": "link out", - "z": "1eaf21c8.f7a21e", - "name": "Process_pixel calibration", - "links": [], - "x": 1495, - "y": 500, - "wires": [] - }, - { - "id": "6146ba22df928516", - "type": "ui_dropdown", - "z": "1eaf21c8.f7a21e", - "name": "acq_fnumber_objective", - "label": "M12 Lens", - "tooltip": "", - "place": "Select option", - "group": "6be36295.0ab324", - "order": 7, - "width": 0, - "height": 0, - "passthru": true, - "multiple": false, - "options": [ - { - "label": "f 25mm 1/2\" 5MP IR", - "value": 25, - "type": "num" - }, - { - "label": "f 16mm 1/2.5\" 5MP IR", - "value": 16, - "type": "num" - }, - { - "label": "f 12mm 1/2.5\" 5MP IR", - "value": 12, - "type": "num" - }, - { - "label": "f 8mm 1/2.5\" 5MP IR", - "value": 8, - "type": "num" - }, - { - "label": "f 6mm 1/2.5\" 5MP IR", - "value": 6, - "type": "num" - } - ], - "payload": "", - "topic": "acq_fnumber_objective", - "topicType": "str", - "x": 930, - "y": 520, - "wires": [ - [ - "a6983d3232b570a7", - "8e3b3d3c.955148" - ] - ] - }, - { - "id": "a6983d3232b570a7", - "type": "change", - "z": "1eaf21c8.f7a21e", - "name": "", - "rules": [ - { - "t": "set", - "p": "acq_fnumber_objective", - "pt": "global", - "to": "payload", - "tot": "msg" - } - ], - "action": "", - "property": "", - "from": "", - "to": "", - "reg": false, - "x": 1260, - "y": 520, - "wires": [ - [ - "5d5ad36d2c50dcc2" - ] - ] - }, - { - "id": "11955bbeefc29ab4", - "type": "change", - "z": "1eaf21c8.f7a21e", - "name": "Get acq_fnumber_objective", - "rules": [ - { - "t": "set", - "p": "payload", - "pt": "msg", - "to": "payload.acq_fnumber_objective", - "tot": "msg" - }, - { - "t": "set", - "p": "topic", - "pt": "msg", - "to": "acq_fnumber_objective", - "tot": "str" - } - ], - "action": "", - "property": "", - "from": "", - "to": "", - "reg": false, - "x": 680, - "y": 520, - "wires": [ - [ - "6146ba22df928516" - ] - ] - }, - { - "id": "d276ce894f483bcf", - "type": "ui_toast", - "z": "1eaf21c8.f7a21e", - "position": "top right", - "displayTime": "3", - "highlight": "", - "sendall": true, - "outputs": 0, - "ok": "OK", - "cancel": "", - "raw": false, - "className": "", - "topic": "Resetting hardware configuration to version-specific default", - "name": "", - "x": 370, - "y": 260, - "wires": [] - }, - { - "id": "68703ef63da2f081", - "type": "change", - "z": "1eaf21c8.f7a21e", - "name": "Choose default hardware config", - "rules": [ - { - "t": "set", - "p": "payload", - "pt": "msg", - "to": "$join([\"/home/pi/PlanktoScope/device-backend/default-configs/\", $substringAfter(msg.payload, \"PlanktoScope \"), \".hardware.json\"])", - "tot": "jsonata" - } - ], - "action": "", - "property": "", - "from": "", - "to": "", - "reg": false, - "x": 410, - "y": 220, - "wires": [ - [ - "e3ba6ac89221b17b" - ] - ] - }, - { - "id": "e3ba6ac89221b17b", - "type": "exec", - "z": "1eaf21c8.f7a21e", - "command": "cp", - "addpay": "payload", - "append": "/home/pi/PlanktoScope/hardware.json", - "useSpawn": "false", - "timer": "", - "winHide": false, - "oldrc": false, - "name": "Copy default hardware config", - "x": 700, - "y": 220, - "wires": [ - [ - "97e582080deae888" - ], - [], - [] - ] - }, - { - "id": "97e582080deae888", - "type": "delay", - "z": "1eaf21c8.f7a21e", - "name": "", - "pauseType": "delay", - "timeout": "500", - "timeoutUnits": "milliseconds", - "rate": "1", - "nbRateUnits": "1", - "rateUnits": "second", - "randomFirst": "1", - "randomLast": "5", - "randomUnits": "seconds", - "drop": false, - "allowrate": false, - "outputs": 1, - "x": 930, - "y": 220, - "wires": [ - [ - "3973b999ee7b3b1d" - ] - ] - }, - { - "id": "3973b999ee7b3b1d", - "type": "link out", - "z": "1eaf21c8.f7a21e", - "name": "Reload hardware config", - "mode": "link", - "links": [ - "438febd245a9f73c", - "4ebc0345e63a78e9", - "5984b086eddc9311", - "a2f2a4c7cbae4446" - ], - "x": 1095, - "y": 220, - "wires": [] - }, - { - "id": "3bcaf757cbc77fbe", - "type": "subflow:b7861ce703215a01", - "z": "1eaf21c8.f7a21e", - "name": "", - "x": 380, - "y": 440, - "wires": [ - [ - "54ba7f16.709ad8", - "c67c305004f87e39", - "11955bbeefc29ab4" - ] - ] - }, - { - "id": "862235d10aae5b83", - "type": "inject", - "z": "1eaf21c8.f7a21e", - "name": "Once", - "props": [], - "repeat": "", - "crontab": "", - "once": true, - "onceDelay": 0.1, - "topic": "", - "x": 170, - "y": 460, - "wires": [ - [ - "3bcaf757cbc77fbe" - ] - ] - }, - { - "id": "c00c6732b9f36adb", - "type": "change", - "z": "1eaf21c8.f7a21e", - "name": "Get acq_instrument", - "rules": [ - { - "t": "set", - "p": "payload", - "pt": "msg", - "to": "payload.acq_instrument", - "tot": "msg" - }, - { - "t": "set", - "p": "topic", - "pt": "msg", - "to": "acq_instrument", - "tot": "str" - } - ], - "action": "", - "property": "", - "from": "", - "to": "", - "reg": false, - "x": 370, - "y": 140, - "wires": [ - [ - "a7e5c7f4.644678", - "56dd3f82c45717f0" - ] - ] - }, - { - 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"exec", + "z": "1eaf21c8.f7a21e", + "command": "cp", + "addpay": "payload", + "append": "/home/pi/PlanktoScope/hardware.json", + "useSpawn": "false", + "timer": "", + "winHide": false, + "oldrc": false, + "name": "Copy default hardware config", + "x": 700, + "y": 220, + "wires": [["97e582080deae888"], [], []] + }, + { + "id": "97e582080deae888", + "type": "delay", + "z": "1eaf21c8.f7a21e", + "name": "", + "pauseType": "delay", + "timeout": "500", + "timeoutUnits": "milliseconds", + "rate": "1", + "nbRateUnits": "1", + "rateUnits": "second", + "randomFirst": "1", + "randomLast": "5", + "randomUnits": "seconds", + "drop": false, + "allowrate": false, + "outputs": 1, + "x": 930, + "y": 220, + "wires": [["3973b999ee7b3b1d"]] + }, + { + "id": "3973b999ee7b3b1d", + "type": "link out", + "z": "1eaf21c8.f7a21e", + "name": "Reload hardware config", + "mode": "link", + "links": [ + "438febd245a9f73c", + "4ebc0345e63a78e9", + "5984b086eddc9311", + "a2f2a4c7cbae4446" + ], + "x": 1095, + "y": 220, 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Sonny Piers Date: Wed, 21 May 2025 11:07:44 +0200 Subject: [PATCH 2/3] f --- .../node-red-dashboard/adafruithat/flows.json | 16876 +++++++++------- .../planktoscopehat/flows.json | 16209 ++++++++------- 2 files changed, 17815 insertions(+), 15270 deletions(-) diff --git a/software/node-red-dashboard/adafruithat/flows.json b/software/node-red-dashboard/adafruithat/flows.json index f7ea326ce..2271db36d 100644 --- a/software/node-red-dashboard/adafruithat/flows.json +++ b/software/node-red-dashboard/adafruithat/flows.json @@ -1,7811 +1,9099 @@ [ - { - "id": "eaae323a.31b3", - "type": "tab", - "label": "Home", - "disabled": false, - "info": "" - }, - { - "id": "b771c342.49603", - "type": "tab", - "label": "Sample", - "disabled": false, - "info": "" - }, - { - "id": "bccd1f23.87219", - "type": "tab", - "label": "Optic Configuration", - "disabled": false, - "info": "" - }, - { - "id": "baa1e3d9.cb29d", - "type": "tab", - "label": "Fluidic Acquisition", - "disabled": false, - "info": "" - }, 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"Home", + "disabled": false, + "info": "" + }, + { + "id": "b771c342.49603", + "type": "tab", + "label": "Sample", + "disabled": false, + "info": "" + }, + { + "id": "bccd1f23.87219", + "type": "tab", + "label": "Optic Configuration", + "disabled": false, + "info": "" + }, + { + "id": "baa1e3d9.cb29d", + "type": "tab", + "label": "Fluidic Acquisition", + "disabled": false, + "info": "" + }, + { + "id": "cb95299c.2817c8", + "type": "tab", + "label": "Segmentation", + "disabled": false, + "info": "" + }, + { + "id": "c1660bc.e7ff7f8", + "type": "tab", + "label": "Gallery", + "disabled": false, + "info": "" + }, + { + "id": "9daf9e2b.019fc", + "type": "tab", + "label": "Administration", + "disabled": false, + "info": "" + }, + { + "id": "1371dec5.76e671", + "type": "tab", + "label": "System Monitoring", + "disabled": false, + "info": "" + }, + { + "id": "9a22e67a.378818", + "type": "tab", + "label": "MQTT Receive", + "disabled": false, + "info": "" + }, + { + "id": "1eaf21c8.f7a21e", + 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UI,Roboto,Oxygen-Sans,Ubuntu,Cantarell,Helvetica Neue,sans-serif", + "edited": false, + "reset": false + }, + "darkTheme": { + "default": "#097479", + "baseColor": "#097479", + "baseFont": "-apple-system,BlinkMacSystemFont,Segoe UI,Roboto,Oxygen-Sans,Ubuntu,Cantarell,Helvetica Neue,sans-serif", + "edited": true, + "reset": false + }, + "customTheme": { + "name": "Untitled Theme 1", + "default": "#4B7930", + "baseColor": "#4B7930", + "baseFont": "-apple-system,BlinkMacSystemFont,Segoe UI,Roboto,Oxygen-Sans,Ubuntu,Cantarell,Helvetica Neue,sans-serif" + }, + "themeState": { + "base-color": { + "default": "#097479", + "value": "#097479", + "edited": true + }, + "page-titlebar-backgroundColor": { + "value": "#097479", + "edited": false + }, + "page-backgroundColor": { + "value": "#111111", + "edited": false + }, + "page-sidebar-backgroundColor": { + "value": "#333333", + "edited": false + }, + "group-textColor": { + "value": "#0eb8c0", + "edited": false + }, + "group-borderColor": { + "value": "#555555", + "edited": false + }, + "group-backgroundColor": { + "value": "#333333", + "edited": false + }, + "widget-textColor": { + "value": "#eeeeee", + "edited": false + }, + "widget-backgroundColor": { + "value": "#097479", + "edited": false + }, + "widget-borderColor": { + "value": "#333333", + "edited": false + }, + "base-font": { + "value": "-apple-system,BlinkMacSystemFont,Segoe UI,Roboto,Oxygen-Sans,Ubuntu,Cantarell,Helvetica Neue,sans-serif" + } + }, + "angularTheme": { + "primary": "indigo", + "accents": "blue", + "warn": "red", + "background": "grey", + "palette": "light" + } + }, + "site": { + "name": "PlanktoScope", + "hideToolbar": "false", + "allowSwipe": "false", + "lockMenu": "false", + "allowTempTheme": "true", + "dateFormat": "Y-MM-DD", + "sizes": { + "sx": 55, + "sy": 55, + "gx": 4, + "gy": 4, + "cx": 4, + "cy": 4, + "px": 4, + "py": 4 + } + } + }, + { + "id": "36739a35.7cce36", + "type": "ui_tab", + "name": "Gallery", + "icon": "fa-file-image-o", + "order": 6, + "disabled": false, + "hidden": false + }, + { + "id": "c0ebfc57.42527", + "type": "ui_group", + "name": "Group 1", + "tab": "36739a35.7cce36", + "order": 1, + "disp": false, + "width": "24", + "collapse": false + }, + { + "id": "737ec584.2eea2c", + "type": "ui_tab", + "name": "Sample", + "icon": "fa-eyedropper", + "order": 2, + "disabled": false, + "hidden": false + }, + { + "id": "6f97e7ae.270c48", + "type": "ui_group", + "name": "Group 1", + "tab": "3a6bb13f.c9703e", + "order": 1, + "disp": false, + "width": "4", + "collapse": false + }, + { + "id": "3e1ba03d.f01d8", + "type": "ui_group", + "name": "Sample Identification", + "tab": "737ec584.2eea2c", + "order": 1, + "disp": true, + "width": "10", + "collapse": false + }, + { + "id": "4e0cd5ea.17e59c", + "type": "ui_group", + "name": "Group 2", + "tab": "3a6bb13f.c9703e", + "order": 2, + "disp": false, + "width": "4", + "collapse": false + }, + { + "id": "ef590206.24f6", + "type": "ui_group", + "name": "Group 3", + "tab": "3a6bb13f.c9703e", + "order": 3, + "disp": false, + "width": "4", + "collapse": false + }, + { + "id": "ae8f6620.073358", + "type": "ui_group", + "name": "Group 4", + "tab": "3a6bb13f.c9703e", + "order": 4, + "disp": false, + "width": "4", + "collapse": false + }, + { + "id": "196518b2.4d53b7", + "type": "ui_group", + "name": "Group 5", + "tab": "3a6bb13f.c9703e", + "order": 5, + "disp": false, + "width": "4", + "collapse": false + }, + { + "id": "777a7c33.fcd804", + "type": "ui_group", + "name": "Group 6", + "tab": "3a6bb13f.c9703e", + "order": 6, + "disp": false, + "width": "4", + "collapse": false + }, + { + "id": "cef1e703.bcf3c8", + "type": "ui_group", + "name": "Sample Location", + "tab": "737ec584.2eea2c", + "order": 3, + "disp": false, + "width": "10", + "collapse": false + }, + { + "id": "5517c651.b2f668", + "type": "ui_group", + "name": "Validation", + "tab": "737ec584.2eea2c", + "order": 5, + "disp": false, + "width": 10, + "collapse": false + }, + { + "id": "fbd92986.1028c8", + "type": "ui_group", + "name": "Focus Adjustment", + "tab": "181bb236.1e94be", + "order": 2, + "disp": true, + "width": 4, + "collapse": false + }, + { + "id": "707d9797.c8e798", + "type": "ui_group", + "name": "Fluidic Manual Manipulation", + "tab": "181bb236.1e94be", + "order": 5, + "disp": true, + "width": 4, + "collapse": false + }, + { + "id": "7a0b4877.a5d268", + "type": "ui_group", + "name": "Navigation", + "tab": "181bb236.1e94be", + "order": 6, + "disp": false, + "width": 4, + "collapse": false + }, + { + "id": "404c301a.19c4e", + "type": "ui_group", + "name": "Fraction size", + "tab": "c9194f02.9d5e9", + "order": 2, + "disp": true, + "width": "10", + "collapse": false + }, + { + "id": "4322c187.e73e5", + "type": "ui_group", + "name": "Acquisition", + "tab": "c9194f02.9d5e9", + "order": 3, + "disp": true, + "width": 10, + "collapse": false + }, + { + "id": "b7919ae2.c01788", + "type": "ui_group", + "name": "Navigation", + "tab": "c9194f02.9d5e9", + "order": 6, + "disp": false, + "width": "10", + "collapse": false + }, + { + "id": "b5d61bc7.54fe48", + "type": "ui_group", + "name": "Statistics", + "tab": "c9194f02.9d5e9", + "order": 4, + "disp": true, + "width": "10", + "collapse": false + }, + { + "id": "8dc3722c.06efa8", + "type": "mqtt-broker", + "name": "", + "broker": "0.0.0.0", + "port": "1883", + "clientid": "Client_node", + "autoConnect": true, + "usetls": false, + "compatmode": false, + "protocolVersion": "4", + "keepalive": "60", + "cleansession": true, + "birthTopic": "", + "birthQos": "0", + "birthPayload": "", + "birthMsg": {}, + "closeTopic": "", + "closeQos": "0", + "closePayload": "", + "closeMsg": {}, + "willTopic": "", + "willQos": "0", + "willPayload": "", + "willMsg": {}, + "userProps": "", + "sessionExpiry": "" + }, + { + "id": "abeb6dad.635a2", + "type": "ui_group", + "name": "Control", + "tab": "8d16beb8.9b3fb", + "order": 1, + "disp": true, + "width": 10, + "collapse": false + }, + { + "id": "cf5d9f0e.d57e7", + "type": "ui_group", + "name": "Net Metadata", + "tab": "737ec584.2eea2c", + "order": 4, + "disp": false, + "width": "10", + "collapse": false + }, + { + "id": "ce9e278.781eed8", + "type": "ui_group", + "name": "Information", + "tab": "d9cd733b.ab73d", + "order": 5, + "disp": true, + "width": 6, + "collapse": false + }, + { + "id": "70de8209.68416c", + "type": "ui_group", + "name": "Status", + "tab": "c9194f02.9d5e9", + "order": 5, + "disp": true, + "width": 10, + "collapse": false + }, + { + "id": "46be9c86.dea684", + "type": "ui_group", + "name": "Status", + "tab": "8d16beb8.9b3fb", + "order": 2, + "disp": true, + "width": 10, + "collapse": false + }, + { + "id": "8c38a81e.9897a8", + "type": "ui_group", + "name": "Camera Settings", + "tab": "181bb236.1e94be", + "order": 3, + "disp": true, + "width": 6, + "collapse": false + }, + { + "id": "2489e51c.eed77a", + "type": "ui_tab", + "name": "Administration", + "icon": "dashboard", + "order": 9, + "disabled": false, + "hidden": false + }, + { + "id": "b0fb559a.6966a8", + "type": "ui_tab", + "name": "Hardware Settings", + "icon": "fa-cogs", + "disabled": false, + "hidden": false + }, + { + "id": "6be36295.0ab324", + "type": "ui_group", + "name": "Settings", + "tab": "b0fb559a.6966a8", + "order": 1, + "disp": false, + "width": "8", + "collapse": false, + "className": "" + }, + { + "id": "fc5e4e6f.5b1c8", + "type": "ui_group", + "name": "GPS Status", + "tab": "737ec584.2eea2c", + "order": 6, + "disp": true, + "width": 10, + "collapse": false + }, + { + "id": "f3ca28ef.4df0a8", + "type": "ui_group", + "name": "Shutdown", + "tab": "3a6bb13f.c9703e", + "order": 7, + "disp": true, + "width": 4, + "collapse": false + }, + { + "id": "3dfd8a69.69ed56", + "type": "ui_spacer", + "name": "spacer", + "group": "3e1ba03d.f01d8", + "order": 5, + "width": 10, + "height": 1 + }, + { + "id": "72a9216.2ff48e", + "type": "ui_spacer", + "name": "spacer", + "group": "4322c187.e73e5", + "order": 8, + "width": 10, + "height": 1 + }, + { + "id": "1b664927.c91d1f", + "type": "ui_spacer", + "name": "spacer", + "group": "b5d61bc7.54fe48", + "order": 2, + "width": 2, + "height": 1 + }, + { + "id": "1a663b6a.ab5805", + "type": "ui_spacer", + "name": "spacer", + "group": "b5d61bc7.54fe48", + "order": 4, + "width": 2, + "height": 1 + }, + { + "id": "8eeed8d8.ad9098", + "type": "ui_spacer", + "name": "spacer", + "group": "b5d61bc7.54fe48", + "order": 5, + "width": 2, + "height": 1 + }, + { + "id": "be1c5ce7.004e", + "type": "ui_spacer", + "name": "spacer", + "group": "b5d61bc7.54fe48", + "order": 6, + "width": 2, + "height": 1 + }, + { + "id": "c2fe38e9.555e3", + "type": "ui_spacer", + "name": "spacer", + "group": "b5d61bc7.54fe48", + "order": 7, + "width": 2, + "height": 1 + }, + { + "id": "89bd18b7.c779a8", + "type": "ui_spacer", + "name": "spacer", + "group": "b5d61bc7.54fe48", + "order": 8, + "width": 2, + "height": 1 + }, + { + "id": "3cbbfa5d.efa636", + "type": "ui_spacer", + "name": "spacer", + "group": "b7919ae2.c01788", + "order": 2, + "width": 5, + "height": 1 + }, + { + "id": "97148e8d8e298f1a", + "type": "ui_spacer", + "z": "cb95299c.2817c8", + "name": "spacer", + "group": "abeb6dad.635a2", + "order": 7, + "width": 10, + "height": 1 + }, + { + "id": "3b2eccc574e6a9ae", + "type": "ui_spacer", + "z": "cb95299c.2817c8", + "name": "spacer", + "group": "abeb6dad.635a2", + "order": 11, + "width": 1, + "height": 1 + }, + { + "id": "bbd6431d97c86f97", + "type": "ui_spacer", + "z": "cb95299c.2817c8", + "name": "spacer", + "group": "46be9c86.dea684", + "order": 4, + "width": 3, + "height": 1 + }, + { + "id": "5f98f5f140f0ecde", + "type": "ui_spacer", + "z": "cb95299c.2817c8", + "name": "spacer", + "group": "46be9c86.dea684", + "order": 6, + "width": 3, + "height": 1 + }, + { + "id": "7bc0a4c416e4545c", + "type": "ui_group", + "name": "Culture Date and Time", + "tab": "737ec584.2eea2c", + "order": 2, + "disp": true, + "width": "10", + "collapse": false, + "className": "" + }, + { + "id": "6c31ad948a9d62fd", + "type": "ui_spacer", + "name": "spacer", + "group": "4248342d.e55fac", + "order": 2, + "width": 1, + "height": 1 + }, + { + "id": "833bc5bb.217ba8", + "type": "ui_group", + "name": "Preview", + "tab": "181bb236.1e94be", + "order": 1, + "disp": true, + "width": 18, + "collapse": false + }, + { + "id": "a7d64879.38298", + "type": "ui_group", + "name": "Logs", + "tab": "2489e51c.eed77a", + "order": 1, + "disp": true, + "width": "12", + "collapse": true, + "className": "" + }, + { + "id": "6465bdd5.15eb8c", + "type": "file in", + "z": "1c24ad9c.bebec2", + "name": "", + "filename": "/home/pi/PlanktoScope/config.json", + "filenameType": "str", + "format": "utf8", + "chunk": false, + "sendError": false, + "encoding": "none", + "x": 560, + "y": 60, + "wires": [ + [ + "15ceb135.6628bf" + ] + ], + "info": "# PlanktoScope Help\nThis Node will read the content of the file named **config.txt** containing all the input placeholders.\n" + }, + { + "id": "15ceb135.6628bf", + "type": "json", + "z": "1c24ad9c.bebec2", + "name": "config.json", + "property": "payload", + "action": "", + "pretty": false, + "x": 730, + "y": 60, + "wires": [ + [ + "ad541674.4791c8" + ] + ] + }, + { + "id": "7205d267.36adcc", + "type": "file", + "z": "1c24ad9c.bebec2", + "name": "", + "filename": "/home/pi/PlanktoScope/config.json", + "appendNewline": true, + "createDir": true, + "overwriteFile": "true", + "encoding": "none", + "x": 990, + "y": 160, + "wires": [ + [] + ] + }, + { + "id": "2e6ddf51.c0dba", + "type": "json", + "z": "1c24ad9c.bebec2", + "name": "config.json", + "property": "payload", + "action": "str", + "pretty": true, + "x": 730, + "y": 160, + "wires": [ + [ + "7205d267.36adcc" + ] + ] + }, + { + "id": "ad541674.4791c8", + "type": "function", + "z": "1c24ad9c.bebec2", + "name": "Global Set", + "func": "global.set(\"config_keys\", Object.keys(msg.payload));\n\nfor (const key in msg.payload) {\n global.set(key, msg.payload[key]);\n}\n\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "x": 910, + "y": 60, + "wires": [ + [] + ] + }, + { + "id": "3e9a33c.141384c", + "type": "inject", + "z": "1c24ad9c.bebec2", + "name": "Load config", + "props": [ + { + "p": "topic", + "vt": "str" + } + ], + "repeat": "", + "crontab": "", + "once": true, + "onceDelay": 0.1, + "topic": "", + "payloadType": "str", + "x": 230, + "y": 60, + "wires": [ + [ + "6465bdd5.15eb8c" + ] + ] + }, + { + "id": "3ad9835.08c937c", + "type": "function", + "z": "1c24ad9c.bebec2", + "name": "get config payload", + "func": "keys = global.get(\"config_keys\")\n\nvar payload = {}\n\nkeys.forEach(function(item, index, array) {\n payload[item] = global.get(item);\n})\n\nreturn {\"payload\": payload};", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 410, + "y": 160, + "wires": [ + [ + "2e6ddf51.c0dba" + ] + ] + }, + { + "id": "f439663c.8abd3", + "type": "ui_ui_control", + "z": "1c24ad9c.bebec2", + "name": "Connect Event", + "events": "connect", + "x": 220, + "y": 100, + "wires": [ + [ + "6465bdd5.15eb8c" + ] + ] + }, + { + "id": "82099021.9ceb08", + "type": "file", + "z": "4ed26b8b.253504", + "name": "", + "filename": "/home/pi/PlanktoScope/hardware.json", + "appendNewline": true, + "createDir": true, + "overwriteFile": "true", + "encoding": "none", + "x": 660, + "y": 40, + "wires": [ + [] + ] + }, + { + "id": "bb0a8725.a1849", + "type": "json", + "z": "4ed26b8b.253504", + "name": "Create JSON", + "property": "payload", + "action": "str", + "pretty": true, + "x": 490, + "y": 40, + "wires": [ + [ + "82099021.9ceb08" + ] + ] + }, + { + "id": "53d163be.47cf24", + "type": "function", + "z": "4ed26b8b.253504", + "name": "Update and retrieve hardware_conf", + "func": "// change global\nhardware_conf = global.get(\"hardware_conf\");\n\nif (msg.topic == \"process_pixel_fixed\" && msg.payload == 0){\n delete hardware_conf[msg.topic]\n delete msg.topic\n}\n\nif (msg.topic !== null && msg.topic !== undefined){\n hardware_conf[msg.topic] = msg.payload;\n global.set(\"hardware_conf\", hardware_conf);\n}\n\nreturn {\"payload\": hardware_conf};", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 240, + "y": 40, + "wires": [ + [ + "bb0a8725.a1849" + ] + ] + }, + { + "id": "48ceeda454438cb7", + "type": "file in", + "z": "e6665421f66ea4c8", + "name": "", + "filename": "/home/pi/PlanktoScope/hardware.json", + "filenameType": "str", + "format": "utf8", + "chunk": false, + "sendError": false, + "encoding": "none", + "x": 250, + "y": 40, + "wires": [ + [ + "853c938a270fd85e" + ] + ], + "info": "# PlanktoScope Help\nThis Node will read the content of the file named **config.txt** containing all the input placeholders.\n" + }, + { + "id": "853c938a270fd85e", + "type": "json", + "z": "e6665421f66ea4c8", + "name": "Parse JSON", + "property": "payload", + "action": "", + "pretty": false, + "x": 510, + "y": 40, + "wires": [ + [ + "2b1a67ac127f3fe7" + ] + ] + }, + { + "id": "2b1a67ac127f3fe7", + "type": "change", + "z": "e6665421f66ea4c8", + "name": "", + "rules": [ + { + "t": "set", + "p": "hardware_conf", + "pt": "global", + "to": "payload", + "tot": "msg" + } + ], + "action": "", + "property": "", + "from": "", + "to": "", + "reg": false, + "x": 730, + "y": 40, + "wires": [ + [] + ] + }, + { + "id": "2f30a6ee99587899", + "type": "comment", + "z": "eaae323a.31b3", + "name": "LICENSE", + "info": "Copyright 2022 Thibaut Pollina and Romain Bazile\nLicensed under GPL v3.0", + "x": 140, + "y": 600, + "wires": [] + }, + { + "id": "4e78af2d.90be7", + "type": "ui_ui_control", + "z": "eaae323a.31b3", + "name": "", + "events": "change", + "x": 440, + "y": 160, + "wires": [ + [] + ] + }, + { + "id": "7789839d.69b48c", + "type": "ui_template", + "z": "eaae323a.31b3", + "group": "4e0cd5ea.17e59c", + "name": "Optic Configuration", + "order": 1, + "width": 4, + "height": 4, + "format": "\n \n
Optic Configuration
\n", + "storeOutMessages": true, + "fwdInMessages": true, + "resendOnRefresh": false, + "templateScope": "local", + "x": 130, + "y": 100, + "wires": [ + [ + "4e78af2d.90be7" + ] + ] + }, + { + "id": "6ea6c306.f9c12c", + "type": "ui_template", + "z": "eaae323a.31b3", + "group": "ef590206.24f6", + "name": "Fluidic Acquisition", + "order": 1, + "width": 4, + "height": 4, + "format": "\n \n
Fluidic Acquisition
\n", + "storeOutMessages": true, + "fwdInMessages": true, + "resendOnRefresh": false, + "templateScope": "local", + "x": 130, + "y": 140, + "wires": [ + [ + "4e78af2d.90be7" + ] + ] + }, + { + "id": "bb9eb153.9e36c", + "type": "ui_template", + "z": "eaae323a.31b3", + "group": "ae8f6620.073358", + "name": "Segmentation", + "order": 1, + "width": 4, + "height": 4, + "format": "\n \n
Segmentation
\n", + "storeOutMessages": true, + "fwdInMessages": true, + "resendOnRefresh": false, + "templateScope": "local", + "x": 140, + "y": 180, + "wires": [ + [ + "4e78af2d.90be7" + ] + ] + }, + { + "id": "eaf8ee7f.96f44", + "type": "ui_template", + "z": "eaae323a.31b3", + "group": "196518b2.4d53b7", + "name": "Gallery", + "order": 1, + "width": 4, + "height": 4, + "format": "\n \n
Gallery
\n", + "storeOutMessages": true, + "fwdInMessages": true, + "resendOnRefresh": false, + "templateScope": "local", + "x": 160, + "y": 220, + "wires": [ + [ + "4e78af2d.90be7" + ] + ] + }, + { + "id": "c1b1469.9650eb8", + "type": "ui_template", + "z": "eaae323a.31b3", + "group": "777a7c33.fcd804", + "name": "System Monitoring", + "order": 1, + "width": 4, + "height": 4, + "format": "\n \n
System Monitoring
\n", + "storeOutMessages": true, + "fwdInMessages": true, + "resendOnRefresh": false, + "templateScope": "local", + "x": 130, + "y": 260, + "wires": [ + [ + "4e78af2d.90be7" + ] + ] + }, + { + "id": "abafd6e6.04a5f8", + "type": "ui_template", + "z": "eaae323a.31b3", + "group": "6f97e7ae.270c48", + "name": "Sample", + "order": 1, + "width": 4, + "height": 4, + "format": "\n \n
Sample
\n
\n In doubt? Start Here!\n", + "storeOutMessages": true, + "fwdInMessages": true, + "resendOnRefresh": false, + "templateScope": "local", + "x": 160, + "y": 60, + "wires": [ + [ + "4e78af2d.90be7" + ] + ] + }, + { + "id": "dab82064.26a8d", + "type": "ui_button", + "z": "eaae323a.31b3", + "name": "Unlock button", + "group": "f3ca28ef.4df0a8", + "order": 2, + "width": 0, + "height": 0, + "passthru": false, + "label": "Unlock button", + "tooltip": "", + "color": "", + "bgcolor": "", + "icon": "", + "payload": "shutdown", + "payloadType": "flow", + "topic": "", + "x": 120, + "y": 380, + "wires": [ + [ + "6c3a3b4.78cad44" + ] + ] + }, + { + "id": "1c658761.b852a1", + "type": "ui_toast", + "z": "eaae323a.31b3", + "position": "dialog", + "displayTime": "3", + "highlight": "", + "sendall": true, + "outputs": 1, + "ok": "YES PLEASE", + "cancel": "NO!", + "raw": false, + "topic": "Are you sure?", + "name": "Confirmation message", + "x": 800, + "y": 380, + "wires": [ + [ + "8f1b8e23.daafe" + ] + ] + }, + { + "id": "a48ff63f.db5e18", + "type": "inject", + "z": "eaae323a.31b3", + "name": "disabled", + "props": [ + { + "p": "enabled", + "v": "false", + "vt": "bool" + } + ], + "repeat": "", + "crontab": "", + "once": true, + "onceDelay": 0.1, + "topic": "", + "x": 140, + "y": 420, + "wires": [ + [ + "d58039a9.6e7928" + ] + ] + }, + { + "id": "b67a7147.65fcd8", + "type": "ui_button", + "z": "eaae323a.31b3", + "name": "Shutdown button", + "group": "f3ca28ef.4df0a8", + "order": 4, + "width": 0, + "height": 0, + "passthru": false, + "label": "Shutdown", + "tooltip": "", + "color": "", + "bgcolor": "#AD1625", + "icon": "fa-power-off fa-2x", + "payload": "Do you want to turn the machine off now?", + "payloadType": "str", + "topic": "", + "x": 550, + "y": 380, + "wires": [ + [ + "1c658761.b852a1" + ] + ] + }, + { + "id": "d58039a9.6e7928", + "type": "change", + "z": "eaae323a.31b3", + "name": "", + "rules": [ + { + "t": "set", + "p": "shutdown", + "pt": "flow", + "to": "false", + "tot": "bool" + }, + { + "t": "set", + "p": "enabled", + "pt": "msg", + "to": "shutdown", + "tot": "flow" + } + ], + "action": "", + "property": "", + "from": "", + "to": "", + "reg": false, + "x": 320, + "y": 420, + "wires": [ + [ + "b67a7147.65fcd8" + ] + ] + }, + { + "id": "6c3a3b4.78cad44", + "type": "function", + "z": "eaae323a.31b3", + "name": "Toggle", + "func": "flow.set(\"shutdown\", !flow.get(\"shutdown\"))\nmsg.enabled = flow.get(\"shutdown\")\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "x": 290, + "y": 380, + "wires": [ + [ + "b67a7147.65fcd8" + ] + ] + }, + { + "id": "d1153ad6.40d738", + "type": "ui_template", + "z": "eaae323a.31b3", + "group": "f3ca28ef.4df0a8", + "name": "Shutdown information", + "order": 1, + "width": 0, + "height": 0, + "format": "
To prevent data corruption, please always shutdown the machine before unplugging the unit.\n

\nRemember to first unlock the shutdown button.\n
", + "storeOutMessages": true, + "fwdInMessages": false, + "resendOnRefresh": true, + "templateScope": "local", + "x": 120, + "y": 320, + "wires": [ + [] + ] + }, + { + "id": "e08cfcb8.2a67e8", + "type": "link out", + "z": "eaae323a.31b3", + "name": "Home shutdown button", + "links": [ + "b81b990a.d4dca" + ], + "x": 715, + "y": 500, + "wires": [] + }, + { + "id": "ce7087fc.dcc9e8", + "type": "ui_toast", + "z": "eaae323a.31b3", + "position": "dialog", + "displayTime": "10", + "highlight": "", + "sendall": true, + "outputs": 1, + "ok": "OK", + "cancel": "", + "raw": false, + "topic": "Turning off now!", + "name": "Shutdown message", + "x": 570, + "y": 540, + "wires": [ + [] + ] + }, + { + "id": "7d1626a0.deb85", + "type": "change", + "z": "eaae323a.31b3", + "name": "shutdown!", + "rules": [ + { + "t": "set", + "p": "payload", + "pt": "msg", + "to": "shutdown", + "tot": "str" + } + ], + "action": "", + "property": "", + "from": "", + "to": "", + "reg": false, + "x": 300, + "y": 500, + "wires": [ + [ + "e08cfcb8.2a67e8" + ] + ] + }, + { + "id": "8f1b8e23.daafe", + "type": "switch", + "z": "eaae323a.31b3", + "name": "", + "property": "payload", + "propertyType": "msg", + "rules": [ + { + "t": "eq", + "v": "NO!", + "vt": "str" + }, + { + "t": "else" + } + ], + "checkall": "true", + "repair": false, + "outputs": 2, + "x": 150, + "y": 500, + "wires": [ + [ + "d58039a9.6e7928" + ], + [ + "7d1626a0.deb85", + "281a56c9.ec7902" + ] + ] + }, + { + "id": "281a56c9.ec7902", + "type": "change", + "z": "eaae323a.31b3", + "name": "Shutdown message", + "rules": [ + { + "t": "set", + "p": "payload", + "pt": "msg", + "to": "Please wait a minute before disconnecting the machine from its power supply!", + "tot": "str" + } + ], + "action": "", + "property": "", + "from": "", + "to": "", + "reg": false, + "x": 330, + "y": 540, + "wires": [ + [ + "ce7087fc.dcc9e8" + ] + ] + }, + { + "id": "4557d689.a4fa88", + "type": "ui_text_input", + "z": "b771c342.49603", + "name": "sample_ship", + "label": "Name of the ship", + "tooltip": "", + "group": "3e1ba03d.f01d8", + "order": 2, + "width": 0, + "height": 0, + "passthru": true, + "mode": "text", + "delay": "300", + "topic": "sample_ship", + "sendOnBlur": true, + "className": "", + "topicType": "str", + "x": 670, + "y": 80, + "wires": [ + [ + "9f501f49.45645" + ] + ] + }, + { + "id": "fcfc31ae.af3af", + "type": "ui_dropdown", + "z": "b771c342.49603", + "name": "sample_sampling_gear", + "label": "Sampling gear*", + "tooltip": "", + "place": "Choose from list", + "group": "3e1ba03d.f01d8", + "order": 6, + "width": 0, + "height": 0, + "passthru": true, + "multiple": false, + "options": [ + { + "label": "High Speed Net", + "value": "net_hsn", + "type": "str" + }, + { + "label": "Tara Decknet", + "value": "net_decknet", + "type": "str" + }, + { + "label": "Plankton net", + "value": "net", + "type": "str" + }, + { + "label": "Niskin bottle 12L", + "value": "niskin_12L", + "type": "str" + }, + { + "label": "Niskin bottle 24L", + "value": "niskin_24L", + "type": "str" + }, + { + "label": "Pass Hull", + "value": "pass_hull", + "type": "str" + }, + { + "label": "Single location (with net or bucket)", + "value": "single_location", + "type": "str" + }, + { + "label": "Lab culture", + "value": "culture", + "type": "str" + }, + { + "label": "Test", + "value": "test", + "type": "str" + } + ], + "payload": "", + "topic": "sample_sampling_gear", + "topicType": "str", + "className": "", + "x": 630, + "y": 200, + "wires": [ + [ + "9f501f49.45645", + "46eb1bf8.3dc5f4", + "3ac7b631f5d8ef90" + ] + ] + }, + { + "id": "82c5fc77.59c97", + "type": "ui_text_input", + "z": "b771c342.49603", + "name": "sample_operator", + "label": "Name of the operator*", + "tooltip": "", + "group": "3e1ba03d.f01d8", + "order": 3, + "width": 0, + "height": 0, + "passthru": true, + "mode": "text", + "delay": "300", + "topic": "sample_operator", + "sendOnBlur": true, + "className": "", + "topicType": "str", + "x": 650, + "y": 160, + "wires": [ + [ + "9f501f49.45645" + ] + ] + }, + { + "id": "9c882b37.fde668", + "type": "ui_text_input", + "z": "b771c342.49603", + "name": "sample_project", + "label": "Name of the project*", + "tooltip": "", + "group": "3e1ba03d.f01d8", + "order": 1, + "width": 0, + "height": 0, + "passthru": true, + "mode": "text", + "delay": "300", + "topic": "sample_project", + "sendOnBlur": true, + "className": "", + "topicType": "str", + "x": 660, + "y": 40, + "wires": [ + [ + "9f501f49.45645" + ] + ] + }, + { + "id": "94eb4221.9b92c", + "type": "ui_text_input", + "z": "b771c342.49603", + "name": "sample_id", + "label": "Station ID*", + "tooltip": "", + "group": "3e1ba03d.f01d8", + "order": 4, + "width": 0, + "height": 0, + "passthru": true, + "mode": "text", + "delay": "300", + "topic": "sample_id", + "sendOnBlur": true, + "className": "", + "topicType": "str", + "x": 670, + "y": 120, + "wires": [ + [ + "9f501f49.45645" + ] + ] + }, + { + "id": "9f501f49.45645", + "type": "function", + "z": "b771c342.49603", + "name": "set global", + "func": "global.set(msg.topic,msg.payload);", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 1080, + "y": 200, + "wires": [ + [] + ] + }, + { + "id": "222c851d.5d0a3a", + "type": "ui_ui_control", + "z": "b771c342.49603", + "name": "", + "events": "change", + "x": 400, + "y": 880, + "wires": [ + [] + ] + }, + { + "id": "52f6b103.1efb6", + "type": "ui_toast", + "z": "b771c342.49603", + "position": "dialog", + "displayTime": "3", + "highlight": "", + "sendall": true, + "outputs": 1, + "ok": "OK", + "cancel": "", + "raw": false, + "topic": "", + "name": "", + "x": 710, + "y": 980, + "wires": [ + [] + ] + }, + { + "id": "986d960a.c75908", + "type": "function", + "z": "b771c342.49603", + "name": "Check form", + "func": "var sample_project= global.get(\"sample_project\");\nvar sample_id= global.get(\"sample_id\");\nvar sample_operator= global.get(\"sample_operator\");\nvar sample_sampling_gear= global.get(\"sample_sampling_gear\");\nvar object_lat= global.get(\"object_lat\");\nvar object_lon= global.get(\"object_lon\");\nvar object_date= global.get(\"object_date\");\nvar object_time= global.get(\"object_time\");\nif (sample_project === undefined || sample_project === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Sample project\"\n return [null, msg];\n}\n\nelse if (sample_id === undefined || sample_id === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Sample ID\"\n return [null, msg];\n}\n\nelse if (sample_operator === undefined || sample_operator === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Sample operator\"\n return [null, msg];\n}\n\nelse if (sample_sampling_gear === undefined || sample_sampling_gear === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Sample sampling gear\"\n return [null, msg];\n}\n\nelse if (object_lat === undefined || object_lat === null) {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Latitude of sample\"\n return [null, msg];\n}\n\nelse if (object_lon === undefined || object_lon === null) {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Longitude of sample\"\n return [null, msg];\n}\n\nelse if (object_date === undefined || object_date === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Date of sample\"\n return [null, msg];\n}\n\nelse if (object_time === undefined || object_time === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Time of sample\"\n return [null, msg];\n}\nelse if (sample_sampling_gear.startsWith(\"net\")){\n var object_lat_end = global.get(\"object_lat_end\");\n var object_lon_end = global.get(\"object_lon_end\");\n var object_date_end = global.get(\"object_date_end\");\n var object_time_end = global.get(\"object_time_end\");\n var sample_gear_net_opening = global.get(\"sample_gear_net_opening\");\n\n if (object_lat_end === undefined || object_lat_end === null) {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Latitude of retrieval\"\n return [null, msg];\n }\n \n else if (object_lon_end === undefined || object_lon_end === null) {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Longitude of retrieval\"\n return [null, msg];\n }\n \n else if (object_date_end === undefined || object_date_end === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Date of retrieval\"\n return [null, msg];\n }\n \n else if (object_time_end === undefined || object_time_end === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Time of retrieval\"\n return [null, msg];\n }\n \n else if (sample_gear_net_opening === undefined || sample_gear_net_opening === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Net opening dimension\"\n return [null, msg];\n }\n \n if (sample_sampling_gear == \"net_decknet\"){\n var sample_total_volume = global.get(\"sample_total_volume\");\n if (sample_total_volume === undefined || sample_total_volume === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Decknet flowmeter readings\"\n return [null, msg];\n }\n }\n}\nmsg.topic = \"config_save\"\nmsg.payload={\"tab\":\"Optic Configuration\"};\n\nreturn [msg, null];", + "outputs": 2, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 470, + "y": 940, + "wires": [ + [ + "726a7822.cd6298", + "e2b277c1.07283" + ], + [ + "52f6b103.1efb6" + ] + ], + "outputLabels": [ + "message", + "error" + ] + }, + { + "id": "18f44504.cac66b", + "type": "gpsd", + "z": "b771c342.49603", + "name": "", + "hostname": "localhost", + "port": "2947", + "tpv": true, + "sky": false, + "info": false, + "device": false, + "gst": false, + "att": false, + "x": 250, + "y": 1240, + "wires": [ + [ + "258b4562.9f778a", + "54e37580.fdc31c", + "cc21ca16.b92928", + "4a4de52c.cf2884", + "73c4a14a.9b93c8" + ] + ] + }, + { + "id": "726a7822.cd6298", + "type": "ui_ui_control", + "z": "b771c342.49603", + "name": "", + "events": "change", + "x": 700, + "y": 900, + "wires": [ + [] + ] + }, + { + "id": "16de754c.cc969b", + "type": "ui_button", + "z": "b771c342.49603", + "name": "", + "group": "5517c651.b2f668", + "order": 1, + "width": 5, + "height": 1, + "passthru": false, + "label": "Previous", + "tooltip": "", + "color": "#097479", + "bgcolor": "white", + "icon": "keyboard_return", + "payload": "{\"tab\":\"Home\"}", + "payloadType": "json", + "topic": "", + "x": 240, + "y": 880, + "wires": [ + [ + "222c851d.5d0a3a" + ] + ] + }, + { + "id": "84f3d040.5f7ea", + "type": "ui_button", + "z": "b771c342.49603", + "name": "", + "group": "5517c651.b2f668", + "order": 2, + "width": 5, + "height": 1, + "passthru": false, + "label": "Continue", + "tooltip": "", + "color": "#097479", + "bgcolor": "white", + "icon": "keyboard_tab", + "payload": "{\"tab\":\"Home\"}", + "payloadType": "json", + "topic": "", + "x": 240, + "y": 940, + "wires": [ + [ + "986d960a.c75908" + ] + ] + }, + { + "id": "d027a6bf.7049e8", + "type": "function", + "z": "b771c342.49603", + "name": "get sample_projet", + "func": "msg.payload = msg.payload.sample_project;\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 310, + "y": 40, + "wires": [ + [ + "9c882b37.fde668" + ] + ] + }, + { + "id": "5a811caf.0f3144", + "type": "function", + "z": "b771c342.49603", + "name": "get sample_ship", + "func": "msg.payload = msg.payload.sample_ship;\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 300, + "y": 80, + "wires": [ + [ + "4557d689.a4fa88" + ] + ] + }, + { + "id": "45911c98.2bd83c", + "type": "function", + "z": "b771c342.49603", + "name": "get sample_id", + "func": "msg.payload = msg.payload.sample_id;\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 300, + "y": 120, + "wires": [ + [ + "94eb4221.9b92c" + ] + ] + }, + { + "id": "1e09a4ab.72996b", + "type": "function", + "z": "b771c342.49603", + "name": "get sample_operator", + "func": "msg.payload = msg.payload.sample_operator;\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 320, + "y": 160, + "wires": [ + [ + "82c5fc77.59c97" + ] + ] + }, + { + "id": "a3272681.f271c8", + "type": "function", + "z": "b771c342.49603", + "name": "get sample_sampling_gear", + "func": "msg.topic = \"sample_sampling_gear\"\nif (msg.payload.sample_sampling_gear === undefined){\n msg.payload = \"net\";\n}\nelse\n{\n msg.payload = msg.payload.sample_sampling_gear;\n}\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 340, + "y": 200, + "wires": [ + [ + "fcfc31ae.af3af" + ] + ] + }, + { + "id": "a6907a38.f6611", + "type": "subflow:1c24ad9c.bebec2", + "z": "b771c342.49603", + "name": "", + "env": [], + "x": 70, + "y": 220, + "wires": [ + [ + "d027a6bf.7049e8", + "5a811caf.0f3144", + "45911c98.2bd83c", + "1e09a4ab.72996b", + "8dff1648.82e42", + "9f04c5ec.75f3d8", + "f408a273.4fb538", + "e73fd87d.d24e4", + "489c8e06.cc7d6", + "a3272681.f271c8" + ] + ] + }, + { + "id": "e2b277c1.07283", + "type": "subflow:1c24ad9c.bebec2", + "z": "b771c342.49603", + "name": "", + "env": [], + "x": 690, + "y": 940, + "wires": [ + [] + ] + }, + { + "id": "7116e906.9f50f", + "type": "ui_text", + "z": "b771c342.49603", + "group": "fc5e4e6f.5b1c8", + "order": 1, + "width": 10, + "height": 1, + "name": "GPS Status Display", + "label": "GPS Status:", + "format": "{{msg.payload}}", + "layout": "row-center", + "x": 730, + "y": 1080, + "wires": [] + }, + { + "id": "9c7f7fc9.c8d3a", + "type": "ui_text_input", + "z": "b771c342.49603", + "name": "object_depth_max", + "label": "Max sampling depth (m)", + "tooltip": "in m", + "group": "3e1ba03d.f01d8", + "order": 10, + "width": 5, + "height": 1, + "passthru": true, + "mode": "number", + "delay": "300", + "topic": "object_depth_max", + "sendOnBlur": true, + "className": "", + "topicType": "str", + "x": 650, + "y": 240, + "wires": [ + [ + "9f501f49.45645" + ] + ] + }, + { + "id": "317eeeb7.8d3042", + "type": "ui_text_input", + "z": "b771c342.49603", + "name": "object_depth_min", + "label": "Min sampling depth (m)", + "tooltip": "in m", + "group": "3e1ba03d.f01d8", + "order": 9, + "width": 5, + "height": 1, + "passthru": true, + "mode": "number", + "delay": "300", + "topic": "object_depth_min", + "sendOnBlur": true, + "className": "", + "topicType": "str", + "x": 650, + "y": 280, + "wires": [ + [ + "9f501f49.45645" + ] + ] + }, + { + "id": "cbb123ab.fd3428", + "type": "ui_ui_control", + "z": "b771c342.49603", + "name": "show/hide net groups", + "events": "change", + "x": 1320, + "y": 300, + "wires": [ + [] + ] + }, + { + "id": "642ff403.1ed91c", + "type": "ui_text_input", + "z": "b771c342.49603", + "name": "sample_concentrated_sample_volume", + "label": "Concentrated sample volume (mL)", + "tooltip": "Volume extracted from the net codend (in mL)", + "group": "3e1ba03d.f01d8", + "order": 12, + "width": 10, + "height": 1, + "passthru": true, + "mode": "number", + "delay": "300", + "topic": "sample_concentrated_sample_volume", + "sendOnBlur": true, + "className": "", + "topicType": "str", + "x": 590, + "y": 440, + "wires": [ + [ + "9f501f49.45645" + ] + ] + }, + { + "id": "e967b844.46aa48", + "type": "ui_text_input", + "z": "b771c342.49603", + "name": "sample_gear_net_opening", + "label": "Net opening dimension (mm)", + "tooltip": "Size of the net mouth opening (in mm)", + "group": "cf5d9f0e.d57e7", + "order": 1, + "width": 10, + "height": 1, + "passthru": true, + "mode": "number", + "delay": "300", + "topic": "sample_gear_net_opening", + "sendOnBlur": true, + "className": "", + "topicType": "str", + "x": 620, + "y": 320, + "wires": [ + [ + "9f501f49.45645" + ] + ] + }, + { + "id": "c0ce5626.b6c5", + "type": "ui_toast", + "z": "b771c342.49603", + "position": "dialog", + "displayTime": "3", + "highlight": "", + "sendall": true, + "outputs": 1, + "ok": "OK", + "cancel": "", + "raw": false, + "topic": "", + "name": "", + "x": 1230, + "y": 620, + "wires": [ + [] + ] + }, + { + "id": "c33f1124.af6688", + "type": "ui_form", + "z": "b771c342.49603", + "name": "sample_location", + "label": "Sample Location", + "group": "cef1e703.bcf3c8", + "order": 1, + "width": 0, + "height": 0, + "options": [ + { + "label": "Latitude (36.574439°N or 36°57.4439'N)", + "value": "object_lat", + "type": "text", + "required": true, + "rows": null + }, + { + "label": "Longitude (110.42100°W or 110°4.2100'W)", + "value": "object_lon", + "type": "text", + "required": true, + "rows": null + }, + { + "label": "Date (YYYY-MM-DD, UTC)", + "value": "object_date", + "type": "text", + "required": true, + "rows": null + }, + { + "label": "Time (HH:MM(:SS), UTC 24h)", + "value": "object_time", + "type": "text", + "required": true, + "rows": null + } + ], + "formValue": { + "object_lat": "", + "object_lon": "", + "object_date": "", + "object_time": "" + }, + "payload": "", + "submit": "Validate", + "cancel": "Reset", + "topic": "sample_location", + "x": 660, + "y": 580, + "wires": [ + [ + "14658615.47c862", + "3318a1aaa70fc2ee" + ] + ] + }, + { + "id": "358908cd.416ab", + "type": "ui_form", + "z": "b771c342.49603", + "name": "net_throw_location", + "label": "Net Throw Location", + "group": "cf5d9f0e.d57e7", + "order": 3, + "width": 0, + "height": 0, + "options": [ + { + "label": "Latitude (36.574439°N or 36°57.4439'N)", + "value": "object_lat", + "type": "text", + "required": true, + "rows": null + }, + { + "label": "Longitude (110.42100°W or 110°4.2100'W)", + "value": "object_lon", + "type": "text", + "required": true, + "rows": null + }, + { + "label": "Date (YYYY-MM-DD UTC)", + "value": "object_date", + "type": "text", + "required": true, + "rows": null + }, + { + "label": "Time (HH:MM, UTC 24h)", + "value": "object_time", + "type": "text", + "required": true, + "rows": null + } + ], + "formValue": { + "object_lat": "", + "object_lon": "", + "object_date": "", + "object_time": "" + }, + "payload": "", + "submit": "Validate", + "cancel": "", + "topic": "net_throw_location", + "topicType": "str", + "splitLayout": false, + "className": "", + "x": 650, + "y": 620, + "wires": [ + [ + "14658615.47c862", + "cc67c97f55a340d3" + ] + ] + }, + { + "id": "56d40584.eff4e4", + "type": "ui_form", + "z": "b771c342.49603", + "name": "net_retrieval_location", + "label": "Net Retrieval Location", + "group": "cf5d9f0e.d57e7", + "order": 4, + "width": 0, + "height": 0, + "options": [ + { + "label": "Latitude (36.574439°N or 36°57.4439'N)", + "value": "object_lat_end", + "type": "text", + "required": true, + "rows": null + }, + { + "label": "Longitude (110.42100°W or 110°4.2100'W)", + "value": "object_lon_end", + "type": "text", + "required": true, + "rows": null + }, + { + "label": "Date (YYYY-MM-DD UTC)", + "value": "object_date_end", + "type": "text", + "required": true, + "rows": null + }, + { + "label": "Time (HH:MM, UTC 24h)", + "value": "object_time_end", + "type": "text", + "required": true, + "rows": null + } + ], + "formValue": { + "object_lat_end": "", + "object_lon_end": "", + "object_date_end": "", + "object_time_end": "" + }, + "payload": "", + "submit": "Validate", + "cancel": "", + "topic": "net_retrieval_location", + "topicType": "str", + "splitLayout": false, + "x": 640, + "y": 660, + "wires": [ + [ + "14658615.47c862", + "9c8f370d124a55e4" + ] + ] + }, + { + "id": "14658615.47c862", + "type": "function", + "z": "b771c342.49603", + "name": "Validate Location / Timestamp", + "func": "// Code added here will be run once\n// whenever the node is started.\nfunction ConvertDDMMToDD(input) {\n // Input Format 36°57.4439'N, 110°4.2100'W\n // From https://stackoverflow.com/questions/1140189/converting-latitude-and-longitude-to-decimal-values\n if (!input.match(/\\d+°\\d+\\.*\\d*\\'[NSEW]/)){\n \treturn \"parsing error\"\n }\n var parts = input.split(/[^\\d.\\w]+/)\n if (parts.length != 3){\n \treturn \"parsing error\"\n }\n var dd = Number(parts[0]) + Number(parts[1])/60\n return dd.toFixed(6) + parts[2]\n}\n\nfunction ValidateCoordinates(input, lat){\n // Input Format 36.574439°N, 110.42100°W\n // Or 36°57.4439'N, 110°4.2100'W\n if (input.match(\"'\")){\n input = ConvertDDMMToDD(input)\n }\n \n var error = {}\n\n if (input.startsWith(\"parsing error\")){\n error.topic = \"Error with the \"\n error.payload = \"You need to respect the format example, 36.574439°N or 36°57.4439'N\"\n return [null, error]\n }\n \n var direction = input.match(/[NSEW]/)\n var position = input.match(/[\\+\\-\\d\\.]+/)\n \n if (direction === null){\n error.topic = \"Error with the \"\n error.payload = \"You need to explicitely enter N/S/E/W\"\n return [null, error]\n }\n \n // Test that position is only made of digits!\n if(/^[\\+\\-]/.test(position)){\n error.topic = \"Error with the \"\n error.payload = \"Use of +/- sign is inconsistent with N/S/E/W letter! Please only use N/S/E/W!\"\n return [null, error]\n }\n \n var dd = Number(position)\n if (lat){\n // Check latitude\n if (direction == \"S\" || direction == \"N\") {\n if (dd>90.0){\n error.topic = \"Error with the \"\n error.payload = \"Latitude is more than 90°\"\n return [null, error]\n }\n }\n if (direction == \"W\" || direction == \"E\") {\n error.topic = \"Error with the \"\n error.payload = \"This is not a Latitude!\"\n return [null, error]\n }\n }\n else{\n // Check longitude\n if (direction == \"W\" || direction == \"E\") {\n if (dd>180.0){\n error.topic = \"Error with the \"\n error.payload = \"Longitude is more than 180°\"\n return [null, error]\n }\n }\n if (direction == \"N\" || direction == \"S\") {\n error.topic = \"Error with the \"\n error.payload = \"This is not a Longitude!\"\n return [null, error]\n }\n }\n \n if (direction == \"S\" || direction == \"W\") {\n dd = dd * -1\n } // Don't do anything for N or E\n return [dd.toFixed(4), null]\n \n}\n\nfunction ValidateDate(input){\n // Input Format 2020-12-25\n var error = {};\n \n if (! /20\\d{2}-[0-1]\\d-[0-3]\\d/.test(input)){\n error.topic = \"Error with the date\";\n error.payload = \"The date should respect the ISO format YYYY-MM-DD\";\n return [null, error];\n }\n else {\n var date = input.match(/\\d+/g);\n if (!((2000 < date[0]) && (date[0] < 2100))){\n error.topic = \"Error with the date\"\n error.payload = \"The year should be between 2000 and 2100\"\n return [null, error]\n }\n else if (!((0 < date[1]) && (date[1] <= 12))){\n error.topic = \"Error with the date\"\n error.payload = \"The month should be between 01 and 12\"\n return [null, error]\n }\n else if (!((0 < date[2]) && (date[2] <= 31))){\n error.topic = \"Error with the date\"\n error.payload = \"The day should be between 01 and 31\"\n return [null, error]\n }\n }\n return [input.replace(/-/g, ''), null]\n}\n\nfunction ValidateTime(input){\n // Input Format 12:00\n var error = {}\n \n if (! /[0-2]?\\d:[0-5]\\d/.test(input)){\n error.topic = \"Error with the time\"\n error.payload = \"The date should respect the ISO format HH:MM\"\n return [null, error]\n }\n else {\n var time = input.match(/\\d+/g)\n \n if (!((0 <= time[0]) && (time[0] < 24))){\n error.topic = \"Error with the time\"\n error.payload = \"The hours should be 0 and 23.\"\n return [null, error]\n }\n else if (!((0 <= time[1]) && (time[1] < 60))){\n error.topic = \"Error with the time\"\n error.payload = \"The minutes should be between 0 and 59\"\n return [null, error]\n }\n }\n return [input.replace(/:/g, ''), null]\n}\n\n\nvar ret\nvar payload_for_form = {payload:{}}\nmsg.valid = false\n\nif (msg.topic == \"culture_timestamp\"){\n ret = ValidateDate(msg.payload.object_date)\n if (ret[1] !== null){\n msg.topic = ret[1].topic + \" of the sample\"\n msg.payload = ret[1].payload\n return [msg, null]\n }\n global.set(\"object_date\", ret[0])\n \n ret = ValidateTime(msg.payload.object_time)\n if (ret[1] !== null){\n msg.topic = ret[1].topic + \" of the sample\"\n msg.payload = ret[1].payload\n return [msg, null]\n }\n global.set(\"object_time\", ret[0])\n return [{topic: \"Date and time format valid!\", payload: \"All good!\", valid: true}, payload_for_form]\n}\nelse if (msg.topic == \"net_retrieval_location\"){\n ret = ValidateCoordinates(msg.payload.object_lat_end, true);\n if (ret[1] !== null){\n msg.topic = ret[1].topic + \" Latitude\"\n msg.payload = ret[1].payload\n return [msg, null]\n }\n global.set(\"object_lat_end\", ret[0])\n ret = ValidateCoordinates(msg.payload.object_lon_end, false)\n if (ret[1] !== null){\n msg.topic = ret[1].topic + \" Longitude\"\n msg.payload = ret[1].payload\n return [msg, null]\n }\n global.set(\"object_lon_end\", ret[0]);\n \n ret = ValidateDate(msg.payload.object_date_end)\n if (ret[1] !== null){\n msg.topic = ret[1].topic + \" of the sample retrieval\"\n msg.payload = ret[1].payload\n return [msg, null]\n }\n global.set(\"object_date_end\", ret[0])\n \n ret = ValidateTime(msg.payload.object_time_end)\n if (ret[1] !== null){\n msg.topic = ret[1].topic + \" of the sample retrieval\"\n msg.payload = ret[1].payload\n return [msg, null]\n }\n global.set(\"object_time_end\", ret[0])\n}\nelse{\n ret = ValidateCoordinates(msg.payload.object_lat, true);\n if (ret[1] !== null){\n msg.topic = ret[1].topic + \" Latitude\";\n msg.payload = ret[1].payload\n return [msg, null]\n }\n global.set(\"object_lat\", ret[0]);\n payload_for_form.payload[\"object_lat_end\"] = msg.payload.object_lat;\n \n ret = ValidateCoordinates(msg.payload.object_lon, false);\n if (ret[1] !== null){\n msg.topic = ret[1].topic + \" Longitude\"\n msg.payload = ret[1].payload\n return [msg, null]\n }\n global.set(\"object_lon\", ret[0])\n payload_for_form.payload[\"object_lon_end\"] = msg.payload.object_lon;\n\n ret = ValidateDate(msg.payload.object_date)\n if (ret[1] !== null){\n msg.topic = ret[1].topic + \" of the sample\"\n msg.payload = ret[1].payload\n return [msg, null]\n }\n global.set(\"object_date\", ret[0])\n payload_for_form.payload[\"object_date_end\"] = msg.payload.object_date;\n \n ret = ValidateTime(msg.payload.object_time)\n if (ret[1] !== null){\n msg.topic = ret[1].topic + \" of the sample\"\n msg.payload = ret[1].payload\n return [msg, null]\n }\n global.set(\"object_time\", ret[0])\n payload_for_form.payload[\"object_time_end\"] = msg.payload.object_time;\n}\nreturn [{topic: \"Coordinates valid!\", payload: \"All good!\", valid: true}, payload_for_form]\n", + "outputs": 2, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 930, + "y": 620, + "wires": [ + [ + "c0ce5626.b6c5", + "9a18a4b4.178448" + ], + [ + "56d40584.eff4e4" + ] + ], + "inputLabels": [ + "Location form data" + ], + "outputLabels": [ + "Message", + "Location validated" + ] + }, + { + "id": "46eb1bf8.3dc5f4", + "type": "function", + "z": "b771c342.49603", + "name": "Net check", + "func": "var decknet = {}\nvar activation_msg = {}\n\nif (msg.payload.startsWith(\"net_decknet\")){\n decknet.enabled = true;\n}\nelse {\n decknet.enabled = false;\n}\n\nif (msg.payload.startsWith(\"net\")){\n activation_msg.payload = {\"group\":{\"show\":[\"Sample_Net_Metadata\"],\"hide\":[\"Sample_Sample_Location\",\"Sample_Culture_Date_and_Time\"]}};\n}\nelse if (msg.payload != \"culture\" && msg.payload != \"test\"){\n activation_msg.payload = {\"group\":{\"show\":[\"Sample_Sample_Location\"], \"hide\":[\"Sample_Net_Metadata\",\"Sample_Culture_Date_and_Time\"]}};\n}\n\n\nreturn [decknet, activation_msg];", + "outputs": 2, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 1080, + "y": 240, + "wires": [ + [ + "516375fd.2ed61c", + "470e382a.25691", + "fbe32ac8.ff6a38" + ], + [ + "cbb123ab.fd3428" + ] + ], + "outputLabels": [ + "decknet activation", + "group display control" + ] + }, + { + "id": "516375fd.2ed61c", + "type": "ui_text_input", + "z": "b771c342.49603", + "name": "sample_total_flowmeter_start", + "label": "Decknet flowmeter start", + "tooltip": "in L", + "group": "cf5d9f0e.d57e7", + "order": 6, + "width": 5, + "height": 1, + "passthru": false, + "mode": "text", + "delay": "300", + "topic": "sample_total_flowmeter_start", + "sendOnBlur": true, + "className": "", + "topicType": "str", + "x": 1340, + "y": 220, + "wires": [ + [ + "e9bc112c.eb75f8" + ] + ] + }, + { + "id": "470e382a.25691", + "type": "ui_text_input", + "z": "b771c342.49603", + "name": "sample_total_flowmeter_end", + "label": "Decknet flowmeter end", + "tooltip": "in L", + "group": "cf5d9f0e.d57e7", + "order": 7, + "width": 5, + "height": 1, + "passthru": false, + "mode": "text", + "delay": "300", + "topic": "sample_total_flowmeter_end", + "sendOnBlur": true, + "className": "", + "topicType": "str", + "x": 1340, + "y": 260, + "wires": [ + [ + "e9bc112c.eb75f8" + ] + ] + }, + { + "id": "fbe32ac8.ff6a38", + "type": "ui_template", + "z": "b771c342.49603", + "group": "cf5d9f0e.d57e7", + "name": "Decknet flowmeter read", + "order": 5, + "width": 10, + "height": 1, + "format": "
\n

Decknet flowmeter readings

\n

Those values are used to calculate sample_total_volume. Values are in L.

\n
\n", + "storeOutMessages": true, + "fwdInMessages": true, + "resendOnRefresh": true, + "templateScope": "local", + "x": 1330, + "y": 180, + "wires": [ + [] + ] + }, + { + "id": "f408a273.4fb538", + "type": "function", + "z": "b771c342.49603", + "name": "get sample_gear_net_opening", + "func": "if (msg.payload.sample_gear_net_opening === null){\n msg.payload = 0;\n global.set(\"sample_gear_net_opening\",msg.payload);\n}\nelse\n{\n msg.payload = msg.payload.sample_gear_net_opening;\n}\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 350, + "y": 320, + "wires": [ + [ + "e967b844.46aa48" + ] + ] + }, + { + "id": "8dff1648.82e42", + "type": "function", + "z": "b771c342.49603", + "name": "get object_depth_max", + "func": "if (msg.payload.object_depth_max === null){\n msg.payload = 0;\n global.set(\"object_depth_max\",msg.payload);\n}\nelse\n{\n msg.payload = msg.payload.object_depth_max;\n}\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 320, + "y": 240, + "wires": [ + [ + "9c7f7fc9.c8d3a" + ] + ] + }, + { + "id": "9f04c5ec.75f3d8", + "type": "function", + "z": "b771c342.49603", + "name": "get object_depth_min", + "func": "if (msg.payload.object_depth_min === null){\n msg.payload = 0;\n global.set(\"object_depth_min\",msg.payload);\n}\nelse\n{\n msg.payload = msg.payload.object_depth_min;\n}\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 320, + "y": 280, + "wires": [ + [ + "317eeeb7.8d3042" + ] + ] + }, + { + "id": "9a18a4b4.178448", + "type": "function", + "z": "b771c342.49603", + "name": "calculate sample_total_volume", + "func": "\n/*object_lat = 33.95 \nobject_lon = 118.4 \nobject_lat_end = 40.6333 \nobject_lon_end = 73.78333\nsample_gear_net_opening = 40*/\n\n// Copyright 1997 Ed Williams. All rights reserved\n// Adapted by Romain Bazile - Ocean Trotter - 01-2021\n\ndecpl=4 // Dec places of minutes output\n\nellipse = {\"name\":\"WSG84\", \"a\":6378.137/1.852, \"invf\":298.257223563}\n\nfunction ComputeDistance(lat1, lon1, lat2, lon2){\n var d,crs12,crs21\n var argacos\n var a,invf\n \n // lat and lon in radian\n lat1=(Math.PI/180)*lat1\n lat2=(Math.PI/180)*lat2\n lon1=(Math.PI/180)*lon1\n lon2=(Math.PI/180)*lon2\n \n //alert(\"lat1=\" + lat1 + \"lon1=\" + lon1 +\"\\nlat2=\" +lat2+ \"lon2=\"+lon2)\n \n /* get distance conversion factor */\n dc=1.852 //km\n //alert(\"dc=\" +dc)\n \n //showProps(ellipse,\"ellipse\")\n \n // elliptic code\n d=crsdist_ell(lat1,-lon1,lat2,-lon2,ellipse) // ellipse uses East negative\n d=d*dc // go to physical units\n \n //alert(\"d=\"+d+\" crs12=\"+crs12+\" crs21=\"+crs21)\n return d\n}\n\nfunction crsdist(lat1,lon1,lat2,lon2){ // radian args\n /* compute course and distance (spherical) */\n if ((lat1+lat2===0) && (Math.abs(lon1-lon2)==Math.PI) && \n (Math.abs(lat1) != (Math.PI/180)*90)){\t\n \talert(\"Course between antipodal points is undefined\")\n }\n \n d = Math.acos(Math.sin(lat1)*Math.sin(lat2)+Math.cos(lat1)*Math.cos(lat2)*Math.cos(lon1-lon2))\n return d\n}\n\nfunction crsdist_ell(glat1,glon1,glat2,glon2,ellipse){\n // glat1 initial geodetic latitude in radians N positive \n // glon1 initial geodetic longitude in radians E positive \n // glat2 final geodetic latitude in radians N positive \n // glon2 final geodetic longitude in radians E positive \n a=ellipse.a\n f=1/ellipse.invf\n //alert(\"a=\"+a+\" f=\"+f)\n var r, tu1, tu2, cu1, su1, cu2, s1, b1, f1\n var x, sx, cx, sy, cy,y, sa, c2a, cz, e, c, d\n var EPS= 0.00000000005\n var faz, baz, s\n var iter=1\n var MAXITER=100\n if ((glat1+glat2===0) && (Math.abs(glon1-glon2)==Math.PI)){\n alert(\"Course and distance between antipodal points is undefined\")\n glat1=glat1+0.00001 // allow algorithm to complete\n }\n if (glat1==glat2 && (glon1==glon2 || Math.abs(Math.abs(glon1-glon2)-2*Math.PI) < EPS)){\n alert(\"Points 1 and 2 are identical- course undefined\")\n out=new MakeArray(0)\n out.d=0\n out.crs12=0\n out.crs21=Math.PI\n return out\n }\n r = 1 - f\n tu1 = r * Math.tan (glat1)\n tu2 = r * Math.tan (glat2)\n cu1 = 1 / Math.sqrt (1 + tu1 * tu1)\n su1 = cu1 * tu1\n cu2 = 1 / Math.sqrt (1 + tu2 * tu2)\n s1 = cu1 * cu2\n b1 = s1 * tu2\n f1 = b1 * tu1\n x = glon2 - glon1\n d = x + 1 // force one pass\n while ((Math.abs(d - x) > EPS) && (iter < MAXITER))\n {\n iter=iter+1\n sx = Math.sin (x)\n // alert(\"sx=\"+sx)\n cx = Math.cos (x)\n tu1 = cu2 * sx\n tu2 = b1 - su1 * cu2 * cx\n sy = Math.sqrt(tu1 * tu1 + tu2 * tu2)\n cy = s1 * cx + f1\n y = atan2 (sy, cy)\n sa = s1 * sx / sy\n c2a = 1 - sa * sa\n cz = f1 + f1\n if (c2a > 0)\n cz = cy - cz / c2a\n e = cz * cz * 2 - 1\n c = ((-3 * c2a + 4) * f + 4) * c2a * f / 16\n d = x\n x = ((e * cy * c + cz) * sy * c + y) * sa\n x = (1 - c) * x * f + glon2 - glon1\n }\n x = Math.sqrt ((1 / (r * r) - 1) * c2a + 1)\n x +=1\n x = (x - 2) / x\n c = 1 - x\n c = (x * x / 4 + 1) / c\n d = (0.375 * x * x - 1) * x\n x = e * cy\n d = ((((sy*sy*4-3)*(1-e-e)*cz*d/6-x)*d/4+cz)*sy*d+y)*c*a*r\n if (Math.abs(iter-MAXITER)0) && (y>=0)){ out= Math.atan(y/x)}\n if ((x >0) && (y<0)) { out= Math.atan(y/x)+2*Math.PI}\n if ((x===0) && (y>0)) { out= Math.PI/2}\n if ((x===0) && (y<0)) { out= 3*Math.PI/2} \n if ((x===0) && (y===0)) {\n alert(\"atan2(0,0) undefined\")\n out= 0\n } \n return out\n}\n\nfunction showProps(obj,objName){\n var result=\"\"\n for (var i in obj){\n result +=objName + \".\" + i + \" = \" + obj[i] + \"\\n\"\n }\n alert(result)\n}\n\n\nif (msg.valid){\n msg.topic=\"sample_total_volume\"\n \n var object_lat_end = global.get(\"object_lat_end\")\n var object_lon_end = global.get(\"object_lon_end\")\n var sample_sampling_gear = global.get(\"sample_sampling_gear\")\n \n if (sample_sampling_gear.startsWith(\"net\") && sample_sampling_gear != \"net_decknet\") {\n if (!(isNaN(object_lat_end) && isNaN(object_lon_end))){\n var object_lat = global.get(\"object_lat\")\n var object_lon = global.get(\"object_lon\")\n var sample_gear_net_opening = global.get(\"sample_gear_net_opening\");\n\n distance_km = ComputeDistance(object_lat, object_lon, object_lat_end, object_lon_end)\n\n sample_total_volume = distance_km*(Math.PI*(sample_gear_net_opening/2)*(sample_gear_net_opening/2)) // liters\n sample_total_volume = Math.round(sample_total_volume + Number.EPSILON)\n msg.payload = sample_total_volume\n return msg\n }\n }\n}", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 930, + "y": 760, + "wires": [ + [ + "4f6afc5a.81e454" + ] + ] + }, + { + "id": "4fb4e0ad.c417c", + "type": "ui_text", + "z": "b771c342.49603", + "group": "fc5e4e6f.5b1c8", + "order": 6, + "width": 5, + "height": 1, + "name": "Latitude", + "label": "Latitude", + "format": "{{msg.payload.lat.deg}}°{{msg.payload.lat.min}}'{{msg.payload.lat.sec}}{{msg.payload.lat.dir}}", + "layout": "col-center", + "x": 700, + "y": 1120, + "wires": [] + }, + { + "id": "8d2b5026.13e6e8", + "type": "ui_text", + "z": "b771c342.49603", + "group": "fc5e4e6f.5b1c8", + "order": 7, + "width": 5, + "height": 1, + "name": "Longitude", + "label": "Longitude", + "format": "{{msg.payload.lon.deg}}°{{msg.payload.lon.min}}'{{msg.payload.lon.sec}}{{msg.payload.lon.dir}}", + "layout": "col-center", + "x": 700, + "y": 1160, + "wires": [] + }, + { + "id": "258b4562.9f778a", + "type": "function", + "z": "b771c342.49603", + "name": "Convert DD to DMS", + "func": "function ConvertDDToDMS(D, lng){\n // from https://stackoverflow.com/a/5786281/2108279\n return {\n dir : D<0?lng?'W':'S':lng?'E':'N',\n deg : 0|(D<0?D=-D:D),\n min : 0|D%1*60,\n sec :(0|D*60%1*6000)/100\n };\n}\n\nmsg.payload = {\n \"lat\":ConvertDDToDMS(msg.payload.lat, false),\n \"lon\":ConvertDDToDMS(msg.payload.lon, true)\n};\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "x": 490, + "y": 1140, + "wires": [ + [ + "4fb4e0ad.c417c", + "8d2b5026.13e6e8" + ] + ] + }, + { + "id": "7c4ce5f3.62dd5c", + "type": "ui_text", + "z": "b771c342.49603", + "group": "fc5e4e6f.5b1c8", + "order": 4, + "width": 2, + "height": 1, + "name": "Speed", + "label": "Speed", + "format": "{{msg.payload}} kts", + "layout": "col-center", + "x": 690, + "y": 1200, + "wires": [] + }, + { + "id": "54e37580.fdc31c", + "type": "ui_text", + "z": "b771c342.49603", + "group": "fc5e4e6f.5b1c8", + "order": 5, + "width": 2, + "height": 1, + "name": "Direction", + "label": "Direction", + "format": "{{msg.payload.track}} °", + "layout": "col-center", + "x": 700, + "y": 1240, + "wires": [] + }, + { + "id": "cc21ca16.b92928", + "type": "function", + "z": "b771c342.49603", + "name": "GPS Mode", + "func": "switch (msg.payload.mode){\n case 1:msg.payload = \"No Fix\"; break\n case 2:msg.payload = \"2D Fix\"; break\n case 3:msg.payload = \"3D Fix\"; break\n default: msg.payload = \"No info\"\n}\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "x": 470, + "y": 1080, + "wires": [ + [ + "7116e906.9f50f" + ] + ] + }, + { + "id": "4a4de52c.cf2884", + "type": "function", + "z": "b771c342.49603", + "name": "Speed conversion", + "func": "msg.payload = (0|msg.payload.speed) * 1.9438\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "x": 490, + "y": 1200, + "wires": [ + [ + "7c4ce5f3.62dd5c" + ] + ] + }, + { + "id": "35ad311f.344c76", + "type": "ui_text", + "z": "b771c342.49603", + "group": "fc5e4e6f.5b1c8", + "order": 2, + "width": 5, + "height": 1, + "name": "Time", + "label": "Time", + "format": "{{msg.payload.time}}", + "layout": "col-center", + "x": 690, + "y": 1280, + "wires": [] + }, + { + "id": "e73fd87d.d24e4", + "type": "function", + "z": "b771c342.49603", + "name": "get acq_minimum_mesh", + "func": "msg.payload = msg.payload.acq_minimum_mesh;\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 330, + "y": 360, + "wires": [ + [ + "1aad56b31b5647ce" + ] + ] + }, + { + "id": "489c8e06.cc7d6", + "type": "function", + "z": "b771c342.49603", + "name": "get acq_maximum_mesh", + "func": "msg.payload = msg.payload.acq_maximum_mesh;\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 330, + "y": 400, + "wires": [ + [ + "10eb31a2d7a6590c" + ] + ] + }, + { + "id": "73c4a14a.9b93c8", + "type": "function", + "z": "b771c342.49603", + "name": "Convert time", + "func": "msg.payload.time = msg.payload.time.replace('T', ' ');\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 470, + "y": 1280, + "wires": [ + [ + "35ad311f.344c76" + ] + ] + }, + { + "id": "58de1340.3cc354", + "type": "ui_text_input", + "z": "b771c342.49603", + "name": "sample_dilution_factor", + "label": "Concentration Factor", + "tooltip": "0.5 if diluted by two; 2 if concentrated by a factor 2", + "group": "3e1ba03d.f01d8", + "order": 13, + "width": 10, + "height": 1, + "passthru": true, + "mode": "number", + "delay": "300", + "topic": "sample_dilution_factor", + "sendOnBlur": true, + "className": "", + "topicType": "str", + "x": 640, + "y": 480, + "wires": [ + [ + "9f501f49.45645" + ] + ] + }, + { + "id": "4f6afc5a.81e454", + "type": "ui_text_input", + "z": "b771c342.49603", + "name": "sample_total_volume", + "label": "Filtered volume (in L)", + "tooltip": "Calculated or hand filled", + "group": "3e1ba03d.f01d8", + "order": 11, + "width": 0, + "height": 0, + "passthru": true, + "mode": "text", + "delay": "300", + "topic": "sample_total_volume", + "sendOnBlur": true, + "className": "", + "topicType": "str", + "x": 1220, + "y": 760, + "wires": [ + [ + "e1f2f6eb.fe1dd" + ] + ] + }, + { + "id": "e1f2f6eb.fe1dd", + "type": "function", + "z": "b771c342.49603", + "name": "set global", + "func": "global.set(msg.topic,msg.payload);", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "x": 1420, + "y": 760, + "wires": [ + [] + ] + }, + { + "id": "e9bc112c.eb75f8", + "type": "function", + "z": "b771c342.49603", + "name": "Calculate volume", + "func": "if (msg.topic == \"sample_total_flowmeter_start\"){\n context.set(\"sample_total_flowmeter_start\", msg.payload);\n}\nif (msg.topic == \"sample_total_flowmeter_end\"){\n context.set(\"sample_total_flowmeter_end\", msg.payload);\n}\n\nif (context.keys().length == 2){\n sample_total_volume = context.get(\"sample_total_flowmeter_end\") - context.get(\"sample_total_flowmeter_start\");\n msg.topic=\"sample_total_volume\"\n msg.payload=sample_total_volume\n return msg\n}\n", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "x": 1610, + "y": 240, + "wires": [ + [ + "4f6afc5a.81e454" + ] + ] + }, + { + "id": "cdd4181922eecf11", + "type": "ui_text_input", + "z": "b771c342.49603", + "name": "sample_speed_through_water", + "label": "Speed Through Water (kts)", + "tooltip": "in knots", + "group": "cf5d9f0e.d57e7", + "order": 2, + "width": 10, + "height": 1, + "passthru": true, + "mode": "number", + "delay": "300", + "topic": "sample_speed_through_water", + "sendOnBlur": true, + "className": "", + "topicType": "str", + "x": 610, + "y": 520, + "wires": [ + [ + "9f501f49.45645" + ] + ] + }, + { + "id": "1aad56b31b5647ce", + "type": "ui_text_input", + "z": "b771c342.49603", + "name": "acq_minimum_mesh", + "label": "Minimal fraction size (μm)", + "tooltip": "Net mesh pore size or minimal filtration mesh pore size", + "group": "3e1ba03d.f01d8", + "order": 7, + "width": 5, + "height": 1, + "passthru": true, + "mode": "number", + "delay": "300", + "topic": "acq_minimum_mesh", + "topicType": "str", + "x": 640, + "y": 360, + "wires": [ + [ + "9f501f49.45645" + ] + ] + }, + { + "id": "10eb31a2d7a6590c", + "type": "ui_text_input", + "z": "b771c342.49603", + "name": "acq_maximum_mesh", + "label": "Maximal fraction size (μm)", + "tooltip": "Maximal filtration mesh pore size", + "group": "3e1ba03d.f01d8", + "order": 8, + "width": 5, + "height": 1, + "passthru": true, + "mode": "number", + "delay": "300", + "topic": "acq_maximum_mesh", + "topicType": "str", + "x": 640, + "y": 400, + "wires": [ + [ + "9f501f49.45645" + ] + ] + }, + { + "id": "3ac7b631f5d8ef90", + "type": "function", + "z": "b771c342.49603", + "name": "Culture check", + "func": "var activation_msg = {}\nvar date_msg = {}\nvar timestamp=new Date().toISOString();\n\nif (msg.payload === \"culture\"){\n activation_msg.payload = {\"group\":{\"show\":[\"Sample_Culture_Date_and_Time\"],\"hide\":[\"Sample_Sample_Location\", \"Sample_Net_Metadata\"]}};\n global.set(\"object_lat\", \"-90.0000\")\n global.set(\"object_lon\", \"0.0000\")\n date_msg.payload = {\"object_date\": timestamp.split('T')[0],\n \"object_time\": timestamp.split('T')[1].split('.')[0]}\n return [activation_msg, 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"object_date", + "type": "text", + "required": true, + "rows": null + }, + { + "label": "Time (HH:MM(:SS), UTC 24h)", + "value": "object_time", + "type": "text", + "required": true, + "rows": null + } + ], + "formValue": { + "object_date": "", + "object_time": "" + }, + "payload": "", + "submit": "Validate", + "cancel": "Reset", + "topic": "culture_timestamp", + "topicType": "str", + "splitLayout": false, + "className": "", + "x": 650, + "y": 700, + "wires": [ + [ + "14658615.47c862", + "38616e738f4f615b" + ] + ] + }, + { + "id": "3318a1aaa70fc2ee", + "type": "change", + "z": "b771c342.49603", + "name": "Repopulate input fields", + "rules": [ + { + "t": "set", + "p": "payload", + "pt": "msg", + "to": "payload", + "tot": "msg" + } + ], + "action": "", + "property": "", + "from": "", + "to": "", + "reg": false, + "x": 400, + "y": 580, + "wires": [ + [ + "c33f1124.af6688" + ] + ] + }, + { + "id": "cc67c97f55a340d3", + "type": "change", + "z": "b771c342.49603", + "name": "Repopulate input 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\n \"If\n
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"fbd92986.1028c8", + "order": 3, + "width": 4, + "height": 1, + "passthru": false, + "label": "", + "tooltip": "", + "color": "", + "bgcolor": "", + "icon": "fa-angle-double-up fa-3x", + "payload": "UP", + "payloadType": "str", + "topic": "actuator/focus", + "x": 550, + "y": 760, + "wires": [ + [ + "65ad39d.b6d4d48" + ] + ] + }, + { + "id": "68962547.34a67c", + "type": "ui_text_input", + "z": "bccd1f23.87219", + "name": "pump_manual_volume", + "label": "Volume to pass (ml)", + "tooltip": "Tiny values are accepted down to 0.001mL", + "group": "707d9797.c8e798", + "order": 3, + "width": 2, + "height": 1, + "passthru": true, + "mode": "text", + "delay": "300", + "topic": "pump_manual_volume", + "sendOnBlur": true, + "className": "", + "topicType": "str", + "x": 600, + "y": 420, + "wires": [ + [ + "dc48dc42.98d18" + ] + ] + }, + { + "id": "6c792043.b6ff9", + "type": "ui_ui_control", + "z": "bccd1f23.87219", + "name": "", + "events": "change", + "x": 560, + "y": 1140, + "wires": [ + [] + ] 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"actuator/focus", + "topicType": "str", + "x": 570, + "y": 720, + "wires": [ + [ + "62030521.88317c" + ] + ] + }, + { + "id": "71f55a58.d7eaf4", + "type": "inject", + "z": "bccd1f23.87219", + "name": "Default: 500µm", + "props": [ + { + "p": "payload" + } + ], + "repeat": "", + "crontab": "", + "once": true, + "onceDelay": "0.5", + "topic": "", + "payload": "500", + "payloadType": "num", + "x": 120, + "y": 460, + "wires": [ + [ + "be33e564.029358" + ] + ] + }, + { + "id": "9a1d0e7c.2d5a1", + "type": "inject", + "z": "bccd1f23.87219", + "name": "Default: OFF", + "props": [ + { + "p": "payload" + } + ], + "repeat": "", + "crontab": "", + "once": true, + "onceDelay": 0.1, + "topic": "", + "payload": "off", + "payloadType": "str", + "x": 130, + "y": 120, + "wires": [ + [ + "f0775525.cf806" + ] + ] + }, + { + "id": "f782a471.447748", + "type": "inject", + "z": "bccd1f23.87219", + "name": "Default: 2mL/min", + "props": [ + { + "p": "payload" + } + ], + "repeat": "", + "crontab": "", + 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\n \n \n \n \n \n \n \n \n \n
\n

Sample

\n

id:

\n

project:\n

\n

ship:

\n

operator:\n

\n

sampling gear:\n

\n

concentrated volume:\n

\n

gear net opening:\n

\n

total volume filtered:\n

\n 		\n

Acquisition

\n

id:

\n

instrument:\n

\n

instrument id:\n

\n

camera:

\n

celltype: \n

\n

minimum mesh:\n

\n

maximum mesh:\n

\n

min esd: \n

\n

max esd: \n

\n

volume:

\n

magnification:\n

\n

fnumber objective:\n

\n

software: \n

\n
\n

Object

\n

latitude: \n

\n

longitude: \n

\n

latitude end:\n

\n

longitude end:\n

\n

date:

\n

time:

\n

date end:\n

\n

time end:\n

\n

depth min:\n

\n

depth max:\n

\n 		\n

Process

\n

pixel: \n

\n

id:

\n
\n
", + "storeOutMessages": false, + "fwdInMessages": false, + "resendOnRefresh": false, + "templateScope": "local", + "className": "", + "x": 1180, + "y": 380, + "wires": [ + [] + ] + }, + { + "id": "c9f510c0.7d1328", + "type": "function", + "z": "baa1e3d9.cb29d", + "name": "Image control", + "func": "// Reset the number of images taken\nflow.set('img_counter', 0);\n\nvar acq_celltype = global.get(\"acq_celltype\");\nvar acq_minimum_mesh = global.get(\"acq_minimum_mesh\");\nvar acq_maximum_mesh = global.get(\"acq_maximum_mesh\");\nvar imaging_pump_volume = global.get(\"imaging_pump_volume\");\nvar acq_id = global.get(\"acq_id\");\nvar nb_frame = global.get(\"nb_frame\");\nvar pump_direction = global.get(\"pump_direction\");\nvar sleep_before = global.get(\"sleep_before\");\nvar object_date = global.get(\"object_date\");\n\nif (acq_celltype === undefined || acq_celltype === \"\") {\n msg.topic = \"Missing entry :\";\n msg.payload = \"Type of the flowcell\";\n return [null, msg];\n} else if (acq_minimum_mesh === undefined || acq_minimum_mesh === \"\") {\n msg.topic = \"Missing entry :\";\n msg.payload = \"Lower fraction size\";\n return [null, msg];\n} else if (acq_maximum_mesh === undefined || acq_maximum_mesh === \"\") {\n msg.topic = \"Missing entry :\";\n msg.payload = \"Upper fraction size\";\n return [null, msg];\n} else if (imaging_pump_volume === undefined || imaging_pump_volume === \"\" || imaging_pump_volume === null) {\n msg.topic = \"Missing entry :\";\n msg.payload = \"Volume inbetween images\";\n return [null, msg];\n} else if (acq_id === undefined || acq_id === \"\") {\n msg.topic = \"Missing entry :\";\n msg.payload = \"Acquisition ID\";\n return [null, msg];\n} else if (nb_frame === undefined || nb_frame === \"\" || nb_frame === null) {\n msg.topic = \"Missing entry :\";\n msg.payload = \"Number of image to save\";\n return [null, msg];\n} else if (pump_direction === undefined || pump_direction === \"\" || pump_direction === null) {\n msg.topic = \"Missing entry :\";\n msg.payload = \"Pump direction\";\n return [null, msg];\n} else if (sleep_before === undefined || sleep_before === \"\" || sleep_before === null) {\n msg.topic = \"Missing entry :\";\n msg.payload = \"Delay before image\";\n return [null, msg];\n}else if (object_date === undefined || object_date === \"\" || object_date === null) {\n msg.topic = \"Missing entry :\";\n msg.payload = \"Object date\";\n return [null, msg];\n}\n\nmsg.payload = {\n \"action\": \"image\",\n \"sleep\": sleep_before,\n \"pump_direction\": pump_direction,\n \"volume\": imaging_pump_volume,\n \"nb_frame\": nb_frame,\n}\nmsg.send = true\n\nreturn [msg, null];", + "outputs": 2, + "timeout": "", + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 680, + "y": 480, + "wires": [ + [ + "52ea7d01.711034", + "40c12463.a1f84c", + "a4abb1ae.2ae418" + ], + [ + "20e0a8c8.edbeb" + ] + ] + }, + { + "id": "20e0a8c8.edbeb", + "type": "ui_toast", + "z": "baa1e3d9.cb29d", + "position": "dialog", + "displayTime": "3", + "highlight": "", + "sendall": true, + "outputs": 1, + "ok": "OK", + "cancel": "", + "raw": false, + "className": "", + "topic": "", + "name": "", + "x": 950, + "y": 560, + "wires": [ + [] + ] + }, + { + "id": "c3e50240.82aa58", + "type": "mqtt out", + "z": "baa1e3d9.cb29d", + "name": "", + "topic": "", + "qos": "", + "retain": "", + "respTopic": "", + "contentType": "", + "userProps": "", + "correl": "", + "expiry": "", + "broker": "8dc3722c.06efa8", + "x": 1150, + "y": 440, + "wires": [] + }, + { + "id": "3a4450b1.4459a8", + "type": "ui_button", + "z": "baa1e3d9.cb29d", + "name": "Stop Acquisition", + "group": "4322c187.e73e5", + "order": 11, + "width": 5, + "height": 1, + "passthru": true, + "label": "STOP ACQUISITION", + "tooltip": "", + "color": "", + "bgcolor": "#AD1625", + "className": "", + "icon": "cancel", + "payload": "{\"action\":\"stop\"}", + "payloadType": "json", + "topic": "imager/image", + "topicType": "str", + "x": 460, + "y": 520, + "wires": [ + [ + "d74210ef.edc15" + ] + ] + }, + { + "id": "d74210ef.edc15", + "type": "mqtt out", + "z": "baa1e3d9.cb29d", + "name": "", + "topic": "", + "qos": "", + "retain": "", + "broker": "8dc3722c.06efa8", + "x": 650, + "y": 520, + "wires": [] + }, + { + "id": "bb62da8a.ebc328", + "type": "ui_switch", + "z": "baa1e3d9.cb29d", + "name": "Pump direction", + "label": "Pump direction", + "tooltip": "BACKWARD / FORWARD", + "group": "4322c187.e73e5", + "order": 9, + "width": 5, + "height": 1, + "passthru": true, + "decouple": "false", + "topic": "pump_direction", + "style": "", + "onvalue": "FORWARD", + "onvalueType": "str", + "onicon": "", + "oncolor": "", + "offvalue": "BACKWARD", + "offvalueType": "str", + "officon": "", + "offcolor": "", + "x": 460, + "y": 560, + "wires": [ + [ + "6b2239f3.41fa3" + ] + ] + }, + { + "id": "52ea7d01.711034", + "type": "function", + "z": "baa1e3d9.cb29d", + "name": "Encapsulate config", + "func": "msg.payload = {\n\t\"action\": \"update_config\",\n\t\"config\": {\n \t\"description\": {\n \t\t\"sample_project\": \"Project's name\",\n \t\t\"sample_id\": \"Sample ID\",\n \t\t\"sample_uuid\": \"Sample UUID (Autogenerated)\",\n \t\t\"sample_ship\": \"Ship's name\",\n \t\t\"sample_operator\": \"Operator's name\",\n \t\t\"sample_sampling_gear\": \"Sampling gear used\",\n \t\t\"sample_concentrated_sample_volume\": \"Volume of concentrated sample, in mL\",\n \t\t\"sample_total_volume\": \"Total volume filtered by the net used, in L\",\n \t\t\"sample_dilution_factor\": \"Dilution factor of the sample, 0.5 if diluted by 2, 2 if concentrated by 2\",\n \t\t\"sample_speed_through_water\": \"Speed of the boat through water when sampling, in kts\",\n \t\t\"acq_id\": \"Acquisition ID\",\n \t\t\"acq_uuid\": \"Acquisition UUID (Autogenerated)\",\n \t\t\"acq_instrument\": \"Instrument type\",\n \t\t\"acq_instrument_id\": \"Instrument ID\",\n \t\t\"acq_celltype\": \"Flow cell dimension thickness, in µm\",\n \t\t\"acq_minimum_mesh\": \"Minimum filtration mesh size, in µm\",\n \t\t\"acq_maximum_mesh\": \"Maximum filtration mesh size, in µm\",\n \t\t\"acq_min_esd\": \"\",\n \t\t\"acq_max_esd\": \"\",\n \t\t\"acq_volume\": \"Pumped volume, in mL\",\n\t\t \"acq_imaged_volume\": \"Total imaged volume, in mL\",\n \t\t\"acq_magnification\": \"Optical magnification\",\n \t\t\"acq_fnumber_objective\": \"Focal length of the objective, in mm\",\n \t\t\"acq_camera_name\": \"Name of the camera used\",\n \t\t\"acq_nb_frame\": \"Number of picture taken\",\n \"acq_local_datetime\": \"Instrument local datetime\",\n \"acq_camera_resolution\": \"Resolution of the images\",\n \"acq_camera_iso\": \"ISO Number of the images\",\n \"acq_camera_shutter_speed\": \"Shutter speed of the images, in µs\",\n \"acq_software\": \"Software version number\",\n \t\t\"object_date\": \"Sample collection date (or beginning if using a net)\",\n \t\t\"object_time\": \"Sample collection time (or beginning if using a net)\",\n \t\t\"object_lat\": \"Sample collection latitude (or beginning if using a net)\",\n \t\t\"object_lon\": \"Sample collection longitude (or beginning if using a net)\",\n \t\t\"object_depth_min\": \"Sample collection minimal depth, in m\",\n \t\t\"object_depth_max\": \"Sample collection maximum depth, in m\",\n \t\t\"process_pixel\": \"Pixel imaging resolution, in µm/pixel\",\n \t\t\"process_datetime\": \"Segmentation timestamp\",\n \t\t\"process_id\": \"Segmentation ID\",\n \t\t\"process_uuid\": \"Segmentation UUID (Autogenerated)\",\n \t\t\"process_source\": \"Code source link of the executed code\",\n \t\t\"process_commit\": \"Version reference of the executed code\",\n \t\t\"sample_gear_net_opening\": \"Sample mouth opening dimension, in mm\",\n \t\t\"object_date_end\": \"Sample end collection date when using a net\",\n \t\t\"object_time_end\": \"Sample end collection time when using a net\",\n \t\t\"object_lat_end\": \"Sample end collection latitude when using a net\",\n \t\t\"object_lon_end\": \"Sample end collection longitude when using a net\",\n \t},\n\t\t\"sample_project\": global.get(\"sample_project\"),\n\t\t\"sample_id\": global.get(\"sample_project\") + \"_\" + global.get(\"sample_id\"),\n\t\t\"sample_ship\": global.get(\"sample_ship\"),\n\t\t\"sample_operator\": global.get(\"sample_operator\"),\n\t\t\"sample_sampling_gear\": global.get(\"sample_sampling_gear\"),\n\t\t\"sample_concentrated_sample_volume\": global.get(\"sample_concentrated_sample_volume\"),\n\t\t\"sample_total_volume\": global.get(\"sample_total_volume\"),\n\t\t\"sample_dilution_factor\": global.get(\"sample_dilution_factor\"),\n\t\t\"sample_speed_through_water\": global.get(\"sample_speed_through_water\"),\n\n\t\t\"acq_id\": global.get(\"sample_project\") + \"_\" + global.get(\"sample_id\")+ \"_\" + global.get(\"acq_id\"),\n\t\t\"acq_instrument\": global.get(\"acq_instrument\"),\n\t\t\"acq_instrument_id\": global.get(\"acq_instrument_id\"),\n\t\t\"acq_celltype\": global.get(\"acq_celltype\"),\n\t\t\"acq_minimum_mesh\": global.get(\"acq_minimum_mesh\"),\n\t\t\"acq_maximum_mesh\": global.get(\"acq_maximum_mesh\"),\n\t\t\"acq_min_esd\": global.get(\"acq_min_esd\"),\n\t\t\"acq_max_esd\": global.get(\"acq_max_esd\"),\n\t\t\"acq_volume\": global.get(\"acq_volume\"),\n\t\t\"acq_imaged_volume\": global.get(\"acq_imaged_volume\"),\n\t\t\"acq_magnification\": global.get(\"acq_magnification\"),\n\t\t\"acq_fnumber_objective\": global.get(\"acq_fnumber_objective\"),\n\t\t\"acq_camera\": global.get(\"acq_camera\"),\n\t\t\"acq_nb_frame\": global.get(\"nb_frame\"),\n\t\t\"acq_software\": global.get(\"acq_software\"),\n\n\t\t\"object_date\": global.get(\"object_date\"),\n\t\t\"object_time\": global.get(\"object_time\"),\n\t\t\"object_lat\": global.get(\"object_lat\"),\n\t\t\"object_lon\": global.get(\"object_lon\"),\n\t\t\"object_depth_min\": global.get(\"object_depth_min\"),\n\t\t\"object_depth_max\": global.get(\"object_depth_max\"),\n\n\t\t\"process_pixel\": global.get(\"process_pixel\"),\n\t\t\"process_source\": global.get(\"process_source\"),\n\t\t\"process_commit\": global.get(\"process_commit\")\n\t}\n};\n\nif (msg.payload.config.sample_sampling_gear.startsWith(\"net\")) {\n\tmsg.payload.config[\"sample_gear_net_opening\"] = global.get(\"sample_gear_net_opening\")\n\tmsg.payload.config[\"object_date_end\"] = global.get(\"object_date_end\")\n\tmsg.payload.config[\"object_time_end\"] = global.get(\"object_time_end\")\n\tmsg.payload.config[\"object_lat_end\"] = global.get(\"object_lat_end\")\n\tmsg.payload.config[\"object_lon_end\"] = global.get(\"object_lon_end\")\n}\n\nif ( msg.send == true){\n\treturn [msg, msg]\n}\nelse{\n\treturn [msg, null]\n}", + "outputs": 2, + "timeout": "", + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 910, + "y": 440, + "wires": [ + [ + "29be525e.0c87fe" + ], + [ + "c3e50240.82aa58" + ] + ] + }, + { + "id": "40c12463.a1f84c", + "type": "delay", + "z": "baa1e3d9.cb29d", + "name": "", + "pauseType": "delay", + "timeout": "1", + "timeoutUnits": "seconds", + "rate": "1", + "nbRateUnits": "1", + "rateUnits": "second", + "randomFirst": "1", + "randomLast": "5", + "randomUnits": "seconds", + "drop": false, + "outputs": 1, + "x": 940, + "y": 480, + "wires": [ + [ + "c3e50240.82aa58" + ] + ] + }, + { + "id": "4d1b02cb.83b51c", + "type": "ui_button", + "z": "baa1e3d9.cb29d", + "name": "", + "group": "4322c187.e73e5", + "order": 10, + "width": 5, + "height": 1, + "passthru": false, + "label": "Update config", + "tooltip": "", + "color": "", + "bgcolor": "", + "className": "", + "icon": "save", + "payload": "", + "payloadType": "str", + "topic": "imager/image", + "topicType": "str", + "x": 680, + "y": 440, + "wires": [ + [ + "52ea7d01.711034" + ] + ] + }, + { + "id": "5921d0d0.a3d568", + "type": "subflow:1c24ad9c.bebec2", + "z": "baa1e3d9.cb29d", + "name": "", + "env": [], + "x": 110, + "y": 220, + "wires": [ + [ + "f3658d30.b8448", + "de2c90cf.b73b08", + "4be09c97f86897d9", + "f573206abefa9518", + "f948151ab4031df4", + "5e3dec55.881074", + "d3ca8847.4d1ae" + ] + ] + }, + { + "id": "f3658d30.b8448", + "type": "function", + "z": "baa1e3d9.cb29d", + "name": "get acq_id", + "func": "msg.payload = msg.payload.acq_id;\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "x": 330, + "y": 240, + "wires": [ + [ + "6b34c456.83178c" + ] + ] + }, + { + "id": "de2c90cf.b73b08", + "type": "function", + "z": "baa1e3d9.cb29d", + "name": "get acq_celltype", + "func": "msg.topic = 'acq_celltype';\nmsg.payload = msg.payload.acq_celltype;\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 340, + "y": 80, + "wires": [ + [ + "cc0ca68b.4263a8" + ] + ] + }, + { + "id": "5e3dec55.881074", + "type": "function", + "z": "baa1e3d9.cb29d", + "name": "get acq_minimum_mesh", + "func": "msg.payload = msg.payload.acq_minimum_mesh;\nreturn msg;", + "outputs": 1, + "noerr": 0, + "x": 370, + "y": 160, + "wires": [ + [ + "f59a2f0d.5e9af" + ] + ] + }, + { + "id": "d3ca8847.4d1ae", + "type": "function", + "z": "baa1e3d9.cb29d", + "name": "get acq_maximum_mesh", + "func": "msg.payload = msg.payload.acq_maximum_mesh;\nreturn msg;", + "outputs": 1, + "noerr": 0, + "x": 370, + "y": 200, + "wires": [ + [ + "6008a8bb.259f08" + ] + ] + }, + { + "id": "b402f719.55bc98", + "type": "inject", + "z": "baa1e3d9.cb29d", + "name": "Default: FORWARD", + "props": [ + { + "p": "payload" + }, + { + "p": "topic", + "vt": "str" + } + ], + "repeat": "", + "crontab": "", + "once": true, + "onceDelay": 0.1, + "topic": "pump_direction", + "payload": "FORWARD", + "payloadType": "str", "x": 220, + "y": 560, + "wires": [ + [ + "bb62da8a.ebc328" + ] + ] + }, + { + "id": "6b2239f3.41fa3", + "type": "function", + "z": "baa1e3d9.cb29d", + "name": "set global", + "func": "global.set(msg.topic, msg.payload);", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "x": 660, + "y": 560, + "wires": [ + [] + ] + }, + { + "id": "51b4d0df.d70a88", + "type": "ui_text_input", + "z": "baa1e3d9.cb29d", + "name": "nb_frame", + "label": "Number of images to acquire", + "tooltip": "", + "group": "4322c187.e73e5", + "order": 2, + "width": 5, + "height": 1, + "passthru": true, + "mode": "number", + "delay": 300, + "topic": "nb_frame", + "sendOnBlur": true, + "className": "", + "topicType": "str", + "x": 680, + "y": 280, + "wires": [ + [ + "fb887036.12429", + "67091ac0.8f9f6c", + "99b11fe4.2795d" + ] + ] + }, + { + "id": "999065ca.27edb8", + "type": "switch", + "z": "baa1e3d9.cb29d", + "name": "topic filter", + "property": "topic", + "propertyType": "msg", + "rules": [ + { + "t": "eq", + "v": "status/pump", + "vt": "str" + }, + { + "t": "eq", + "v": "status/focus", + "vt": "str" + }, + { + "t": "eq", + "v": "status/imager", + "vt": "str" + } + ], + "checkall": "true", + "repair": false, + "outputs": 3, + "x": 320, + "y": 800, + "wires": [ + [ + "a46a1e7f.88a92", + "6742014e.1bb238" + ], + [ + "c516d9ea.f7f6e", + "6742014e.1bb238" + ], + [ + "307c851e.fb0f7a", + "2b9d6988.d84836" + ] + ] + }, + { + "id": "2b009bd7.c07004", + "type": "ui_text", + "z": "baa1e3d9.cb29d", + "group": "70de8209.68416c", + "order": 3, + "width": 10, + "height": 2, + "name": "imager", + "label": "Imager status:", + "format": "{{msg.payload.status}}", + "layout": "col-center", + "x": 770, + "y": 740, + "wires": [] + }, + { + "id": "c516d9ea.f7f6e", + "type": "ui_text", + "z": "baa1e3d9.cb29d", + "group": "70de8209.68416c", + "order": 1, + "width": 5, + "height": 1, + "name": "focus", + "label": "Focus status:", + "format": "{{msg.payload.status}}", + "layout": "col-center", + "x": 770, + "y": 700, + "wires": [] + }, + { + "id": "a46a1e7f.88a92", + "type": "ui_text", + "z": "baa1e3d9.cb29d", + "group": "70de8209.68416c", + "order": 2, + "width": 5, + "height": 1, + "name": "pump", + "label": "Pump status:", + "format": "{{msg.payload.status}}", + "layout": "col-center", + "x": 770, + "y": 660, + "wires": [] + }, + { + "id": "bb628f8d.98f108", + "type": "link in", + "z": "baa1e3d9.cb29d", + "name": "Status for fluidic module", + "links": [ + "58f2e0f.4e8b12" + ], + "x": 175, + "y": 800, + "wires": [ + [ + "999065ca.27edb8" + ] + ] + }, + { + "id": "307c851e.fb0f7a", + "type": "switch", + "z": "baa1e3d9.cb29d", + "name": "Imaging state", + "property": "payload", + "propertyType": "msg", + "rules": [ + { + "t": "jsonata_exp", + "v": "$contains(msg.payload.status, \"jpg\")\t", + "vt": "jsonata" + }, + { + "t": "else" + } + ], + "checkall": "false", + "repair": false, + "outputs": 2, + "x": 540, + "y": 880, + "wires": [ + [ + "db8e3dde.44efb8" + ], + [ + "6742014e.1bb238" + ] + ] + }, + { + "id": "db8e3dde.44efb8", + "type": "function", + "z": "baa1e3d9.cb29d", + "name": "img_counter", + "func": "img_counter=flow.get('img_counter')\nif (img_counter === undefined || img_counter === \"\"){\n img_counter = 0\n}\nimg_counter=img_counter+1\nflow.set('img_counter',img_counter)\nmsg.payload = img_counter\nmsg.payload = (100 * img_counter/global.get('nb_frame')).toFixed(2)\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 770, + "y": 860, + "wires": [ + [ + "1a2e721a.f5e876" + ] + ] + }, + { + "id": "59164d65.e7993c", + "type": "ui_toast", + "z": "baa1e3d9.cb29d", + "position": "top right", + "displayTime": "5", + "highlight": "", + "sendall": true, + "outputs": 0, + "ok": "OK", + "cancel": "", + "raw": false, + "topic": "", + "name": "", + "x": 1260, + "y": 900, + "wires": [] + }, + { + "id": "8c7348aa.1962e8", + "type": "template", + "z": "baa1e3d9.cb29d", + "name": "Create sentence", + "field": "payload", + "fieldType": "msg", + "format": "handlebars", + "syntax": "mustache", + "template": "The {{topic}} is {{payload.status}}", + "output": "str", + "x": 1050, + "y": 900, + "wires": [ + [ + "59164d65.e7993c" + ] + ] + }, + { + "id": "6742014e.1bb238", + "type": "change", + "z": "baa1e3d9.cb29d", + "name": "Remove high-level topic", + "rules": [ + { + "t": "change", + "p": "topic", + "pt": "msg", + "from": "status/", + "fromt": "str", + "to": "", + "tot": "str" + } + ], + "action": "", + "property": "", + "from": "", + "to": "", + "reg": false, + "x": 810, + "y": 900, + "wires": [ + [ + "8c7348aa.1962e8" + ] + ] + }, + { + "id": "1a2e721a.f5e876", + "type": "ui_gauge", + "z": "baa1e3d9.cb29d", + "name": "progress donut", + "group": "b5d61bc7.54fe48", + "order": 3, + "width": 6, + "height": 3, + "gtype": "donut", + "title": "", + "label": "%", + "format": "{{value}}", + "min": 0, + "max": "100", + "colors": [ + "#ffa83f", + "#e6ff02", + "#00dfe9" + ], + "seg1": "50", + "seg2": "75", + "x": 1260, + "y": 860, + "wires": [] + }, + { + "id": "9bd72495.a8a098", + "type": "ui_text", + "z": "baa1e3d9.cb29d", + "group": "4322c187.e73e5", + "order": 5, + "width": 5, + "height": 1, + "name": "Total imaged volume", + "label": "Total imaged volume", + "format": "{{msg.payload}}", + "layout": "col-center", + "x": 1200, + "y": 140, + "wires": [] + }, + { + "id": "99b11fe4.2795d", + "type": "function", + "z": "baa1e3d9.cb29d", + "name": "imaged volume calc", + "func": "camera = global.get(\"acq_camera\");\ncell = global.get(\"acq_celltype\");\nnb_frame = global.get(\"nb_frame\");\nprocess_pixel = global.get(\"process_pixel\");\n\nvar volume = 0\nif (camera == \"HQ Camera\"){\n volume = nb_frame * (process_pixel*4056*process_pixel*3040*cell/1000000000) / 1000;\n}\nelse if (camera == \"Camera v2.1\"){\n volume = nb_frame * (process_pixel*3280*process_pixel*2464*cell/1000000000) / 1000;\n}\nelse{\n msg.payload = \"The camera is not known to this system\";\n return msg;\n}\n\nglobal.set(\"acq_imaged_volume\", volume.toFixed(4))\n\nmsg.payload = volume.toFixed(2) + \" mL\"\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 960, + "y": 140, + "wires": [ + [ + "9bd72495.a8a098" + ] + ], + "info": "### Focusing\n##### focus.py `nb_step` `orientation`\n\n- `nb_step` : **integer** (from 1 to 100000) - number of step to perform by the stage (about 31um/step)\n- `orientation` : **string** - orientation of the focus either `up` or `down`\n\nExample:\n\n python3.7 $HOME/PlanktoScope/scripts/focus.py 650 up\n" + }, + { + "id": "8e16aa2f.e40398", + "type": "ui_text", + "z": "baa1e3d9.cb29d", + "group": "4322c187.e73e5", + "order": 7, + "width": 5, + "height": 1, + "name": "Total pumped volume", + "label": "Total pumped volume", + "format": "{{msg.payload}} mL", + "layout": "col-center", + "x": 1200, + "y": 300, + "wires": [] + }, + { + "id": "67091ac0.8f9f6c", + "type": "function", + "z": "baa1e3d9.cb29d", + "name": "acq_volume calc", + "func": "var imaging_pump_volume = global.get(\"imaging_pump_volume\");\nvar nb_frame = global.get(\"nb_frame\");\nvar acq_volume = 0\n\nacq_volume = (Number(nb_frame)*Number(imaging_pump_volume)).toFixed(2)\nglobal.set(\"acq_volume\", acq_volume)\n\nmsg.payload = acq_volume\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "x": 950, + "y": 300, + "wires": [ + [ + "8e16aa2f.e40398" + ] + ], + "info": "### Focusing\n##### focus.py `nb_step` `orientation`\n\n- `nb_step` : **integer** (from 1 to 100000) - number of step to perform by the stage (about 31um/step)\n- `orientation` : **string** - orientation of the focus either `up` or `down`\n\nExample:\n\n python3.7 $HOME/PlanktoScope/scripts/focus.py 650 up\n" + }, + { + "id": "2b9d6988.d84836", + "type": "switch", + "z": "baa1e3d9.cb29d", + "name": "", + "property": "payload", + "propertyType": "msg", + "rules": [ + { + "t": "hask", + "v": "status", + "vt": "str" + }, + { + "t": "hask", + "v": "camera_name", + "vt": "str" + } + ], + "checkall": "true", + "repair": false, + "outputs": 2, + "x": 650, + "y": 760, + "wires": [ + [ + "2b009bd7.c07004" + ], + [ + "3bbb756a.84190a" + ] + ] + }, + { + "id": "3bbb756a.84190a", + "type": "function", + "z": "baa1e3d9.cb29d", + "name": "set camera name", + "func": "global.set(\"acq_camera\", msg.payload.camera_name);\n\nmsg.payload = msg.payload.camera_name;\n\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "x": 810, + "y": 780, + "wires": [ + [ + "559a8085.1d6b9" + ] + ] + }, + { + "id": "559a8085.1d6b9", + "type": "link out", + "z": "baa1e3d9.cb29d", + "name": "Camera Name", + "links": [ + "30067f35.532f2", + "572a6daa.6004c4" + ], + "x": 965, + "y": 780, + "wires": [] + }, + { + "id": "49ea1123.ee1768", + "type": "ui_numeric", + "z": "baa1e3d9.cb29d", + "name": "sleep_before", + "label": "Delay to stabilize image (s)", + "tooltip": "Happens before every capture", + "group": "4322c187.e73e5", + "order": 4, + "width": 5, + "height": 1, + "wrap": false, + "passthru": true, + "topic": "sleep_before", + "topicType": "str", + "format": "{{value}}", + "min": "0.1", + "max": "5", + "step": "0.1", + "className": "", + "x": 670, + "y": 120, + "wires": [ + [ + "fb887036.12429" + ] + ] + }, + { + "id": "572a6daa.6004c4", + "type": "link in", + "z": "baa1e3d9.cb29d", + "name": "", + "links": [ + "559a8085.1d6b9" + ], + "x": 795, + "y": 140, + "wires": [ + [ + "99b11fe4.2795d" + ] + ] + }, + { + "id": "8032ea50.1b57f", + "type": "ui_template", + "z": "baa1e3d9.cb29d", + "group": "b5d61bc7.54fe48", + "name": "progress header", + "order": 1, + "width": 0, + "height": 0, + "format": "

Capture progress

", + "storeOutMessages": false, + "fwdInMessages": false, + "resendOnRefresh": false, + "templateScope": "local", + "x": 1260, + "y": 820, + "wires": [ + [] + ] + }, + { + "id": "a4abb1ae.2ae418", + "type": "subflow:1c24ad9c.bebec2", + "z": "baa1e3d9.cb29d", + "name": "", + "env": [], + "x": 930, + "y": 520, + "wires": [ + [] + ] + }, + { + "id": "4be09c97f86897d9", + "type": "function", + "z": "baa1e3d9.cb29d", + "name": "get nb_frame", + "func": "msg.payload = msg.payload.nb_frame;\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 330, + "y": 280, + "wires": [ + [ + "51b4d0df.d70a88" + ] + ] + }, + { + "id": "f573206abefa9518", + "type": "function", + "z": "baa1e3d9.cb29d", + "name": "get imaging_pump_volume", + "func": "msg.payload = msg.payload.imaging_pump_volume;\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 380, + "y": 320, + "wires": [ + [ + "e1acc6c599033114" + ] + ] + }, + { + "id": "f948151ab4031df4", + "type": "function", + "z": "baa1e3d9.cb29d", + "name": "get sleep_before", + "func": "msg.payload = msg.payload.sleep_before;\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 340, + "y": 120, + "wires": [ + [ + "49ea1123.ee1768" + ] + ] + }, + { + "id": "ad153212312f0347", + "type": "ui_ui_control", + "z": "baa1e3d9.cb29d", + "name": "onTab", + "events": "all", + "x": 330, + "y": 380, + "wires": [ + [ + "9b69ea945b587192" + ] + ] + }, + { + "id": "9b69ea945b587192", + "type": "function", + "z": "baa1e3d9.cb29d", + "name": "check tab", + "func": "if (msg.name == \"Fluidic Acquisition\"){\n return { \"topic\": \"imager/ image\" }\n}", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 480, + "y": 380, + "wires": [ + [ + "52ea7d01.711034" + ] + ], + "outputLabels": [ + "interface" + ] + }, + { + "id": "e1acc6c599033114", + "type": "ui_text_input", + "z": "baa1e3d9.cb29d", + "name": "imaging_pump_volume", + "label": "Pumped volume (mL)", + "tooltip": "between frames", + "group": "4322c187.e73e5", + "order": 3, + "width": 0, + "height": 0, + "passthru": true, + "mode": "text", + "delay": 300, + "topic": "imaging_pump_volume", + "sendOnBlur": true, + "className": "", + "topicType": "str", + "x": 630, + "y": 320, + "wires": [ + [ + "fb887036.12429", + "67091ac0.8f9f6c" + ] + ] + }, + { + "id": "f4caa15e2bbfd6e7", + "type": "ui_template", + "z": "baa1e3d9.cb29d", + "group": "4322c187.e73e5", + "name": "Start Acquisition", + "order": 13, + "width": "5", + "height": "1", + "format": "\n\n", + "storeOutMessages": false, + "fwdInMessages": false, + "resendOnRefresh": false, + "templateScope": "local", + "className": "", + "x": 460, + "y": 480, + "wires": [ + [ + "c9f510c0.7d1328" + ] + ] + }, + { + "id": "9d6abe67.6bb3d", + "type": "ui_button", + "z": "cb95299c.2817c8", + "name": "", + "group": "64903b47.4034e4", + "order": 1, + "width": 0, + "height": 0, + "passthru": false, + "label": "Home", + "tooltip": "", + "color": "", + "bgcolor": "", + "icon": "home", + "payload": "{\"tab\":\"Home\"}", + "payloadType": "json", + "topic": "", + "x": 430, + "y": 600, + "wires": [ + [ + "f0fb77cf.8f1c28" + ] + ] + }, + { + "id": "f0fb77cf.8f1c28", + "type": "ui_ui_control", + "z": "cb95299c.2817c8", + "name": "", + "events": "change", + "x": 740, + "y": 600, + "wires": [ + [] + ] + }, + { + "id": "8ec68b82.17e3d8", + "type": "ui_button", + "z": "cb95299c.2817c8", + "name": "Start segmentation", + "group": "abeb6dad.635a2", + "order": 10, + "width": 5, + "height": 1, + "passthru": false, + "label": "Start segmentation", + "tooltip": "", + "color": "", + "bgcolor": "", + "icon": "", + "payload": "{\"action\":\"segment\"}", + "payloadType": "json", + "topic": "segmenter/segment", + "x": 370, + "y": 460, + "wires": [ + [ + "33c28dc1.238002", + "c72a1064.1ec388" + ] + ] + }, + { + "id": "27be7971.b3fbce", + "type": "ui_button", + "z": "cb95299c.2817c8", + "d": true, + "name": "Stop segmentation", + "group": "abeb6dad.635a2", + "order": 12, + "width": 4, + "height": 1, + "passthru": true, + "label": "Stop segmentation", + "tooltip": "", + "color": "", + "bgcolor": "#AD1625", + "icon": "", + "payload": "{\"action\":\"stop\"}", + "payloadType": "json", + "topic": "segmenter/segment", + "x": 370, + "y": 520, + "wires": [ + [ + "16f3cef4.0acac9" + ] + ] + }, + { + "id": "16f3cef4.0acac9", + "type": "mqtt out", + "z": "cb95299c.2817c8", + "name": "", + "topic": "", + "qos": "", + "retain": "", + "broker": "8dc3722c.06efa8", + "x": 850, + "y": 520, + "wires": [] + }, + { + "id": "8f3788f6.ddcf98", + "type": "function", + "z": "cb95299c.2817c8", + "name": "obj_counter", + "func": "obj_counter = flow.get('obj_counter')\nobj_counter = obj_counter + 1\nflow.set('obj_counter', obj_counter)\nmsg.payload = obj_counter\nmsg.topic = \"object count\"\nreturn msg", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "x": 810, + "y": 800, + "wires": [ + [ + "fa3b7929.ac7da8", + "9d53dbe2.dbffe8" + ] + ] + }, + { + "id": "aa38dbbc.cf0a9", + "type": "switch", + "z": "cb95299c.2817c8", + "name": "Segmenter", + "property": "topic", + "propertyType": "msg", + "rules": [ + { + "t": "eq", + "v": "status/segmenter", + "vt": "str" + }, + { + "t": "eq", + "v": "status/segmenter/name", + "vt": "str" + }, + { + "t": "eq", + "v": "status/segmenter/object_id", + "vt": "str" + }, + { + "t": "eq", + "v": "status/segmenter/metric", + "vt": "str" + } + ], + "checkall": "true", + "repair": false, + "outputs": 4, + "x": 490, + "y": 740, + "wires": [ + [ + "b9a23b91.93638", + "6919465f.332e5" + ], + [ + "49af3d24.1799e4" + ], + [ + "8f3788f6.ddcf98" + ], + [] + ] + }, + { + "id": "9d53dbe2.dbffe8", + "type": "ui_chart", + "z": "cb95299c.2817c8", + "name": "counter graph", + "group": "46be9c86.dea684", + "order": 7, + "width": 10, + "height": 2, + "label": "", + "chartType": "horizontalBar", + "legend": "false", + "xformat": "HH:mm:ss", + "interpolate": "linear", + "nodata": "Objects count will be shown here once the segmentation is started", + "dot": false, + "ymin": "", + "ymax": "", + "removeOlder": 1, + "removeOlderPoints": "", + "removeOlderUnit": "3600", + "cutout": 0, + "useOneColor": true, + "useUTC": false, + "colors": [ + "#1f77b4", + "#aec7e8", + "#ff7f0e", + "#2ca02c", + "#98df8a", + "#d62728", + "#ff9896", + "#9467bd", + "#c5b0d5" + ], + "outputs": 1, + "x": 1340, + "y": 840, + "wires": [ + [] + ] + }, + { + "id": "a4f0f0d1.3aca88", + "type": "ui_toast", + "z": "cb95299c.2817c8", + "position": "top right", + "displayTime": "5", + "highlight": "", + "sendall": true, + "outputs": 0, + "ok": "OK", + "cancel": "", + "raw": false, + "topic": "", + "name": "", + "x": 1340, + "y": 680, + "wires": [] + }, + { + "id": "49af3d24.1799e4", + "type": "debug", + "z": "cb95299c.2817c8", + "name": "segmentation name", + "active": true, + "tosidebar": true, + "console": false, + "tostatus": false, + "complete": "true", + "targetType": "full", + "statusVal": "", + "statusType": "auto", + "x": 830, + "y": 760, + "wires": [] + }, + { + "id": "7088a5be.0c79a4", + "type": "template", + "z": "cb95299c.2817c8", + "name": "Create sentence", + "field": "payload", + "fieldType": "msg", + "format": "handlebars", + "syntax": "mustache", + "template": "The {{topic}} is {{payload.status}}", + "output": "str", + "x": 1100, + "y": 680, + "wires": [ + [ + "a4f0f0d1.3aca88" + ] + ] + }, + { + "id": "b9a23b91.93638", + "type": "change", + "z": "cb95299c.2817c8", + "name": "Remove high-level topic", + "rules": [ + { + "t": "change", + "p": "topic", + "pt": "msg", + "from": "status/", + "fromt": "str", + "to": "", + "tot": "str" + } + ], + "action": "", + "property": "", + "from": "", + "to": "", + "reg": false, + "x": 850, + "y": 680, + "wires": [ + [ + "7088a5be.0c79a4" + ] + ] + }, + { + "id": "6919465f.332e5", + "type": "ui_text", + "z": "cb95299c.2817c8", + "group": "46be9c86.dea684", + "order": 1, + "width": 10, + "height": 1, + "name": "segmenter", + "label": "Segmenter status:", + "format": "{{msg.payload.status}}", + "layout": "row-spread", + "x": 810, + "y": 720, + "wires": [] + }, + { + "id": "fa3b7929.ac7da8", + "type": "ui_text", + "z": "cb95299c.2817c8", + "group": "46be9c86.dea684", + "order": 5, + "width": 4, + "height": 1, + "name": "counter", + "label": "", + "format": "{{msg.payload}}", + "layout": "col-center", + "x": 1320, + "y": 800, + "wires": [] + }, + { + "id": "640ece83.88cab", + "type": "inject", + "z": "cb95299c.2817c8", + "name": "Init graphs", + "props": [ + { + "p": "payload" + }, + { + "p": "topic", + "vt": "str" + } + ], + "repeat": "", + "crontab": "", + "once": true, + "onceDelay": 0.1, + "topic": "object count", + "payload": "0", + "payloadType": "num", + "x": 810, + "y": 880, + "wires": [ + [ + "4f3f7c4a.cb21c4" + ] + ] + }, + { + "id": "25867454.a8e334", + "type": "link in", + "z": "cb95299c.2817c8", + "name": "Segmenter module status", + "links": [ + "dcf5bd45.16a8d" + ], + "x": 295, + "y": 740, + "wires": [ + [ + "aa38dbbc.cf0a9" + ] + ] + }, + { + "id": "c8749cbb.55254", + "type": "function", + "z": "cb95299c.2817c8", + "name": "set global", + "func": "global.set(msg.topic, msg.payload);", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 960, + "y": 380, + "wires": [ + [] + ] + }, + { + "id": "d43c3ed9.e6cb1", + "type": "ui_template", + "z": "cb95299c.2817c8", + "group": "46be9c86.dea684", + "name": "Object counts", + "order": 3, + "width": 0, + "height": 0, + "format": "

Object counts

", + "storeOutMessages": true, + "fwdInMessages": true, + "resendOnRefresh": true, + "templateScope": "local", + "className": "", + "x": 1340, + "y": 760, + "wires": [ + [] + ] + }, + { + "id": "33c28dc1.238002", + "type": "function", + "z": "cb95299c.2817c8", + "name": "prepare segmentation", + "func": "global.set('obj_counter', 0);\n\nvar segmentation_list = flow.get('segmentation_list')\nif (segmentation_list !== undefined && segmentation_list !== \"\") {\n msg.payload['path'] = segmentation_list\n}\n\n\nvar force = flow.get('force')\nif (force !== undefined && force !== \"\") {\n msg.payload['settings'] = {\"force\":Boolean(force)}\n}\n\n\nvar recursive = flow.get('recursive')\nif (recursive !== undefined && recursive !== \"\") {\n if (\"settings\" in msg.payload){\n msg.payload.settings[\"recursive\"] = Boolean(recursive)\n }\n else{\n msg.payload['settings'] = {\"recursive\": Boolean(recursive)}\n }\n}\n\nvar ecotaxa = flow.get('ecotaxa')\nif (ecotaxa !== undefined && ecotaxa !== \"\") {\n if (\"settings\" in msg.payload){\n msg.payload.settings[\"ecotaxa\"] = Boolean(ecotaxa)\n }\n else{\n msg.payload['settings'] = {\"ecotaxa\": Boolean(ecotaxa)}\n }\n}\n\nvar keep = flow.get('keep')\nif (keep !== undefined && keep !== \"\") {\n if (\"settings\" in msg.payload){\n msg.payload.settings[\"keep\"] = Boolean(keep)\n }\n else{\n msg.payload['settings'] = {\"keep\": Boolean(keep)}\n }\n}\n\nvar process_id = global.get('process_id')\nif (process_id !== undefined && process_id !== \"\") {\n if (\"settings\" in msg.payload){\n msg.payload.settings[\"process_id\"] = process_id\n }\n else{\n msg.payload['settings'] = {\"process_id\": process_id}\n }\n}\n\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 620, + "y": 460, + "wires": [ + [ + "16f3cef4.0acac9" + ] + ] + }, + { + "id": "fa12f9f8.00cfa8", + "type": "subflow:1c24ad9c.bebec2", + "z": "cb95299c.2817c8", + "name": "", + "env": [], + "x": 430, + "y": 380, + "wires": [ + [ + "3b72d11c.86e9e6" + ] + ] + }, + { + "id": "3b72d11c.86e9e6", + "type": "function", + "z": "cb95299c.2817c8", + "name": "get process_id", + "func": "msg.payload = msg.payload.process_id;\nmsg.topic = \"process_id\";\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "x": 600, + "y": 380, + "wires": [ + [ + "56971109c8be3b54" + ] + ] + }, + { + "id": "3ea12061.ce62c", + "type": "ui_list", + "z": "cb95299c.2817c8", + "group": "abeb6dad.635a2", + "name": "", + "order": 9, + "width": 10, + "height": 11, + "lineType": "one", + "actionType": "check", + "allowHTML": false, + "outputs": 1, + "topic": "", + "x": 790, + "y": 140, + "wires": [ + [ + "cb3b87b5.63c4" + ] + ] + }, + { + "id": "8bd8fb2c.53fa4", + "type": "dir2files", + "z": "cb95299c.2817c8", + "name": "", + "dirname": "/home/pi/data/img/", + "pathRegex": "", + "isRecursive": true, + "findDir": true, + "isArray": true, + "x": 460, + "y": 140, + "wires": [ + [ + "ba2947.c854deb8" + ] + ] + }, + { + "id": "127d4ee.f8ad1b1", + "type": "ui_button", + "z": "cb95299c.2817c8", + "name": "Refresh", + "group": "abeb6dad.635a2", + "order": 8, + "width": 0, + "height": 0, + "passthru": false, + "label": "Update acquisition's folder list", + "tooltip": "Refresh the list of previous acquisitions", + "color": "", + "bgcolor": "", + "icon": "mi-find_replace", + "payload": "", + "payloadType": "date", + "topic": "update", + "x": 260, + "y": 140, + "wires": [ + [ + "8bd8fb2c.53fa4", + "56f845f5.e7c054" + ] + ] + }, + { + "id": "946ce9ee.092cf", + "type": "inject", + "z": "cb95299c.2817c8", + "name": "Init", + "props": [ + { + "p": "payload" + } + ], + "repeat": "", + "crontab": "", + "once": true, + "onceDelay": 0.1, + "topic": "", + "payload": "", + "payloadType": "date", + "x": 270, + "y": 100, + "wires": [ + [ + "8bd8fb2c.53fa4", + "56f845f5.e7c054" + ] + ] + }, + { + "id": "cb3b87b5.63c4", + "type": "function", + "z": "cb95299c.2817c8", + "name": "update segmentation_list", + "func": "var segmentation_list = flow.get('segmentation_list');\n\nif (segmentation_list === undefined || segmentation_list === \"\") {\n segmentation_list = []\n console.log(\"error\")\n}\n\npath = \"/home/pi/data/img/\" + msg.payload.title\n\nif (msg.payload.isChecked){\n if (segmentation_list.includes(path) === false){\n segmentation_list.push(path)\n }\n // Element already in list, don't push it more than once\n //segmentation_list.push(msg.payload[\"title\"])\n}\nelse {\n var pos = segmentation_list.indexOf(path)\n segmentation_list.splice(pos, 1)\n}\n\nflow.set('segmentation_list', segmentation_list)", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "x": 990, + "y": 140, + "wires": [ + [] + ] + }, + { + "id": "56f845f5.e7c054", + "type": "change", + "z": "cb95299c.2817c8", + "name": "Reset segmentation_list", + "rules": [ + { + "t": "set", + "p": "segmentation_list", + "pt": "flow", + "to": "[]", + "tot": "json" + } + ], + "action": "", + "property": "", + "from": "", + "to": "", + "reg": false, + "x": 510, + "y": 100, + "wires": [ + [] + ] + }, + { + "id": "7fc72364.8f038c", + "type": "ui_template", + "z": "cb95299c.2817c8", + "group": "abeb6dad.635a2", + "name": "Update message", + "order": 1, + "width": 10, + "height": 3, + "format": "
You can choose here in which folder(s) you want the segmentation script to run. A few details though:\n
The segmentation is run recursively in all folders. So if you select a top level folder, the segmentation will be run in all subfolders.\n
Also, you will be able to chose wether for force the segmentation for folders in which it has run already.
", + "storeOutMessages": true, + "fwdInMessages": true, + "resendOnRefresh": true, + "templateScope": "local", + "x": 270, + "y": 40, + "wires": [ + [] + ] + }, + { + "id": "ba2947.c854deb8", + "type": "function", + "z": "cb95299c.2817c8", + "name": "remove common", + "func": "function remove_path(item, index, array) {\n array[index] = item.replace(\"/home/pi/data/img/\", \"\")\n} \n\nmsg.payload.forEach(remove_path)\n\nreturn msg", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "x": 630, + "y": 140, + "wires": [ + [ + "3ea12061.ce62c" + ] + ] + }, + { + "id": "21af0db1.c2c182", + "type": "ui_multistate_switch", + "z": "cb95299c.2817c8", + "name": "recursive toggle", + "group": "abeb6dad.635a2", + "order": 4, + "width": 5, + "height": 1, + "label": "Recursive folder", + "stateField": "payload", + "enableField": "enable", + "rounded": true, + "useThemeColors": true, + "hideSelectedLabel": false, + "options": [ + { + "label": "No", + "value": "0", + "valueType": "num", + "color": "#009933" + }, + { + "label": "Yes", + "value": "1", + "valueType": "num", + "color": "#999999" + } + ], + "x": 480, + "y": 220, + "wires": [ + [ + "880b192a.88e2d" + ] + ] + }, + { + "id": "dffb9881.feef8", + "type": "ui_multistate_switch", + "z": "cb95299c.2817c8", + "name": "force toggle", + "group": "abeb6dad.635a2", + "order": 3, + "width": 5, + "height": 1, + "label": "Force rework", + "stateField": "payload", + "enableField": "enable", + "rounded": true, + "useThemeColors": true, + "hideSelectedLabel": false, + "options": [ + { + "label": "No", + "value": "0", + "valueType": "num", + "color": "#009933" + }, + { + "label": "Yes", + "value": "1", + "valueType": "num", + "color": "#999999" + } + ], + "x": 470, + "y": 300, + "wires": [ + [ + "a4f68fa6.5d77f8" + ] + ] + }, + { + "id": "880b192a.88e2d", + "type": "change", + "z": "cb95299c.2817c8", + "name": "", + "rules": [ + { + "t": "set", + "p": "recursive", + "pt": "flow", + "to": "payload", + "tot": "msg" + } + ], + "action": "", + "property": "", + "from": "", + "to": "", + "reg": false, + "x": 690, + "y": 240, + "wires": [ + [] + ] + }, + { + "id": "a4f68fa6.5d77f8", + "type": "change", + "z": "cb95299c.2817c8", + "name": "", + "rules": [ + { + "t": "set", + "p": "force", + "pt": "flow", + "to": "payload", + "tot": "msg" + } + ], + "action": "", + "property": "", + "from": "", + "to": "", + "reg": false, + "x": 670, + "y": 280, + "wires": [ + [] + ] + }, + { + "id": "1ef1b43b.b0f064", + "type": "inject", + "z": "cb95299c.2817c8", + "name": "0", + "props": [ + { + "p": "payload" + } + ], + "repeat": "", + "crontab": "", + "once": true, + "onceDelay": 0.1, + "topic": "", + "payload": "0", + "payloadType": "num", + "x": 270, + "y": 280, + "wires": [ + [ + "dffb9881.feef8", + "a4f68fa6.5d77f8" + ] + ] + }, + { + "id": "f078c068.eacf58", + "type": "ui_template", + "z": "cb95299c.2817c8", + "group": "46be9c86.dea684", + "name": "Stream Segmented object", + "order": 2, + "width": 10, + "height": 8, + "format": "
\n Latest object segmented:
\n \"If\n
", + "storeOutMessages": true, + "fwdInMessages": true, + "resendOnRefresh": false, + "templateScope": "local", + "className": "", + "x": 1370, + "y": 600, + "wires": [ + [] + ] + }, + { + "id": "43f97b93.b76294", + "type": "inject", + "z": "cb95299c.2817c8", + "name": "1", + "props": [ + { + "p": "payload" + } + ], + "repeat": "", + "crontab": "", + "once": true, + "onceDelay": 0.1, + "topic": "", + "payload": "1", + "payloadType": "num", + "x": 270, + "y": 240, + "wires": [ + [ + "21af0db1.c2c182", + "880b192a.88e2d" + ] + ] + }, + { + "id": "4f3f7c4a.cb21c4", + "type": "change", + "z": "cb95299c.2817c8", + "name": "", + "rules": [ + { + "t": "set", + "p": "obj_counter", + "pt": "flow", + "to": "0", + "tot": "num" + } + ], + "action": "", + "property": "", + "from": "", + "to": "", + "reg": false, + "x": 1010, + "y": 840, + "wires": [ + [ + "fa3b7929.ac7da8", + "9d53dbe2.dbffe8" + ] + ] + }, + { + "id": "6bce0f60.f48998", + "type": "link in", + "z": "cb95299c.2817c8", + "name": "", + "links": [ + "596fc9d4.46c75" + ], + "x": 855, + "y": 840, + "wires": [ + [ + "4f3f7c4a.cb21c4" + ] + ] + }, + { + "id": "596fc9d4.46c75", + "type": "link out", + "z": "cb95299c.2817c8", + "name": "", + "links": [ + "6bce0f60.f48998" + ], + "x": 715, + "y": 500, + "wires": [] + }, + { + "id": "c72a1064.1ec388", + "type": "change", + "z": "cb95299c.2817c8", + "name": "Reset counters", + "rules": [ + { + "t": "set", + "p": "topic", + "pt": "msg", + "to": "object count", + "tot": "str" + }, + { + "t": "set", + "p": "payload", + "pt": "msg", + "to": "0", + "tot": "num" + } + ], + "action": "", + "property": "", + "from": "", + "to": "", + "reg": false, + "x": 600, + "y": 500, + "wires": [ + [ + "596fc9d4.46c75" + ] + ] + }, + { + "id": "9367534a.fb8568", + "type": "ui_multistate_switch", + "z": "cb95299c.2817c8", + "name": "Ecotaxa archive", + "group": "abeb6dad.635a2", + "order": 6, + "width": 5, + "height": 1, + "label": "Ecotaxa archive", + "stateField": "payload", + "enableField": "enable", + "rounded": true, + "useThemeColors": true, + "hideSelectedLabel": false, + "options": [ + { + "label": "No", + "value": "0", + "valueType": "num", + "color": "#009933" + }, + { + "label": "Yes", + "value": "1", + "valueType": "num", + "color": "#999999" + } + ], + "x": 1080, + "y": 220, + "wires": [ + [ + "25ac4f9a.5b05c8" + ] + ] + }, + { + "id": "25ac4f9a.5b05c8", + "type": "change", + "z": "cb95299c.2817c8", + "name": "", + "rules": [ + { + "t": "set", + "p": "ecotaxa", + "pt": "flow", + "to": "payload", + "tot": "msg" + } + ], + "action": "", + "property": "", + "from": "", + "to": "", + "reg": false, + "x": 1280, + "y": 240, + "wires": [ + [] + ] + }, + { + "id": "bef78886.8f0b98", + "type": "inject", + "z": "cb95299c.2817c8", + "name": "1", + "props": [ + { + "p": "payload" + } + ], + "repeat": "", + "crontab": "", + "once": true, + "onceDelay": 0.1, + "topic": "", + "payload": "1", + "payloadType": "num", + "x": 910, + "y": 240, + "wires": [ + [ + "9367534a.fb8568", + "25ac4f9a.5b05c8" + ] + ] + }, + { + "id": "32465a4e.8fcac6", + "type": "ui_multistate_switch", + "z": "cb95299c.2817c8", + "name": "Keep objects", + "group": "abeb6dad.635a2", + "order": 5, + "width": 5, + "height": 1, + "label": "Keep objects", + "stateField": "payload", + "enableField": "enable", + "rounded": true, + "useThemeColors": true, + "hideSelectedLabel": false, + "options": [ + { + "label": "No", + "value": "0", + "valueType": "num", + "color": "#009933" + }, + { + "label": "Yes", + "value": "1", + "valueType": "num", + "color": "#999999" + } + ], + "x": 1070, + "y": 300, + "wires": [ + [ + "8dd6f57f.b77f98" + ] + ] + }, + { + "id": "8dd6f57f.b77f98", + "type": "change", + "z": "cb95299c.2817c8", + "name": "", + "rules": [ + { + "t": "set", + "p": "keep", + "pt": "flow", + "to": "payload", + "tot": "msg" + } + ], + "action": "", + "property": "", + "from": "", + "to": "", + "reg": false, + "x": 1270, + "y": 280, + "wires": [ + [] + ] + }, + { + "id": "8090df89.c029e", + "type": "inject", + "z": "cb95299c.2817c8", + "name": "1", + "props": [ + { + "p": "payload" + } + ], + "repeat": "", + "crontab": "", + "once": true, + "onceDelay": 0.1, + "topic": "", + "payload": "1", + "payloadType": "num", + "x": 910, + "y": 280, + "wires": [ + [ + "32465a4e.8fcac6", + "8dd6f57f.b77f98" + ] + ] + }, + { + "id": "56971109c8be3b54", + "type": "ui_text_input", + "z": "cb95299c.2817c8", + "name": "process_id", + "label": "Process unique ID*", + "tooltip": "", + "group": "abeb6dad.635a2", + "order": 2, + "width": 10, + "height": 1, + "passthru": true, + "mode": "text", + "delay": 300, + "topic": "process_id", + "sendOnBlur": true, + "className": "", + "topicType": "str", + "x": 790, + "y": 380, + "wires": [ + [ + "c8749cbb.55254" + ] + ] + }, + { + "id": "2911fbc6.d28c24", + "type": "ui_template", + "z": "c1660bc.e7ff7f8", + "group": "c0ebfc57.42527", + "name": "Image browser", + "order": 1, + "width": "0", + "height": "0", + "format": "
\n\n
", + "storeOutMessages": true, + "fwdInMessages": true, + "resendOnRefresh": false, + "templateScope": "local", + "className": "", + "x": 400, + "y": 100, + "wires": [ + [] + ] + }, + { + "id": "4f02c726.de69b8", + "type": "ui_button", + "z": "9daf9e2b.019fc", + "name": "", + "group": "a7d64879.38298", + "order": 4, + "width": 6, + "height": 1, + "passthru": false, + "label": "Reboot", + "tooltip": "", + "color": "", + "bgcolor": "#AD1625", + "className": "", + "icon": "fa-repeat fa-2x", + "payload": "reboot", + "payloadType": "str", + "topic": "reboot", + "topicType": "str", + "x": 160, + "y": 240, + "wires": [ + [ + "4af9112d.87767" + ] + ] + }, + { + "id": "611a8b1c.a829b4", + "type": "exec", + "z": "9daf9e2b.019fc", + "command": "sudo", + "addpay": "payload", + "append": "now", + "useSpawn": "false", + "timer": "2", + "winHide": false, + "oldrc": false, + "name": "sudo cmd now", + "x": 480, + "y": 280, + "wires": [ + [], + [], + [] + ] + }, + { + "id": "bc76c4d6.a7ad28", + "type": "ui_button", + "z": "9daf9e2b.019fc", + "name": "", + "group": "a7d64879.38298", + "order": 5, + "width": 6, + "height": 1, + "passthru": false, + "label": "Shutdown", + "tooltip": "", + "color": "", + "bgcolor": "#AD1625", + "className": "", + "icon": "fa-power-off fa-2x", + "payload": "shutdown", + "payloadType": "str", + "topic": "shutdown", + "topicType": "str", + "x": 160, + "y": 320, + "wires": [ + [ + "4af9112d.87767" + ] + ] + }, + { + "id": "4af9112d.87767", + "type": "python3-function", + "z": "9daf9e2b.019fc", + "name": "action", + "func": "#!/usr/bin/python3\nimport smbus2 as smbus\n\nbus = smbus.SMBus(1)\n#turn off LED\nbus.write_byte_data(0x0d, 0x07, 0x00)\n#turn off Fan\nbus.write_byte_data(0x0d, 0x08, 0x00)\n\n#msg[\"payload\"] = str(msg[\"topic\"])+' now'\nreturn msg", + "outputs": 1, + "x": 330, + "y": 280, + "wires": [ + [ + "611a8b1c.a829b4" + ] + ] + }, + { + "id": "466eb611.4da048", + "type": "ui_button", + "z": "9daf9e2b.019fc", + "name": "", + "group": "a7d64879.38298", + "order": 2, + "width": 6, + "height": 1, + "passthru": true, + "label": "Restart Hardware Controller", + "tooltip": "", + "color": "", + "bgcolor": "#AD1625", + "className": "", + "icon": "fa-refresh fa-2x", + "payload": "Restarting hardware controller...", + "payloadType": "str", + "topic": "", + "topicType": "str", + "x": 460, + "y": 420, + "wires": [ + [ + "bd5cceef.b17ad", + "414353cde6a62346" + ] + ] + }, + { + "id": "bd5cceef.b17ad", + "type": "exec", + "z": "9daf9e2b.019fc", + "command": "sudo systemctl restart planktoscope-org.device-backend.controller.service", + "addpay": false, + "append": "", + "useSpawn": "false", + "timer": "", + "winHide": false, + "oldrc": false, + "name": "Restart hardware controller", + "x": 800, + "y": 420, + "wires": [ + [], + [], + [] + ] + }, + { + "id": "43cf8ff7.75231", + "type": "rpi-gpio out", + "z": "9daf9e2b.019fc", + "name": "Pump Enable", + "pin": "4", + "set": true, + "level": "1", + "freq": "", + "out": "out", + "bcm": true, + "x": 420, + "y": 80, + "wires": [] + }, + { + "id": "4bca8a25.15be3c", + "type": "rpi-gpio out", + "z": "9daf9e2b.019fc", + "name": "Focus Enable", + "pin": "12", + "set": true, + "level": "1", + "freq": "", + "out": "out", + "bcm": true, + "x": 420, + "y": 120, + "wires": [] + }, + { + "id": "50f9b5b.a84bccc", + "type": "inject", + "z": "9daf9e2b.019fc", + "name": "Default: ON", + "props": [ + { + "p": "payload" + } + ], + "repeat": "", + "crontab": "", + "once": true, + "onceDelay": "0.01", + "topic": "", + "payload": "true", + "payloadType": "bool", + "x": 150, + "y": 100, + "wires": [ + [ + "43cf8ff7.75231", + "4bca8a25.15be3c", + "6db0fcf5.f0effc", + "5fc4ede4.72516c" + ] + ] + }, + { + "id": "45a7b5aa.2ed20c", + "type": "link in", + "z": "9daf9e2b.019fc", + "name": "Restart Hardware Controller", + "links": [ + "e41870d7.300eb8", + "e4ead350b3d07578" + ], + "x": 195, + "y": 420, + "wires": [ + [ + "466eb611.4da048" + ] + ] + }, + { + "id": "b81b990a.d4dca", + "type": "link in", + "z": "9daf9e2b.019fc", + "name": "Shutdown", + "links": [ + "e08cfcb8.2a67e8" + ], + "x": 195, + "y": 280, + "wires": [ + [ + "4af9112d.87767" + ] + ] + }, + { + "id": "5fc4ede4.72516c", + "type": "rpi-gpio out", + "z": "9daf9e2b.019fc", + "name": "HAT Pump Enable", + "pin": "23", + "set": true, + "level": "1", + "freq": "", + "out": "out", + "bcm": true, + "x": 430, + "y": 40, + "wires": [] + }, + { + "id": "6db0fcf5.f0effc", + "type": "rpi-gpio out", + "z": "9daf9e2b.019fc", + "name": "HAT Focus Enable", + "pin": "5", + "set": true, + "level": "1", + "freq": "", + "out": "out", + "bcm": true, + "x": 430, "y": 160, + "wires": [] + }, + { + "id": "38c05fcb891c82bf", + "type": "exec", + "z": "9daf9e2b.019fc", + "command": "docker restart apps_ps_backend_proc-segmenter-server-1", + "addpay": false, + "append": "", + "useSpawn": "false", + "timer": "", + "winHide": false, + "oldrc": false, + "name": "Restart segmenter", + "x": 770, + "y": 500, "wires": [ - { - "id": "3ad9835.08c937c" - } + [], + [], + [] ] - } - ], - "out": [ - { - "x": 1040, - "y": 60, + }, + { + "id": "631b8626185addfc", + "type": "ui_button", + "z": "9daf9e2b.019fc", + "name": "", + "group": "a7d64879.38298", + "order": 3, + "width": 6, + "height": 1, + "passthru": true, + "label": "Restart Segmenter", + "tooltip": "", + "color": "", + "bgcolor": "#AD1625", + "className": "", + "icon": "fa-refresh fa-2x", + "payload": "Restarting segmenter...", + "payloadType": "str", + "topic": "", + "topicType": "str", + "x": 430, + "y": 500, "wires": [ - { - "id": "ad541674.4791c8", - "port": 0 - } - ] - } - ], - "env": [], - "color": "#DDAA99" - }, - { - "id": "4ed26b8b.253504", - "type": "subflow", - "name": "Save hardware config", - "info": "", - "category": "", - "in": [ - { - "x": 40, + [ + "38c05fcb891c82bf", + "e036d07cf78fde85" + ] + ] + }, + { + "id": "cec5bd6f962f6903", + "type": "ui_template", + "z": "9daf9e2b.019fc", + "group": "a7d64879.38298", + "name": "Logs", + "order": 1, + "width": 0, + "height": 0, + "format": "

\n The PlanktoScope software application consists of three components: a Node-RED dashboard which provides the user interface you're using; a Hardware Controller\n which executes commands sent from the Node-RED dashboard for hardware control and image acquisition; and a Segmenter which processes an acquired dataset of\n images and isolates objects from those images. Each component has its own independent log of messages, managed separately from the logs for the other components.\n

\n

\n All three components have live-updating logs which you can monitor. Additionally, the Hardware Controller and the Segmenter also save all of their log messages\n to files which you can browse and download. Those software components create a new log file each time they start, and the name of the log file includes the time\n in the PlanktoScope's clock when the software component started. However, if your PlanktoScope's clock is usually wrong, it makes the log files difficult to navigate.\n This will be fixed in a future version of the software.\n

\n

\n If you need to share your logs with other people (e.g. on Slack or GitHub), you should open the \"Downloadable Logs\" links, and then you can select one file or multiple\n log files for downloading as a zip archive.\n

\n", + "storeOutMessages": true, + "fwdInMessages": true, + "resendOnRefresh": true, + "templateScope": "local", + "className": "", + "x": 650, + "y": 180, + "wires": [ + [] + ] + }, + { + "id": "414353cde6a62346", + "type": "ui_toast", + "z": "9daf9e2b.019fc", + "position": "top right", + "displayTime": "3", + "highlight": "", + "sendall": true, + "outputs": 0, + "ok": "OK", + "cancel": "", + "raw": false, + "className": "", + "topic": "", + "name": "", + "x": 770, + "y": 380, + "wires": [] + }, + { + "id": "e036d07cf78fde85", + "type": "ui_toast", + "z": "9daf9e2b.019fc", + "position": "top right", + "displayTime": "3", + "highlight": "", + "sendall": true, + "outputs": 0, + "ok": "OK", + "cancel": "", + "raw": false, + "className": "", + "topic": "", + "name": "", + "x": 770, + "y": 460, + "wires": [] + }, + { + "id": "ddcbbfa5.cd158", + "type": "exec", + "z": "1371dec5.76e671", + "command": "vcgencmd measure_temp | tr -d \"temp=\" | tr -d \"'C\" | tr -d \"\\n\"", + "addpay": false, + "append": "", + "useSpawn": "", + "timer": "", + "name": "RPi Temp.", + "x": 330, "y": 40, "wires": [ - { - "id": "53d163be.47cf24" - } - ] - } - ], - "out": [], - "env": [], - "meta": {}, - "color": "#DDAA99" - }, - { - "id": "e6665421f66ea4c8", - "type": "subflow", - "name": "Load hardware config", - "info": "", - "category": "", - "in": [ - { - "x": 40, + [ + "bc503fa5.f46dd" + ], + [], + [] + ] + }, + { + "id": "3910d662.fa1f7a", + "type": "exec", + "z": "1371dec5.76e671", + "command": "df -h | grep /dev/root | awk -F ' ' '{print $5}' | tr -d % | tr \"\\n$\" \"\\ \" | sed 's/,/./' | tr -d \" \"", + "addpay": false, + "append": "", + "useSpawn": "", + "timer": "", + "name": "Disk Usage", + "x": 330, + "y": 120, + "wires": [ + [ + "eaf74a43.fa27d" + ], + [], + [] + ] + }, + { + "id": "1cd5b4c0.46af9b", + "type": "inject", + "z": "1371dec5.76e671", + "name": "update: 5s", + "props": [ + { + "p": "payload" + }, + { + "p": "topic", + "vt": "str" + } + ], + "repeat": "5", + "crontab": "", + "once": false, + "onceDelay": "", + "topic": "", + "payload": "", + "payloadType": "date", + "x": 110, + "y": 160, + "wires": [ + [ + "3910d662.fa1f7a", + "ddcbbfa5.cd158", + "23a84a3856fb68bd", + "4ed64bd91fa9fbdf", + "ed5f2d963d85478b" + ] + ] + }, + { + "id": "2549f778.4eb828", + "type": "python3-function", + "z": "1371dec5.76e671", + "name": "fan control", + "func": "import smbus2 as smbus\n\nstate = msg[\"payload\"]\nbus = smbus.SMBus(1)\n\nDEVICE_ADDRESS = 0x0d\n# command happens twice, for reasons\nif state == \"off\":\n with smbus.SMBus(1) as bus:\n bus.write_byte_data(DEVICE_ADDRESS, 0x08, 0x00)\n bus.write_byte_data(DEVICE_ADDRESS, 0x08, 0x00)\n return msg\nif state == \"on\":\n with smbus.SMBus(1) as bus:\n bus.write_byte_data(DEVICE_ADDRESS, 0x08, 0x01)\n bus.write_byte_data(DEVICE_ADDRESS, 0x08, 0x01)\n return msg\n", + "outputs": 1, + "x": 1150, "y": 40, "wires": [ - { - "id": "48ceeda454438cb7" - } + [ + "e640ebb5c397f424" + ] ] - } - ], - "out": [ - { - "x": 900, + }, + { + "id": "b7ab1ada.1f4158", + "type": "exec", + "z": "1371dec5.76e671", + "command": "i2cdetect -y 1", + "addpay": false, + "append": "", + "useSpawn": "false", + "timer": "1", + "winHide": false, + "oldrc": false, + "name": "i2c update", + "x": 1440, "y": 40, "wires": [ - { - "id": "2b1a67ac127f3fe7", - "port": 0 - } - ] - } - ], - "env": [], - "meta": {}, - "color": "#DDAA99" - }, - { - "id": "3a6bb13f.c9703e", - "type": "ui_tab", - "name": "Home", - "icon": "home", - "order": 1, - "disabled": false, - "hidden": false - }, - { - "id": "181bb236.1e94be", - "type": "ui_tab", - "name": "Optic Configuration", - "icon": "fa-eye", - "order": 3, - "disabled": false, - "hidden": false - }, - { - "id": "c9194f02.9d5e9", - "type": "ui_tab", - "name": "Fluidic Acquisition", - "icon": "fa-flask", - "order": 4, - "disabled": false, - "hidden": false - }, - { - "id": "8d16beb8.9b3fb", - "type": "ui_tab", - "name": "Segmentation", - "icon": "fa-crop", - "order": 5, - "disabled": false, - "hidden": false - }, - { - "id": "d9cd733b.ab73d", - "type": "ui_tab", - "name": "System Monitoring", - "icon": "fa-thermometer-full", - "order": 7, - "disabled": false, - "hidden": false - }, - { - "id": "4248342d.e55fac", - "type": "ui_group", - "name": "Optic Characterization", - "tab": "181bb236.1e94be", - "order": 4, - "disp": true, - "width": "6", - "collapse": false - }, - { - "id": "858a0e3c.987fe", - "type": "ui_group", - "name": "Preview", - "tab": "c9194f02.9d5e9", - "order": 1, - "disp": true, - "width": 10, - "collapse": false - }, - { - "id": "64903b47.4034e4", - "type": "ui_group", - "name": "Navigation", - "tab": "8d16beb8.9b3fb", - "order": 3, - "disp": false, - "width": "6", - "collapse": false - }, - { - "id": "3da7da8f.179606", - "type": "ui_group", - "name": "Metrics", - "tab": "d9cd733b.ab73d", - "order": 1, - "disp": true, - "width": "24", - "collapse": true, - "className": "" - }, - { - "id": "cc8bc4eb.651868", - "type": "ui_base", - "theme": { - "name": "theme-dark", - "lightTheme": { - "default": "#0094CE", - "baseColor": "#5900ce", - "baseFont": "-apple-system,BlinkMacSystemFont,Segoe UI,Roboto,Oxygen-Sans,Ubuntu,Cantarell,Helvetica Neue,sans-serif", - "edited": false, - "reset": false - }, - "darkTheme": { - "default": "#097479", - "baseColor": "#097479", - "baseFont": "-apple-system,BlinkMacSystemFont,Segoe UI,Roboto,Oxygen-Sans,Ubuntu,Cantarell,Helvetica Neue,sans-serif", - "edited": true, - "reset": false - }, - "customTheme": { - "name": "Untitled Theme 1", - "default": "#4B7930", - "baseColor": "#4B7930", - "baseFont": "-apple-system,BlinkMacSystemFont,Segoe UI,Roboto,Oxygen-Sans,Ubuntu,Cantarell,Helvetica Neue,sans-serif" - }, - "themeState": { - "base-color": { - "default": "#097479", - "value": "#097479", - "edited": true - }, - "page-titlebar-backgroundColor": { - "value": "#097479", - "edited": false - }, - "page-backgroundColor": { - "value": "#111111", - "edited": false - }, - "page-sidebar-backgroundColor": { - "value": "#333333", - "edited": false - }, - "group-textColor": { - "value": "#0eb8c0", - "edited": false - }, - "group-borderColor": { - "value": "#555555", - "edited": false - }, - "group-backgroundColor": { - "value": "#333333", - "edited": false - }, - "widget-textColor": { - "value": "#eeeeee", - "edited": false - }, - "widget-backgroundColor": { - "value": "#097479", - "edited": false - }, - "widget-borderColor": { - "value": "#333333", - "edited": false + [], + [], + [] + ] + }, + { + "id": "bc503fa5.f46dd", + "type": "switch", + "z": "1371dec5.76e671", + "name": "", + "property": "payload", + "propertyType": "msg", + "rules": [ + { + "t": "gt", + "v": "40", + "vt": "num" + }, + { + "t": "lte", + "v": "35", + "vt": "num" + } + ], + "checkall": "true", + "repair": false, + "outputs": 2, + "x": 570, + "y": 40, + "wires": [ + [ + "a25d6486.e1ce28" + ], + [ + "5d4f3e71.1bad4" + ] + ] + }, + { + "id": "5d4f3e71.1bad4", + "type": "change", + "z": "1371dec5.76e671", + "name": "Set OFF", + "rules": [ + { + "t": "set", + "p": "payload", + "pt": "msg", + "to": "off", + "tot": "str" + } + ], + "action": "", + "property": "", + "from": "", + "to": "", + "reg": false, + "x": 720, + "y": 60, + "wires": [ + [ + "7fb13a4a53b612a0" + ] + ] + }, + { + "id": "a25d6486.e1ce28", + "type": "change", + "z": "1371dec5.76e671", + "name": "Set ON", + "rules": [ + { + "t": "set", + "p": "payload", + "pt": "msg", + "to": "on", + "tot": "str" + } + ], + "action": "", + "property": "", + "from": "", + "to": "", + "reg": false, + "x": 720, + "y": 20, + "wires": [ + [ + "7fb13a4a53b612a0" + ] + ] + }, + { + "id": "569154a.b53182c", + "type": "inject", + "z": "1371dec5.76e671", + "name": "once", + "props": [ + { + "p": "payload" + } + ], + "repeat": "", + "crontab": "", + "once": true, + "onceDelay": "", + "topic": "", + "payload": "start", + "payloadType": "str", + "x": 170, + "y": 680, + "wires": [ + [ + "ccb5172d10c1ccaf" + ] + ] + }, + { + "id": "4828d2f4.7c712c", + "type": "function", + "z": "1371dec5.76e671", + "name": "set global", + "func": "global.set(\"acq_instrument_id\",msg.payload);\n", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 580, + "y": 700, + "wires": [ + [] + ] + }, + { + "id": "e2f39a35.f57298", + "type": "subflow:1c24ad9c.bebec2", + "z": "1371dec5.76e671", + "name": "", + "env": [], + "x": 170, + "y": 620, + "wires": [ + [ + "950b773ad4c0fdfe" + ] + ] + }, + { + "id": "3e64877a.9684b", + "type": "function", + "z": "1371dec5.76e671", + "name": "set global", + "func": "global.set(\"acq_software\", \"PlanktoScope \" + msg.payload);\n", + "outputs": 1, + "timeout": "", + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 820, + "y": 500, + "wires": [ + [] + ] + }, + { + "id": "bdc6718a.dd5d48", + "type": "ui_text", + "z": "1371dec5.76e671", + "group": "ce9e278.781eed8", + "order": 2, + "width": 0, + "height": 0, + "name": "", + "label": "Instrument Type", + "format": "{{msg.payload}}", + "layout": "row-spread", + "className": "", + "style": false, + "font": "", + "fontSize": "", + "color": "#000000", + "x": 600, + "y": 620, + "wires": [] + }, + { + "id": "a400a97e.e333a8", + "type": "ui_text", + "z": "1371dec5.76e671", + "group": "ce9e278.781eed8", + "order": 1, + "width": 0, + "height": 0, + "name": "", + "label": "Instrument Name", + "format": "{{msg.payload}}", + "layout": "row-spread", + "className": "", + "style": false, + "font": "", + "fontSize": "", + "color": "#000000", + "x": 610, + "y": 660, + "wires": [] + }, + { + "id": "8343fa69.49339", + "type": "ui_text", + "z": "1371dec5.76e671", + "group": "ce9e278.781eed8", + "order": 3, + "width": 0, + "height": 0, + "name": "", + "label": "Software Version", + "format": "{{msg.payload}}", + "layout": "row-spread", + "className": "", + "style": false, + "font": "", + "fontSize": "", + "color": "#000000", + "x": 850, + "y": 540, + "wires": [] + }, + { + "id": "f783aefd.c3bfd8", + "type": "ui_text", + "z": "1371dec5.76e671", + "group": "ce9e278.781eed8", + "order": 4, + "width": 0, + "height": 0, + "name": "", + "label": "Camera Name", + "format": "{{msg.payload}}", + "layout": "row-spread", + "x": 600, + "y": 740, + "wires": [] + }, + { + "id": "30067f35.532f2", + "type": "link in", + "z": "1371dec5.76e671", + "name": "Camera Name", + "links": [ + "559a8085.1d6b9" + ], + "x": 205, + "y": 740, + "wires": [ + [ + "f783aefd.c3bfd8" + ] + ] + }, + { + "id": "11b51f8f.acd308", + "type": "python3-function", + "z": "1371dec5.76e671", + "d": true, + "name": "fan temperature", + "func": "import smbus\nbus = smbus.SMBus(1)\n\naddr = 0x0d\nfan_reg = 0x08\n\ntemp = float( msg[\"payload\"])\n\n# 0x01 full speed, 0x02: 20% speed, ..., 0x09: 90% speed\n\nif temp < 38:\n bus.write_byte_data(addr, fan_reg, 0x00)\nelif temp < 43:\n bus.write_byte_data(addr, fan_reg, 0x02)\nelif temp < 46:\n bus.write_byte_data(addr, fan_reg, 0x04)\nelif temp < 48:\n bus.write_byte_data(addr, fan_reg, 0x06)\nelif temp < 52:\n bus.write_byte_data(addr, fan_reg, 0x08)\nelse:\n bus.write_byte_data(addr, fan_reg, 0x01)\n\nreturn msg", + "outputs": 1, + "x": 1440, + "y": 120, + "wires": [ + [] + ] + }, + { + "id": "eaf74a43.fa27d", + "type": "switch", + "z": "1371dec5.76e671", + "name": "if disk > 90%", + "property": "payload", + "propertyType": "msg", + "rules": [ + { + "t": "gte", + "v": "90", + "vt": "num" + } + ], + "checkall": "true", + "repair": false, + "outputs": 1, + "x": 590, + "y": 120, + "wires": [ + [ + "6d09f428.930bcc" + ] + ] + }, + { + "id": "46d5e78b.15f998", + "type": "ui_toast", + "z": "1371dec5.76e671", + "position": "dialog", + "displayTime": "10", + "highlight": "", + "sendall": true, + "outputs": 1, + "ok": "OK", + "cancel": "", + "raw": false, + "className": "", + "topic": "", + "name": "", + "x": 1090, + "y": 120, + "wires": [ + [] + ] + }, + { + "id": "24df077a.cb252", + "type": "change", + "z": "1371dec5.76e671", + "name": "full disk msg", + "rules": [ + { + "t": "set", + "p": "payload", + "pt": "msg", + "to": "\"Your drive has reached 90% capacity, you should do a backup to an external drive and a purge.\"", + "tot": "str" + } + ], + "action": "", + "property": "", + "from": "", + "to": "", + "reg": false, + "x": 930, + "y": 120, + "wires": [ + [ + "46d5e78b.15f998" + ] + ] + }, + { + "id": "6d09f428.930bcc", + "type": "delay", + "z": "1371dec5.76e671", + "name": "", + "pauseType": "rate", + "timeout": "5", + "timeoutUnits": "seconds", + "rate": "1", + "nbRateUnits": "5", + "rateUnits": "minute", + "randomFirst": "1", + "randomLast": "5", + "randomUnits": "seconds", + "drop": true, + "allowrate": false, + "outputs": 1, + "x": 760, + "y": 120, + "wires": [ + [ + "24df077a.cb252" + ] + ] + }, + { + "id": "e640ebb5c397f424", + "type": "delay", + "z": "1371dec5.76e671", + "name": "", + "pauseType": "delay", + "timeout": "1", + "timeoutUnits": "seconds", + "rate": "1", + "nbRateUnits": "1", + "rateUnits": "second", + "randomFirst": "1", + "randomLast": "5", + "randomUnits": "seconds", + "drop": false, + "allowrate": false, + "outputs": 1, + "x": 1300, + "y": 40, + "wires": [ + [ + "b7ab1ada.1f4158" + ] + ] + }, + { + "id": "7fb13a4a53b612a0", + "type": "rbe", + "z": "1371dec5.76e671", + "name": "", + "func": "rbe", + "gap": "", + "start": "", + "inout": "out", + "septopics": true, + "property": "payload", + "topi": "topic", + "x": 1010, + "y": 40, + "wires": [ + [ + "2549f778.4eb828" + ] + ] + }, + { + "id": "ccb5172d10c1ccaf", + "type": "file in", + "z": "1371dec5.76e671", + "name": "Get machine name", + "filename": "/run/machine-name", + "filenameType": "str", + "format": "utf8", + "chunk": false, + "sendError": false, + "encoding": "none", + "allProps": false, + "x": 350, + "y": 680, + "wires": [ + [ + "a400a97e.e333a8", + "4828d2f4.7c712c" + ] + ] + }, + { + "id": "950b773ad4c0fdfe", + "type": "change", + "z": "1371dec5.76e671", + "name": "Get acq_instrument", + "rules": [ + { + "t": "set", + "p": "payload", + "pt": "msg", + "to": "payload.acq_instrument", + "tot": "msg" + }, + { + "t": "set", + "p": "topic", + "pt": "msg", + "to": "acq_instrument", + "tot": "str" + } + ], + "action": "", + "property": "", + "from": "", + "to": "", + "reg": false, + "x": 350, + "y": 620, + "wires": [ + [ + "bdc6718a.dd5d48" + ] + ] + }, + { + "id": "24de7407445d2087", + "type": "inject", + "z": "1371dec5.76e671", + "name": "once", + "props": [ + { + "p": "payload" + } + ], + "repeat": "", + "crontab": "", + "once": true, + "onceDelay": "", + "topic": "", + "payload": "start", + "payloadType": "str", + "x": 90, + "y": 520, + "wires": [ + [ + "e4f9ed2b337c2fa6" + ] + ] + }, + { + "id": "e4f9ed2b337c2fa6", + "type": "file in", + "z": "1371dec5.76e671", + "name": "Versioning File", + "filename": "/usr/share/planktoscope/installer-versioning.yml", + "filenameType": "str", + "format": "utf8", + "chunk": false, + "sendError": false, + "encoding": "none", + "allProps": false, + "x": 240, + "y": 520, + "wires": [ + [ + "db79aae8a7fe3512" + ] + ] + }, + { + "id": "db79aae8a7fe3512", + "type": "yaml", + "z": "1371dec5.76e671", + "property": "payload", + "name": "", + "x": 390, + "y": 520, + "wires": [ + [ + "04c313e8d9aac122", + "ef1970121e57c5e8", + "574361abfe75b3b3" + ] + ] + }, + { + "id": "04c313e8d9aac122", + "type": "change", + "z": "1371dec5.76e671", + "name": "Get repo", + "rules": [ + { + "t": "set", + "p": "payload", + "pt": "msg", + "to": "payload.repo", + "tot": "msg" + } + ], + "action": "", + "property": "", + "from": "", + "to": "", + "reg": false, + "x": 580, + "y": 480, + "wires": [ + [ + "57b3b083a2455e09" + ] + ] + }, + { + "id": "ef1970121e57c5e8", + "type": "change", + "z": "1371dec5.76e671", + "name": "Get version", + "rules": [ + { + "t": "set", + "p": "payload", + "pt": "msg", + "to": "payload.version", + "tot": "msg" + } + ], + "action": "", + "property": "", + "from": "", + "to": "", + "reg": false, + "x": 590, + "y": 520, + "wires": [ + [ + "3e64877a.9684b", + "8343fa69.49339" + ] + ] + }, + { + "id": "57b3b083a2455e09", + "type": "function", + "z": "1371dec5.76e671", + "name": "set global", + "func": "global.set(\"process_source\", msg.payload);\n", + "outputs": 1, + "timeout": "", + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 820, + "y": 460, + "wires": [ + [] + ] + }, + { + "id": "574361abfe75b3b3", + "type": "change", + "z": "1371dec5.76e671", + "name": "Get commit", + "rules": [ + { + "t": "set", + "p": "payload", + "pt": "msg", + "to": "payload.commit", + "tot": "msg" + } + ], + "action": "", + "property": "", + "from": "", + "to": "", + "reg": false, + "x": 590, + "y": 560, + "wires": [ + [ + "016d1d2a2f19f1a6" + ] + ] + }, + { + "id": "016d1d2a2f19f1a6", + "type": "function", + "z": "1371dec5.76e671", + "name": "set global", + "func": "global.set(\"process_commit\", msg.payload);\n", + "outputs": 1, + "timeout": "", + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 820, + "y": 580, + "wires": [ + [] + ] + }, + { + "id": "4ed64bd91fa9fbdf", + "type": "ui_template", + "z": "1371dec5.76e671", + "group": "3da7da8f.179606", + "name": "Metrics panel", + "order": 1, + "width": "0", + "height": "0", + "format": "
\n

\n The instrument's system time is different from your web browser's time by {{drift}}.\n As a result, timestamps in your datasets will be incorrect.\n Additionally, system metrics will not be recorded or shown correctly.\n Additionally, you will see incorrectly-aligned graphs in the metrics below.\n

\n

Please change the instrument's system time or your web browser's time to accurate values.

\n

\n \n

\n
\n\n
\n

Loading system metrics, please wait...

\n
\n\n
\n \n
\n\n\n", + "storeOutMessages": true, + "fwdInMessages": true, + "resendOnRefresh": false, + "templateScope": "local", + "className": "", + "x": 330, + "y": 280, + "wires": [ + [] + ] + }, + { + "id": "38bad1e220cd5d87", + "type": "ui_text", + "z": "1371dec5.76e671", + "group": "ce9e278.781eed8", + "order": 5, + "width": 0, + "height": 0, + "name": "", + "label": "System Time", + "format": "{{msg.payload}}", + "layout": "row-spread", + "className": "", + "style": false, + "font": "", + "fontSize": 16, + "color": "#000000", + "x": 590, + "y": 240, + "wires": [] + }, + { + "id": "ed5f2d963d85478b", + "type": "function", + "z": "1371dec5.76e671", + "name": "Get system time", + "func": "var date = new Date();\ndate.setSeconds(0, 0);\nmsg.payload = (\n date.toISOString().replace('T', ' ').replace(/:\\d+\\.\\d+Z/,' UTC')\n);\nreturn msg", + "outputs": 1, + "timeout": 0, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 340, + "y": 240, + "wires": [ + [ + "38bad1e220cd5d87" + ] + ] + }, + { + "id": "23a84a3856fb68bd", + "type": "ui_template", + "z": "1371dec5.76e671", + "group": "ce9e278.781eed8", + "name": "Browser time", + "order": 6, + "width": "6", + "height": "1", + "format": "
\n

Browser Time

\n

{{time}}

\n
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"z": "cb95299c.2817c8", - "name": "spacer", - "group": "46be9c86.dea684", - "order": 4, - "width": 3, - "height": 1 - }, - { - "id": "5f98f5f140f0ecde", - "type": "ui_spacer", - "z": "cb95299c.2817c8", - "name": "spacer", - "group": "46be9c86.dea684", - "order": 6, - "width": 3, - "height": 1 - }, - { - "id": "7bc0a4c416e4545c", - "type": "ui_group", - "name": "Culture Date and Time", - "tab": "737ec584.2eea2c", - "order": 2, - "disp": true, - "width": "10", - "collapse": false, - "className": "" - }, - { - "id": "6c31ad948a9d62fd", - "type": "ui_spacer", - "name": "spacer", - "group": "4248342d.e55fac", - "order": 2, - "width": 1, - "height": 1 - }, - { - "id": "833bc5bb.217ba8", - "type": "ui_group", - "name": "Preview", - "tab": "181bb236.1e94be", - "order": 1, - "disp": true, - "width": 18, - "collapse": false - }, - { - "id": "a7d64879.38298", - "type": "ui_group", - "name": "Logs", - "tab": "2489e51c.eed77a", - "order": 1, - "disp": true, - "width": "12", - "collapse": true, - "className": "" - 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Fluidic Acquisition
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Sample
\n
\n In doubt? Start Here!\n", - "storeOutMessages": true, - "fwdInMessages": true, - "resendOnRefresh": false, - "templateScope": "local", - "x": 160, - "y": 60, - "wires": [["4e78af2d.90be7"]] - }, - { - "id": "dab82064.26a8d", - "type": "ui_button", - "z": "eaae323a.31b3", - "name": "Unlock button", - "group": "f3ca28ef.4df0a8", - "order": 2, - "width": 0, - "height": 0, - "passthru": false, - "label": "Unlock button", - "tooltip": "", - "color": "", - "bgcolor": "", - "icon": "", - "payload": "shutdown", - "payloadType": "flow", - "topic": "", - "x": 120, - "y": 380, - "wires": [["6c3a3b4.78cad44"]] - }, - { - "id": "1c658761.b852a1", - "type": "ui_toast", - "z": "eaae323a.31b3", - "position": "dialog", - "displayTime": "3", - "highlight": "", - "sendall": true, - "outputs": 1, - "ok": "YES PLEASE", - "cancel": "NO!", - "raw": false, - "topic": "Are you sure?", - "name": "Confirmation message", - "x": 800, - "y": 380, - "wires": [["8f1b8e23.daafe"]] - }, - { - "id": "a48ff63f.db5e18", - "type": "inject", - "z": "eaae323a.31b3", - "name": "disabled", - "props": [ - { - "p": "enabled", - "v": "false", - "vt": "bool" - } - ], - "repeat": "", - "crontab": "", - "once": true, - "onceDelay": 0.1, - "topic": "", - "x": 140, - "y": 420, - "wires": [["d58039a9.6e7928"]] - }, - { - "id": "b67a7147.65fcd8", - "type": "ui_button", - "z": "eaae323a.31b3", - "name": "Shutdown button", - "group": "f3ca28ef.4df0a8", - "order": 4, - "width": 0, - "height": 0, - "passthru": false, - "label": "Shutdown", - "tooltip": "", - "color": "", - "bgcolor": "#AD1625", - "icon": "fa-power-off fa-2x", - "payload": "Do you want to turn the machine off now?", - "payloadType": "str", - "topic": "", - "x": 550, - "y": 380, - "wires": [["1c658761.b852a1"]] - }, - { - "id": "d58039a9.6e7928", - "type": "change", - "z": "eaae323a.31b3", - "name": "", - "rules": [ - { - "t": "set", - "p": "shutdown", - "pt": "flow", - "to": "false", - "tot": "bool" - }, - { - "t": "set", - "p": "enabled", - "pt": "msg", - "to": "shutdown", - "tot": "flow" - } - ], - "action": "", - "property": "", - "from": "", - "to": "", - "reg": false, - "x": 320, - "y": 420, - "wires": [["b67a7147.65fcd8"]] - }, - { - "id": "6c3a3b4.78cad44", - "type": "function", - "z": "eaae323a.31b3", - "name": "Toggle", - "func": "flow.set(\"shutdown\", !flow.get(\"shutdown\"))\nmsg.enabled = flow.get(\"shutdown\")\nreturn msg;", - "outputs": 1, - "noerr": 0, - "initialize": "", - "finalize": "", - "x": 290, - "y": 380, - "wires": [["b67a7147.65fcd8"]] - }, - { - "id": "d1153ad6.40d738", - "type": "ui_template", - "z": "eaae323a.31b3", - "group": "f3ca28ef.4df0a8", - "name": "Shutdown information", - "order": 1, - "width": 0, - "height": 0, - "format": "
To prevent data corruption, please always shutdown the machine before unplugging the unit.\n

\nRemember to first unlock the shutdown button.\n
", - "storeOutMessages": true, - "fwdInMessages": false, - "resendOnRefresh": true, - "templateScope": "local", - "x": 120, - "y": 320, - "wires": [[]] - }, - { - "id": "e08cfcb8.2a67e8", - "type": "link out", - "z": "eaae323a.31b3", - "name": "Home shutdown button", - "links": ["b81b990a.d4dca"], - "x": 715, - "y": 500, - "wires": [] - }, - { - "id": "ce7087fc.dcc9e8", - "type": "ui_toast", - "z": "eaae323a.31b3", - "position": "dialog", - "displayTime": "10", - "highlight": "", - "sendall": true, - "outputs": 1, - "ok": "OK", - "cancel": "", - "raw": false, - "topic": "Turning off now!", - "name": "Shutdown message", - "x": 570, - "y": 540, - "wires": [[]] - }, - { - "id": "7d1626a0.deb85", - "type": "change", - "z": "eaae323a.31b3", - "name": "shutdown!", - "rules": [ - { - "t": "set", - "p": "payload", - "pt": "msg", - "to": "shutdown", - "tot": "str" - } - ], - "action": "", - "property": "", - "from": "", - "to": "", - "reg": false, - "x": 300, - "y": 500, - "wires": [["e08cfcb8.2a67e8"]] - }, - { - "id": "8f1b8e23.daafe", - "type": "switch", - "z": "eaae323a.31b3", - "name": "", - "property": "payload", - "propertyType": "msg", - "rules": [ - { - "t": "eq", - "v": "NO!", - "vt": "str" - }, - { - "t": "else" - } - ], - "checkall": "true", - "repair": false, - "outputs": 2, - "x": 150, - "y": 500, - "wires": [["d58039a9.6e7928"], ["7d1626a0.deb85", "281a56c9.ec7902"]] - }, - { - "id": "281a56c9.ec7902", - "type": "change", - "z": "eaae323a.31b3", - "name": "Shutdown message", - "rules": [ - { - "t": "set", - "p": "payload", - "pt": "msg", - "to": "Please wait a minute before disconnecting the machine from its power supply!", - "tot": "str" - } - ], - "action": "", - "property": "", - "from": "", - "to": "", - "reg": false, - "x": 330, - "y": 540, - "wires": [["ce7087fc.dcc9e8"]] - }, - { - "id": "4557d689.a4fa88", - "type": "ui_text_input", - "z": "b771c342.49603", - "name": "sample_ship", - "label": "Name of the ship", - "tooltip": "", - "group": "3e1ba03d.f01d8", - "order": 2, - "width": 0, - "height": 0, - "passthru": true, - "mode": "text", - "delay": "300", - "topic": "sample_ship", - "sendOnBlur": true, - "className": "", - "topicType": "str", - "x": 670, - "y": 80, - "wires": [["9f501f49.45645"]] - }, - { - "id": "fcfc31ae.af3af", - "type": "ui_dropdown", - "z": "b771c342.49603", - "name": "sample_sampling_gear", - "label": "Sampling gear*", - "tooltip": "", - "place": "Choose from list", - "group": "3e1ba03d.f01d8", - "order": 6, - "width": 0, - "height": 0, - "passthru": true, - "multiple": false, - "options": [ - { - "label": "High Speed Net", - "value": "net_hsn", - "type": "str" - }, - { - "label": "Tara Decknet", - "value": "net_decknet", - "type": "str" - }, - { - "label": "Plankton net", - "value": "net", - "type": "str" - }, - { - "label": "Niskin bottle 12L", - "value": "niskin_12L", - "type": "str" - }, - { - "label": "Niskin bottle 24L", - "value": "niskin_24L", - "type": "str" - }, - { - "label": "Pass Hull", - "value": "pass_hull", - "type": "str" - }, - { - "label": "Single location (with net or bucket)", - "value": "single_location", - "type": "str" - }, - { - "label": "Lab culture", - "value": "culture", - "type": "str" - }, - { - "label": "Test", - "value": "test", - "type": "str" - } - ], - "payload": "", - "topic": "sample_sampling_gear", - "topicType": "str", - "className": "", - "x": 630, - "y": 200, - "wires": [["9f501f49.45645", "46eb1bf8.3dc5f4", "3ac7b631f5d8ef90"]] - }, - { - "id": "82c5fc77.59c97", - "type": "ui_text_input", - "z": "b771c342.49603", - "name": "sample_operator", - "label": "Name of the operator*", - "tooltip": "", - "group": "3e1ba03d.f01d8", - "order": 3, - "width": 0, - "height": 0, - "passthru": true, - "mode": "text", - "delay": "300", - "topic": "sample_operator", - "sendOnBlur": true, - "className": "", - "topicType": "str", - "x": 650, - "y": 160, - "wires": [["9f501f49.45645"]] - }, - { - "id": "9c882b37.fde668", - "type": "ui_text_input", - "z": "b771c342.49603", - "name": "sample_project", - "label": "Name of the project*", - "tooltip": "", - "group": "3e1ba03d.f01d8", - "order": 1, - "width": 0, - "height": 0, - "passthru": true, - "mode": "text", - "delay": "300", - "topic": "sample_project", - "sendOnBlur": true, - "className": "", - "topicType": "str", - "x": 660, - "y": 40, - "wires": [["9f501f49.45645"]] - }, - { - "id": "94eb4221.9b92c", - "type": "ui_text_input", - "z": "b771c342.49603", - "name": "sample_id", - "label": "Station ID*", - "tooltip": "", - "group": "3e1ba03d.f01d8", - "order": 4, - "width": 0, - "height": 0, - "passthru": true, - "mode": "text", - "delay": "300", - "topic": "sample_id", - "sendOnBlur": true, - "className": "", - "topicType": "str", - "x": 670, - "y": 120, - "wires": [["9f501f49.45645"]] - }, - { - "id": "9f501f49.45645", - "type": "function", - "z": "b771c342.49603", - "name": "set global", - "func": "global.set(msg.topic,msg.payload);", - "outputs": 1, - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 1080, - "y": 200, - "wires": [[]] - }, - { - "id": "222c851d.5d0a3a", - "type": "ui_ui_control", - "z": "b771c342.49603", - "name": "", - "events": "change", - "x": 400, - "y": 880, - "wires": [[]] - }, - { - "id": "52f6b103.1efb6", - "type": "ui_toast", - "z": "b771c342.49603", - "position": "dialog", - "displayTime": "3", - "highlight": "", - "sendall": true, - "outputs": 1, - "ok": "OK", - "cancel": "", - "raw": false, - "topic": "", - "name": "", - "x": 710, - "y": 980, - "wires": [[]] - }, - { - "id": "986d960a.c75908", - "type": "function", - "z": "b771c342.49603", - "name": "Check form", - "func": "var sample_project= global.get(\"sample_project\");\nvar sample_id= global.get(\"sample_id\");\nvar sample_operator= global.get(\"sample_operator\");\nvar sample_sampling_gear= global.get(\"sample_sampling_gear\");\nvar object_lat= global.get(\"object_lat\");\nvar object_lon= global.get(\"object_lon\");\nvar object_date= global.get(\"object_date\");\nvar object_time= global.get(\"object_time\");\nif (sample_project === undefined || sample_project === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Sample project\"\n return [null, msg];\n}\n\nelse if (sample_id === undefined || sample_id === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Sample ID\"\n return [null, msg];\n}\n\nelse if (sample_operator === undefined || sample_operator === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Sample operator\"\n return [null, msg];\n}\n\nelse if (sample_sampling_gear === undefined || sample_sampling_gear === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Sample sampling gear\"\n return [null, msg];\n}\n\nelse if (object_lat === undefined || object_lat === null) {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Latitude of sample\"\n return [null, msg];\n}\n\nelse if (object_lon === undefined || object_lon === null) {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Longitude of sample\"\n return [null, msg];\n}\n\nelse if (object_date === undefined || object_date === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Date of sample\"\n return [null, msg];\n}\n\nelse if (object_time === undefined || object_time === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Time of sample\"\n return [null, msg];\n}\nelse if (sample_sampling_gear.startsWith(\"net\")){\n var object_lat_end = global.get(\"object_lat_end\");\n var object_lon_end = global.get(\"object_lon_end\");\n var object_date_end = global.get(\"object_date_end\");\n var object_time_end = global.get(\"object_time_end\");\n var sample_gear_net_opening = global.get(\"sample_gear_net_opening\");\n\n if (object_lat_end === undefined || object_lat_end === null) {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Latitude of retrieval\"\n return [null, msg];\n }\n \n else if (object_lon_end === undefined || object_lon_end === null) {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Longitude of retrieval\"\n return [null, msg];\n }\n \n else if (object_date_end === undefined || object_date_end === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Date of retrieval\"\n return [null, msg];\n }\n \n else if (object_time_end === undefined || object_time_end === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Time of retrieval\"\n return [null, msg];\n }\n \n else if (sample_gear_net_opening === undefined || sample_gear_net_opening === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Net opening dimension\"\n return [null, msg];\n }\n \n if (sample_sampling_gear == \"net_decknet\"){\n var sample_total_volume = global.get(\"sample_total_volume\");\n if (sample_total_volume === undefined || sample_total_volume === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Decknet flowmeter readings\"\n return [null, msg];\n }\n }\n}\nmsg.topic = \"config_save\"\nmsg.payload={\"tab\":\"Optic Configuration\"};\n\nreturn [msg, null];", - "outputs": 2, - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 470, - "y": 940, - "wires": [["726a7822.cd6298", "e2b277c1.07283"], ["52f6b103.1efb6"]], - "outputLabels": ["message", "error"] - }, - { - "id": "18f44504.cac66b", - "type": "gpsd", - "z": "b771c342.49603", - "name": "", - "hostname": "localhost", - "port": "2947", - "tpv": true, - "sky": false, - "info": false, - "device": false, - "gst": false, - "att": false, - "x": 250, - "y": 1240, - "wires": [ - [ - "258b4562.9f778a", - "54e37580.fdc31c", - "cc21ca16.b92928", - "4a4de52c.cf2884", - "73c4a14a.9b93c8" - ] - ] - }, - { - "id": "726a7822.cd6298", - "type": "ui_ui_control", - "z": "b771c342.49603", - "name": "", - "events": "change", - "x": 700, - "y": 900, - "wires": [[]] - }, - { - "id": "16de754c.cc969b", - "type": "ui_button", - "z": "b771c342.49603", - "name": "", - "group": "5517c651.b2f668", - "order": 1, - "width": 5, - "height": 1, - "passthru": false, - "label": "Previous", - "tooltip": "", - "color": "#097479", - "bgcolor": "white", - "icon": "keyboard_return", - "payload": "{\"tab\":\"Home\"}", - "payloadType": "json", - "topic": "", - "x": 240, - "y": 880, - "wires": [["222c851d.5d0a3a"]] - }, - { - "id": "84f3d040.5f7ea", - "type": "ui_button", - "z": "b771c342.49603", - "name": "", - "group": "5517c651.b2f668", - "order": 2, - "width": 5, - "height": 1, - "passthru": false, - "label": "Continue", - "tooltip": "", - "color": "#097479", - "bgcolor": "white", - "icon": "keyboard_tab", - "payload": "{\"tab\":\"Home\"}", - "payloadType": "json", - "topic": "", - "x": 240, - "y": 940, - "wires": [["986d960a.c75908"]] - }, - { - "id": "d027a6bf.7049e8", - "type": "function", - "z": "b771c342.49603", - "name": "get sample_projet", - "func": "msg.payload = msg.payload.sample_project;\nreturn msg;", - "outputs": 1, - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 310, - "y": 40, - "wires": [["9c882b37.fde668"]] - }, - { - "id": "5a811caf.0f3144", - "type": "function", - "z": "b771c342.49603", - "name": "get sample_ship", - "func": "msg.payload = msg.payload.sample_ship;\nreturn msg;", - "outputs": 1, - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 300, - "y": 80, - "wires": [["4557d689.a4fa88"]] - }, - { - "id": "45911c98.2bd83c", - "type": "function", - "z": "b771c342.49603", - "name": "get sample_id", - "func": "msg.payload = msg.payload.sample_id;\nreturn msg;", - "outputs": 1, - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 300, - "y": 120, - "wires": [["94eb4221.9b92c"]] - }, - { - "id": "1e09a4ab.72996b", - "type": "function", - "z": "b771c342.49603", - "name": "get sample_operator", - "func": "msg.payload = msg.payload.sample_operator;\nreturn msg;", - "outputs": 1, - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 320, - "y": 160, - "wires": [["82c5fc77.59c97"]] - }, - { - "id": "a3272681.f271c8", - "type": "function", - "z": "b771c342.49603", - "name": "get sample_sampling_gear", - "func": "msg.topic = \"sample_sampling_gear\"\nif (msg.payload.sample_sampling_gear === undefined){\n msg.payload = \"net\";\n}\nelse\n{\n msg.payload = msg.payload.sample_sampling_gear;\n}\nreturn msg;", - "outputs": 1, - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 340, - "y": 200, - "wires": [["fcfc31ae.af3af"]] - }, - { - "id": "a6907a38.f6611", - "type": "subflow:1c24ad9c.bebec2", - "z": "b771c342.49603", - "name": "", - "env": [], - "x": 70, - "y": 220, - "wires": [ - [ - "d027a6bf.7049e8", - "5a811caf.0f3144", - "45911c98.2bd83c", - "1e09a4ab.72996b", - "8dff1648.82e42", - "9f04c5ec.75f3d8", - "f408a273.4fb538", - "e73fd87d.d24e4", - "489c8e06.cc7d6", - "a3272681.f271c8" - ] - ] - }, - { - "id": "e2b277c1.07283", - "type": "subflow:1c24ad9c.bebec2", - "z": "b771c342.49603", - "name": "", - "env": [], - "x": 690, - "y": 940, - "wires": [[]] - }, - { - "id": "7116e906.9f50f", - "type": "ui_text", - "z": "b771c342.49603", - "group": "fc5e4e6f.5b1c8", - "order": 1, - "width": 10, - "height": 1, - "name": "GPS Status Display", - "label": "GPS Status:", - "format": "{{msg.payload}}", - "layout": "row-center", - "x": 730, - "y": 1080, - "wires": [] - }, - { - "id": "9c7f7fc9.c8d3a", - "type": "ui_text_input", - "z": "b771c342.49603", - "name": "object_depth_max", - "label": "Max sampling depth (m)", - "tooltip": "in m", - "group": "3e1ba03d.f01d8", - "order": 10, - "width": 5, - "height": 1, - "passthru": true, - "mode": "number", - "delay": "300", - "topic": "object_depth_max", - "sendOnBlur": true, - "className": "", - "topicType": "str", - "x": 650, - "y": 240, - "wires": [["9f501f49.45645"]] - }, - { - "id": "317eeeb7.8d3042", - "type": "ui_text_input", - "z": "b771c342.49603", - "name": "object_depth_min", - "label": "Min sampling depth (m)", - "tooltip": "in m", - "group": "3e1ba03d.f01d8", - "order": 9, - "width": 5, - "height": 1, - "passthru": true, - "mode": "number", - "delay": "300", - "topic": "object_depth_min", - "sendOnBlur": true, - "className": "", - "topicType": "str", - "x": 650, - "y": 280, - "wires": [["9f501f49.45645"]] - }, - { - "id": "cbb123ab.fd3428", - "type": "ui_ui_control", - "z": "b771c342.49603", - "name": "show/hide net groups", - "events": "change", - "x": 1320, - "y": 300, - "wires": [[]] - }, - { - "id": "642ff403.1ed91c", - "type": "ui_text_input", - "z": "b771c342.49603", - "name": "sample_concentrated_sample_volume", - "label": "Concentrated sample volume (mL)", - "tooltip": "Volume extracted from the net codend (in mL)", - "group": "3e1ba03d.f01d8", - "order": 12, - "width": 10, - "height": 1, - "passthru": true, - "mode": "number", - "delay": "300", - "topic": "sample_concentrated_sample_volume", - "sendOnBlur": true, - "className": "", - "topicType": "str", - "x": 590, - "y": 440, - "wires": [["9f501f49.45645"]] - }, - { - "id": "e967b844.46aa48", - "type": "ui_text_input", - "z": "b771c342.49603", - "name": "sample_gear_net_opening", - "label": "Net opening dimension (mm)", - "tooltip": "Size of the net mouth opening (in mm)", - "group": "cf5d9f0e.d57e7", - "order": 1, - "width": 10, - "height": 1, - "passthru": true, - "mode": "number", - "delay": "300", - "topic": "sample_gear_net_opening", - "sendOnBlur": true, - "className": "", - "topicType": "str", - "x": 620, - "y": 320, - "wires": [["9f501f49.45645"]] - }, - { - "id": "c0ce5626.b6c5", - "type": "ui_toast", - "z": "b771c342.49603", - "position": "dialog", - "displayTime": "3", - "highlight": "", - "sendall": true, - "outputs": 1, - "ok": "OK", - "cancel": "", - "raw": false, - "topic": "", - "name": "", - "x": 1230, - "y": 620, - "wires": [[]] - }, - { - "id": "c33f1124.af6688", - "type": "ui_form", - "z": "b771c342.49603", - "name": "sample_location", - "label": "Sample Location", - "group": "cef1e703.bcf3c8", - "order": 1, - "width": 0, - "height": 0, - "options": [ - { - "label": "Latitude (36.574439°N or 36°57.4439'N)", - "value": "object_lat", - "type": "text", - "required": true, - "rows": null - }, - { - "label": "Longitude (110.42100°W or 110°4.2100'W)", - "value": "object_lon", - "type": "text", - "required": true, - "rows": null - }, - { - "label": "Date (YYYY-MM-DD, UTC)", - "value": "object_date", - "type": "text", - "required": true, - "rows": null - }, - { - "label": "Time (HH:MM(:SS), UTC 24h)", - "value": "object_time", - "type": "text", - "required": true, - "rows": null - } - ], - "formValue": { - "object_lat": "", - "object_lon": "", - "object_date": "", - "object_time": "" - }, - "payload": "", - "submit": "Validate", - "cancel": "Reset", - "topic": "sample_location", - "x": 660, - "y": 580, - "wires": [["14658615.47c862", "3318a1aaa70fc2ee"]] - }, - { - "id": "358908cd.416ab", - "type": "ui_form", - "z": "b771c342.49603", - "name": "net_throw_location", - "label": "Net Throw Location", - "group": "cf5d9f0e.d57e7", - "order": 3, - "width": 0, - "height": 0, - "options": [ - { - "label": "Latitude (36.574439°N or 36°57.4439'N)", - "value": "object_lat", - "type": "text", - "required": true, - "rows": null - }, - { - "label": "Longitude (110.42100°W or 110°4.2100'W)", - "value": "object_lon", - "type": "text", - "required": true, - "rows": null - }, - { - "label": "Date (YYYY-MM-DD UTC)", - "value": "object_date", - "type": "text", - "required": true, - "rows": null - }, - { - "label": "Time (HH:MM, UTC 24h)", - "value": "object_time", - "type": "text", - "required": true, - "rows": null - } - ], - "formValue": { - "object_lat": "", - "object_lon": "", - "object_date": "", - "object_time": "" - }, - "payload": "", - "submit": "Validate", - "cancel": "", - "topic": "net_throw_location", - "topicType": "str", - "splitLayout": false, - "className": "", - "x": 650, - "y": 620, - "wires": [["14658615.47c862", "cc67c97f55a340d3"]] - }, - { - "id": "56d40584.eff4e4", - "type": "ui_form", - "z": "b771c342.49603", - "name": "net_retrieval_location", - "label": "Net Retrieval Location", - "group": "cf5d9f0e.d57e7", - "order": 4, - "width": 0, - "height": 0, - "options": [ - { - "label": "Latitude (36.574439°N or 36°57.4439'N)", - "value": "object_lat_end", - "type": "text", - "required": true, - "rows": null - }, - { - "label": "Longitude (110.42100°W or 110°4.2100'W)", - "value": "object_lon_end", - "type": "text", - "required": true, - "rows": null - }, - { - "label": "Date (YYYY-MM-DD UTC)", - "value": "object_date_end", - "type": "text", - "required": true, - "rows": null - }, - { - "label": "Time (HH:MM, UTC 24h)", - "value": "object_time_end", - "type": "text", - "required": true, - "rows": null - } - ], - "formValue": { - "object_lat_end": "", - "object_lon_end": "", - "object_date_end": "", - "object_time_end": "" - }, - "payload": "", - "submit": "Validate", - "cancel": "", - "topic": "net_retrieval_location", - "topicType": "str", - "splitLayout": false, - "x": 640, - "y": 660, - "wires": [["14658615.47c862", "9c8f370d124a55e4"]] - }, - { - "id": "14658615.47c862", - "type": "function", - "z": "b771c342.49603", - "name": "Validate Location / Timestamp", - "func": "// Code added here will be run once\n// whenever the node is started.\nfunction ConvertDDMMToDD(input) {\n // Input Format 36°57.4439'N, 110°4.2100'W\n // From https://stackoverflow.com/questions/1140189/converting-latitude-and-longitude-to-decimal-values\n if (!input.match(/\\d+°\\d+\\.*\\d*\\'[NSEW]/)){\n \treturn \"parsing error\"\n }\n var parts = input.split(/[^\\d.\\w]+/)\n if (parts.length != 3){\n \treturn \"parsing error\"\n }\n var dd = Number(parts[0]) + Number(parts[1])/60\n return dd.toFixed(6) + parts[2]\n}\n\nfunction ValidateCoordinates(input, lat){\n // Input Format 36.574439°N, 110.42100°W\n // Or 36°57.4439'N, 110°4.2100'W\n if (input.match(\"'\")){\n input = ConvertDDMMToDD(input)\n }\n \n var error = {}\n\n if (input.startsWith(\"parsing error\")){\n error.topic = \"Error with the \"\n error.payload = \"You need to respect the format example, 36.574439°N or 36°57.4439'N\"\n return [null, error]\n }\n \n var direction = input.match(/[NSEW]/)\n var position = input.match(/[\\+\\-\\d\\.]+/)\n \n if (direction === null){\n error.topic = \"Error with the \"\n error.payload = \"You need to explicitely enter N/S/E/W\"\n return [null, error]\n }\n \n // Test that position is only made of digits!\n if(/^[\\+\\-]/.test(position)){\n error.topic = \"Error with the \"\n error.payload = \"Use of +/- sign is inconsistent with N/S/E/W letter! Please only use N/S/E/W!\"\n return [null, error]\n }\n \n var dd = Number(position)\n if (lat){\n // Check latitude\n if (direction == \"S\" || direction == \"N\") {\n if (dd>90.0){\n error.topic = \"Error with the \"\n error.payload = \"Latitude is more than 90°\"\n return [null, error]\n }\n }\n if (direction == \"W\" || direction == \"E\") {\n error.topic = \"Error with the \"\n error.payload = \"This is not a Latitude!\"\n return [null, error]\n }\n }\n else{\n // Check longitude\n if (direction == \"W\" || direction == \"E\") {\n if (dd>180.0){\n error.topic = \"Error with the \"\n error.payload = \"Longitude is more than 180°\"\n return [null, error]\n }\n }\n if (direction == \"N\" || direction == \"S\") {\n error.topic = \"Error with the \"\n error.payload = \"This is not a Longitude!\"\n return [null, error]\n }\n }\n \n if (direction == \"S\" || direction == \"W\") {\n dd = dd * -1\n } // Don't do anything for N or E\n return [dd.toFixed(4), null]\n \n}\n\nfunction ValidateDate(input){\n // Input Format 2020-12-25\n var error = {};\n \n if (! /20\\d{2}-[0-1]\\d-[0-3]\\d/.test(input)){\n error.topic = \"Error with the date\";\n error.payload = \"The date should respect the ISO format YYYY-MM-DD\";\n return [null, error];\n }\n else {\n var date = input.match(/\\d+/g);\n if (!((2000 < date[0]) && (date[0] < 2100))){\n error.topic = \"Error with the date\"\n error.payload = \"The year should be between 2000 and 2100\"\n return [null, error]\n }\n else if (!((0 < date[1]) && (date[1] <= 12))){\n error.topic = \"Error with the date\"\n error.payload = \"The month should be between 01 and 12\"\n return [null, error]\n }\n else if (!((0 < date[2]) && (date[2] <= 31))){\n error.topic = \"Error with the date\"\n error.payload = \"The day should be between 01 and 31\"\n return [null, error]\n }\n }\n return [input.replace(/-/g, ''), null]\n}\n\nfunction ValidateTime(input){\n // Input Format 12:00\n var error = {}\n \n if (! /[0-2]?\\d:[0-5]\\d/.test(input)){\n error.topic = \"Error with the time\"\n error.payload = \"The date should respect the ISO format HH:MM\"\n return [null, error]\n }\n else {\n var time = input.match(/\\d+/g)\n \n if (!((0 <= time[0]) && (time[0] < 24))){\n error.topic = \"Error with the time\"\n error.payload = \"The hours should be 0 and 23.\"\n return [null, error]\n }\n else if (!((0 <= time[1]) && (time[1] < 60))){\n error.topic = \"Error with the time\"\n error.payload = \"The minutes should be between 0 and 59\"\n return [null, error]\n }\n }\n return [input.replace(/:/g, ''), null]\n}\n\n\nvar ret\nvar payload_for_form = {payload:{}}\nmsg.valid = false\n\nif (msg.topic == \"culture_timestamp\"){\n ret = ValidateDate(msg.payload.object_date)\n if (ret[1] !== null){\n msg.topic = ret[1].topic + \" of the sample\"\n msg.payload = ret[1].payload\n return [msg, null]\n }\n global.set(\"object_date\", ret[0])\n \n ret = ValidateTime(msg.payload.object_time)\n if (ret[1] !== null){\n msg.topic = ret[1].topic + \" of the sample\"\n msg.payload = ret[1].payload\n return [msg, null]\n }\n global.set(\"object_time\", ret[0])\n return [{topic: \"Date and time format valid!\", payload: \"All good!\", valid: true}, payload_for_form]\n}\nelse if (msg.topic == \"net_retrieval_location\"){\n ret = ValidateCoordinates(msg.payload.object_lat_end, true);\n if (ret[1] !== null){\n msg.topic = ret[1].topic + \" Latitude\"\n msg.payload = ret[1].payload\n return [msg, null]\n }\n global.set(\"object_lat_end\", ret[0])\n ret = ValidateCoordinates(msg.payload.object_lon_end, false)\n if (ret[1] !== null){\n msg.topic = ret[1].topic + \" Longitude\"\n msg.payload = ret[1].payload\n return [msg, null]\n }\n global.set(\"object_lon_end\", ret[0]);\n \n ret = ValidateDate(msg.payload.object_date_end)\n if (ret[1] !== null){\n msg.topic = ret[1].topic + \" of the sample retrieval\"\n msg.payload = ret[1].payload\n return [msg, null]\n }\n global.set(\"object_date_end\", ret[0])\n \n ret = ValidateTime(msg.payload.object_time_end)\n if (ret[1] !== null){\n msg.topic = ret[1].topic + \" of the sample retrieval\"\n msg.payload = ret[1].payload\n return [msg, null]\n }\n global.set(\"object_time_end\", ret[0])\n}\nelse{\n ret = ValidateCoordinates(msg.payload.object_lat, true);\n if (ret[1] !== null){\n msg.topic = ret[1].topic + \" Latitude\";\n msg.payload = ret[1].payload\n return [msg, null]\n }\n global.set(\"object_lat\", ret[0]);\n payload_for_form.payload[\"object_lat_end\"] = msg.payload.object_lat;\n \n ret = ValidateCoordinates(msg.payload.object_lon, false);\n if (ret[1] !== null){\n msg.topic = ret[1].topic + \" Longitude\"\n msg.payload = ret[1].payload\n return [msg, null]\n }\n global.set(\"object_lon\", ret[0])\n payload_for_form.payload[\"object_lon_end\"] = msg.payload.object_lon;\n\n ret = ValidateDate(msg.payload.object_date)\n if (ret[1] !== null){\n msg.topic = ret[1].topic + \" of the sample\"\n msg.payload = ret[1].payload\n return [msg, null]\n }\n global.set(\"object_date\", ret[0])\n payload_for_form.payload[\"object_date_end\"] = msg.payload.object_date;\n \n ret = ValidateTime(msg.payload.object_time)\n if (ret[1] !== null){\n msg.topic = ret[1].topic + \" of the sample\"\n msg.payload = ret[1].payload\n return [msg, null]\n }\n global.set(\"object_time\", ret[0])\n payload_for_form.payload[\"object_time_end\"] = msg.payload.object_time;\n}\nreturn [{topic: \"Coordinates valid!\", payload: \"All good!\", valid: true}, payload_for_form]\n", - "outputs": 2, - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 930, - "y": 620, - "wires": [["c0ce5626.b6c5", "9a18a4b4.178448"], ["56d40584.eff4e4"]], - "inputLabels": ["Location form data"], - "outputLabels": ["Message", "Location validated"] - }, - { - "id": "46eb1bf8.3dc5f4", - "type": "function", - "z": "b771c342.49603", - "name": "Net check", - "func": "var decknet = {}\nvar activation_msg = {}\n\nif (msg.payload.startsWith(\"net_decknet\")){\n decknet.enabled = true;\n}\nelse {\n decknet.enabled = false;\n}\n\nif (msg.payload.startsWith(\"net\")){\n activation_msg.payload = {\"group\":{\"show\":[\"Sample_Net_Metadata\"],\"hide\":[\"Sample_Sample_Location\",\"Sample_Culture_Date_and_Time\"]}};\n}\nelse if (msg.payload != \"culture\" && msg.payload != \"test\"){\n activation_msg.payload = {\"group\":{\"show\":[\"Sample_Sample_Location\"], \"hide\":[\"Sample_Net_Metadata\",\"Sample_Culture_Date_and_Time\"]}};\n}\n\n\nreturn [decknet, activation_msg];", - "outputs": 2, - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 1080, - "y": 240, - "wires": [ - ["516375fd.2ed61c", "470e382a.25691", "fbe32ac8.ff6a38"], - ["cbb123ab.fd3428"] - ], - "outputLabels": ["decknet activation", "group display control"] - }, - { - "id": "516375fd.2ed61c", - "type": "ui_text_input", - "z": "b771c342.49603", - "name": "sample_total_flowmeter_start", - "label": "Decknet flowmeter start", - "tooltip": "in L", - "group": "cf5d9f0e.d57e7", - "order": 6, - "width": 5, - "height": 1, - "passthru": false, - "mode": "text", - "delay": "300", - "topic": "sample_total_flowmeter_start", - "sendOnBlur": true, - "className": "", - "topicType": "str", - "x": 1340, - "y": 220, - "wires": [["e9bc112c.eb75f8"]] - }, - { - "id": "470e382a.25691", - "type": "ui_text_input", - "z": "b771c342.49603", - "name": "sample_total_flowmeter_end", - "label": "Decknet flowmeter end", - "tooltip": "in L", - "group": "cf5d9f0e.d57e7", - "order": 7, - "width": 5, - "height": 1, - "passthru": false, - "mode": "text", - "delay": "300", - "topic": "sample_total_flowmeter_end", - "sendOnBlur": true, - "className": "", - "topicType": "str", - "x": 1340, - "y": 260, - "wires": [["e9bc112c.eb75f8"]] - }, - { - "id": "fbe32ac8.ff6a38", - "type": "ui_template", - "z": "b771c342.49603", - "group": "cf5d9f0e.d57e7", - "name": "Decknet flowmeter read", - "order": 5, - "width": 10, - "height": 1, - "format": "
\n

Decknet flowmeter readings

\n

Those values are used to calculate sample_total_volume. Values are in L.

\n
\n", - "storeOutMessages": true, - "fwdInMessages": true, - "resendOnRefresh": true, - "templateScope": "local", - "x": 1330, - "y": 180, - "wires": [[]] - }, - { - "id": "f408a273.4fb538", - "type": "function", - "z": "b771c342.49603", - "name": "get sample_gear_net_opening", - "func": "if (msg.payload.sample_gear_net_opening === null){\n msg.payload = 0;\n global.set(\"sample_gear_net_opening\",msg.payload);\n}\nelse\n{\n msg.payload = msg.payload.sample_gear_net_opening;\n}\nreturn msg;", - "outputs": 1, - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 350, - "y": 320, - "wires": [["e967b844.46aa48"]] - }, - { - "id": "8dff1648.82e42", - "type": "function", - "z": "b771c342.49603", - "name": "get object_depth_max", - "func": "if (msg.payload.object_depth_max === null){\n msg.payload = 0;\n global.set(\"object_depth_max\",msg.payload);\n}\nelse\n{\n msg.payload = msg.payload.object_depth_max;\n}\nreturn msg;", - "outputs": 1, - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 320, - "y": 240, - "wires": [["9c7f7fc9.c8d3a"]] - }, - { - "id": "9f04c5ec.75f3d8", - "type": "function", - "z": "b771c342.49603", - "name": "get object_depth_min", - "func": "if (msg.payload.object_depth_min === null){\n msg.payload = 0;\n global.set(\"object_depth_min\",msg.payload);\n}\nelse\n{\n msg.payload = msg.payload.object_depth_min;\n}\nreturn msg;", - "outputs": 1, - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 320, - "y": 280, - "wires": [["317eeeb7.8d3042"]] - }, - { - "id": "9a18a4b4.178448", - "type": "function", - "z": "b771c342.49603", - "name": "calculate sample_total_volume", - "func": "\n/*object_lat = 33.95 \nobject_lon = 118.4 \nobject_lat_end = 40.6333 \nobject_lon_end = 73.78333\nsample_gear_net_opening = 40*/\n\n// Copyright 1997 Ed Williams. All rights reserved\n// Adapted by Romain Bazile - Ocean Trotter - 01-2021\n\ndecpl=4 // Dec places of minutes output\n\nellipse = {\"name\":\"WSG84\", \"a\":6378.137/1.852, \"invf\":298.257223563}\n\nfunction ComputeDistance(lat1, lon1, lat2, lon2){\n var d,crs12,crs21\n var argacos\n var a,invf\n \n // lat and lon in radian\n lat1=(Math.PI/180)*lat1\n lat2=(Math.PI/180)*lat2\n lon1=(Math.PI/180)*lon1\n lon2=(Math.PI/180)*lon2\n \n //alert(\"lat1=\" + lat1 + \"lon1=\" + lon1 +\"\\nlat2=\" +lat2+ \"lon2=\"+lon2)\n \n /* get distance conversion factor */\n dc=1.852 //km\n //alert(\"dc=\" +dc)\n \n //showProps(ellipse,\"ellipse\")\n \n // elliptic code\n d=crsdist_ell(lat1,-lon1,lat2,-lon2,ellipse) // ellipse uses East negative\n d=d*dc // go to physical units\n \n //alert(\"d=\"+d+\" crs12=\"+crs12+\" crs21=\"+crs21)\n return d\n}\n\nfunction crsdist(lat1,lon1,lat2,lon2){ // radian args\n /* compute course and distance (spherical) */\n if ((lat1+lat2===0) && (Math.abs(lon1-lon2)==Math.PI) && \n (Math.abs(lat1) != (Math.PI/180)*90)){\t\n \talert(\"Course between antipodal points is undefined\")\n }\n \n d = Math.acos(Math.sin(lat1)*Math.sin(lat2)+Math.cos(lat1)*Math.cos(lat2)*Math.cos(lon1-lon2))\n return d\n}\n\nfunction crsdist_ell(glat1,glon1,glat2,glon2,ellipse){\n // glat1 initial geodetic latitude in radians N positive \n // glon1 initial geodetic longitude in radians E positive \n // glat2 final geodetic latitude in radians N positive \n // glon2 final geodetic longitude in radians E positive \n a=ellipse.a\n f=1/ellipse.invf\n //alert(\"a=\"+a+\" f=\"+f)\n var r, tu1, tu2, cu1, su1, cu2, s1, b1, f1\n var x, sx, cx, sy, cy,y, sa, c2a, cz, e, c, d\n var EPS= 0.00000000005\n var faz, baz, s\n var iter=1\n var MAXITER=100\n if ((glat1+glat2===0) && (Math.abs(glon1-glon2)==Math.PI)){\n alert(\"Course and distance between antipodal points is undefined\")\n glat1=glat1+0.00001 // allow algorithm to complete\n }\n if (glat1==glat2 && (glon1==glon2 || Math.abs(Math.abs(glon1-glon2)-2*Math.PI) < EPS)){\n alert(\"Points 1 and 2 are identical- course undefined\")\n out=new MakeArray(0)\n out.d=0\n out.crs12=0\n out.crs21=Math.PI\n return out\n }\n r = 1 - f\n tu1 = r * Math.tan (glat1)\n tu2 = r * Math.tan (glat2)\n cu1 = 1 / Math.sqrt (1 + tu1 * tu1)\n su1 = cu1 * tu1\n cu2 = 1 / Math.sqrt (1 + tu2 * tu2)\n s1 = cu1 * cu2\n b1 = s1 * tu2\n f1 = b1 * tu1\n x = glon2 - glon1\n d = x + 1 // force one pass\n while ((Math.abs(d - x) > EPS) && (iter < MAXITER))\n {\n iter=iter+1\n sx = Math.sin (x)\n // alert(\"sx=\"+sx)\n cx = Math.cos (x)\n tu1 = cu2 * sx\n tu2 = b1 - su1 * cu2 * cx\n sy = Math.sqrt(tu1 * tu1 + tu2 * tu2)\n cy = s1 * cx + f1\n y = atan2 (sy, cy)\n sa = s1 * sx / sy\n c2a = 1 - sa * sa\n cz = f1 + f1\n if (c2a > 0)\n cz = cy - cz / c2a\n e = cz * cz * 2 - 1\n c = ((-3 * c2a + 4) * f + 4) * c2a * f / 16\n d = x\n x = ((e * cy * c + cz) * sy * c + y) * sa\n x = (1 - c) * x * f + glon2 - glon1\n }\n x = Math.sqrt ((1 / (r * r) - 1) * c2a + 1)\n x +=1\n x = (x - 2) / x\n c = 1 - x\n c = (x * x / 4 + 1) / c\n d = (0.375 * x * x - 1) * x\n x = e * cy\n d = ((((sy*sy*4-3)*(1-e-e)*cz*d/6-x)*d/4+cz)*sy*d+y)*c*a*r\n if (Math.abs(iter-MAXITER)0) && (y>=0)){ out= Math.atan(y/x)}\n if ((x >0) && (y<0)) { out= Math.atan(y/x)+2*Math.PI}\n if ((x===0) && (y>0)) { out= Math.PI/2}\n if ((x===0) && (y<0)) { out= 3*Math.PI/2} \n if ((x===0) && (y===0)) {\n alert(\"atan2(0,0) undefined\")\n out= 0\n } \n return out\n}\n\nfunction showProps(obj,objName){\n var result=\"\"\n for (var i in obj){\n result +=objName + \".\" + i + \" = \" + obj[i] + \"\\n\"\n }\n alert(result)\n}\n\n\nif (msg.valid){\n msg.topic=\"sample_total_volume\"\n \n var object_lat_end = global.get(\"object_lat_end\")\n var object_lon_end = global.get(\"object_lon_end\")\n var sample_sampling_gear = global.get(\"sample_sampling_gear\")\n \n if (sample_sampling_gear.startsWith(\"net\") && sample_sampling_gear != \"net_decknet\") {\n if (!(isNaN(object_lat_end) && isNaN(object_lon_end))){\n var object_lat = global.get(\"object_lat\")\n var object_lon = global.get(\"object_lon\")\n var sample_gear_net_opening = global.get(\"sample_gear_net_opening\");\n\n distance_km = ComputeDistance(object_lat, object_lon, object_lat_end, object_lon_end)\n\n sample_total_volume = distance_km*(Math.PI*(sample_gear_net_opening/2)*(sample_gear_net_opening/2)) // liters\n sample_total_volume = Math.round(sample_total_volume + Number.EPSILON)\n msg.payload = sample_total_volume\n return msg\n }\n }\n}", - "outputs": 1, - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 930, - "y": 760, - "wires": [["4f6afc5a.81e454"]] - }, - { - "id": "4fb4e0ad.c417c", - "type": "ui_text", - "z": "b771c342.49603", - "group": "fc5e4e6f.5b1c8", - "order": 6, - "width": 5, - "height": 1, - "name": "Latitude", - "label": "Latitude", - "format": "{{msg.payload.lat.deg}}°{{msg.payload.lat.min}}'{{msg.payload.lat.sec}}{{msg.payload.lat.dir}}", - "layout": "col-center", - "x": 700, - "y": 1120, - "wires": [] - }, - { - "id": "8d2b5026.13e6e8", - "type": "ui_text", - "z": "b771c342.49603", - "group": "fc5e4e6f.5b1c8", - "order": 7, - "width": 5, - "height": 1, - "name": "Longitude", - "label": "Longitude", - "format": "{{msg.payload.lon.deg}}°{{msg.payload.lon.min}}'{{msg.payload.lon.sec}}{{msg.payload.lon.dir}}", - "layout": "col-center", - "x": 700, - "y": 1160, - "wires": [] - }, - { - "id": "258b4562.9f778a", - "type": "function", - "z": "b771c342.49603", - "name": "Convert DD to DMS", - "func": "function ConvertDDToDMS(D, lng){\n // from https://stackoverflow.com/a/5786281/2108279\n return {\n dir : D<0?lng?'W':'S':lng?'E':'N',\n deg : 0|(D<0?D=-D:D),\n min : 0|D%1*60,\n sec :(0|D*60%1*6000)/100\n };\n}\n\nmsg.payload = {\n \"lat\":ConvertDDToDMS(msg.payload.lat, false),\n \"lon\":ConvertDDToDMS(msg.payload.lon, true)\n};\nreturn msg;", - "outputs": 1, - "noerr": 0, - "initialize": "", - "finalize": "", - "x": 490, - "y": 1140, - "wires": [["4fb4e0ad.c417c", "8d2b5026.13e6e8"]] - }, - { - "id": "7c4ce5f3.62dd5c", - "type": "ui_text", - "z": "b771c342.49603", - "group": "fc5e4e6f.5b1c8", - "order": 4, - "width": 2, - "height": 1, - "name": "Speed", - "label": "Speed", - "format": "{{msg.payload}} kts", - "layout": "col-center", - "x": 690, - "y": 1200, - "wires": [] - }, - { - "id": "54e37580.fdc31c", - "type": "ui_text", - "z": "b771c342.49603", - "group": "fc5e4e6f.5b1c8", - "order": 5, - "width": 2, - "height": 1, - "name": "Direction", - "label": "Direction", - "format": "{{msg.payload.track}} °", - "layout": "col-center", - "x": 700, - "y": 1240, - "wires": [] - }, - { - "id": "cc21ca16.b92928", - "type": "function", - "z": "b771c342.49603", - "name": "GPS Mode", - "func": "switch (msg.payload.mode){\n case 1:msg.payload = \"No Fix\"; break\n case 2:msg.payload = \"2D Fix\"; break\n case 3:msg.payload = \"3D Fix\"; break\n default: msg.payload = \"No info\"\n}\nreturn msg;", - "outputs": 1, - "noerr": 0, - "initialize": "", - "finalize": "", - "x": 470, - "y": 1080, - "wires": [["7116e906.9f50f"]] - }, - { - "id": "4a4de52c.cf2884", - "type": "function", - "z": "b771c342.49603", - "name": "Speed conversion", - "func": "msg.payload = (0|msg.payload.speed) * 1.9438\nreturn msg;", - "outputs": 1, - "noerr": 0, - "initialize": "", - "finalize": "", - "x": 490, - "y": 1200, - "wires": [["7c4ce5f3.62dd5c"]] - }, - { - "id": "35ad311f.344c76", - "type": "ui_text", - "z": "b771c342.49603", - "group": "fc5e4e6f.5b1c8", - "order": 2, - "width": 5, - "height": 1, - "name": "Time", - "label": "Time", - "format": "{{msg.payload.time}}", - "layout": "col-center", - "x": 690, - "y": 1280, - "wires": [] - }, - { - "id": "e73fd87d.d24e4", - "type": "function", - "z": "b771c342.49603", - "name": "get acq_minimum_mesh", - "func": "msg.payload = msg.payload.acq_minimum_mesh;\nreturn msg;", - "outputs": 1, - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 330, - "y": 360, - "wires": [["1aad56b31b5647ce"]] - }, - { - "id": "489c8e06.cc7d6", - "type": "function", - "z": "b771c342.49603", - "name": "get acq_maximum_mesh", - "func": "msg.payload = msg.payload.acq_maximum_mesh;\nreturn msg;", - "outputs": 1, - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 330, - "y": 400, - "wires": [["10eb31a2d7a6590c"]] - }, - { - "id": "73c4a14a.9b93c8", - "type": "function", - "z": "b771c342.49603", - "name": "Convert time", - "func": "msg.payload.time = msg.payload.time.replace('T', ' ');\nreturn msg;", - "outputs": 1, - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 470, - "y": 1280, - "wires": [["35ad311f.344c76"]] - }, - { - "id": "58de1340.3cc354", - "type": "ui_text_input", - "z": "b771c342.49603", - "name": "sample_dilution_factor", - "label": "Concentration Factor", - "tooltip": "0.5 if diluted by two; 2 if concentrated by a factor 2", - "group": "3e1ba03d.f01d8", - "order": 13, - "width": 10, - "height": 1, - "passthru": true, - "mode": "number", - "delay": "300", - "topic": "sample_dilution_factor", - "sendOnBlur": true, - "className": "", - "topicType": "str", - "x": 640, - "y": 480, - "wires": [["9f501f49.45645"]] - }, - { - "id": "4f6afc5a.81e454", - "type": "ui_text_input", - "z": "b771c342.49603", - "name": "sample_total_volume", - "label": "Filtered volume (in L)", - "tooltip": "Calculated or hand filled", - "group": "3e1ba03d.f01d8", - "order": 11, - "width": 0, - "height": 0, - "passthru": true, - "mode": "text", - "delay": "300", - "topic": "sample_total_volume", - "sendOnBlur": true, - "className": "", - "topicType": "str", - "x": 1220, - "y": 760, - "wires": [["e1f2f6eb.fe1dd"]] - }, - { - "id": "e1f2f6eb.fe1dd", - "type": "function", - "z": "b771c342.49603", - "name": "set global", - "func": "global.set(msg.topic,msg.payload);", - "outputs": 1, - "noerr": 0, - "initialize": "", - "finalize": "", - "x": 1420, - "y": 760, - "wires": [[]] - }, - { - "id": "e9bc112c.eb75f8", - "type": "function", - "z": "b771c342.49603", - "name": "Calculate volume", - "func": "if (msg.topic == \"sample_total_flowmeter_start\"){\n context.set(\"sample_total_flowmeter_start\", msg.payload);\n}\nif (msg.topic == \"sample_total_flowmeter_end\"){\n context.set(\"sample_total_flowmeter_end\", msg.payload);\n}\n\nif (context.keys().length == 2){\n sample_total_volume = context.get(\"sample_total_flowmeter_end\") - context.get(\"sample_total_flowmeter_start\");\n msg.topic=\"sample_total_volume\"\n msg.payload=sample_total_volume\n return msg\n}\n", - "outputs": 1, - "noerr": 0, - "initialize": "", - "finalize": "", - "x": 1610, - "y": 240, - "wires": [["4f6afc5a.81e454"]] - }, - { - "id": "cdd4181922eecf11", - "type": "ui_text_input", - "z": "b771c342.49603", - "name": "sample_speed_through_water", - "label": "Speed Through Water (kts)", - "tooltip": "in knots", - "group": "cf5d9f0e.d57e7", - "order": 2, - "width": 10, - "height": 1, - "passthru": true, - "mode": "number", - "delay": "300", - "topic": "sample_speed_through_water", - "sendOnBlur": true, - "className": "", - "topicType": "str", - "x": 610, - "y": 520, - "wires": [["9f501f49.45645"]] - }, - { - "id": "1aad56b31b5647ce", - "type": "ui_text_input", - "z": "b771c342.49603", - "name": "acq_minimum_mesh", - "label": "Minimal fraction size (μm)", - "tooltip": "Net mesh pore size or minimal filtration mesh pore size", - "group": "3e1ba03d.f01d8", - "order": 7, - "width": 5, - "height": 1, - "passthru": true, - "mode": "number", - "delay": "300", - "topic": "acq_minimum_mesh", - "topicType": "str", - "x": 640, - "y": 360, - "wires": [["9f501f49.45645"]] - }, - { - "id": "10eb31a2d7a6590c", - "type": "ui_text_input", - "z": "b771c342.49603", - "name": "acq_maximum_mesh", - "label": "Maximal fraction size (μm)", - "tooltip": "Maximal filtration mesh pore size", - "group": "3e1ba03d.f01d8", - "order": 8, - "width": 5, - "height": 1, - "passthru": true, - "mode": "number", - "delay": "300", - "topic": "acq_maximum_mesh", - "topicType": "str", - "x": 640, - "y": 400, - "wires": [["9f501f49.45645"]] - }, - { - "id": "3ac7b631f5d8ef90", - "type": "function", - "z": "b771c342.49603", - "name": "Culture check", - "func": "var activation_msg = {}\nvar date_msg = {}\nvar timestamp=new Date().toISOString();\n\nif (msg.payload === \"culture\"){\n activation_msg.payload = {\"group\":{\"show\":[\"Sample_Culture_Date_and_Time\"],\"hide\":[\"Sample_Sample_Location\", \"Sample_Net_Metadata\"]}};\n global.set(\"object_lat\", \"-90.0000\")\n global.set(\"object_lon\", \"0.0000\")\n date_msg.payload = {\"object_date\": timestamp.split('T')[0],\n \"object_time\": timestamp.split('T')[1].split('.')[0]}\n return [activation_msg, date_msg];\n}\nelse if (msg.payload === \"test\"){\n activation_msg.payload = {\"group\":{\"hide\":[\"Sample_Culture_Date_and_Time\", \"Sample_Sample_Location\", \"Sample_Net_Metadata\"]}};\n global.set(\"object_lat\", \"-90.0000\")\n global.set(\"object_lon\", \"0.0000\")\n global.set(\"object_date\", timestamp.split('T')[0])\n global.set(\"object_time\", timestamp.split('T')[1].split('.')[0])\n return [activation_msg, null];\n}\nelse{\n return [null, null]\n}\n\n", - "outputs": 2, - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 1100, - "y": 320, - "wires": [["cbb123ab.fd3428"], ["05c6aff2afbd69cf"]], - "outputLabels": ["decknet activation", ""] - }, - { - "id": "05c6aff2afbd69cf", - "type": "ui_form", - "z": "b771c342.49603", - "name": "culture_timestamp", - "label": "Culture timestamp", - "group": "7bc0a4c416e4545c", - "order": 1, - "width": 0, - "height": 0, - "options": [ - { - "label": "Date (YYYY-MM-DD, UTC)", - "value": "object_date", - "type": "text", - "required": true, - "rows": null - }, - { - "label": "Time (HH:MM(:SS), UTC 24h)", - "value": "object_time", - "type": "text", - "required": true, - "rows": null - } - ], - "formValue": { - "object_date": "", - "object_time": "" - }, - "payload": "", - "submit": "Validate", - "cancel": "Reset", - "topic": "culture_timestamp", - "topicType": "str", - "splitLayout": false, - "className": "", - "x": 650, - "y": 700, - "wires": [["14658615.47c862", "38616e738f4f615b"]] - 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\n \"If\n
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"group": "707d9797.c8e798", - "order": 2, - "width": 1, - "height": 1, - "passthru": false, - "label": "", - "tooltip": "", - "color": "", - "bgcolor": "", - "icon": "fa-rotate-left fa-2x", - "payload": "BACKWARD", - "payloadType": "str", - "topic": "actuator/pump", - "x": 560, - "y": 280, - "wires": [["3cb96380.e575ec"]] - }, - { - "id": "2cab680b.baf888", - "type": "ui_button", - "z": "bccd1f23.87219", - "name": "Forward", - "group": "707d9797.c8e798", - "order": 4, - "width": 1, - "height": 1, - "passthru": true, - "label": "", - "tooltip": "", - "color": "", - "bgcolor": "", - "icon": "fa-rotate-right fa-2x", - "payload": "FORWARD", - "payloadType": "str", - "topic": "actuator/pump", - "x": 560, - "y": 320, - "wires": [["3cb96380.e575ec"]] - }, - { - "id": "8038414a.34461", - "type": "function", - "z": "bccd1f23.87219", - "name": "Calculate optics", - "func": "var acq_fnumber_objective = String(global.get(\"acq_fnumber_objective\"));\nvar acq_camera = global.get(\"acq_camera\")\n\n// Those values needs to be recalculated, they are not good!\nif (acq_camera == \"HQ Camera\"){\n switch(acq_fnumber_objective) {\n case \"25\":\n acq_magnification= 0.6;\n process_pixel= 1.56;\n sug_min= 60;\n sug_max= 670;\n sug_flowrate= 3;\n break;\n case \"16\":\n acq_magnification= 1.6;\n process_pixel= 1.01;\n sug_min= 40;\n sug_max= 430;\n sug_flowrate= 2.4;\n break;\n case \"12\":\n acq_magnification= 1.20;\n process_pixel= 0.79;\n sug_min= 30;\n sug_max= 340;\n sug_flowrate= 1.25;\n break;\n case \"8\":\n acq_magnification= 1.78;\n process_pixel= 0.53;\n sug_min= 20;\n sug_max= 230;\n sug_flowrate= 0.42;\n break;\n case \"6\":\n acq_magnification= 2.36;\n process_pixel= 0.41;\n sug_min= 15;\n sug_max= 170;\n sug_flowrate= 0.32;\n break;\n }\n}\nelse if (acq_camera == \"Camera v2.1\"){\n switch(acq_fnumber_objective) {\n case \"25\":\n acq_magnification= 0.6;\n process_pixel= 1.86;\n sug_min= 60;\n sug_max= 670;\n sug_flowrate= 3;\n break;\n case \"16\":\n acq_magnification= 1.6;\n process_pixel= 0.7;\n sug_min= 40;\n sug_max= 430;\n sug_flowrate= 2.4;\n break;\n case \"12\":\n acq_magnification= 1.20;\n process_pixel= 0.94;\n sug_min= 30;\n sug_max= 340;\n sug_flowrate= 1.25;\n break;\n case \"8\":\n acq_magnification= 1.78;\n process_pixel= 0.63;\n sug_min= 20;\n sug_max= 230;\n sug_flowrate= 0.42;\n break;\n case \"6\":\n acq_magnification= 2.36;\n process_pixel= 0.48;\n sug_min= 15;\n sug_max= 170;\n sug_flowrate= 0.32;\n break;\n }\n}else {\n acq_magnification= \"ERROR\";\n process_pixel= \"ERROR\";\n sug_min= \"ERROR\";\n sug_max= \"ERROR\";\n sug_flowrate= \"ERROR\";\n}\n\nvar process_pixel_fixed = global.get(\"process_pixel_fixed\")\n\nif (process_pixel_fixed !== undefined && process_pixel_fixed !== \"\") {\n process_pixel = process_pixel_fixed\n}\n\nglobal.set(\"process_pixel\",process_pixel);\n\nglobal.set(\"acq_magnification\",acq_magnification);\n\n\nreturn [{payload: acq_fnumber_objective}, {payload: acq_magnification}, {payload: process_pixel}, {payload: sug_min}, {payload: sug_max}];", - 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Sample

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id:

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project:\n

\n

ship:

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operator:\n

\n

sampling gear:\n

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concentrated volume:\n

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gear net opening:\n

\n

total volume filtered:\n

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Acquisition

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instrument:\n

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instrument id:\n

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camera:

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celltype: \n

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maximum mesh:\n

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magnification:\n

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fnumber objective:\n

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software: \n

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Object

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latitude: \n

\n

longitude: \n

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latitude end:\n

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longitude end:\n

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date:

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time:

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date end:\n

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time end:\n

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depth min:\n

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depth max:\n

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Process

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pixel: \n

\n

id:

\n
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[["d74210ef.edc15"]] - }, - { - "id": "d74210ef.edc15", - "type": "mqtt out", - "z": "baa1e3d9.cb29d", - "name": "", - "topic": "", - "qos": "", - "retain": "", - "broker": "8dc3722c.06efa8", - "x": 650, - "y": 520, - "wires": [] - }, - { - "id": "bb62da8a.ebc328", - "type": "ui_switch", - "z": "baa1e3d9.cb29d", - "name": "Pump direction", - "label": "Pump direction", - "tooltip": "BACKWARD / FORWARD", - "group": "4322c187.e73e5", - "order": 9, - "width": 5, - "height": 1, - "passthru": true, - "decouple": "false", - "topic": "pump_direction", - "style": "", - "onvalue": "FORWARD", - "onvalueType": "str", - "onicon": "", - "oncolor": "", - "offvalue": "BACKWARD", - "offvalueType": "str", - "officon": "", - "offcolor": "", - "x": 460, - "y": 560, - "wires": [["6b2239f3.41fa3"]] - }, - { - "id": "52ea7d01.711034", - "type": "function", - "z": "baa1e3d9.cb29d", - "name": "Encapsulate config", - "func": "msg.payload = {\n\t\"action\": \"update_config\",\n\t\"config\": {\n \t\"description\": {\n \t\t\"sample_project\": \"Project's name\",\n \t\t\"sample_id\": \"Sample ID\",\n \t\t\"sample_uuid\": \"Sample UUID (Autogenerated)\",\n \t\t\"sample_ship\": \"Ship's name\",\n \t\t\"sample_operator\": \"Operator's name\",\n \t\t\"sample_sampling_gear\": \"Sampling gear used\",\n \t\t\"sample_concentrated_sample_volume\": \"Volume of concentrated sample, in mL\",\n \t\t\"sample_total_volume\": \"Total volume filtered by the net used, in L\",\n \t\t\"sample_dilution_factor\": \"Dilution factor of the sample, 0.5 if diluted by 2, 2 if concentrated by 2\",\n \t\t\"sample_speed_through_water\": \"Speed of the boat through water when sampling, in kts\",\n \t\t\"acq_id\": \"Acquisition ID\",\n \t\t\"acq_uuid\": \"Acquisition UUID (Autogenerated)\",\n \t\t\"acq_instrument\": \"Instrument type\",\n \t\t\"acq_instrument_id\": \"Instrument ID\",\n \t\t\"acq_celltype\": \"Flow cell dimension thickness, in µm\",\n \t\t\"acq_minimum_mesh\": \"Minimum filtration mesh size, in µm\",\n \t\t\"acq_maximum_mesh\": \"Maximum filtration mesh size, in µm\",\n \t\t\"acq_min_esd\": \"\",\n \t\t\"acq_max_esd\": \"\",\n \t\t\"acq_volume\": \"Pumped volume, in mL\",\n\t\t \"acq_imaged_volume\": \"Total imaged volume, in mL\",\n \t\t\"acq_magnification\": \"Optical magnification\",\n \t\t\"acq_fnumber_objective\": \"Focal length of the objective, in mm\",\n \t\t\"acq_camera_name\": \"Name of the camera used\",\n \t\t\"acq_nb_frame\": \"Number of picture taken\",\n \"acq_local_datetime\": \"Instrument local datetime\",\n \"acq_camera_resolution\": \"Resolution of the images\",\n \"acq_camera_iso\": \"ISO Number of the images\",\n \"acq_camera_shutter_speed\": \"Shutter speed of the images, in µs\",\n \"acq_software\": \"Software version number\",\n \t\t\"object_date\": \"Sample collection date (or beginning if using a net)\",\n \t\t\"object_time\": \"Sample collection time (or beginning if using a net)\",\n \t\t\"object_lat\": \"Sample collection latitude (or beginning if using a net)\",\n \t\t\"object_lon\": \"Sample collection longitude (or beginning if using a net)\",\n \t\t\"object_depth_min\": \"Sample collection minimal depth, in m\",\n \t\t\"object_depth_max\": \"Sample collection maximum depth, in m\",\n \t\t\"process_pixel\": \"Pixel imaging resolution, in µm/pixel\",\n \t\t\"process_datetime\": \"Segmentation timestamp\",\n \t\t\"process_id\": \"Segmentation ID\",\n \t\t\"process_uuid\": \"Segmentation UUID (Autogenerated)\",\n \t\t\"process_source\": \"Code source link of the executed code\",\n \t\t\"process_commit\": \"Version reference of the executed code\",\n \t\t\"sample_gear_net_opening\": \"Sample mouth opening dimension, in mm\",\n \t\t\"object_date_end\": \"Sample end collection date when using a net\",\n \t\t\"object_time_end\": \"Sample end collection time when using a net\",\n \t\t\"object_lat_end\": \"Sample end collection latitude when using a net\",\n \t\t\"object_lon_end\": \"Sample end collection longitude when using a net\",\n \t},\n\t\t\"sample_project\": global.get(\"sample_project\"),\n\t\t\"sample_id\": global.get(\"sample_project\") + \"_\" + global.get(\"sample_id\"),\n\t\t\"sample_ship\": global.get(\"sample_ship\"),\n\t\t\"sample_operator\": global.get(\"sample_operator\"),\n\t\t\"sample_sampling_gear\": global.get(\"sample_sampling_gear\"),\n\t\t\"sample_concentrated_sample_volume\": global.get(\"sample_concentrated_sample_volume\"),\n\t\t\"sample_total_volume\": global.get(\"sample_total_volume\"),\n\t\t\"sample_dilution_factor\": global.get(\"sample_dilution_factor\"),\n\t\t\"sample_speed_through_water\": global.get(\"sample_speed_through_water\"),\n\n\t\t\"acq_id\": global.get(\"sample_project\") + \"_\" + global.get(\"sample_id\")+ \"_\" + global.get(\"acq_id\"),\n\t\t\"acq_instrument\": global.get(\"acq_instrument\"),\n\t\t\"acq_instrument_id\": global.get(\"acq_instrument_id\"),\n\t\t\"acq_celltype\": global.get(\"acq_celltype\"),\n\t\t\"acq_minimum_mesh\": global.get(\"acq_minimum_mesh\"),\n\t\t\"acq_maximum_mesh\": global.get(\"acq_maximum_mesh\"),\n\t\t\"acq_min_esd\": global.get(\"acq_min_esd\"),\n\t\t\"acq_max_esd\": global.get(\"acq_max_esd\"),\n\t\t\"acq_volume\": global.get(\"acq_volume\"),\n\t\t\"acq_imaged_volume\": global.get(\"acq_imaged_volume\"),\n\t\t\"acq_magnification\": global.get(\"acq_magnification\"),\n\t\t\"acq_fnumber_objective\": global.get(\"acq_fnumber_objective\"),\n\t\t\"acq_camera\": global.get(\"acq_camera\"),\n\t\t\"acq_nb_frame\": global.get(\"nb_frame\"),\n\t\t\"acq_software\": global.get(\"acq_software\"),\n\n\t\t\"object_date\": global.get(\"object_date\"),\n\t\t\"object_time\": global.get(\"object_time\"),\n\t\t\"object_lat\": global.get(\"object_lat\"),\n\t\t\"object_lon\": global.get(\"object_lon\"),\n\t\t\"object_depth_min\": global.get(\"object_depth_min\"),\n\t\t\"object_depth_max\": global.get(\"object_depth_max\"),\n\n\t\t\"process_pixel\": global.get(\"process_pixel\"),\n\t\t\"process_source\": 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"seg2": "75", - "x": 1260, - "y": 860, - "wires": [] - }, - { - "id": "9bd72495.a8a098", - "type": "ui_text", - "z": "baa1e3d9.cb29d", - "group": "4322c187.e73e5", - "order": 5, - "width": 5, - "height": 1, - "name": "Total imaged volume", - "label": "Total imaged volume", - "format": "{{msg.payload}}", - "layout": "col-center", - "x": 1200, - "y": 140, - "wires": [] - }, - { - "id": "99b11fe4.2795d", - "type": "function", - "z": "baa1e3d9.cb29d", - "name": "imaged volume calc", - "func": "camera = global.get(\"acq_camera\");\ncell = global.get(\"acq_celltype\");\nnb_frame = global.get(\"nb_frame\");\nprocess_pixel = global.get(\"process_pixel\");\n\nvar volume = 0\nif (camera == \"HQ Camera\"){\n volume = nb_frame * (process_pixel*4056*process_pixel*3040*cell/1000000000) / 1000;\n}\nelse if (camera == \"Camera v2.1\"){\n volume = nb_frame * (process_pixel*3280*process_pixel*2464*cell/1000000000) / 1000;\n}\nelse{\n msg.payload = \"The camera is not known to this system\";\n return msg;\n}\n\nglobal.set(\"acq_imaged_volume\", volume.toFixed(4))\n\nmsg.payload = volume.toFixed(2) + \" mL\"\nreturn msg;", - "outputs": 1, - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 960, - "y": 140, - "wires": [["9bd72495.a8a098"]], - "info": "### Focusing\n##### focus.py `nb_step` `orientation`\n\n- `nb_step` : **integer** (from 1 to 100000) - number of step to perform by the stage (about 31um/step)\n- `orientation` : **string** - orientation of the focus either `up` or `down`\n\nExample:\n\n python3.7 $HOME/PlanktoScope/scripts/focus.py 650 up\n" - }, - { - "id": "8e16aa2f.e40398", - "type": "ui_text", - "z": "baa1e3d9.cb29d", - "group": "4322c187.e73e5", - "order": 7, - "width": 5, - "height": 1, - "name": "Total pumped volume", - "label": "Total pumped volume", - "format": "{{msg.payload}} mL", - "layout": "col-center", - "x": 1200, - "y": 300, - "wires": [] - }, - { - "id": "67091ac0.8f9f6c", - "type": "function", - "z": "baa1e3d9.cb29d", - "name": "acq_volume calc", - "func": "var imaging_pump_volume = global.get(\"imaging_pump_volume\");\nvar nb_frame = global.get(\"nb_frame\");\nvar acq_volume = 0\n\nacq_volume = (Number(nb_frame)*Number(imaging_pump_volume)).toFixed(2)\nglobal.set(\"acq_volume\", acq_volume)\n\nmsg.payload = acq_volume\nreturn msg;", - "outputs": 1, - "noerr": 0, - "initialize": "", - "finalize": "", - "x": 950, - "y": 300, - "wires": [["8e16aa2f.e40398"]], - "info": "### Focusing\n##### focus.py `nb_step` `orientation`\n\n- `nb_step` : **integer** (from 1 to 100000) - number of step to perform by the stage (about 31um/step)\n- `orientation` : **string** - orientation of the focus either `up` or `down`\n\nExample:\n\n python3.7 $HOME/PlanktoScope/scripts/focus.py 650 up\n" - }, - { - "id": "2b9d6988.d84836", - "type": "switch", - "z": "baa1e3d9.cb29d", - "name": "", - "property": "payload", - "propertyType": "msg", - "rules": [ - { - "t": "hask", - "v": "status", - "vt": "str" - }, - { - "t": "hask", - "v": "camera_name", - "vt": "str" - } - ], - "checkall": "true", - "repair": false, - "outputs": 2, - "x": 650, - "y": 760, - "wires": [["2b009bd7.c07004"], ["3bbb756a.84190a"]] - }, - { - "id": "3bbb756a.84190a", - "type": "function", - "z": "baa1e3d9.cb29d", - "name": "set camera name", - "func": "global.set(\"acq_camera\", msg.payload.camera_name);\n\nmsg.payload = msg.payload.camera_name;\n\nreturn msg;", - "outputs": 1, - "noerr": 0, - "initialize": "", - "finalize": "", - "x": 810, - "y": 780, - "wires": [["559a8085.1d6b9"]] - }, - { - "id": "559a8085.1d6b9", - "type": "link out", - "z": "baa1e3d9.cb29d", - "name": "Camera Name", - "links": ["30067f35.532f2", "572a6daa.6004c4"], - "x": 965, - "y": 780, - "wires": [] - }, - { - "id": "49ea1123.ee1768", - "type": "ui_numeric", - "z": "baa1e3d9.cb29d", - "name": "sleep_before", - "label": "Delay to stabilize image (s)", - "tooltip": "Happens before every capture", - "group": "4322c187.e73e5", - "order": 4, - "width": 5, - "height": 1, - 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Capture progress

", - "storeOutMessages": false, - "fwdInMessages": false, - "resendOnRefresh": false, - "templateScope": "local", - "x": 1260, - "y": 820, - "wires": [[]] - }, - { - "id": "a4abb1ae.2ae418", - "type": "subflow:1c24ad9c.bebec2", - "z": "baa1e3d9.cb29d", - "name": "", - "env": [], - "x": 930, - "y": 520, - "wires": [[]] - }, - { - "id": "4be09c97f86897d9", - "type": "function", - "z": "baa1e3d9.cb29d", - "name": "get nb_frame", - "func": "msg.payload = msg.payload.nb_frame;\nreturn msg;", - "outputs": 1, - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 330, - "y": 280, - "wires": [["51b4d0df.d70a88"]] - }, - { - "id": "f573206abefa9518", - "type": "function", - "z": "baa1e3d9.cb29d", - "name": "get imaging_pump_volume", - "func": "msg.payload = msg.payload.imaging_pump_volume;\nreturn msg;", - "outputs": 1, - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 380, - "y": 320, - "wires": [["e1acc6c599033114"]] - }, - { - "id": "f948151ab4031df4", - "type": "function", - "z": "baa1e3d9.cb29d", - "name": "get sleep_before", - "func": "msg.payload = msg.payload.sleep_before;\nreturn msg;", - "outputs": 1, - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 340, - "y": 120, - "wires": [["49ea1123.ee1768"]] - }, - { - "id": "ad153212312f0347", - "type": "ui_ui_control", - "z": "baa1e3d9.cb29d", - "name": "onTab", - "events": "all", - "x": 330, - "y": 380, - "wires": [["9b69ea945b587192"]] - }, - { - "id": "9b69ea945b587192", - "type": "function", - "z": "baa1e3d9.cb29d", - "name": "check tab", - "func": "if (msg.name == \"Fluidic Acquisition\"){\n return { \"topic\": \"imager/ image\" }\n}", - "outputs": 1, - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 480, - "y": 380, - "wires": [["52ea7d01.711034"]], - "outputLabels": ["interface"] - }, - { - "id": "e1acc6c599033114", - "type": "ui_text_input", - "z": "baa1e3d9.cb29d", - "name": "imaging_pump_volume", - "label": "Pumped volume (mL)", - "tooltip": "between frames", - "group": "4322c187.e73e5", - "order": 3, - "width": 0, - "height": 0, - "passthru": true, - "mode": "text", - "delay": 300, - "topic": "imaging_pump_volume", - "sendOnBlur": true, - "className": "", - "topicType": "str", - "x": 630, - "y": 320, - "wires": [["fb887036.12429", "67091ac0.8f9f6c"]] - }, - { - "id": "f4caa15e2bbfd6e7", - "type": "ui_template", - "z": "baa1e3d9.cb29d", - "group": "4322c187.e73e5", - "name": "Start Acquisition", - "order": 13, - "width": "5", - "height": "1", - "format": "\n\n", - "storeOutMessages": false, - "fwdInMessages": false, - "resendOnRefresh": false, - "templateScope": "local", - "className": "", - "x": 460, - "y": 480, - "wires": [["c9f510c0.7d1328"]] - }, - { - "id": "9d6abe67.6bb3d", - "type": "ui_button", - "z": "cb95299c.2817c8", - "name": "", - "group": "64903b47.4034e4", - "order": 1, - "width": 0, - "height": 0, - "passthru": false, - "label": "Home", - "tooltip": "", - "color": "", - "bgcolor": "", - "icon": "home", - "payload": "{\"tab\":\"Home\"}", - "payloadType": "json", - "topic": "", - "x": 430, - "y": 600, - "wires": [["f0fb77cf.8f1c28"]] - }, - { - "id": "f0fb77cf.8f1c28", - "type": "ui_ui_control", - "z": "cb95299c.2817c8", - "name": "", - "events": "change", - "x": 740, - "y": 600, - "wires": [[]] - }, - { - "id": "8ec68b82.17e3d8", - "type": "ui_button", - "z": "cb95299c.2817c8", - "name": "Start segmentation", - "group": "abeb6dad.635a2", - "order": 10, - "width": 5, - "height": 1, - "passthru": false, - "label": "Start segmentation", - "tooltip": "", - "color": "", - "bgcolor": "", - "icon": "", - "payload": "{\"action\":\"segment\"}", - "payloadType": "json", - "topic": "segmenter/segment", - "x": 370, - "y": 460, - "wires": [["33c28dc1.238002", "c72a1064.1ec388"]] - }, - { - "id": "27be7971.b3fbce", - "type": "ui_button", - "z": "cb95299c.2817c8", - "d": true, - "name": "Stop segmentation", - "group": "abeb6dad.635a2", - "order": 12, - "width": 4, - "height": 1, - "passthru": true, - "label": "Stop segmentation", - "tooltip": "", - "color": "", - "bgcolor": "#AD1625", - "icon": "", - "payload": "{\"action\":\"stop\"}", - "payloadType": "json", - "topic": "segmenter/segment", - "x": 370, - "y": 520, - "wires": [["16f3cef4.0acac9"]] - }, - { - "id": "16f3cef4.0acac9", - "type": "mqtt out", - "z": "cb95299c.2817c8", - "name": "", - "topic": "", - "qos": "", - "retain": "", - "broker": "8dc3722c.06efa8", - "x": 850, - "y": 520, - "wires": [] - }, - { - "id": "8f3788f6.ddcf98", - "type": "function", - "z": "cb95299c.2817c8", - "name": "obj_counter", - "func": "obj_counter = flow.get('obj_counter')\nobj_counter = obj_counter + 1\nflow.set('obj_counter', obj_counter)\nmsg.payload = obj_counter\nmsg.topic = \"object count\"\nreturn msg", - "outputs": 1, - "noerr": 0, - "initialize": "", - "finalize": "", - "x": 810, - "y": 800, - "wires": [["fa3b7929.ac7da8", "9d53dbe2.dbffe8"]] - }, - { - "id": "aa38dbbc.cf0a9", - "type": "switch", - "z": "cb95299c.2817c8", - "name": "Segmenter", - 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"removeOlderUnit": "3600", - "cutout": 0, - "useOneColor": true, - "useUTC": false, - "colors": [ - "#1f77b4", - "#aec7e8", - "#ff7f0e", - "#2ca02c", - "#98df8a", - "#d62728", - "#ff9896", - "#9467bd", - "#c5b0d5" - ], - "outputs": 1, - "x": 1340, - "y": 840, - "wires": [[]] - }, - { - "id": "a4f0f0d1.3aca88", - "type": "ui_toast", - "z": "cb95299c.2817c8", - "position": "top right", - "displayTime": "5", - "highlight": "", - "sendall": true, - "outputs": 0, - "ok": "OK", - "cancel": "", - "raw": false, - "topic": "", - "name": "", - "x": 1340, - "y": 680, - "wires": [] - }, - { - "id": "49af3d24.1799e4", - "type": "debug", - "z": "cb95299c.2817c8", - "name": "segmentation name", - "active": true, - "tosidebar": true, - "console": false, - "tostatus": false, - "complete": "true", - "targetType": "full", - "statusVal": "", - "statusType": "auto", - "x": 830, - "y": 760, - "wires": [] - }, - { - "id": "7088a5be.0c79a4", - "type": "template", - "z": "cb95299c.2817c8", - "name": "Create sentence", - "field": "payload", - "fieldType": "msg", - "format": "handlebars", - "syntax": "mustache", - "template": "The {{topic}} is {{payload.status}}", - "output": "str", - "x": 1100, - "y": 680, - "wires": [["a4f0f0d1.3aca88"]] - }, - { - "id": "b9a23b91.93638", - "type": "change", - "z": "cb95299c.2817c8", - "name": "Remove high-level topic", - "rules": [ - { - "t": "change", - "p": "topic", - "pt": "msg", - "from": "status/", - "fromt": "str", + "reg": false, + "x": 640, + "y": 440, + "wires": [ + [ + "cd1987c7.027f58" + ] + ] + }, + { + "id": "cd1987c7.027f58", + "type": "ui_switch", + "z": "1eaf21c8.f7a21e", + "name": "stepper_reverse", + "label": "Invert stepper output", + "tooltip": "Stepper 1 is controlled by output 1 or the other way around", + "group": "6be36295.0ab324", + "order": 5, + "width": 0, + "height": 0, + "passthru": false, + "decouple": "false", + "topic": "stepper_reverse", + "style": "", + "onvalue": "true", + "onvalueType": "bool", + "onicon": "", + "oncolor": "", + "offvalue": "false", + "offvalueType": "bool", + "officon": "", + "offcolor": "", + "x": 940, + "y": 440, + "wires": [ + [ + "8e3b3d3c.955148", + "2068e7f.f4efb18" + ] + ] + }, + { + "id": "54ba7f16.709ad8", + "type": "change", + "z": "1eaf21c8.f7a21e", + "name": "Get pump_steps_per_ml", + "rules": [ + { + "t": "set", + "p": "payload", + "pt": "msg", + "to": "payload.pump_steps_per_ml", + "tot": "msg" + } + ], + "action": "", + "property": "", + "from": "", "to": "", - "tot": "str" - } - ], - "action": "", - "property": "", - "from": "", - "to": "", - "reg": false, - "x": 850, - "y": 680, - "wires": [["7088a5be.0c79a4"]] - }, - { - "id": "6919465f.332e5", - "type": "ui_text", - "z": "cb95299c.2817c8", - "group": "46be9c86.dea684", - "order": 1, - "width": 10, - "height": 1, - "name": "segmenter", - "label": "Segmenter status:", - "format": "{{msg.payload.status}}", - "layout": "row-spread", - "x": 810, - "y": 720, - "wires": [] - }, - { - "id": "fa3b7929.ac7da8", - "type": "ui_text", - "z": "cb95299c.2817c8", - "group": "46be9c86.dea684", - "order": 5, - "width": 4, - "height": 1, - "name": "counter", - "label": "", - "format": "{{msg.payload}}", - "layout": "col-center", - "x": 1320, - "y": 800, - "wires": [] - }, - { - "id": "640ece83.88cab", - "type": "inject", - "z": "cb95299c.2817c8", - "name": "Init graphs", - "props": [ - { - "p": "payload" - }, - { - "p": "topic", - "vt": "str" - } - ], - "repeat": "", - "crontab": "", - "once": true, - "onceDelay": 0.1, - "topic": "object count", - "payload": "0", - "payloadType": "num", - "x": 810, - "y": 880, - "wires": [["4f3f7c4a.cb21c4"]] - }, - { - "id": "25867454.a8e334", - "type": "link in", - "z": "cb95299c.2817c8", - "name": "Segmenter module status", - "links": ["dcf5bd45.16a8d"], - "x": 295, - "y": 740, - "wires": [["aa38dbbc.cf0a9"]] - }, - { - "id": "c8749cbb.55254", - "type": "function", - "z": "cb95299c.2817c8", - "name": "set global", - "func": "global.set(msg.topic, msg.payload);", - "outputs": 1, - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 960, - "y": 380, - "wires": [[]] - }, - { - "id": "d43c3ed9.e6cb1", - "type": "ui_template", - "z": "cb95299c.2817c8", - "group": "46be9c86.dea684", - "name": "Object counts", - "order": 3, - "width": 0, - "height": 0, - "format": "

Object counts

", - "storeOutMessages": true, - "fwdInMessages": true, - "resendOnRefresh": true, - "templateScope": "local", - "className": "", - "x": 1340, - "y": 760, - "wires": [[]] - }, - { - "id": "33c28dc1.238002", - "type": "function", - "z": "cb95299c.2817c8", - "name": "prepare segmentation", - "func": "global.set('obj_counter', 0);\n\nvar segmentation_list = flow.get('segmentation_list')\nif (segmentation_list !== undefined && segmentation_list !== \"\") {\n msg.payload['path'] = segmentation_list\n}\n\n\nvar force = flow.get('force')\nif (force !== undefined && force !== \"\") {\n msg.payload['settings'] = {\"force\":Boolean(force)}\n}\n\n\nvar recursive = flow.get('recursive')\nif (recursive !== undefined && recursive !== \"\") {\n if (\"settings\" in msg.payload){\n msg.payload.settings[\"recursive\"] = Boolean(recursive)\n }\n else{\n msg.payload['settings'] = {\"recursive\": Boolean(recursive)}\n }\n}\n\nvar ecotaxa = flow.get('ecotaxa')\nif (ecotaxa !== undefined && ecotaxa !== \"\") {\n if (\"settings\" in msg.payload){\n msg.payload.settings[\"ecotaxa\"] = Boolean(ecotaxa)\n }\n else{\n msg.payload['settings'] = {\"ecotaxa\": Boolean(ecotaxa)}\n }\n}\n\nvar keep = flow.get('keep')\nif (keep !== undefined && keep !== \"\") {\n if (\"settings\" in msg.payload){\n msg.payload.settings[\"keep\"] = Boolean(keep)\n }\n else{\n msg.payload['settings'] = {\"keep\": Boolean(keep)}\n }\n}\n\nvar process_id = global.get('process_id')\nif (process_id !== undefined && process_id !== \"\") {\n if (\"settings\" in msg.payload){\n msg.payload.settings[\"process_id\"] = process_id\n }\n else{\n msg.payload['settings'] = {\"process_id\": process_id}\n }\n}\n\nreturn msg;", - 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"x": 270, - "y": 100, - "wires": [["8bd8fb2c.53fa4", "56f845f5.e7c054"]] - }, - { - "id": "cb3b87b5.63c4", - "type": "function", - "z": "cb95299c.2817c8", - "name": "update segmentation_list", - "func": "var segmentation_list = flow.get('segmentation_list');\n\nif (segmentation_list === undefined || segmentation_list === \"\") {\n segmentation_list = []\n console.log(\"error\")\n}\n\npath = \"/home/pi/data/img/\" + msg.payload.title\n\nif (msg.payload.isChecked){\n if (segmentation_list.includes(path) === false){\n segmentation_list.push(path)\n }\n // Element already in list, don't push it more than once\n //segmentation_list.push(msg.payload[\"title\"])\n}\nelse {\n var pos = segmentation_list.indexOf(path)\n segmentation_list.splice(pos, 1)\n}\n\nflow.set('segmentation_list', segmentation_list)", - "outputs": 1, - "noerr": 0, - "initialize": "", - "finalize": "", - "x": 990, - "y": 140, - "wires": [[]] - }, - { - "id": "56f845f5.e7c054", - "type": "change", - "z": "cb95299c.2817c8", - "name": "Reset segmentation_list", - "rules": [ - { - "t": "set", - "p": "segmentation_list", - "pt": "flow", - "to": "[]", - "tot": "json" - } - ], - "action": "", - "property": "", - "from": "", - "to": "", - "reg": false, - "x": 510, - "y": 100, - "wires": [[]] - }, - { - "id": "7fc72364.8f038c", - "type": "ui_template", - "z": "cb95299c.2817c8", - "group": "abeb6dad.635a2", - "name": "Update message", - "order": 1, - "width": 10, - "height": 3, - "format": "
You can choose here in which folder(s) you want the segmentation script to run. A few details though:\n
The segmentation is run recursively in all folders. So if you select a top level folder, the segmentation will be run in all subfolders.\n
Also, you will be able to chose wether for force the segmentation for folders in which it has run already.
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\n Latest object segmented:
\n \"If\n
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\n\n
", - "storeOutMessages": true, - "fwdInMessages": true, - "resendOnRefresh": false, - "templateScope": "local", - "className": "", - "x": 400, - "y": 100, - "wires": [[]] - }, - { - "id": "4f02c726.de69b8", - "type": "ui_button", - "z": "9daf9e2b.019fc", - "name": "", - "group": "a7d64879.38298", - "order": 4, - "width": 6, - "height": 1, - "passthru": false, - "label": "Reboot", - "tooltip": "", - "color": "", - "bgcolor": "#AD1625", - "className": "", - "icon": "fa-repeat fa-2x", - "payload": "reboot", - "payloadType": "str", - "topic": "reboot", - "topicType": "str", - "x": 160, - "y": 240, - "wires": [["4af9112d.87767"]] - }, - { - "id": "611a8b1c.a829b4", - "type": "exec", - "z": "9daf9e2b.019fc", - "command": "sudo", - "addpay": "payload", - "append": "now", - "useSpawn": "false", - "timer": "2", - "winHide": false, - "oldrc": false, - "name": "sudo cmd now", - "x": 480, - "y": 280, - "wires": [[], [], []] - }, - { - "id": "bc76c4d6.a7ad28", - "type": "ui_button", - "z": "9daf9e2b.019fc", - "name": "", - "group": "a7d64879.38298", - "order": 5, - "width": 6, - "height": 1, - "passthru": false, - "label": "Shutdown", - "tooltip": "", - "color": "", - "bgcolor": "#AD1625", - "className": "", - "icon": "fa-power-off fa-2x", - "payload": "shutdown", - "payloadType": "str", - "topic": "shutdown", - "topicType": "str", - "x": 160, - "y": 320, - "wires": [["4af9112d.87767"]] - }, - { - "id": "4af9112d.87767", - "type": "python3-function", - "z": "9daf9e2b.019fc", - "name": "action", - "func": "#!/usr/bin/python3\nimport smbus2 as smbus\n\nbus = smbus.SMBus(1)\n#turn off LED\nbus.write_byte_data(0x0d, 0x07, 0x00)\n#turn off Fan\nbus.write_byte_data(0x0d, 0x08, 0x00)\n\n#msg[\"payload\"] = str(msg[\"topic\"])+' now'\nreturn msg", - "outputs": 1, - "x": 330, - "y": 280, - "wires": [["611a8b1c.a829b4"]] - }, - { - "id": "466eb611.4da048", - "type": "ui_button", - "z": "9daf9e2b.019fc", - "name": "", - "group": "a7d64879.38298", - "order": 2, - "width": 6, - "height": 1, - "passthru": true, - 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\n The PlanktoScope software application consists of three components: a Node-RED dashboard which provides the user interface you're using; a Hardware Controller\n which executes commands sent from the Node-RED dashboard for hardware control and image acquisition; and a Segmenter which processes an acquired dataset of\n images and isolates objects from those images. Each component has its own independent log of messages, managed separately from the logs for the other components.\n

\n

\n All three components have live-updating logs which you can monitor. Additionally, the Hardware Controller and the Segmenter also save all of their log messages\n to files which you can browse and download. Those software components create a new log file each time they start, and the name of the log file includes the time\n in the PlanktoScope's clock when the software component started. However, if your PlanktoScope's clock is usually wrong, it makes the log files difficult to navigate.\n This will be fixed in a future version of the software.\n

\n

\n If you need to share your logs with other people (e.g. on Slack or GitHub), you should open the \"Downloadable Logs\" links, and then you can select one file or multiple\n log files for downloading as a zip archive.\n

\n", - "storeOutMessages": true, - "fwdInMessages": true, - "resendOnRefresh": true, - "templateScope": "local", - "className": "", - "x": 650, - "y": 180, - "wires": [[]] - }, - { - "id": "414353cde6a62346", - "type": "ui_toast", - "z": "9daf9e2b.019fc", - "position": "top right", - "displayTime": "3", - "highlight": "", - "sendall": true, - "outputs": 0, - "ok": "OK", - "cancel": "", - "raw": false, - "className": "", - "topic": "", - "name": "", - "x": 770, - "y": 380, - "wires": [] - }, - { - "id": "e036d07cf78fde85", - "type": "ui_toast", - "z": "9daf9e2b.019fc", - "position": "top right", - "displayTime": "3", - "highlight": "", - "sendall": true, - "outputs": 0, - "ok": "OK", - "cancel": "", - "raw": false, - "className": "", - "topic": "", - "name": "", - "x": 770, - "y": 460, - "wires": [] - }, - { - "id": "ddcbbfa5.cd158", - "type": "exec", - "z": "1371dec5.76e671", - "command": "vcgencmd measure_temp | tr -d \"temp=\" | tr -d \"'C\" | tr -d \"\\n\"", - "addpay": false, - "append": "", - "useSpawn": "", - "timer": "", - "name": "RPi Temp.", - "x": 330, - "y": 40, - "wires": [["bc503fa5.f46dd"], [], []] - }, - { - "id": "3910d662.fa1f7a", - "type": "exec", - "z": "1371dec5.76e671", - "command": "df -h | grep /dev/root | awk -F ' ' '{print $5}' | tr -d % | tr \"\\n$\" \"\\ \" | sed 's/,/./' | tr -d \" \"", - "addpay": false, - "append": "", - "useSpawn": "", - "timer": "", - "name": "Disk Usage", - "x": 330, - "y": 120, - "wires": [["eaf74a43.fa27d"], [], []] - }, - { - "id": "1cd5b4c0.46af9b", - "type": "inject", - "z": "1371dec5.76e671", - "name": "update: 5s", - "props": [ - { - "p": "payload" - }, - { - "p": "topic", - "vt": "str" - } - ], - "repeat": "5", - "crontab": "", - "once": false, - "onceDelay": "", - "topic": "", - "payload": "", - "payloadType": "date", - "x": 110, - "y": 160, - "wires": [ - [ - "3910d662.fa1f7a", - "ddcbbfa5.cd158", - "23a84a3856fb68bd", - "4ed64bd91fa9fbdf", - "ed5f2d963d85478b" - ] - ] - }, - { - "id": "2549f778.4eb828", - "type": "python3-function", - "z": "1371dec5.76e671", - "name": "fan control", - "func": "import smbus2 as smbus\n\nstate = msg[\"payload\"]\nbus = smbus.SMBus(1)\n\nDEVICE_ADDRESS = 0x0d\n# command happens twice, for reasons\nif state == \"off\":\n with smbus.SMBus(1) as bus:\n bus.write_byte_data(DEVICE_ADDRESS, 0x08, 0x00)\n bus.write_byte_data(DEVICE_ADDRESS, 0x08, 0x00)\n return msg\nif state == \"on\":\n with smbus.SMBus(1) as bus:\n bus.write_byte_data(DEVICE_ADDRESS, 0x08, 0x01)\n bus.write_byte_data(DEVICE_ADDRESS, 0x08, 0x01)\n return msg\n", - "outputs": 1, - "x": 1150, - "y": 40, - "wires": [["e640ebb5c397f424"]] - }, - { - "id": "b7ab1ada.1f4158", - "type": "exec", - "z": "1371dec5.76e671", - "command": "i2cdetect -y 1", - "addpay": false, - "append": "", - "useSpawn": "false", - "timer": "1", - "winHide": false, - "oldrc": false, - "name": "i2c update", - "x": 1440, - "y": 40, - "wires": [[], [], []] - }, - { - "id": "bc503fa5.f46dd", - "type": "switch", - "z": "1371dec5.76e671", - "name": "", - "property": "payload", - "propertyType": "msg", - "rules": [ - { - "t": "gt", - "v": "40", - "vt": "num" - }, - { - "t": "lte", - "v": "35", - "vt": "num" - } - ], - "checkall": "true", - "repair": false, - "outputs": 2, - "x": 570, - "y": 40, - "wires": [["a25d6486.e1ce28"], ["5d4f3e71.1bad4"]] - }, - { - "id": "5d4f3e71.1bad4", - "type": "change", - "z": "1371dec5.76e671", - "name": "Set OFF", - "rules": [ - { - "t": "set", - "p": "payload", - "pt": "msg", - "to": "off", - "tot": "str" - } - ], - "action": "", - "property": "", - "from": "", - "to": "", - "reg": false, - "x": 720, - "y": 60, - "wires": [["7fb13a4a53b612a0"]] - }, - { - "id": "a25d6486.e1ce28", - "type": "change", - "z": "1371dec5.76e671", - "name": "Set ON", - "rules": [ - { - "t": "set", - "p": "payload", - "pt": "msg", - "to": "on", - "tot": "str" - } - ], - "action": "", - "property": "", - "from": "", - "to": "", - "reg": false, - "x": 720, - "y": 20, - "wires": [["7fb13a4a53b612a0"]] - }, - { - "id": "569154a.b53182c", - "type": "inject", - "z": "1371dec5.76e671", - "name": "once", - "props": [ - { - "p": "payload" - } - ], - "repeat": "", - "crontab": "", - "once": true, - "onceDelay": "", - "topic": "", - "payload": "start", - "payloadType": "str", - "x": 170, - "y": 680, - "wires": [["ccb5172d10c1ccaf"]] - }, - { - "id": "4828d2f4.7c712c", - "type": "function", - "z": "1371dec5.76e671", - "name": "set global", - "func": "global.set(\"acq_instrument_id\",msg.payload);\n", - "outputs": 1, - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 580, - "y": 700, - "wires": [[]] - }, - { - "id": "e2f39a35.f57298", - "type": "subflow:1c24ad9c.bebec2", - "z": "1371dec5.76e671", - "name": "", - "env": [], - "x": 170, - "y": 620, - "wires": [["950b773ad4c0fdfe"]] - }, - { - "id": "3e64877a.9684b", - "type": "function", - "z": "1371dec5.76e671", - "name": "set global", - "func": "global.set(\"acq_software\", \"PlanktoScope \" + msg.payload);\n", - "outputs": 1, - "timeout": "", - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 820, - "y": 500, - "wires": [[]] - }, - { - "id": "bdc6718a.dd5d48", - "type": "ui_text", - "z": "1371dec5.76e671", - "group": "ce9e278.781eed8", - "order": 2, - "width": 0, - "height": 0, - "name": "", - "label": "Instrument Type", - "format": "{{msg.payload}}", - "layout": "row-spread", - "className": "", - "style": false, - "font": "", - "fontSize": "", - "color": "#000000", - "x": 600, - "y": 620, - "wires": [] - }, - { - "id": "a400a97e.e333a8", - "type": "ui_text", - "z": "1371dec5.76e671", - "group": "ce9e278.781eed8", - "order": 1, - "width": 0, - "height": 0, - "name": "", - "label": "Instrument Name", - "format": "{{msg.payload}}", - "layout": "row-spread", - "className": "", - "style": false, - "font": "", - "fontSize": "", - "color": "#000000", - "x": 610, - "y": 660, - "wires": [] - }, - { - "id": "8343fa69.49339", - "type": "ui_text", - "z": "1371dec5.76e671", - "group": "ce9e278.781eed8", - "order": 3, - "width": 0, - "height": 0, - "name": "", - "label": "Software Version", - "format": "{{msg.payload}}", - "layout": "row-spread", - "className": "", - "style": false, - "font": "", - "fontSize": "", - "color": "#000000", - "x": 850, - "y": 540, - "wires": [] - }, - { - "id": "f783aefd.c3bfd8", - "type": "ui_text", - "z": "1371dec5.76e671", - "group": "ce9e278.781eed8", - "order": 4, - "width": 0, - "height": 0, - "name": "", - "label": "Camera Name", - "format": "{{msg.payload}}", - "layout": "row-spread", - "x": 600, - "y": 740, - "wires": [] - }, - { - "id": "30067f35.532f2", - "type": "link in", - "z": "1371dec5.76e671", - "name": "Camera Name", - "links": ["559a8085.1d6b9"], - "x": 205, - "y": 740, - "wires": [["f783aefd.c3bfd8"]] - }, - { - "id": "11b51f8f.acd308", - "type": "python3-function", - "z": "1371dec5.76e671", - "d": true, - "name": "fan temperature", - "func": "import smbus\nbus = smbus.SMBus(1)\n\naddr = 0x0d\nfan_reg = 0x08\n\ntemp = float( msg[\"payload\"])\n\n# 0x01 full speed, 0x02: 20% speed, ..., 0x09: 90% speed\n\nif temp < 38:\n bus.write_byte_data(addr, fan_reg, 0x00)\nelif temp < 43:\n bus.write_byte_data(addr, fan_reg, 0x02)\nelif temp < 46:\n bus.write_byte_data(addr, fan_reg, 0x04)\nelif temp < 48:\n bus.write_byte_data(addr, fan_reg, 0x06)\nelif temp < 52:\n bus.write_byte_data(addr, fan_reg, 0x08)\nelse:\n bus.write_byte_data(addr, fan_reg, 0x01)\n\nreturn msg", - "outputs": 1, - "x": 1440, - "y": 120, - "wires": [[]] - }, - { - "id": "eaf74a43.fa27d", - "type": "switch", - "z": "1371dec5.76e671", - "name": "if disk > 90%", - "property": "payload", - "propertyType": "msg", - "rules": [ - { - "t": "gte", - "v": "90", - "vt": "num" - } - ], - "checkall": "true", - "repair": false, - "outputs": 1, - "x": 590, - "y": 120, - "wires": [["6d09f428.930bcc"]] - }, - { - "id": "46d5e78b.15f998", - "type": "ui_toast", - "z": "1371dec5.76e671", - "position": "dialog", - "displayTime": "10", - "highlight": "", - "sendall": true, - "outputs": 1, - "ok": "OK", - "cancel": "", - "raw": false, - "className": "", - "topic": "", - "name": "", - "x": 1090, - "y": 120, - "wires": [[]] - }, - { - "id": "24df077a.cb252", - "type": "change", - "z": "1371dec5.76e671", - "name": "full disk msg", - "rules": [ - { - "t": "set", - "p": "payload", - "pt": "msg", - "to": "\"Your drive has reached 90% capacity, you should do a backup to an external drive and a purge.\"", - "tot": "str" - } - ], - "action": "", - "property": "", - "from": "", - "to": "", - "reg": false, - "x": 930, - "y": 120, - "wires": [["46d5e78b.15f998"]] - }, - { - "id": "6d09f428.930bcc", - "type": "delay", - "z": "1371dec5.76e671", - "name": "", - "pauseType": "rate", - "timeout": "5", - "timeoutUnits": "seconds", - "rate": "1", - "nbRateUnits": "5", - "rateUnits": "minute", - "randomFirst": "1", - "randomLast": "5", - "randomUnits": "seconds", - "drop": true, - "allowrate": false, - "outputs": 1, - "x": 760, - "y": 120, - "wires": [["24df077a.cb252"]] - }, - { - "id": "e640ebb5c397f424", - "type": "delay", - "z": "1371dec5.76e671", - "name": "", - "pauseType": "delay", - "timeout": "1", - "timeoutUnits": "seconds", - "rate": "1", - "nbRateUnits": "1", - "rateUnits": "second", - "randomFirst": "1", - "randomLast": "5", - "randomUnits": "seconds", - "drop": false, - "allowrate": false, - "outputs": 1, - "x": 1300, - "y": 40, - "wires": [["b7ab1ada.1f4158"]] - }, - { - "id": "7fb13a4a53b612a0", - "type": "rbe", - "z": "1371dec5.76e671", - "name": "", - "func": "rbe", - "gap": "", - "start": "", - "inout": "out", - "septopics": true, - "property": "payload", - "topi": "topic", - "x": 1010, - "y": 40, - "wires": [["2549f778.4eb828"]] - }, - { - "id": "ccb5172d10c1ccaf", - "type": "file in", - "z": "1371dec5.76e671", - "name": "Get machine name", - "filename": "/run/machine-name", - "filenameType": "str", - "format": "utf8", - "chunk": false, - "sendError": false, - "encoding": "none", - "allProps": false, - "x": 350, - "y": 680, - "wires": [["a400a97e.e333a8", "4828d2f4.7c712c"]] - }, - { - "id": "950b773ad4c0fdfe", - "type": "change", - "z": "1371dec5.76e671", - "name": "Get acq_instrument", - "rules": [ - { - "t": "set", - "p": "payload", - "pt": "msg", - "to": "payload.acq_instrument", - "tot": "msg" - }, - { - "t": "set", - "p": "topic", - "pt": "msg", - "to": "acq_instrument", - "tot": "str" - } - ], - "action": "", - "property": "", - "from": "", - "to": "", - "reg": false, - "x": 350, - "y": 620, - "wires": [["bdc6718a.dd5d48"]] - }, - { - "id": "24de7407445d2087", - "type": "inject", - "z": "1371dec5.76e671", - "name": "once", - "props": [ - { - "p": "payload" - } - ], - "repeat": "", - "crontab": "", - "once": true, - "onceDelay": "", - "topic": "", - "payload": "start", - "payloadType": "str", - "x": 90, - "y": 520, - "wires": [["e4f9ed2b337c2fa6"]] - }, - { - "id": "e4f9ed2b337c2fa6", - "type": "file in", - "z": "1371dec5.76e671", - "name": "Versioning File", - "filename": "/usr/share/planktoscope/installer-versioning.yml", - "filenameType": "str", - "format": "utf8", - "chunk": false, - "sendError": false, - "encoding": "none", - "allProps": false, - "x": 240, - "y": 520, - "wires": [["db79aae8a7fe3512"]] - }, - { - "id": "db79aae8a7fe3512", - "type": "yaml", - "z": "1371dec5.76e671", - "property": "payload", - "name": "", - "x": 390, - "y": 520, - "wires": [["04c313e8d9aac122", "ef1970121e57c5e8", "574361abfe75b3b3"]] - }, - { - "id": "04c313e8d9aac122", - "type": "change", - "z": "1371dec5.76e671", - "name": "Get repo", - "rules": [ - { - "t": "set", - "p": "payload", - "pt": "msg", - "to": "payload.repo", - "tot": "msg" - } - ], - "action": "", - "property": "", - "from": "", - "to": "", - "reg": false, - "x": 580, - "y": 480, - "wires": [["57b3b083a2455e09"]] - }, - { - "id": "ef1970121e57c5e8", - "type": "change", - "z": "1371dec5.76e671", - "name": "Get version", - "rules": [ - { - "t": "set", - "p": "payload", - "pt": "msg", - "to": "payload.version", - "tot": "msg" - } - ], - "action": "", - "property": "", - "from": "", - "to": "", - "reg": false, - "x": 590, - "y": 520, - "wires": [["3e64877a.9684b", "8343fa69.49339"]] - }, - { - "id": "57b3b083a2455e09", - "type": "function", - "z": "1371dec5.76e671", - "name": "set global", - "func": "global.set(\"process_source\", msg.payload);\n", - "outputs": 1, - "timeout": "", - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 820, - "y": 460, - "wires": [[]] - }, - { - "id": "574361abfe75b3b3", - "type": "change", - "z": "1371dec5.76e671", - "name": "Get commit", - "rules": [ - { - "t": "set", - "p": "payload", - "pt": "msg", - "to": "payload.commit", - "tot": "msg" - } - ], - "action": "", - "property": "", - "from": "", - "to": "", - "reg": false, - "x": 590, - "y": 560, - "wires": [["016d1d2a2f19f1a6"]] - }, - { - "id": "016d1d2a2f19f1a6", - "type": "function", - "z": "1371dec5.76e671", - "name": "set global", - "func": "global.set(\"process_commit\", msg.payload);\n", - "outputs": 1, - "timeout": "", - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 820, - "y": 580, - "wires": [[]] - }, - { - "id": "4ed64bd91fa9fbdf", - "type": "ui_template", - "z": "1371dec5.76e671", - "group": "3da7da8f.179606", - "name": "Metrics panel", - "order": 1, - "width": "0", - "height": "0", - "format": "
\n

\n The instrument's system time is different from your web browser's time by {{drift}}.\n As a result, timestamps in your datasets will be incorrect.\n Additionally, system metrics will not be recorded or shown correctly.\n Additionally, you will see incorrectly-aligned graphs in the metrics below.\n

\n

Please change the instrument's system time or your web browser's time to accurate values.

\n

\n \n

\n
\n\n
\n

Loading system metrics, please wait...

\n
\n\n
\n \n
\n\n\n", - "storeOutMessages": true, - "fwdInMessages": true, - "resendOnRefresh": false, - "templateScope": "local", - "className": "", - "x": 330, - "y": 280, - "wires": [[]] - }, - { - "id": "38bad1e220cd5d87", - "type": "ui_text", - "z": "1371dec5.76e671", - "group": "ce9e278.781eed8", - "order": 5, - "width": 0, - "height": 0, - "name": "", - "label": "System Time", - "format": "{{msg.payload}}", - "layout": "row-spread", - "className": "", - "style": false, - "font": "", - "fontSize": 16, - "color": "#000000", - "x": 590, - "y": 240, - "wires": [] - }, - { - "id": "ed5f2d963d85478b", - "type": "function", - "z": "1371dec5.76e671", - "name": "Get system time", - "func": "var date = new Date();\ndate.setSeconds(0, 0);\nmsg.payload = (\n date.toISOString().replace('T', ' ').replace(/:\\d+\\.\\d+Z/,' UTC')\n);\nreturn msg", - "outputs": 1, - "timeout": 0, - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 340, - "y": 240, - "wires": [["38bad1e220cd5d87"]] - }, - { - "id": "23a84a3856fb68bd", - "type": "ui_template", - "z": "1371dec5.76e671", - "group": "ce9e278.781eed8", - "name": "Browser time", - "order": 6, - "width": "6", - "height": "1", - "format": "
\n

Browser Time

\n

{{time}}

\n
\n\n", - "storeOutMessages": true, - "fwdInMessages": true, - "resendOnRefresh": false, - "templateScope": "local", - "className": "", - "x": 330, - "y": 200, - "wires": [[]] - }, - { - "id": "19a45f972be2b0f1", - "type": "function", - "z": "1371dec5.76e671", - "name": "Get system time", - "func": "var date = new Date(msg.payload.timestamp);\nmsg.payload = (\n date.toISOString().replace('T', ' ').replace(/:\\d+\\.\\d+Z/,' UTC')\n);\nreturn msg", - "outputs": 1, - "timeout": 0, - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 340, - "y": 340, - "wires": [["ee2c5e7c29eb4760"]] - }, - { - "id": "8ba3e2774987fd58", - "type": "http in", - "z": "1371dec5.76e671", - "name": "POST /api/system-time", - "url": "/api/system-time", - "method": "post", - "upload": false, - "swaggerDoc": "", - "x": 120, - "y": 360, - "wires": [["19a45f972be2b0f1", "07bbdca8d6153210", "595df18543c8328e"]] - }, - { - "id": "ee2c5e7c29eb4760", - "type": "ui_toast", - "z": "1371dec5.76e671", - "position": "top right", - "displayTime": "3", - "highlight": "", - "sendall": true, - "outputs": 0, - "ok": "OK", - "cancel": "", - "raw": false, - "className": "", - "topic": "Setting system time", - "name": "", - "x": 610, - "y": 340, - "wires": [] - }, - { - "id": "07bbdca8d6153210", - "type": "function", - "z": "1371dec5.76e671", - "name": "Prepare timestamp", - "func": "msg.payload = ('@' + msg.payload.timestamp).slice(0, -3);\nreturn msg;", - "outputs": 1, - "timeout": 0, - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 350, - "y": 380, - "wires": [["7558e8f302d5b944"]] - }, - { - "id": "7558e8f302d5b944", - "type": "exec", - "z": "1371dec5.76e671", - "command": "sudo date -s", - "addpay": "payload", - "append": "", - "useSpawn": "", - "timer": "", - "winHide": false, - "name": "Set system time", - "x": 600, - "y": 380, - "wires": [[], [], []] - }, - { - "id": "c8be8dad272e1fa5", - "type": "http in", - "z": "1371dec5.76e671", - "name": "GET /api/system-time", - "url": "/api/system-time", - "method": "get", - "upload": false, - "swaggerDoc": "", - "x": 120, - "y": 420, - "wires": [["0f4ce59587fa14e1"]] - }, - { - "id": "0f4ce59587fa14e1", - "type": "function", - "z": "1371dec5.76e671", - "name": "Get system time", - "func": "var date = new Date();\nmsg.payload = {'timestamp': date.getTime()};\nreturn msg", - "outputs": 1, - "timeout": 0, - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 340, - "y": 420, - "wires": [["433d48a4b1bc0b27"]] - }, - { - "id": "433d48a4b1bc0b27", - "type": "http response", - "z": "1371dec5.76e671", - "name": "Send GET response", - "statusCode": "", - "headers": { - "Content-Type": "application/json; charset=UTF-8" - }, - "x": 620, - "y": 420, - "wires": [] - }, - { - "id": "595df18543c8328e", - "type": "http response", - "z": "1371dec5.76e671", - "name": "Send POST response", - "statusCode": "", - "headers": {}, - "x": 620, - "y": 300, - "wires": [] - }, - { - "id": "1fdf77b5.24e4e", - "type": "mqtt in", - "z": "9a22e67a.378818", - "name": "", - "topic": "status/#", - "qos": "0", - "datatype": "json", - "broker": "8dc3722c.06efa8", - "inputs": 0, - "x": 290, - "y": 340, - "wires": [["fa73983d.318188"]] - }, - { - "id": "4a1e9e3e.27506", - "type": "switch", - "z": "9a22e67a.378818", - "name": "Filter segmenter out", - "property": "topic", - "propertyType": "msg", - "rules": [ - { - "t": "else" - }, - { - "t": "cont", - "v": "status/segmenter", - "vt": "str" - } - ], - "checkall": "true", - "repair": false, - "outputs": 2, - "x": 620, - "y": 340, - "wires": [["58f2e0f.4e8b12"], ["dcf5bd45.16a8d"]] - }, - { - "id": "fa73983d.318188", - "type": "json", - "z": "9a22e67a.378818", - "name": "", - "property": "payload", - "action": "obj", - "pretty": true, - "x": 430, - "y": 340, - "wires": [["4a1e9e3e.27506"]] - }, - { - "id": "58f2e0f.4e8b12", - "type": "link out", - "z": "9a22e67a.378818", - "name": "Fluidic module status", - "links": ["bb628f8d.98f108"], - "x": 795, - "y": 320, - "wires": [] - }, - { - "id": "dcf5bd45.16a8d", - "type": "link out", - "z": "9a22e67a.378818", - "name": "Segmenter module status", - "links": ["25867454.a8e334"], - "x": 795, - "y": 360, - "wires": [] - }, - { - "id": "e41870d7.300eb8", - "type": "link out", - "z": "1eaf21c8.f7a21e", - "name": "Stepper config change", - "links": ["45a7b5aa.2ed20c"], - "x": 1475, - "y": 380, - "wires": [] - }, - { - "id": "2068e7f.f4efb18", - "type": "delay", - "z": "1eaf21c8.f7a21e", - "name": "", - "pauseType": "delay", - "timeout": "1", - "timeoutUnits": "seconds", - "rate": "1", - "nbRateUnits": "1", - "rateUnits": "second", - "randomFirst": "1", - "randomLast": "5", - "randomUnits": "seconds", - "drop": false, - "outputs": 1, - "x": 1160, - "y": 380, - "wires": [["e41870d7.300eb8"]] - }, - { - "id": "8e3b3d3c.955148", - "type": "subflow:4ed26b8b.253504", - "z": "1eaf21c8.f7a21e", - "name": "", - "env": [], - "x": 1200, - "y": 420, - "wires": [] - }, - { - "id": "c534fd26.13741", - "type": "change", - "z": "1eaf21c8.f7a21e", - "name": "Get stepper_reverse", - "rules": [ - { - "t": "set", - "p": "payload", - "pt": "msg", - "to": "payload.stepper_reverse", - "tot": "msg" - } - ], - "action": "", - "property": "", - "from": "", - "to": "", - "reg": false, - "x": 640, - "y": 440, - "wires": [["cd1987c7.027f58"]] - }, - { - "id": "cd1987c7.027f58", - "type": "ui_switch", - "z": "1eaf21c8.f7a21e", - "name": "stepper_reverse", - "label": "Invert stepper output", - "tooltip": "Stepper 1 is controlled by output 1 or the other way around", - "group": "6be36295.0ab324", - "order": 5, - "width": 0, - "height": 0, - "passthru": false, - "decouple": "false", - "topic": "stepper_reverse", - "style": "", - "onvalue": "true", - "onvalueType": "bool", - "onicon": "", - "oncolor": "", - "offvalue": "false", - "offvalueType": "bool", - "officon": "", - "offcolor": "", - "x": 940, - "y": 440, - "wires": [["8e3b3d3c.955148", "2068e7f.f4efb18"]] - }, - { - "id": "54ba7f16.709ad8", - "type": "change", - "z": "1eaf21c8.f7a21e", - "name": "Get pump_steps_per_ml", - "rules": [ - { - "t": "set", - "p": "payload", - "pt": "msg", - "to": "payload.pump_steps_per_ml", - "tot": "msg" - } - ], - "action": "", - "property": "", - "from": "", - "to": "", - "reg": false, - "x": 650, - "y": 400, - "wires": [["ee58b91c.396108"]] - }, - { - "id": "ee58b91c.396108", - "type": "ui_text_input", - "z": "1eaf21c8.f7a21e", - "name": "pump_steps_per_ml", - "label": "Pump: steps per mL", - "tooltip": "", - "group": "6be36295.0ab324", - "order": 6, - "width": 0, - "height": 0, - "passthru": false, - "mode": "number", - "delay": "2000", - "topic": "pump_steps_per_ml", - "topicType": "str", - "x": 920, - "y": 400, - "wires": [["2068e7f.f4efb18", "8e3b3d3c.955148"]] - }, - { - "id": "7534dfd9.8cf3e8", - "type": "ui_template", - "z": "1eaf21c8.f7a21e", - "group": "6be36295.0ab324", - "name": "Information", - "order": 1, - "width": "8", - "height": 3, - "format": "
\n

\n Changing one of these values will cause the Python hardware controller to restart, to reload the new hardware configuration.\n

\n

\n Warning: selecting a hardware version from the dropdown menu below will also overwrite all of your hardware settings, including your camera white balance settings.\n

\n

\n If you are not sure, you probably should not be touching anything here!\n

\n
", - "storeOutMessages": true, - "fwdInMessages": true, - "resendOnRefresh": true, - "templateScope": "local", - "className": "", - "x": 590, - "y": 60, - "wires": [[]] - }, - { - "id": "a7e5c7f4.644678", - "type": "ui_dropdown", - "z": "1eaf21c8.f7a21e", - "name": "", - "label": "Hardware version", - "tooltip": "", - "place": "Select option", - "group": "6be36295.0ab324", - "order": 2, - "width": 0, - "height": 0, - "passthru": false, - "multiple": false, - "options": [ - { - "label": "", - "value": "PlanktoScope v2.1", - "type": "str" - }, - { - "label": "", - "value": "PlanktoScope v2.3", - "type": "str" - }, - { - "label": "", - "value": "PlanktoScope v2.5", - "type": "str" - }, - { - "label": "", - "value": "PlanktoScope v2.6", - "type": "str" - } - ], - "payload": "", - "topic": "acq_instrument", - "topicType": "str", - "className": "", - "x": 580, - "y": 160, - "wires": [["3e2c5c1c.4c57b4", "932a1ef8c2e81979", "025ad3cdaa557843"]] - }, - { - "id": "1cfadc66.3cde8c", - "type": "subflow:1c24ad9c.bebec2", - "z": "1eaf21c8.f7a21e", - "name": "", - "env": [], - "x": 970, - "y": 160, - "wires": [[]] - }, - { - "id": "3e2c5c1c.4c57b4", - "type": "function", - "z": "1eaf21c8.f7a21e", - "name": "Save global", - "func": "global.set(msg.topic,msg.payload);\nreturn msg;", - "outputs": 1, - "timeout": "", - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 810, - "y": 160, - "wires": [["1cfadc66.3cde8c"]] - }, - { - "id": "427c312.fc5e65", - "type": "subflow:1c24ad9c.bebec2", - "z": "1eaf21c8.f7a21e", - "name": "", - "env": [], - "x": 130, - "y": 160, - "wires": [["2716aa5b3d027f95"]] - }, - { - "id": "c67c305004f87e39", - "type": "change", - "z": "1eaf21c8.f7a21e", - "name": "Get process_pixel_fixed", - "rules": [ - { - "t": "set", - "p": "payload", - "pt": "msg", - "to": "payload.process_pixel_fixed", - "tot": "msg" - } - ], - "action": "", - "property": "", - "from": "", - "to": "", - "reg": false, - "x": 650, - "y": 480, - "wires": [["244ca5dd62df2bcd"]] - }, - { - "id": "244ca5dd62df2bcd", - "type": "ui_text_input", - "z": "1eaf21c8.f7a21e", - "name": "process_pixel_fixed", - "label": "Pixel size calibration: um per pixel", - "tooltip": "Object size in µm / pixel. 0 will remove this calibration.", - "group": "6be36295.0ab324", - "order": 8, - "width": 0, - "height": 0, - "passthru": true, - "mode": "number", - "delay": "1000", - "topic": "process_pixel_fixed", - "sendOnBlur": true, - "className": "", - "topicType": "str", - "x": 930, - "y": 480, - "wires": [["8e3b3d3c.955148", "f9b47f4b1da15778"]] - }, - { - "id": "f9b47f4b1da15778", - "type": "function", - "z": "1eaf21c8.f7a21e", - "name": "Set or remove if null", - "func": "if (msg.payload == 0){\n global.set(msg.topic,undefined)\n}\nelse {\n global.set(msg.topic,msg.payload);\n}\n\nreturn msg", - "outputs": 1, - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 1200, - "y": 480, - "wires": [["5d5ad36d2c50dcc2"]] - }, - { - "id": "5d5ad36d2c50dcc2", - "type": "link out", - "z": "1eaf21c8.f7a21e", - "name": "Process_pixel calibration", - "links": [], - "x": 1475, - "y": 500, - "wires": [] - }, - { - "id": "6146ba22df928516", - "type": "ui_dropdown", - "z": "1eaf21c8.f7a21e", - "name": "acq_fnumber_objective", - "label": "M12 Lens", - "tooltip": "", - "place": "Select option", - "group": "6be36295.0ab324", - "order": 7, - "width": 0, - "height": 0, - "passthru": true, - "multiple": false, - "options": [ - { - "label": "f 25mm 1/2\" 5MP IR", - "value": 25, - "type": "num" - }, - { - "label": "f 16mm 1/2.5\" 5MP IR", - "value": 16, - "type": "num" - }, - { - "label": "f 12mm 1/2.5\" 5MP IR", - "value": 12, - "type": "num" - }, - { - "label": "f 8mm 1/2.5\" 5MP IR", - "value": 8, - "type": "num" - }, - { - "label": "f 6mm 1/2.5\" 5MP IR", - "value": 6, - "type": "num" - } - ], - "payload": "", - "topic": "acq_fnumber_objective", - "topicType": "str", - "x": 910, - "y": 520, - "wires": [["a6983d3232b570a7", "8e3b3d3c.955148"]] - }, - { - "id": "a6983d3232b570a7", - "type": "change", - "z": "1eaf21c8.f7a21e", - "name": "", - "rules": [ - { - "t": "set", - "p": "acq_fnumber_objective", - "pt": "global", - "to": "payload", - "tot": "msg" - } - ], - "action": "", - "property": "", - "from": "", - "to": "", - "reg": false, - "x": 1240, - "y": 520, - "wires": [["5d5ad36d2c50dcc2"]] - }, - { - "id": "11955bbeefc29ab4", - "type": "change", - "z": "1eaf21c8.f7a21e", - "name": "Get acq_fnumber_objective", - "rules": [ - { - "t": "set", - "p": "payload", - "pt": "msg", - "to": "payload.acq_fnumber_objective", - "tot": "msg" - }, - { - "t": "set", - "p": "topic", - "pt": "msg", - "to": "acq_fnumber_objective", - "tot": "str" - } - ], - "action": "", - "property": "", - "from": "", - "to": "", - "reg": false, - "x": 660, - "y": 520, - "wires": [["6146ba22df928516"]] - }, - { - "id": "da3d4a90384d62a8", - "type": "subflow:e6665421f66ea4c8", - "z": "1eaf21c8.f7a21e", - "name": "", - "x": 360, - "y": 440, - "wires": [ - [ - "c534fd26.13741", - "54ba7f16.709ad8", - "c67c305004f87e39", - "11955bbeefc29ab4" - ] - ] - }, - { - "id": "f83560053c609914", - "type": "inject", - "z": "1eaf21c8.f7a21e", - "name": "Once", - "props": [], - "repeat": "", - "crontab": "", - "once": true, - "onceDelay": 0.1, - "topic": "", - "x": 130, - "y": 440, - "wires": [["da3d4a90384d62a8"]] - }, - { - "id": "e4ead350b3d07578", - "type": "link out", - "z": "1eaf21c8.f7a21e", - "name": "Reload hardware config", - "mode": "link", - "links": ["04920f50bbbf6a2a", "45a7b5aa.2ed20c"], - "x": 875, - "y": 240, - "wires": [] - }, - { - "id": "025ad3cdaa557843", - "type": "ui_toast", - "z": "1eaf21c8.f7a21e", - "position": "top right", - "displayTime": "3", - "highlight": "", - "sendall": true, - "outputs": 0, - "ok": "OK", - "cancel": "", - "raw": false, - "className": "", - "topic": "Resetting hardware configuration to version-specific default", - "name": "", - "x": 830, - "y": 120, - "wires": [] - }, - { - "id": "932a1ef8c2e81979", - "type": "change", - "z": "1eaf21c8.f7a21e", - "name": "Choose default hardware config", - "rules": [ - { - "t": "set", - "p": "payload", - "pt": "msg", - "to": "$join([\"/home/pi/PlanktoScope/device-backend/default-configs/\", $substringAfter(msg.payload, \"PlanktoScope \"), \".hardware.json\"])", - "tot": "jsonata" - } - ], - "action": "", - "property": "", - "from": "", - "to": "", - "reg": false, - "x": 210, - "y": 240, - "wires": [["833dac7cbd693c53"]] - }, - { - "id": "833dac7cbd693c53", - "type": "exec", - "z": "1eaf21c8.f7a21e", - "command": "cp", - "addpay": "payload", - "append": "/home/pi/PlanktoScope/hardware.json", - "useSpawn": "false", - "timer": "", - "winHide": false, - "oldrc": false, - "name": "Copy default hardware config", - "x": 500, - "y": 240, - "wires": [["0b67ccf37c034e90"], [], []] - }, - { - "id": "0b67ccf37c034e90", - "type": "delay", - "z": "1eaf21c8.f7a21e", - "name": "", - "pauseType": "delay", - "timeout": "500", - "timeoutUnits": "milliseconds", - "rate": "1", - "nbRateUnits": "1", - "rateUnits": "second", - "randomFirst": "1", - "randomLast": "5", - "randomUnits": "seconds", - "drop": false, - "allowrate": false, - "outputs": 1, - "x": 730, - "y": 240, - "wires": [["da3d4a90384d62a8", "e4ead350b3d07578"]] - }, - { - "id": "2716aa5b3d027f95", - "type": "change", - "z": "1eaf21c8.f7a21e", - "name": "Get acq_instrument", - "rules": [ - { - "t": "set", - "p": "payload", - "pt": "msg", - "to": "payload.acq_instrument", - "tot": "msg" - }, - { - "t": "set", - "p": "topic", - "pt": "msg", - "to": "acq_instrument", - "tot": "str" - } - ], - "action": "", - "property": "", - "from": "", - "to": "", - "reg": false, - "x": 330, - "y": 160, - "wires": [["a7e5c7f4.644678"]] - } + "reg": false, + "x": 650, + "y": 400, + "wires": [ + [ + "ee58b91c.396108" + ] + ] + }, + { + "id": "ee58b91c.396108", + "type": "ui_text_input", + "z": "1eaf21c8.f7a21e", + "name": "pump_steps_per_ml", + "label": "Pump: steps per mL", + "tooltip": "", + "group": "6be36295.0ab324", + "order": 6, + "width": 0, + "height": 0, + "passthru": false, + "mode": "number", + "delay": "2000", + "topic": "pump_steps_per_ml", + "topicType": "str", + "x": 920, + "y": 400, + "wires": [ + [ + "2068e7f.f4efb18", + "8e3b3d3c.955148" + ] + ] + }, + { + "id": "7534dfd9.8cf3e8", + "type": "ui_template", + "z": "1eaf21c8.f7a21e", + "group": "6be36295.0ab324", + "name": "Information", + "order": 1, + "width": "8", + "height": 3, + "format": "
\n

\n Changing one of these values will cause the Python hardware controller to restart, to reload the new hardware configuration.\n

\n

\n Warning: selecting a hardware version from the dropdown menu below will also overwrite all of your hardware settings, including your camera white balance settings.\n

\n

\n If you are not sure, you probably should not be touching anything here!\n

\n
", + "storeOutMessages": true, + "fwdInMessages": true, + "resendOnRefresh": true, + "templateScope": "local", + "className": "", + "x": 590, + "y": 60, + "wires": [ + [] + ] + }, + { + "id": "a7e5c7f4.644678", + "type": "ui_dropdown", + "z": "1eaf21c8.f7a21e", + "name": "", + "label": "Hardware version", + "tooltip": "", + "place": "Select option", + "group": "6be36295.0ab324", + "order": 2, + "width": 0, + "height": 0, + "passthru": false, + "multiple": false, + "options": [ + { + "label": "", + "value": "PlanktoScope v2.1", + "type": "str" + }, + { + "label": "", + "value": "PlanktoScope v2.3", + "type": "str" + }, + { + "label": "", + "value": "PlanktoScope v2.5", + "type": "str" + }, + { + "label": "", + "value": "PlanktoScope v2.6", + "type": "str" + } + ], + "payload": "", + "topic": "acq_instrument", + "topicType": "str", + "className": "", + "x": 580, + "y": 160, + "wires": [ + [ + "3e2c5c1c.4c57b4", + "932a1ef8c2e81979", + "025ad3cdaa557843" + ] + ] + }, + { + "id": "1cfadc66.3cde8c", + "type": "subflow:1c24ad9c.bebec2", + "z": "1eaf21c8.f7a21e", + "name": "", + "env": [], + "x": 970, + "y": 160, + "wires": [ + [] + ] + }, + { + "id": "3e2c5c1c.4c57b4", + "type": "function", + "z": "1eaf21c8.f7a21e", + "name": "Save global", + "func": "global.set(msg.topic,msg.payload);\nreturn msg;", + "outputs": 1, + "timeout": "", + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 810, + "y": 160, + "wires": [ + [ + "1cfadc66.3cde8c" + ] + ] + }, + { + "id": "427c312.fc5e65", + "type": "subflow:1c24ad9c.bebec2", + "z": "1eaf21c8.f7a21e", + "name": "", + "env": [], + "x": 130, + "y": 160, + "wires": [ + [ + "2716aa5b3d027f95" + ] + ] + }, + { + "id": "c67c305004f87e39", + "type": "change", + "z": "1eaf21c8.f7a21e", + "name": "Get process_pixel_fixed", + "rules": [ + { + "t": "set", + "p": "payload", + "pt": "msg", + "to": "payload.process_pixel_fixed", + "tot": "msg" + } + ], + "action": "", + "property": "", + "from": "", + "to": "", + "reg": false, + "x": 650, + "y": 480, + "wires": [ + [ + "244ca5dd62df2bcd" + ] + ] + }, + { + "id": "244ca5dd62df2bcd", + "type": "ui_text_input", + "z": "1eaf21c8.f7a21e", + "name": "process_pixel_fixed", + "label": "Pixel size calibration: um per pixel", + "tooltip": "Object size in µm / pixel. 0 will remove this calibration.", + "group": "6be36295.0ab324", + "order": 8, + "width": 0, + "height": 0, + "passthru": true, + "mode": "number", + "delay": "1000", + "topic": "process_pixel_fixed", + "sendOnBlur": true, + "className": "", + "topicType": "str", + "x": 930, + "y": 480, + "wires": [ + [ + "8e3b3d3c.955148", + "f9b47f4b1da15778" + ] + ] + }, + { + "id": "f9b47f4b1da15778", + "type": "function", + "z": "1eaf21c8.f7a21e", + "name": "Set or remove if null", + "func": "if (msg.payload == 0){\n global.set(msg.topic,undefined)\n}\nelse {\n global.set(msg.topic,msg.payload);\n}\n\nreturn msg", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 1200, + "y": 480, + "wires": [ + [ + "5d5ad36d2c50dcc2" + ] + ] + }, + { + "id": "5d5ad36d2c50dcc2", + "type": "link out", + "z": "1eaf21c8.f7a21e", + "name": "Process_pixel calibration", + "links": [], + "x": 1475, + "y": 500, + "wires": [] + }, + { + "id": "6146ba22df928516", + "type": "ui_dropdown", + "z": "1eaf21c8.f7a21e", + "name": "acq_fnumber_objective", + "label": "M12 Lens", + "tooltip": "", + "place": "Select option", + "group": "6be36295.0ab324", + "order": 7, + "width": 0, + "height": 0, + "passthru": true, + "multiple": false, + "options": [ + { + "label": "f 25mm 1/2\" 5MP IR", + "value": 25, + "type": "num" + }, + { + "label": "f 16mm 1/2.5\" 5MP IR", + "value": 16, + "type": "num" + }, + { + "label": "f 12mm 1/2.5\" 5MP IR", + "value": 12, + "type": "num" + }, + { + "label": "f 8mm 1/2.5\" 5MP IR", + "value": 8, + "type": "num" + }, + { + "label": "f 6mm 1/2.5\" 5MP IR", + "value": 6, + "type": "num" + } + ], + "payload": "", + "topic": "acq_fnumber_objective", + "topicType": "str", + "x": 910, + "y": 520, + "wires": [ + [ + "a6983d3232b570a7", + "8e3b3d3c.955148" + ] + ] + }, + { + "id": "a6983d3232b570a7", + "type": "change", + "z": "1eaf21c8.f7a21e", + "name": "", + "rules": [ + { + "t": "set", + "p": "acq_fnumber_objective", + "pt": "global", + "to": "payload", + "tot": "msg" + } + ], + "action": "", + "property": "", + "from": "", + "to": "", + "reg": false, + "x": 1240, + "y": 520, + "wires": [ + [ + "5d5ad36d2c50dcc2" + ] + ] + }, + { + "id": "11955bbeefc29ab4", + "type": "change", + "z": "1eaf21c8.f7a21e", + "name": "Get acq_fnumber_objective", + "rules": [ + { + "t": "set", + "p": "payload", + "pt": "msg", + "to": "payload.acq_fnumber_objective", + "tot": "msg" + }, + { + "t": "set", + "p": "topic", + "pt": "msg", + "to": "acq_fnumber_objective", + "tot": "str" + } + ], + "action": "", + "property": "", + "from": "", + "to": "", + "reg": false, + "x": 660, + "y": 520, + "wires": [ + [ + "6146ba22df928516" + ] + ] + }, + { + "id": 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"topic": "Resetting hardware configuration to version-specific default", + "name": "", + "x": 830, + "y": 120, + "wires": [] + }, + { + "id": "932a1ef8c2e81979", + "type": "change", + "z": "1eaf21c8.f7a21e", + "name": "Choose default hardware config", + "rules": [ + { + "t": "set", + "p": "payload", + "pt": "msg", + "to": "$join([\"/home/pi/PlanktoScope/device-backend/default-configs/\", $substringAfter(msg.payload, \"PlanktoScope \"), \".hardware.json\"])", + "tot": "jsonata" + } + ], + "action": "", + "property": "", + "from": "", + "to": "", + "reg": false, + "x": 210, + "y": 240, + "wires": [ + [ + "833dac7cbd693c53" + ] + ] + }, + { + "id": "833dac7cbd693c53", + "type": "exec", + "z": "1eaf21c8.f7a21e", + "command": "cp", + "addpay": "payload", + "append": "/home/pi/PlanktoScope/hardware.json", + "useSpawn": "false", + "timer": "", + "winHide": false, + "oldrc": false, + "name": "Copy default hardware config", + "x": 500, + "y": 240, + "wires": [ + [ + "0b67ccf37c034e90" + ], + [], + [] + ] + }, + { + "id": "0b67ccf37c034e90", + "type": "delay", + "z": "1eaf21c8.f7a21e", + "name": "", + "pauseType": "delay", + "timeout": "500", + "timeoutUnits": "milliseconds", + "rate": "1", + "nbRateUnits": "1", + "rateUnits": "second", + "randomFirst": "1", + "randomLast": "5", + "randomUnits": "seconds", + "drop": false, + "allowrate": false, + "outputs": 1, + "x": 730, + "y": 240, + "wires": [ + [ + "da3d4a90384d62a8", + "e4ead350b3d07578" + ] + ] + }, + { + "id": "2716aa5b3d027f95", + "type": "change", + "z": "1eaf21c8.f7a21e", + "name": "Get acq_instrument", + "rules": [ + { + "t": "set", + "p": "payload", + "pt": "msg", + "to": "payload.acq_instrument", + "tot": "msg" + }, + { + "t": "set", + "p": "topic", + "pt": "msg", + "to": "acq_instrument", + "tot": "str" + } + ], + "action": "", + "property": "", + "from": "", + "to": "", + "reg": false, + "x": 330, + "y": 160, + "wires": [ + [ + "a7e5c7f4.644678" + ] + ] + } ] diff --git a/software/node-red-dashboard/planktoscopehat/flows.json b/software/node-red-dashboard/planktoscopehat/flows.json index d4964f0ab..5b6fe2817 100644 --- a/software/node-red-dashboard/planktoscopehat/flows.json +++ b/software/node-red-dashboard/planktoscopehat/flows.json @@ -1,7492 +1,8749 @@ [ - { - "id": "eaae323a.31b3", - "type": "tab", - "label": "Home", - "disabled": false, - "info": "" - }, - { - "id": "b771c342.49603", - "type": "tab", - "label": "Sample", - "disabled": false, - "info": "" - }, - { - "id": "bccd1f23.87219", - "type": "tab", - "label": "Optic Configuration", - "disabled": false, - "info": "" - }, - { - "id": "baa1e3d9.cb29d", - "type": "tab", - "label": "Fluidic Acquisition", - "disabled": false, - "info": "" - }, - { - "id": "cb95299c.2817c8", - "type": "tab", - "label": "Segmentation", - "disabled": false, - "info": "" - }, - { - "id": "c1660bc.e7ff7f8", - "type": "tab", - "label": "Gallery", - "disabled": false, - "info": "" - }, - { - "id": "9daf9e2b.019fc", - "type": "tab", - "label": "Administration", - "disabled": false, - "info": "" - }, - { - "id": "1371dec5.76e671", - "type": "tab", - "label": "System Monitoring", - "disabled": false, - "info": "" - }, - { - "id": "9a22e67a.378818", - "type": "tab", - "label": "MQTT Receive", - "disabled": false, - "info": "" - }, - { - "id": "1eaf21c8.f7a21e", - "type": "tab", - "label": "Hardware Settings", - "disabled": false, - "info": "" - }, - { - "id": "1c24ad9c.bebec2", - "type": "subflow", - "name": "Config", - "info": "An input to this subflow will get the configuration to be saved to disk.\n\nOn startup, this node outputs the loaded configuration", - "category": "", - "in": [ - { - "x": 220, + { + "id": "eaae323a.31b3", + "type": "tab", + "label": "Home", + "disabled": false, + "info": "" + }, + { + "id": "b771c342.49603", + "type": "tab", + "label": "Sample", + "disabled": false, + "info": "" + }, + { + "id": "bccd1f23.87219", + "type": "tab", + "label": "Optic Configuration", + "disabled": false, + "info": "" + }, + { + "id": "baa1e3d9.cb29d", + "type": "tab", + "label": "Fluidic Acquisition", + "disabled": false, + "info": "" + }, + { + "id": "cb95299c.2817c8", + "type": "tab", + "label": "Segmentation", + "disabled": false, + "info": "" + }, + { + "id": "c1660bc.e7ff7f8", + "type": "tab", + "label": "Gallery", + "disabled": false, + "info": "" + }, + { + "id": "9daf9e2b.019fc", + "type": "tab", + "label": "Administration", + "disabled": false, + "info": "" + }, + { + "id": "1371dec5.76e671", + "type": "tab", + "label": "System Monitoring", + "disabled": false, + "info": "" + }, + { + "id": "9a22e67a.378818", + "type": "tab", + "label": "MQTT Receive", + "disabled": false, + "info": "" + }, + { + "id": "1eaf21c8.f7a21e", + "type": "tab", + "label": "Hardware Settings", + "disabled": false, + "info": "" + }, + { + "id": "1c24ad9c.bebec2", + "type": "subflow", + "name": "Config", + "info": "An input to this subflow will get the configuration to be saved to disk.\n\nOn startup, this node outputs the loaded configuration", + "category": "", + "in": [ + { + "x": 220, + "y": 160, + "wires": [ + { + "id": "3ad9835.08c937c" + } + ] + } + ], + "out": [ + { + "x": 1040, + "y": 60, + "wires": [ + { + "id": "ad541674.4791c8", + "port": 0 + } + ] + } + ], + "env": [], + "color": "#DDAA99" + }, + { + "id": "4ed26b8b.253504", + "type": "subflow", + "name": "Save hardware config", + "info": "", + "category": "", + "in": [ + { + "x": 40, + "y": 40, + "wires": [ + { + "id": "53d163be.47cf24" + } + ] + } + ], + "out": [], + "env": [], + "meta": {}, + "color": "#DDAA99" + }, + { + "id": "b7861ce703215a01", + "type": "subflow", + "name": "Load hardware config", + "info": "", + "category": "", + "in": [ + { + "x": 40, + "y": 40, + "wires": [ + { + "id": "0f16258953fae292" + } + ] + } + ], + "out": [ + { + "x": 900, + "y": 40, + "wires": [ + { + "id": "d0fbcd200cd09981", + "port": 0 + } + ] + } + ], + "env": [], + "meta": {}, + "color": "#DDAA99" + }, + { + "id": "3a6bb13f.c9703e", + "type": "ui_tab", + "name": "Home", + "icon": "home", + "order": 1, + "disabled": false, + "hidden": false + }, + { + "id": "181bb236.1e94be", + "type": "ui_tab", + "name": "Optic Configuration", + "icon": "fa-eye", + "order": 3, + "disabled": false, + "hidden": false + }, + { + "id": "c9194f02.9d5e9", + "type": "ui_tab", + "name": "Fluidic Acquisition", + "icon": "fa-flask", + "order": 4, + "disabled": false, + "hidden": false + }, + { + "id": "8d16beb8.9b3fb", + "type": "ui_tab", + "name": "Segmentation", + "icon": "fa-crop", + "order": 5, + "disabled": false, + "hidden": false + }, + { + "id": "d9cd733b.ab73d", + "type": "ui_tab", + "name": "System Monitoring", + "icon": "fa-thermometer-full", + "order": 7, + "disabled": false, + "hidden": false + }, + { + "id": "4248342d.e55fac", + "type": "ui_group", + "name": "Optic Characterization", + "tab": "181bb236.1e94be", + "order": 4, + "disp": true, + "width": "6", + "collapse": false + }, + { + "id": 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UI,Roboto,Oxygen-Sans,Ubuntu,Cantarell,Helvetica Neue,sans-serif", + "edited": true, + "reset": false + }, + "customTheme": { + "name": "Untitled Theme 1", + "default": "#4B7930", + "baseColor": "#4B7930", + "baseFont": "-apple-system,BlinkMacSystemFont,Segoe UI,Roboto,Oxygen-Sans,Ubuntu,Cantarell,Helvetica Neue,sans-serif" + }, + "themeState": { + "base-color": { + "default": "#097479", + "value": "#097479", + "edited": true + }, + "page-titlebar-backgroundColor": { + "value": "#097479", + "edited": false + }, + "page-backgroundColor": { + "value": "#111111", + "edited": false + }, + "page-sidebar-backgroundColor": { + "value": "#333333", + "edited": false + }, + "group-textColor": { + "value": "#0eb8c0", + "edited": false + }, + "group-borderColor": { + "value": "#555555", + "edited": false + }, + "group-backgroundColor": { + "value": "#333333", + "edited": false + }, + "widget-textColor": { + "value": "#eeeeee", + "edited": false + }, + "widget-backgroundColor": { + "value": "#097479", + "edited": false + }, + "widget-borderColor": { + "value": "#333333", + "edited": false + }, + "base-font": { + "value": "-apple-system,BlinkMacSystemFont,Segoe UI,Roboto,Oxygen-Sans,Ubuntu,Cantarell,Helvetica Neue,sans-serif" + } + }, + "angularTheme": { + "primary": "indigo", + "accents": "blue", + "warn": "red", + "background": "grey", + "palette": "light" + } + }, + "site": { + "name": "PlanktoScope", + "hideToolbar": "false", + "allowSwipe": "false", + "lockMenu": "false", + "allowTempTheme": "true", + "dateFormat": "Y-MM-DD", + "sizes": { + "sx": 55, + "sy": 55, + "gx": 4, + "gy": 4, + "cx": 4, + "cy": 4, + "px": 4, + "py": 4 + } + } + }, + { + "id": "36739a35.7cce36", + "type": "ui_tab", + "name": "Gallery", + "icon": "fa-file-image-o", + "order": 6, + "disabled": false, + "hidden": false + }, + { + "id": "c0ebfc57.42527", + "type": "ui_group", + "name": "Group 1", + "tab": "36739a35.7cce36", + "order": 1, + "disp": false, + "width": "24", + "collapse": false, + "className": "" + }, + { + "id": "737ec584.2eea2c", + "type": "ui_tab", + "name": "Sample", + "icon": "fa-eyedropper", + "order": 2, + "disabled": false, + "hidden": false + }, + { + "id": "6f97e7ae.270c48", + "type": "ui_group", + "name": "Group 1", + "tab": "3a6bb13f.c9703e", + "order": 2, + "disp": false, + "width": "4", + "collapse": false, + "className": "" + }, + { + "id": "3e1ba03d.f01d8", + "type": "ui_group", + "name": "Sample Identification", + "tab": "737ec584.2eea2c", + "order": 1, + "disp": true, + "width": "10", + "collapse": false + }, + { + "id": "4e0cd5ea.17e59c", + "type": "ui_group", + "name": "Group 2", + "tab": "3a6bb13f.c9703e", + "order": 3, + "disp": false, + "width": "4", + "collapse": false + }, + { + "id": "ef590206.24f6", + "type": "ui_group", + "name": "Group 3", + "tab": "3a6bb13f.c9703e", + "order": 4, + "disp": false, + "width": "4", + "collapse": false + }, + { + "id": "ae8f6620.073358", + "type": "ui_group", + "name": "Group 4", + "tab": "3a6bb13f.c9703e", + "order": 5, + "disp": false, + "width": "4", + "collapse": false + }, + { + "id": "196518b2.4d53b7", + "type": "ui_group", + "name": "Group 5", + "tab": "3a6bb13f.c9703e", + "order": 6, + "disp": false, + "width": "4", + "collapse": false + }, + { + "id": "777a7c33.fcd804", + "type": "ui_group", + "name": "Group 6", + "tab": "3a6bb13f.c9703e", + "order": 7, + "disp": false, + "width": "4", + "collapse": false + }, + { + "id": "cef1e703.bcf3c8", + "type": "ui_group", + "name": "Sample Location", + "tab": "737ec584.2eea2c", + "order": 3, + "disp": false, + "width": "10", + "collapse": false + }, + { + "id": "5517c651.b2f668", + "type": "ui_group", + "name": "Validation", + "tab": "737ec584.2eea2c", + "order": 5, + "disp": false, + "width": 10, + "collapse": false + }, + { + "id": "fbd92986.1028c8", + "type": "ui_group", + "name": "Focus Adjustment", + "tab": "181bb236.1e94be", + "order": 2, + "disp": true, + "width": 4, + "collapse": false + }, + { + "id": "707d9797.c8e798", + "type": "ui_group", + "name": "Fluidic Manual Manipulation", + "tab": "181bb236.1e94be", + "order": 5, + "disp": true, + "width": 4, + "collapse": false + }, + { + "id": "7a0b4877.a5d268", + "type": "ui_group", + "name": "Navigation", + "tab": "181bb236.1e94be", + "order": 6, + "disp": false, + "width": 4, + "collapse": false + }, + { + "id": "4322c187.e73e5", + "type": "ui_group", + "name": "Acquisition", + "tab": "c9194f02.9d5e9", + "order": 3, + "disp": true, + "width": 10, + "collapse": false + }, + { + "id": "b7919ae2.c01788", + "type": "ui_group", + "name": "Navigation", + "tab": "c9194f02.9d5e9", + "order": 6, + "disp": false, + "width": "10", + "collapse": false + }, + { + "id": "b5d61bc7.54fe48", + "type": "ui_group", + "name": "Statistics", + "tab": "c9194f02.9d5e9", + "order": 4, + "disp": true, + "width": "10", + "collapse": false + }, + { + "id": "8dc3722c.06efa8", + "type": "mqtt-broker", + "name": "", + "broker": "0.0.0.0", + "port": "1883", + "clientid": "Client_node", + "autoConnect": true, + "usetls": false, + "compatmode": false, + "protocolVersion": 4, + "keepalive": "60", + "cleansession": true, + "birthTopic": "", + "birthQos": "0", + "birthPayload": "", + "closeTopic": "", + "closeQos": "0", + "closePayload": "", + "willTopic": "", + "willQos": "0", + "willPayload": "" + }, + { + "id": "abeb6dad.635a2", + "type": "ui_group", + "name": "Control", + "tab": "8d16beb8.9b3fb", + "order": 1, + "disp": true, + "width": 10, + "collapse": false + }, + { + "id": "cf5d9f0e.d57e7", + "type": "ui_group", + "name": "Net Metadata", + "tab": "737ec584.2eea2c", + "order": 4, + "disp": false, + "width": "10", + "collapse": false + }, + { + "id": "ce9e278.781eed8", + "type": "ui_group", + "name": "Information", + "tab": "d9cd733b.ab73d", + "order": 5, + "disp": true, + "width": 6, + "collapse": false + }, + { + "id": "70de8209.68416c", + "type": "ui_group", + "name": "Status", + "tab": "c9194f02.9d5e9", + "order": 5, + "disp": true, + "width": 10, + "collapse": false + }, + { + "id": "46be9c86.dea684", + "type": "ui_group", + "name": "Status", + "tab": "8d16beb8.9b3fb", + "order": 2, + "disp": true, + "width": 10, + "collapse": false + }, + { + "id": "8c38a81e.9897a8", + "type": "ui_group", + "name": "Camera Settings", + "tab": "181bb236.1e94be", + "order": 3, + "disp": true, + "width": 6, + "collapse": false + }, + { + "id": "2489e51c.eed77a", + "type": "ui_tab", + "name": "Administration", + "icon": "dashboard", + "order": 9, + "disabled": false, + "hidden": false + }, + { + "id": "b0fb559a.6966a8", + "type": "ui_tab", + "name": "Hardware Settings", + "icon": "fa-cogs", + "disabled": false, + "hidden": false + }, + { + "id": "6be36295.0ab324", + "type": "ui_group", + "name": "Settings", + "tab": "b0fb559a.6966a8", + "order": 1, + "disp": false, + "width": "8", + "collapse": false, + "className": "" + }, + { + "id": "f3ca28ef.4df0a8", + "type": "ui_group", + "name": "Shutdown", + "tab": "3a6bb13f.c9703e", + "order": 8, + "disp": true, + "width": 4, + "collapse": false + }, + { + "id": "3dfd8a69.69ed56", + "type": "ui_spacer", + "name": "spacer", + "group": "f3ca28ef.4df0a8", + "order": 3, + "width": 4, + "height": 1 + }, + { + "id": "72a9216.2ff48e", + "type": "ui_spacer", + "name": "spacer", + "group": "4322c187.e73e5", + "order": 8, + "width": 10, + "height": 1 + }, + { + "id": "1b664927.c91d1f", + "type": "ui_spacer", + "name": "spacer", + "group": "b5d61bc7.54fe48", + "order": 2, + "width": 2, + "height": 1 + }, + { + "id": "1a663b6a.ab5805", + "type": "ui_spacer", + "name": "spacer", + "group": "b5d61bc7.54fe48", + "order": 4, + "width": 2, + "height": 1 + }, + { + "id": "8eeed8d8.ad9098", + "type": "ui_spacer", + "name": "spacer", + "group": "b5d61bc7.54fe48", + "order": 5, + "width": 2, + "height": 1 + }, + { + "id": "be1c5ce7.004e", + "type": "ui_spacer", + "name": "spacer", + "group": "b5d61bc7.54fe48", + "order": 6, + "width": 2, + "height": 1 + }, + { + "id": "c2fe38e9.555e3", + "type": "ui_spacer", + "name": "spacer", + "group": "b5d61bc7.54fe48", + "order": 7, + "width": 2, + "height": 1 + }, + { + "id": "89bd18b7.c779a8", + "type": "ui_spacer", + "name": "spacer", + "group": "b5d61bc7.54fe48", + "order": 8, + "width": 2, + "height": 1 + }, + { + "id": "3cbbfa5d.efa636", + "type": "ui_spacer", + "name": "spacer", + "group": "b7919ae2.c01788", + "order": 2, + "width": 5, + "height": 1 + }, + { + "id": "97148e8d8e298f1a", + "type": "ui_spacer", + "z": "cb95299c.2817c8", + "name": "spacer", + "group": "abeb6dad.635a2", + "order": 7, + "width": 10, + "height": 1 + }, + { + "id": "3b2eccc574e6a9ae", + "type": "ui_spacer", + "z": "cb95299c.2817c8", + "name": "spacer", + "group": "abeb6dad.635a2", + "order": 11, + "width": 1, + "height": 1 + }, + { + "id": "bbd6431d97c86f97", + "type": "ui_spacer", + "z": "cb95299c.2817c8", + "name": "spacer", + "group": "46be9c86.dea684", + "order": 4, + "width": 3, + "height": 1 + }, + { + "id": "5f98f5f140f0ecde", + "type": "ui_spacer", + "z": "cb95299c.2817c8", + "name": "spacer", + "group": "46be9c86.dea684", + "order": 6, + "width": 3, + "height": 1 + }, + { + "id": "7bc0a4c416e4545c", + "type": "ui_group", + "name": "Culture Date and Time", + "tab": "737ec584.2eea2c", + "order": 2, + "disp": true, + "width": "10", + "collapse": false, + "className": "" + }, + { + "id": "6c31ad948a9d62fd", + "type": "ui_spacer", + "z": "b771c342.49603", + "name": "spacer", + "group": "3e1ba03d.f01d8", + "order": 5, + "width": 10, + "height": 1 + }, + { + "id": "0035a03e1490cd8c", + "type": "ui_group", + "name": "Setup", + "tab": "3a6bb13f.c9703e", + "order": 1, + "disp": true, + "width": "8", + "collapse": false, + "className": "" + }, + { + "id": "833bc5bb.217ba8", + "type": "ui_group", + "name": "Preview", + "tab": "181bb236.1e94be", + "order": 1, + "disp": true, + "width": 18, + "collapse": false + }, + { + "id": "a7d64879.38298", + "type": "ui_group", + "name": "Logs", + "tab": "2489e51c.eed77a", + "order": 1, + "disp": true, + "width": "12", + "collapse": true, + "className": "" + }, + { + "id": "6465bdd5.15eb8c", + "type": "file in", + "z": "1c24ad9c.bebec2", + "name": "", + "filename": "/home/pi/PlanktoScope/config.json", + "filenameType": "str", + "format": "utf8", + "chunk": false, + "sendError": false, + "encoding": "none", + "x": 560, + "y": 60, + "wires": [ + [ + "15ceb135.6628bf" + ] + ], + "info": "# PlanktoScope Help\nThis Node will read the content of the file named **config.txt** containing all the input placeholders.\n" + }, + { + "id": "15ceb135.6628bf", + "type": "json", + "z": "1c24ad9c.bebec2", + "name": "config.json", + "property": "payload", + "action": "", + "pretty": false, + "x": 730, + "y": 60, + "wires": [ + [ + "ad541674.4791c8" + ] + ] + }, + { + "id": "7205d267.36adcc", + "type": "file", + "z": "1c24ad9c.bebec2", + "name": "", + "filename": "/home/pi/PlanktoScope/config.json", + "appendNewline": true, + "createDir": true, + "overwriteFile": "true", + "encoding": "none", + "x": 990, "y": 160, "wires": [ - { - "id": "3ad9835.08c937c" - } + [] ] - } - ], - "out": [ - { - "x": 1040, + }, + { + "id": "2e6ddf51.c0dba", + "type": "json", + "z": "1c24ad9c.bebec2", + "name": "config.json", + "property": "payload", + "action": "str", + "pretty": true, + "x": 730, + "y": 160, + "wires": [ + [ + "7205d267.36adcc" + ] + ] + }, + { + "id": "ad541674.4791c8", + "type": "function", + "z": "1c24ad9c.bebec2", + "name": "Global Set", + "func": "global.set(\"config_keys\", Object.keys(msg.payload));\n\nfor (const key in msg.payload) {\n global.set(key, msg.payload[key]);\n}\n\nreturn msg;", + "outputs": 1, + "timeout": "", + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 910, + "y": 60, + "wires": [ + [] + ] + }, + { + "id": "3e9a33c.141384c", + "type": "inject", + "z": "1c24ad9c.bebec2", + "name": "Load config", + "props": [ + { + "p": "topic", + "vt": "str" + } + ], + "repeat": "", + "crontab": "", + "once": true, + "onceDelay": 0.1, + "topic": "", + "payloadType": "str", + "x": 230, "y": 60, "wires": [ - { - "id": "ad541674.4791c8", - "port": 0 - } - ] - } - ], - "env": [], - "color": "#DDAA99" - }, - { - "id": "4ed26b8b.253504", - "type": "subflow", - "name": "Save hardware config", - "info": "", - "category": "", - "in": [ - { - "x": 40, + [ + "6465bdd5.15eb8c" + ] + ] + }, + { + "id": "3ad9835.08c937c", + "type": "function", + "z": "1c24ad9c.bebec2", + "name": "get config payload", + "func": "keys = global.get(\"config_keys\")\n\nvar payload = {}\n\nkeys.forEach(function(item, index, array) {\n payload[item] = global.get(item);\n})\n\nreturn {\"payload\": payload};", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 410, + "y": 160, + "wires": [ + [ + "2e6ddf51.c0dba" + ] + ] + }, + { + "id": "f439663c.8abd3", + "type": "ui_ui_control", + "z": "1c24ad9c.bebec2", + "name": "Connect Event", + "events": "connect", + "x": 220, + "y": 100, + "wires": [ + [ + "6465bdd5.15eb8c" + ] + ] + }, + { + "id": "82099021.9ceb08", + "type": "file", + "z": "4ed26b8b.253504", + "name": "", + "filename": "/home/pi/PlanktoScope/hardware.json", + "appendNewline": true, + "createDir": true, + "overwriteFile": "true", + "encoding": "none", + "x": 660, "y": 40, "wires": [ - { - "id": "53d163be.47cf24" - } - ] - } - ], - "out": [], - "env": [], - "meta": {}, - "color": "#DDAA99" - }, - { - "id": "b7861ce703215a01", - "type": "subflow", - "name": "Load hardware config", - "info": "", - "category": "", - "in": [ - { - "x": 40, + [] + ] + }, + { + "id": "bb0a8725.a1849", + "type": "json", + "z": "4ed26b8b.253504", + "name": "Create JSON", + "property": "payload", + "action": "str", + "pretty": true, + "x": 490, "y": 40, "wires": [ - { - "id": "0f16258953fae292" - } + [ + "82099021.9ceb08" + ] ] - } - ], - "out": [ - { - "x": 900, + }, + { + "id": "53d163be.47cf24", + "type": "function", + "z": "4ed26b8b.253504", + "name": "Update and retrieve hardware_conf", + "func": "// change global\nhardware_conf = global.get(\"hardware_conf\");\n\nif (msg.topic == \"process_pixel_fixed\" && msg.payload == 0){\n delete hardware_conf[msg.topic]\n delete msg.topic\n}\n\nif (msg.topic !== null && msg.topic !== undefined){\n hardware_conf[msg.topic] = msg.payload;\n global.set(\"hardware_conf\", hardware_conf);\n}\n\nreturn {\"payload\": hardware_conf};", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 240, "y": 40, "wires": [ - { - "id": "d0fbcd200cd09981", - "port": 0 - } - ] - } - ], - "env": [], - "meta": {}, - "color": "#DDAA99" - }, - { - "id": "3a6bb13f.c9703e", - "type": "ui_tab", - "name": "Home", - "icon": "home", - "order": 1, - "disabled": false, - "hidden": false - }, - { - "id": "181bb236.1e94be", - "type": "ui_tab", - "name": "Optic Configuration", - "icon": "fa-eye", - "order": 3, - "disabled": false, - "hidden": false - }, - { - "id": "c9194f02.9d5e9", - "type": "ui_tab", - "name": "Fluidic Acquisition", - "icon": 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"Metrics", - "tab": "d9cd733b.ab73d", - "order": 1, - "disp": true, - "width": "24", - "collapse": true, - "className": "" - }, - { - "id": "cc8bc4eb.651868", - "type": "ui_base", - "theme": { - "name": "theme-dark", - "lightTheme": { - "default": "#0094CE", - "baseColor": "#5900ce", - "baseFont": "-apple-system,BlinkMacSystemFont,Segoe UI,Roboto,Oxygen-Sans,Ubuntu,Cantarell,Helvetica Neue,sans-serif", - "edited": false, - "reset": false - }, - "darkTheme": { - "default": "#097479", - "baseColor": "#097479", - "baseFont": "-apple-system,BlinkMacSystemFont,Segoe UI,Roboto,Oxygen-Sans,Ubuntu,Cantarell,Helvetica Neue,sans-serif", - "edited": true, - "reset": false - }, - "customTheme": { - "name": "Untitled Theme 1", - "default": "#4B7930", - "baseColor": "#4B7930", - "baseFont": "-apple-system,BlinkMacSystemFont,Segoe UI,Roboto,Oxygen-Sans,Ubuntu,Cantarell,Helvetica Neue,sans-serif" - }, - "themeState": { - "base-color": { - "default": "#097479", - "value": "#097479", - "edited": true - 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"false", - "allowSwipe": "false", - "lockMenu": "false", - "allowTempTheme": "true", - "dateFormat": "Y-MM-DD", - "sizes": { - "sx": 55, - "sy": 55, - "gx": 4, - "gy": 4, - "cx": 4, - "cy": 4, - "px": 4, - "py": 4 - } - } - }, - { - "id": "36739a35.7cce36", - "type": "ui_tab", - "name": "Gallery", - "icon": "fa-file-image-o", - "order": 6, - "disabled": false, - "hidden": false - }, - { - "id": "c0ebfc57.42527", - "type": "ui_group", - "name": "Group 1", - "tab": "36739a35.7cce36", - "order": 1, - "disp": false, - "width": "24", - "collapse": false, - "className": "" - }, - { - "id": "737ec584.2eea2c", - "type": "ui_tab", - "name": "Sample", - "icon": "fa-eyedropper", - "order": 2, - "disabled": false, - "hidden": false - }, - { - "id": "6f97e7ae.270c48", - "type": "ui_group", - "name": "Group 1", - "tab": "3a6bb13f.c9703e", - "order": 2, - "disp": false, - "width": "4", - "collapse": false, - "className": "" - }, - { - "id": "3e1ba03d.f01d8", - "type": "ui_group", - "name": "Sample 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"order": 3, - "disp": true, - "width": 10, - "collapse": false - }, - { - "id": "b7919ae2.c01788", - "type": "ui_group", - "name": "Navigation", - "tab": "c9194f02.9d5e9", - "order": 6, - "disp": false, - "width": "10", - "collapse": false - }, - { - "id": "b5d61bc7.54fe48", - "type": "ui_group", - "name": "Statistics", - "tab": "c9194f02.9d5e9", - "order": 4, - "disp": true, - "width": "10", - "collapse": false - }, - { - "id": "8dc3722c.06efa8", - "type": "mqtt-broker", - "name": "", - "broker": "0.0.0.0", - "port": "1883", - "clientid": "Client_node", - "autoConnect": true, - "usetls": false, - "compatmode": false, - "protocolVersion": 4, - "keepalive": "60", - "cleansession": true, - "birthTopic": "", - "birthQos": "0", - "birthPayload": "", - "closeTopic": "", - "closeQos": "0", - "closePayload": "", - "willTopic": "", - "willQos": "0", - "willPayload": "" - }, - { - "id": "abeb6dad.635a2", - "type": "ui_group", - "name": "Control", - "tab": "8d16beb8.9b3fb", - "order": 1, - 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- "type": "ui_spacer", - "z": "cb95299c.2817c8", - "name": "spacer", - "group": "abeb6dad.635a2", - "order": 7, - "width": 10, - "height": 1 - }, - { - "id": "3b2eccc574e6a9ae", - "type": "ui_spacer", - "z": "cb95299c.2817c8", - "name": "spacer", - "group": "abeb6dad.635a2", - "order": 11, - "width": 1, - "height": 1 - }, - { - "id": "bbd6431d97c86f97", - "type": "ui_spacer", - "z": "cb95299c.2817c8", - "name": "spacer", - "group": "46be9c86.dea684", - "order": 4, - "width": 3, - "height": 1 - }, - { - "id": "5f98f5f140f0ecde", - "type": "ui_spacer", - "z": "cb95299c.2817c8", - "name": "spacer", - "group": "46be9c86.dea684", - "order": 6, - "width": 3, - "height": 1 - }, - { - "id": "7bc0a4c416e4545c", - "type": "ui_group", - "name": "Culture Date and Time", - "tab": "737ec584.2eea2c", - "order": 2, - "disp": true, - "width": "10", - "collapse": false, - "className": "" - }, - { - "id": "6c31ad948a9d62fd", - "type": "ui_spacer", - "z": "b771c342.49603", - "name": "spacer", - "group": "3e1ba03d.f01d8", - "order": 5, - "width": 10, - "height": 1 - }, - { - "id": "0035a03e1490cd8c", - "type": "ui_group", - "name": "Setup", - "tab": "3a6bb13f.c9703e", - "order": 1, - "disp": true, - "width": "8", - "collapse": false, - "className": "" - }, - { - "id": "833bc5bb.217ba8", - "type": "ui_group", - "name": "Preview", - "tab": "181bb236.1e94be", - "order": 1, - "disp": true, - "width": 18, - "collapse": false - }, - { - "id": "a7d64879.38298", - "type": "ui_group", - "name": "Logs", - "tab": "2489e51c.eed77a", - "order": 1, - "disp": true, - "width": "12", - "collapse": true, - "className": "" - }, - { - "id": "6465bdd5.15eb8c", - "type": "file in", - "z": "1c24ad9c.bebec2", - "name": "", - "filename": "/home/pi/PlanktoScope/config.json", - "filenameType": "str", - "format": "utf8", - "chunk": false, - "sendError": false, - "encoding": "none", - "x": 560, - "y": 60, - "wires": [["15ceb135.6628bf"]], - "info": "# PlanktoScope Help\nThis Node will read the content of the file named **config.txt** containing all the input placeholders.\n" - }, - { - "id": "15ceb135.6628bf", - "type": "json", - "z": "1c24ad9c.bebec2", - "name": "config.json", - "property": "payload", - "action": "", - "pretty": false, - "x": 730, - "y": 60, - "wires": [["ad541674.4791c8"]] - }, - { - "id": "7205d267.36adcc", - "type": "file", - "z": "1c24ad9c.bebec2", - "name": "", - "filename": "/home/pi/PlanktoScope/config.json", - "appendNewline": true, - "createDir": true, - "overwriteFile": "true", - "encoding": "none", - "x": 990, - "y": 160, - "wires": [[]] - }, - { - "id": "2e6ddf51.c0dba", - "type": "json", - "z": "1c24ad9c.bebec2", - "name": "config.json", - "property": "payload", - "action": "str", - "pretty": true, - "x": 730, - "y": 160, - "wires": [["7205d267.36adcc"]] - }, - { - "id": "ad541674.4791c8", - "type": "function", - "z": "1c24ad9c.bebec2", - "name": "Global Set", - "func": "global.set(\"config_keys\", Object.keys(msg.payload));\n\nfor (const key in msg.payload) {\n global.set(key, msg.payload[key]);\n}\n\nreturn msg;", - "outputs": 1, - "timeout": "", - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 910, - "y": 60, - "wires": [[]] - }, - { - "id": "3e9a33c.141384c", - "type": "inject", - "z": "1c24ad9c.bebec2", - "name": "Load config", - "props": [ - { - "p": "topic", - "vt": "str" - } - ], - "repeat": "", - "crontab": "", - "once": true, - "onceDelay": 0.1, - "topic": "", - "payloadType": "str", - "x": 230, - "y": 60, - "wires": [["6465bdd5.15eb8c"]] - }, - { - "id": "3ad9835.08c937c", - "type": "function", - "z": "1c24ad9c.bebec2", - "name": "get config payload", - "func": "keys = global.get(\"config_keys\")\n\nvar payload = {}\n\nkeys.forEach(function(item, index, array) {\n payload[item] = global.get(item);\n})\n\nreturn {\"payload\": payload};", - "outputs": 1, - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 410, - "y": 160, - "wires": [["2e6ddf51.c0dba"]] - }, - { - "id": "f439663c.8abd3", - "type": "ui_ui_control", - "z": "1c24ad9c.bebec2", - "name": "Connect Event", - "events": "connect", - "x": 220, - "y": 100, - "wires": [["6465bdd5.15eb8c"]] - }, - { - "id": "82099021.9ceb08", - "type": "file", - "z": "4ed26b8b.253504", - "name": "", - "filename": "/home/pi/PlanktoScope/hardware.json", - "appendNewline": true, - "createDir": true, - "overwriteFile": "true", - "encoding": "none", - "x": 660, - "y": 40, - "wires": [[]] - }, - { - "id": "bb0a8725.a1849", - "type": "json", - "z": "4ed26b8b.253504", - "name": "Create JSON", - "property": "payload", - "action": "str", - "pretty": true, - "x": 490, - "y": 40, - "wires": [["82099021.9ceb08"]] - }, - { - "id": "53d163be.47cf24", - "type": "function", - "z": "4ed26b8b.253504", - "name": "Update and retrieve hardware_conf", - "func": "// change global\nhardware_conf = global.get(\"hardware_conf\");\n\nif (msg.topic == \"process_pixel_fixed\" && msg.payload == 0){\n delete hardware_conf[msg.topic]\n delete msg.topic\n}\n\nif (msg.topic !== null && msg.topic !== undefined){\n hardware_conf[msg.topic] = msg.payload;\n global.set(\"hardware_conf\", hardware_conf);\n}\n\nreturn {\"payload\": hardware_conf};", - "outputs": 1, - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 240, - "y": 40, - "wires": [["bb0a8725.a1849"]] - }, - { - "id": "0f16258953fae292", - "type": "file in", - "z": "b7861ce703215a01", - "name": "", - "filename": "/home/pi/PlanktoScope/hardware.json", - "filenameType": "str", - "format": "utf8", - "chunk": false, - "sendError": false, - "encoding": "none", - "allProps": false, - "x": 250, - "y": 40, - "wires": [["81c516291ab19acd"]], - "info": "# PlanktoScope Help\nThis Node will read the content of the file named **config.txt** containing all the input placeholders.\n" - }, - { - "id": "81c516291ab19acd", - "type": "json", - "z": "b7861ce703215a01", - "name": "Parse JSON", - "property": "payload", - "action": "", - "pretty": false, - "x": 510, - "y": 40, - "wires": [["d0fbcd200cd09981"]] - }, - { - "id": "d0fbcd200cd09981", - "type": "change", - "z": "b7861ce703215a01", - "name": "", - "rules": [ - { - "t": "set", - "p": "hardware_conf", - "pt": "global", - "to": "payload", - "tot": "msg" - } - ], - "action": "", - "property": "", - "from": "", - "to": "", - "reg": false, - "x": 730, - "y": 40, - "wires": [[]] - }, - { - "id": "4e78af2d.90be7", - "type": "ui_ui_control", - "z": "eaae323a.31b3", - "name": "", - "events": "change", - "x": 440, - "y": 160, - "wires": [[]] - }, - { - "id": "7789839d.69b48c", - "type": "ui_template", - "z": "eaae323a.31b3", - "group": "4e0cd5ea.17e59c", - "name": "Optic Configuration", - "order": 1, - "width": 4, - "height": 4, - "format": "\n \n
Optic Configuration
\n", - "storeOutMessages": true, - "fwdInMessages": true, - "resendOnRefresh": false, - "templateScope": "local", - "className": "", - "x": 130, - "y": 100, - "wires": [["4e78af2d.90be7"]] - }, - { - "id": "6ea6c306.f9c12c", - "type": "ui_template", - "z": "eaae323a.31b3", - "group": "ef590206.24f6", - "name": "Fluidic Acquisition", - "order": 1, - "width": 4, - "height": 4, - "format": "\n \n
Fluidic Acquisition
\n", - "storeOutMessages": true, - "fwdInMessages": true, - "resendOnRefresh": false, - "templateScope": "local", - "className": "", - "x": 130, - "y": 140, - "wires": [["4e78af2d.90be7"]] - }, - { - "id": "bb9eb153.9e36c", - "type": "ui_template", - "z": "eaae323a.31b3", - "group": "ae8f6620.073358", - "name": "Segmentation", - "order": 1, - "width": 4, - "height": 4, - "format": "\n \n
Segmentation
\n", - "storeOutMessages": true, - "fwdInMessages": true, - "resendOnRefresh": false, - "templateScope": "local", - "className": "", - "x": 140, - "y": 180, - "wires": [["4e78af2d.90be7"]] - }, - { - "id": "eaf8ee7f.96f44", - "type": "ui_template", - "z": "eaae323a.31b3", - "group": "196518b2.4d53b7", - "name": "Gallery", - "order": 1, - "width": 4, - "height": 4, - "format": "\n \n
Gallery
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System Monitoring
\n", - "storeOutMessages": true, - "fwdInMessages": true, - "resendOnRefresh": false, - "templateScope": "local", - "className": "", - "x": 130, - "y": 260, - "wires": [["4e78af2d.90be7"]] - }, - { - "id": "abafd6e6.04a5f8", - "type": "ui_template", - "z": "eaae323a.31b3", - "group": "6f97e7ae.270c48", - "name": "Sample", - "order": 1, - "width": 4, - "height": 4, - "format": "\n \n
Sample
\n
\n In doubt? Start Here!\n", - "storeOutMessages": true, - "fwdInMessages": true, - "resendOnRefresh": false, - "templateScope": "local", - "className": "", - "x": 160, - "y": 60, - "wires": [["4e78af2d.90be7"]] - }, - { - "id": "dab82064.26a8d", - "type": "ui_button", - "z": "eaae323a.31b3", - "name": "Unlock button", - "group": "f3ca28ef.4df0a8", - "order": 2, - "width": 0, - "height": 0, - "passthru": false, - "label": "Unlock button", - "tooltip": "", - "color": "", - "bgcolor": "", - "icon": "", - "payload": "shutdown", - "payloadType": "flow", - "topic": "", - "x": 120, - "y": 380, - "wires": [["6c3a3b4.78cad44"]] - }, - { - "id": "1c658761.b852a1", - "type": "ui_toast", - "z": "eaae323a.31b3", - "position": "dialog", - "displayTime": "3", - "highlight": "", - "sendall": true, - "outputs": 1, - "ok": "YES PLEASE", - "cancel": "NO!", - "raw": false, - "topic": "Are you sure?", - "name": "Confirmation message", - "x": 800, - "y": 380, - "wires": [["8f1b8e23.daafe"]] - }, - { - "id": "a48ff63f.db5e18", - "type": "inject", - "z": "eaae323a.31b3", - "name": "disabled", - "props": [ - { - "p": "enabled", - "v": "false", - "vt": "bool" - } - ], - "repeat": "", - "crontab": "", - "once": true, - "onceDelay": 0.1, - "topic": "", - "x": 140, - "y": 420, - "wires": [["d58039a9.6e7928"]] - }, - { - "id": "b67a7147.65fcd8", - "type": "ui_button", - "z": "eaae323a.31b3", - "name": "Shutdown button", - "group": "f3ca28ef.4df0a8", - "order": 4, - "width": 0, - "height": 0, - "passthru": false, - "label": "Shutdown", - "tooltip": "", - "color": "", - "bgcolor": "#AD1625", - "icon": "fa-power-off fa-2x", - "payload": "Do you want to turn the machine off now?", - "payloadType": "str", - "topic": "", - "x": 550, - "y": 380, - "wires": [["1c658761.b852a1"]] - }, - { - "id": "d58039a9.6e7928", - "type": "change", - "z": "eaae323a.31b3", - "name": "", - "rules": [ - { - "t": "set", - "p": "shutdown", - "pt": "flow", - "to": "false", - "tot": "bool" - }, - { - "t": "set", - "p": "enabled", - "pt": "msg", - "to": "shutdown", - "tot": "flow" - } - ], - "action": "", - "property": "", - "from": "", - "to": "", - "reg": false, - "x": 320, - "y": 420, - "wires": [["b67a7147.65fcd8"]] - }, - { - "id": "6c3a3b4.78cad44", - "type": "function", - "z": "eaae323a.31b3", - "name": "Toggle", - "func": "flow.set(\"shutdown\", !flow.get(\"shutdown\"))\nmsg.enabled = flow.get(\"shutdown\")\nreturn msg;", - "outputs": 1, - "noerr": 0, - "initialize": "", - "finalize": "", - "x": 290, - "y": 380, - "wires": [["b67a7147.65fcd8"]] - }, - { - "id": "d1153ad6.40d738", - "type": "ui_template", - "z": "eaae323a.31b3", - "group": "f3ca28ef.4df0a8", - "name": "Shutdown information", - "order": 1, - "width": 0, - "height": 0, - "format": "
To prevent data corruption, please always shutdown the machine before unplugging the unit.\n

\nRemember to first unlock the shutdown button.\n
", - "storeOutMessages": true, - "fwdInMessages": false, - "resendOnRefresh": true, - "templateScope": "local", - "x": 120, - "y": 320, - "wires": [[]] - }, - { - "id": "e08cfcb8.2a67e8", - "type": "link out", - "z": "eaae323a.31b3", - "name": "Home shutdown button", - "links": ["b81b990a.d4dca"], - "x": 715, - "y": 500, - "wires": [] - }, - { - "id": "ce7087fc.dcc9e8", - "type": "ui_toast", - "z": "eaae323a.31b3", - "position": "dialog", - "displayTime": "10", - "highlight": "", - "sendall": true, - "outputs": 1, - "ok": "OK", - "cancel": "", - "raw": false, - "topic": "Turning off now!", - "name": "Shutdown message", - "x": 580, - "y": 540, - "wires": [[]] - }, - { - "id": "7d1626a0.deb85", - "type": "change", - "z": "eaae323a.31b3", - "name": "shutdown!", - "rules": [ - { - "t": "set", - "p": "payload", - "pt": "msg", - "to": "shutdown", - "tot": "str" - } - ], - "action": "", - "property": "", - "from": "", - "to": "", - "reg": false, - "x": 310, - "y": 500, - "wires": [["e08cfcb8.2a67e8"]] - }, - { - "id": "8f1b8e23.daafe", - "type": "switch", - "z": "eaae323a.31b3", - "name": "", - "property": "payload", - "propertyType": "msg", - "rules": [ - { - "t": "eq", - "v": "NO!", - "vt": "str" - }, - { - "t": "else" - } - ], - "checkall": "true", - "repair": false, - "outputs": 2, - "x": 150, - "y": 500, - "wires": [["d58039a9.6e7928"], ["7d1626a0.deb85", "281a56c9.ec7902"]] - }, - { - "id": "281a56c9.ec7902", - "type": "change", - "z": "eaae323a.31b3", - "name": "Shutdown message", - "rules": [ - { - "t": "set", - "p": "payload", - "pt": "msg", - "to": "Please wait a minute before disconnecting the machine from its power supply!", - "tot": "str" - } - ], - "action": "", - "property": "", - "from": "", - "to": "", - "reg": false, - "x": 340, - "y": 540, - "wires": [["ce7087fc.dcc9e8"]] - }, - { - "id": "57db4f6279b5afe0", - "type": "comment", - "z": "eaae323a.31b3", - "name": "LICENSE", - "info": "Copyright 2022 Thibaut Pollina and Romain Bazile\nLicensed under GPL v3.0", - "x": 140, - "y": 600, - "wires": [] - }, - { - "id": "6af85f0e0fc21b11", - "type": "ui_ui_control", - "z": "eaae323a.31b3", - "name": "", - "events": "all", - "x": 700, - "y": 720, - "wires": [[]] - }, - { - "id": "382f8fcc81f904f1", - "type": "ui_dropdown", - "z": "eaae323a.31b3", - "name": "", - "label": "Hardware version", - "tooltip": "", - "place": "Select option", - "group": "0035a03e1490cd8c", - "order": 2, - "width": 0, - "height": 0, - "passthru": false, - "multiple": false, - "options": [ - { - "label": "", - "value": "PlanktoScope v2.3", - "type": "str" - }, - { - "label": "", - "value": "PlanktoScope v2.5", - "type": "str" - }, - { - "label": "", - "value": "PlanktoScope v2.6", - "type": "str" - }, - { - "label": "", - "value": "PlanktoScope v3.0", - "type": "str" - } - ], - "payload": "", - "topic": "acq_instrument", - "topicType": "str", - "className": "", - "x": 490, - "y": 640, - "wires": [["9f34e4a2f33c4022"]] - }, - { - "id": "9f34e4a2f33c4022", - "type": "link out", - "z": "eaae323a.31b3", - "name": "Set hardware version", - "mode": "link", - "links": ["cb9009e8a49e93cc"], - "x": 655, - "y": 640, - "wires": [] - }, - { - "id": "e954204b947a0c70", - "type": "switch", - "z": "eaae323a.31b3", - "name": "", - "property": "payload", - "propertyType": "msg", - "rules": [ - { - "t": "null" - }, - { - "t": "else" - } - ], - "checkall": "true", - "repair": false, - "outputs": 2, - "x": 290, - "y": 680, - "wires": [["382f8fcc81f904f1", "e3736dd7be4b7522"], ["f80babd43aa7cce4"]] - }, - { - "id": "e3736dd7be4b7522", - "type": "change", - "z": "eaae323a.31b3", - "name": "Show setup panel", - "rules": [ - { - "t": "set", - "p": "payload", - "pt": "msg", - "to": "{\"group\":{\"show\":[\"Home_Setup\"],\"hide\":[\"Home_Group_1\",\"Home_Group_2\",\"Home_Group_3\",\"Home_Group_4\",\"Home_Group_5\",\"Home_Group_6\"]}}", - "tot": "json" - } - ], - "action": "", - "property": "", - "from": "", - "to": "", - "reg": false, - "x": 490, - "y": 680, - "wires": [["6af85f0e0fc21b11"]] - }, - { - "id": "f80babd43aa7cce4", - "type": "change", - "z": "eaae323a.31b3", - "name": "Show home buttons", - "rules": [ - { - "t": "set", - "p": "payload", - "pt": "msg", - "to": "{\"group\":{\"hide\":[\"Home_Setup\"],\"show\":[\"Home_Group_1\",\"Home_Group_2\",\"Home_Group_3\",\"Home_Group_4\",\"Home_Group_5\",\"Home_Group_6\"]}}", - "tot": "json" - } - ], - "action": "", - "property": "", - "from": "", - "to": "", - "reg": false, - "x": 500, - "y": 720, - "wires": [["6af85f0e0fc21b11"]] - }, - { - "id": "438439b4ae62444c", - "type": "ui_template", - "z": "eaae323a.31b3", - "group": "0035a03e1490cd8c", - "name": "Information", - "order": 1, - "width": "0", - "height": "0", - "format": "
\n

\n To start using your PlanktoScope, please indicate the version of your PlanktoScope hardware:\n

\n
\n", - "storeOutMessages": true, - "fwdInMessages": true, - "resendOnRefresh": true, - "templateScope": "local", - "className": "", - "x": 710, - "y": 680, - "wires": [[]] - }, - { - "id": "a2f2a4c7cbae4446", - "type": "link in", - "z": "eaae323a.31b3", - "name": "Load hardware version", - "links": ["3973b999ee7b3b1d", "56dd3f82c45717f0"], - "x": 185, - "y": 680, - "wires": [["e954204b947a0c70"]] - }, - { - "id": "4557d689.a4fa88", - "type": "ui_text_input", - "z": "b771c342.49603", - "name": "sample_ship", - "label": "Name of the ship", - "tooltip": "", - "group": "3e1ba03d.f01d8", - "order": 2, - "width": 0, - "height": 0, - "passthru": true, - "mode": "text", - "delay": "300", - "topic": "sample_ship", - "sendOnBlur": true, - "className": "", - "topicType": "str", - "x": 670, - "y": 80, - "wires": [["9f501f49.45645"]] - }, - { - "id": "fcfc31ae.af3af", - "type": "ui_dropdown", - "z": "b771c342.49603", - "name": "sample_sampling_gear", - "label": "Sampling gear*", - "tooltip": "", - "place": "Choose from list", - "group": "3e1ba03d.f01d8", - "order": 6, - "width": 0, - "height": 0, - "passthru": true, - "multiple": false, - "options": [ - { - "label": "High Speed Net", - "value": "net_hsn", - "type": "str" - }, - { - "label": "Tara Decknet", - "value": "net_decknet", - "type": "str" - }, - { - "label": "Plankton net", - "value": "net", - "type": "str" - }, - { - "label": "Niskin bottle 12L", - "value": "niskin_12L", - "type": "str" - }, - { - "label": "Niskin bottle 24L", - "value": "niskin_24L", - "type": "str" - }, - { - "label": "Pass Hull", - "value": "pass_hull", - "type": "str" - }, - { - "label": "Single location (with net or bucket)", - "value": "single_location", - "type": "str" - }, - { - "label": "Lab culture", - "value": "culture", - "type": "str" - }, - { - "label": "Test", - "value": "test", - "type": "str" - } - ], - "payload": "", - "topic": "sample_sampling_gear", - "topicType": "str", - "className": "", - "x": 630, - "y": 200, - "wires": [["9f501f49.45645", "46eb1bf8.3dc5f4", "3ac7b631f5d8ef90"]] - }, - { - "id": "82c5fc77.59c97", - "type": "ui_text_input", - "z": "b771c342.49603", - "name": "sample_operator", - "label": "Name of the operator*", - "tooltip": "", - "group": "3e1ba03d.f01d8", - "order": 3, - "width": 0, - "height": 0, - "passthru": true, - "mode": "text", - "delay": "300", - "topic": "sample_operator", - "sendOnBlur": true, - "className": "", - "topicType": "str", - "x": 650, - "y": 160, - "wires": [["9f501f49.45645"]] - }, - { - "id": "9c882b37.fde668", - "type": "ui_text_input", - "z": "b771c342.49603", - "name": "sample_project", - "label": "Name of the project*", - "tooltip": "", - "group": "3e1ba03d.f01d8", - "order": 1, - "width": 0, - "height": 0, - "passthru": true, - "mode": "text", - "delay": "300", - "topic": "sample_project", - "sendOnBlur": true, - "className": "", - "topicType": "str", - "x": 660, - "y": 40, - "wires": [["9f501f49.45645"]] - }, - { - "id": "94eb4221.9b92c", - "type": "ui_text_input", - "z": "b771c342.49603", - "name": "sample_id", - "label": "Station ID*", - "tooltip": "", - "group": "3e1ba03d.f01d8", - "order": 4, - "width": 0, - "height": 0, - "passthru": true, - "mode": "text", - "delay": "300", - "topic": "sample_id", - "sendOnBlur": true, - "className": "", - "topicType": "str", - "x": 670, - "y": 120, - "wires": [["9f501f49.45645"]] - }, - { - "id": "9f501f49.45645", - "type": "function", - "z": "b771c342.49603", - "name": "set global", - "func": "global.set(msg.topic,msg.payload);", - "outputs": 1, - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 1080, - "y": 200, - "wires": [[]] - }, - { - "id": "222c851d.5d0a3a", - "type": "ui_ui_control", - "z": "b771c342.49603", - "name": "", - "events": "change", - "x": 400, - "y": 880, - "wires": [[]] - }, - { - "id": "52f6b103.1efb6", - "type": "ui_toast", - "z": "b771c342.49603", - "position": "dialog", - "displayTime": "3", - "highlight": "", - "sendall": true, - "outputs": 1, - "ok": "OK", - "cancel": "", - "raw": false, - "topic": "", - "name": "", - "x": 710, - "y": 980, - "wires": [[]] - }, - { - "id": "986d960a.c75908", - "type": "function", - "z": "b771c342.49603", - "name": "Check form", - "func": "var sample_project= global.get(\"sample_project\");\nvar sample_id= global.get(\"sample_id\");\nvar sample_operator= global.get(\"sample_operator\");\nvar sample_sampling_gear= global.get(\"sample_sampling_gear\");\nvar object_lat= global.get(\"object_lat\");\nvar object_lon= global.get(\"object_lon\");\nvar object_date= global.get(\"object_date\");\nvar object_time= global.get(\"object_time\");\nif (sample_project === undefined || sample_project === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Sample project\"\n return [null, msg];\n}\n\nelse if (sample_id === undefined || sample_id === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Sample ID\"\n return [null, msg];\n}\n\nelse if (sample_operator === undefined || sample_operator === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Sample operator\"\n return [null, msg];\n}\n\nelse if (sample_sampling_gear === undefined || sample_sampling_gear === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Sample sampling gear\"\n return [null, msg];\n}\n\nelse if (object_lat === undefined || object_lat === null) {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Latitude of sample\"\n return [null, msg];\n}\n\nelse if (object_lon === undefined || object_lon === null) {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Longitude of sample\"\n return [null, msg];\n}\n\nelse if (object_date === undefined || object_date === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Date of sample\"\n return [null, msg];\n}\n\nelse if (object_time === undefined || object_time === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Time of sample\"\n return [null, msg];\n}\nelse if (sample_sampling_gear.startsWith(\"net\")){\n var object_lat_end = global.get(\"object_lat_end\");\n var object_lon_end = global.get(\"object_lon_end\");\n var object_date_end = global.get(\"object_date_end\");\n var object_time_end = global.get(\"object_time_end\");\n var sample_gear_net_opening = global.get(\"sample_gear_net_opening\");\n\n if (object_lat_end === undefined || object_lat_end === null) {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Latitude of retrieval\"\n return [null, msg];\n }\n \n else if (object_lon_end === undefined || object_lon_end === null) {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Longitude of retrieval\"\n return [null, msg];\n }\n \n else if (object_date_end === undefined || object_date_end === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Date of retrieval\"\n return [null, msg];\n }\n \n else if (object_time_end === undefined || object_time_end === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Time of retrieval\"\n return [null, msg];\n }\n \n else if (sample_gear_net_opening === undefined || sample_gear_net_opening === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Net opening dimension\"\n return [null, msg];\n }\n \n if (sample_sampling_gear == \"net_decknet\"){\n var sample_total_volume = global.get(\"sample_total_volume\");\n if (sample_total_volume === undefined || sample_total_volume === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Decknet flowmeter readings\"\n return [null, msg];\n }\n }\n}\nmsg.topic = \"config_save\"\nmsg.payload={\"tab\":\"Optic Configuration\"};\n\nreturn [msg, null];", - "outputs": 2, - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 470, - "y": 940, - "wires": [["726a7822.cd6298", "e2b277c1.07283"], ["52f6b103.1efb6"]], - "outputLabels": ["message", "error"] - }, - { - "id": "726a7822.cd6298", - "type": "ui_ui_control", - "z": "b771c342.49603", - "name": "", - "events": "change", - "x": 700, - "y": 900, - "wires": [[]] - }, - { - "id": "16de754c.cc969b", - "type": "ui_button", - "z": "b771c342.49603", - "name": "", - "group": "5517c651.b2f668", - "order": 1, - "width": 5, - "height": 1, - "passthru": false, - "label": "Previous", - "tooltip": "", - "color": "#097479", - "bgcolor": "white", - "icon": "keyboard_return", - "payload": "{\"tab\":\"Home\"}", - "payloadType": "json", - "topic": "", - "x": 240, - "y": 880, - "wires": [["222c851d.5d0a3a"]] - }, - { - "id": "84f3d040.5f7ea", - "type": "ui_button", - "z": "b771c342.49603", - "name": "", - "group": "5517c651.b2f668", - "order": 2, - "width": 5, - "height": 1, - "passthru": false, - "label": "Continue", - "tooltip": "", - "color": "#097479", - "bgcolor": "white", - "icon": "keyboard_tab", - "payload": "{\"tab\":\"Home\"}", - "payloadType": "json", - "topic": "", - "x": 240, - "y": 940, - "wires": [["986d960a.c75908"]] - }, - { - "id": "d027a6bf.7049e8", - "type": "function", - "z": "b771c342.49603", - "name": "get sample_projet", - "func": "msg.payload = msg.payload.sample_project;\nreturn msg;", - "outputs": 1, - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 310, - "y": 40, - "wires": [["9c882b37.fde668"]] - }, - { - "id": "5a811caf.0f3144", - "type": "function", - "z": "b771c342.49603", - "name": "get sample_ship", - "func": "msg.payload = msg.payload.sample_ship;\nreturn msg;", - "outputs": 1, - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 300, - "y": 80, - "wires": [["4557d689.a4fa88"]] - }, - { - "id": "45911c98.2bd83c", - "type": "function", - "z": "b771c342.49603", - "name": "get sample_id", - "func": "msg.payload = msg.payload.sample_id;\nreturn msg;", - "outputs": 1, - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 300, - "y": 120, - "wires": [["94eb4221.9b92c"]] - }, - { - "id": "1e09a4ab.72996b", - "type": "function", - "z": "b771c342.49603", - "name": "get sample_operator", - "func": "msg.payload = msg.payload.sample_operator;\nreturn msg;", - "outputs": 1, - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 320, - "y": 160, - "wires": [["82c5fc77.59c97"]] - }, - { - "id": "a3272681.f271c8", - "type": "function", - "z": "b771c342.49603", - "name": "get sample_sampling_gear", - "func": "msg.topic = \"sample_sampling_gear\"\nif (msg.payload.sample_sampling_gear === undefined){\n msg.payload = \"net\";\n}\nelse\n{\n msg.payload = msg.payload.sample_sampling_gear;\n}\nreturn msg;", - "outputs": 1, - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 340, - "y": 200, - "wires": [["fcfc31ae.af3af"]] - }, - { - "id": "a6907a38.f6611", - "type": "subflow:1c24ad9c.bebec2", - "z": "b771c342.49603", - "name": "", - "env": [], - "x": 70, - "y": 220, - "wires": [ - [ - "d027a6bf.7049e8", - "5a811caf.0f3144", - "45911c98.2bd83c", - "1e09a4ab.72996b", - "8dff1648.82e42", - "9f04c5ec.75f3d8", - "f408a273.4fb538", - "e73fd87d.d24e4", - "489c8e06.cc7d6", - "a3272681.f271c8" - ] - ] - }, - { - "id": "e2b277c1.07283", - "type": "subflow:1c24ad9c.bebec2", - "z": "b771c342.49603", - "name": "", - "env": [], - "x": 690, - "y": 940, - "wires": [[]] - }, - { - "id": "9c7f7fc9.c8d3a", - "type": "ui_text_input", - "z": "b771c342.49603", - "name": "object_depth_max", - "label": "Max sampling depth (m)", - "tooltip": "in m", - "group": "3e1ba03d.f01d8", - "order": 10, - "width": 5, - "height": 1, - "passthru": true, - "mode": "number", - "delay": "300", - "topic": "object_depth_max", - "sendOnBlur": true, - "className": "", - "topicType": "str", - "x": 650, - "y": 240, - "wires": [["9f501f49.45645"]] - }, - { - "id": "317eeeb7.8d3042", - "type": "ui_text_input", - "z": "b771c342.49603", - "name": "object_depth_min", - "label": "Min sampling depth (m)", - "tooltip": "in m", - "group": "3e1ba03d.f01d8", - "order": 9, - "width": 5, - "height": 1, - "passthru": true, - "mode": "number", - "delay": "300", - "topic": "object_depth_min", - "sendOnBlur": true, - "className": "", - "topicType": "str", - "x": 650, - "y": 280, - "wires": [["9f501f49.45645"]] - }, - { - "id": "cbb123ab.fd3428", - "type": "ui_ui_control", - "z": "b771c342.49603", - "name": "show/hide net groups", - "events": "change", - "x": 1320, - "y": 300, - "wires": [[]] - }, - { - "id": "642ff403.1ed91c", - "type": "ui_text_input", - "z": "b771c342.49603", - "name": "sample_concentrated_sample_volume", - "label": "Concentrated sample volume (mL)", - "tooltip": "Volume extracted from the net codend (in mL)", - "group": "3e1ba03d.f01d8", - "order": 12, - "width": 10, - "height": 1, - "passthru": true, - "mode": "number", - "delay": "300", - "topic": "sample_concentrated_sample_volume", - "sendOnBlur": true, - "className": "", - "topicType": "str", - "x": 590, - "y": 440, - "wires": [["9f501f49.45645"]] - }, - { - "id": "e967b844.46aa48", - "type": "ui_text_input", - "z": "b771c342.49603", - "name": "sample_gear_net_opening", - "label": "Net opening dimension (mm)", - "tooltip": "Size of the net mouth opening (in mm)", - "group": "cf5d9f0e.d57e7", - "order": 1, - "width": 10, - "height": 1, - "passthru": true, - "mode": "number", - "delay": "300", - "topic": "sample_gear_net_opening", - "sendOnBlur": true, - "className": "", - "topicType": "str", - "x": 620, - "y": 320, - "wires": [["9f501f49.45645"]] - }, - { - "id": "c0ce5626.b6c5", - "type": "ui_toast", - "z": "b771c342.49603", - "position": "dialog", - "displayTime": "3", - "highlight": "", - "sendall": true, - "outputs": 1, - "ok": "OK", - "cancel": "", - "raw": false, - "topic": "", - "name": "", - "x": 1230, - "y": 620, - "wires": [[]] - }, - { - "id": "c33f1124.af6688", - "type": "ui_form", - "z": "b771c342.49603", - "name": "sample_location", - "label": "Sample Location", - "group": "cef1e703.bcf3c8", - "order": 1, - "width": 0, - "height": 0, - "options": [ - { - "label": "Latitude (36.574439°N or 36°57.4439'N)", - "value": "object_lat", - "type": "text", - "required": true, - "rows": null - }, - { - "label": "Longitude (110.42100°W or 110°4.2100'W)", - "value": "object_lon", - "type": "text", - "required": true, - "rows": null - }, - { - "label": "Date (YYYY-MM-DD, UTC)", - "value": "object_date", - "type": "text", - "required": true, - "rows": null - }, - { - "label": "Time (HH:MM(:SS), UTC 24h)", - "value": "object_time", - "type": "text", - "required": true, - "rows": null - } - ], - "formValue": { - "object_lat": "", - "object_lon": "", - "object_date": "", - "object_time": "" - }, - "payload": "", - "submit": "Validate", - "cancel": "Reset", - "topic": "sample_location", - "x": 660, - "y": 580, - "wires": [["14658615.47c862", "a9fb1f4b83fc25a7"]] - }, - { - "id": "358908cd.416ab", - "type": "ui_form", - "z": "b771c342.49603", - "name": "net_throw_location", - "label": "Net Throw Location", - "group": "cf5d9f0e.d57e7", - "order": 3, - "width": 0, - "height": 0, - "options": [ - { - "label": "Latitude (36.574439°N or 36°57.4439'N)", - "value": "object_lat", - "type": "text", - "required": true, - "rows": null - }, - { - "label": "Longitude (110.42100°W or 110°4.2100'W)", - "value": "object_lon", - "type": "text", - "required": true, - "rows": null - }, - { - "label": "Date (YYYY-MM-DD UTC)", - "value": "object_date", - "type": "text", - "required": true, - "rows": null - }, - { - "label": "Time (HH:MM, UTC 24h)", - "value": "object_time", - "type": "text", - "required": true, - "rows": null - } - ], - "formValue": { - "object_lat": "", - "object_lon": "", - "object_date": "", - "object_time": "" - }, - "payload": "", - "submit": "Validate", - "cancel": "", - "topic": "net_throw_location", - "topicType": "str", - "splitLayout": false, - "className": "", - "x": 650, - "y": 620, - "wires": [["14658615.47c862", "ad54b89540460d27"]] - }, - { - "id": "56d40584.eff4e4", - "type": "ui_form", - "z": "b771c342.49603", - "name": "net_retrieval_location", - "label": "Net Retrieval Location", - "group": "cf5d9f0e.d57e7", - "order": 4, - "width": 0, - "height": 0, - "options": [ - { - "label": "Latitude (36.574439°N or 36°57.4439'N)", - "value": "object_lat_end", - "type": "text", - "required": true, - "rows": null - }, - { - "label": "Longitude (110.42100°W or 110°4.2100'W)", - "value": "object_lon_end", - "type": "text", - "required": true, - "rows": null - }, - { - "label": "Date (YYYY-MM-DD UTC)", - "value": "object_date_end", - "type": "text", - "required": true, - "rows": null - }, - { - "label": "Time (HH:MM, UTC 24h)", - "value": "object_time_end", - "type": "text", - "required": true, - "rows": null - } - ], - "formValue": { - "object_lat_end": "", - "object_lon_end": "", - "object_date_end": "", - "object_time_end": "" - }, - "payload": "", - "submit": "Validate", - "cancel": "", - "topic": "net_retrieval_location", - "topicType": "str", - "splitLayout": false, - "x": 640, - "y": 660, - "wires": [["14658615.47c862", "c21bf0244e67e40a"]] - }, - { - "id": "14658615.47c862", - "type": "function", - "z": "b771c342.49603", - "name": "Validate Location / Timestamp", - "func": "// Code added here will be run once\n// whenever the node is started.\nfunction ConvertDDMMToDD(input) {\n // Input Format 36°57.4439'N, 110°4.2100'W\n // From https://stackoverflow.com/questions/1140189/converting-latitude-and-longitude-to-decimal-values\n if (!input.match(/\\d+°\\d+\\.*\\d*\\'[NSEW]/)){\n \treturn \"parsing error\"\n }\n var parts = input.split(/[^\\d.\\w]+/)\n if (parts.length != 3){\n \treturn \"parsing error\"\n }\n var dd = Number(parts[0]) + Number(parts[1])/60\n return dd.toFixed(6) + parts[2]\n}\n\nfunction ValidateCoordinates(input, lat){\n // Input Format 36.574439°N, 110.42100°W\n // Or 36°57.4439'N, 110°4.2100'W\n if (input.match(\"'\")){\n input = ConvertDDMMToDD(input)\n }\n \n var error = {}\n\n if (input.startsWith(\"parsing error\")){\n error.topic = \"Error with the \"\n error.payload = \"You need to respect the format example, 36.574439°N or 36°57.4439'N\"\n return [null, error]\n }\n \n var direction = input.match(/[NSEW]/)\n var position = input.match(/[\\+\\-\\d\\.]+/)\n \n if (direction === null){\n error.topic = \"Error with the \"\n error.payload = \"You need to explicitely enter N/S/E/W\"\n return [null, error]\n }\n \n // Test that position is only made of digits!\n if(/^[\\+\\-]/.test(position)){\n error.topic = \"Error with the \"\n error.payload = \"Use of +/- sign is inconsistent with N/S/E/W letter! Please only use N/S/E/W!\"\n return [null, error]\n }\n \n var dd = Number(position)\n if (lat){\n // Check latitude\n if (direction == \"S\" || direction == \"N\") {\n if (dd>90.0){\n error.topic = \"Error with the \"\n error.payload = \"Latitude is more than 90°\"\n return [null, error]\n }\n }\n if (direction == \"W\" || direction == \"E\") {\n error.topic = \"Error with the \"\n error.payload = \"This is not a Latitude!\"\n return [null, error]\n }\n }\n else{\n // Check longitude\n if (direction == \"W\" || direction == \"E\") {\n if (dd>180.0){\n error.topic = \"Error with the \"\n error.payload = \"Longitude is more than 180°\"\n return [null, error]\n }\n }\n if (direction == \"N\" || direction == \"S\") {\n error.topic = \"Error with the \"\n error.payload = \"This is not a Longitude!\"\n return [null, error]\n }\n }\n \n if (direction == \"S\" || direction == \"W\") {\n dd = dd * -1\n } // Don't do anything for N or E\n return [dd.toFixed(4), null]\n \n}\n\nfunction ValidateDate(input){\n // Input Format 2020-12-25\n var error = {};\n \n if (! /20\\d{2}-[0-1]\\d-[0-3]\\d/.test(input)){\n error.topic = \"Error with the date\";\n error.payload = \"The date should respect the ISO format YYYY-MM-DD\";\n return [null, error];\n }\n else {\n var date = input.match(/\\d+/g);\n if (!((2000 < date[0]) && (date[0] < 2100))){\n error.topic = \"Error with the date\"\n error.payload = \"The year should be between 2000 and 2100\"\n return [null, error]\n }\n else if (!((0 < date[1]) && (date[1] <= 12))){\n error.topic = \"Error with the date\"\n error.payload = \"The month should be between 01 and 12\"\n return [null, error]\n }\n else if (!((0 < date[2]) && (date[2] <= 31))){\n error.topic = \"Error with the date\"\n error.payload = \"The day should be between 01 and 31\"\n return [null, error]\n }\n }\n return [input.replace(/-/g, ''), null]\n}\n\nfunction ValidateTime(input){\n // Input Format 12:00\n var error = {}\n \n if (! /[0-2]?\\d:[0-5]\\d/.test(input)){\n error.topic = \"Error with the time\"\n error.payload = \"The date should respect the ISO format HH:MM\"\n return [null, error]\n }\n else {\n var time = input.match(/\\d+/g)\n \n if (!((0 <= time[0]) && (time[0] < 24))){\n error.topic = \"Error with the time\"\n error.payload = \"The hours should be 0 and 23.\"\n return [null, error]\n }\n else if (!((0 <= time[1]) && (time[1] < 60))){\n error.topic = \"Error with the time\"\n error.payload = \"The minutes should be between 0 and 59\"\n return [null, error]\n }\n }\n return [input.replace(/:/g, ''), null]\n}\n\n\nvar ret\nvar payload_for_form = {payload:{}}\nmsg.valid = false\n\nif (msg.topic == \"culture_timestamp\"){\n ret = ValidateDate(msg.payload.object_date)\n if (ret[1] !== null){\n msg.topic = ret[1].topic + \" of the sample\"\n msg.payload = ret[1].payload\n return [msg, null]\n }\n global.set(\"object_date\", ret[0])\n \n ret = ValidateTime(msg.payload.object_time)\n if (ret[1] !== null){\n msg.topic = ret[1].topic + \" of the sample\"\n msg.payload = ret[1].payload\n return [msg, null]\n }\n global.set(\"object_time\", ret[0])\n return [{topic: \"Date and time format valid!\", payload: \"All good!\", valid: true}, payload_for_form]\n}\nelse if (msg.topic == \"net_retrieval_location\"){\n ret = ValidateCoordinates(msg.payload.object_lat_end, true);\n if (ret[1] !== null){\n msg.topic = ret[1].topic + \" Latitude\"\n msg.payload = ret[1].payload\n return [msg, null]\n }\n global.set(\"object_lat_end\", ret[0])\n ret = ValidateCoordinates(msg.payload.object_lon_end, false)\n if (ret[1] !== null){\n msg.topic = ret[1].topic + \" Longitude\"\n msg.payload = ret[1].payload\n return [msg, null]\n }\n global.set(\"object_lon_end\", ret[0]);\n \n ret = ValidateDate(msg.payload.object_date_end)\n if (ret[1] !== null){\n msg.topic = ret[1].topic + \" of the sample retrieval\"\n msg.payload = ret[1].payload\n return [msg, null]\n }\n global.set(\"object_date_end\", ret[0])\n \n ret = ValidateTime(msg.payload.object_time_end)\n if (ret[1] !== null){\n msg.topic = ret[1].topic + \" of the sample retrieval\"\n msg.payload = ret[1].payload\n return [msg, null]\n }\n global.set(\"object_time_end\", ret[0])\n}\nelse{\n ret = ValidateCoordinates(msg.payload.object_lat, true);\n if (ret[1] !== null){\n msg.topic = ret[1].topic + \" Latitude\";\n msg.payload = ret[1].payload\n return [msg, null]\n }\n global.set(\"object_lat\", ret[0]);\n payload_for_form.payload[\"object_lat_end\"] = msg.payload.object_lat;\n \n ret = ValidateCoordinates(msg.payload.object_lon, false);\n if (ret[1] !== null){\n msg.topic = ret[1].topic + \" Longitude\"\n msg.payload = ret[1].payload\n return [msg, null]\n }\n global.set(\"object_lon\", ret[0])\n payload_for_form.payload[\"object_lon_end\"] = msg.payload.object_lon;\n\n ret = ValidateDate(msg.payload.object_date)\n if (ret[1] !== null){\n msg.topic = ret[1].topic + \" of the sample\"\n msg.payload = ret[1].payload\n return [msg, null]\n }\n global.set(\"object_date\", ret[0])\n payload_for_form.payload[\"object_date_end\"] = msg.payload.object_date;\n \n ret = ValidateTime(msg.payload.object_time)\n if (ret[1] !== null){\n msg.topic = ret[1].topic + \" of the sample\"\n msg.payload = ret[1].payload\n return [msg, null]\n }\n global.set(\"object_time\", ret[0])\n payload_for_form.payload[\"object_time_end\"] = msg.payload.object_time;\n}\nreturn [{topic: \"Coordinates valid!\", payload: \"All good!\", valid: true}, payload_for_form]\n", - "outputs": 2, - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 930, - "y": 620, - "wires": [["c0ce5626.b6c5", "9a18a4b4.178448"], ["56d40584.eff4e4"]], - "inputLabels": ["Location form data"], - "outputLabels": ["Message", "Location validated"] - }, - { - "id": "46eb1bf8.3dc5f4", - "type": "function", - "z": "b771c342.49603", - "name": "Net check", - "func": "var decknet = {}\nvar activation_msg = {}\n\nif (msg.payload.startsWith(\"net_decknet\")){\n decknet.enabled = true;\n}\nelse {\n decknet.enabled = false;\n}\n\nif (msg.payload.startsWith(\"net\")){\n activation_msg.payload = {\"group\":{\"show\":[\"Sample_Net_Metadata\"],\"hide\":[\"Sample_Sample_Location\",\"Sample_Culture_Date_and_Time\"]}};\n}\nelse if (msg.payload != \"culture\" && msg.payload != \"test\"){\n activation_msg.payload = {\"group\":{\"show\":[\"Sample_Sample_Location\"], \"hide\":[\"Sample_Net_Metadata\",\"Sample_Culture_Date_and_Time\"]}};\n}\n\n\nreturn [decknet, activation_msg];", - "outputs": 2, - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 1080, - "y": 240, - "wires": [ - ["516375fd.2ed61c", "470e382a.25691", "fbe32ac8.ff6a38"], - ["cbb123ab.fd3428"] - ], - "outputLabels": ["decknet activation", "group display control"] - }, - { - "id": "516375fd.2ed61c", - "type": "ui_text_input", - "z": "b771c342.49603", - "name": "sample_total_flowmeter_start", - "label": "Decknet flowmeter start", - "tooltip": "in L", - "group": "cf5d9f0e.d57e7", - "order": 6, - "width": 5, - "height": 1, - "passthru": false, - "mode": "text", - "delay": "300", - "topic": "sample_total_flowmeter_start", - "sendOnBlur": true, - "className": "", - "topicType": "str", - "x": 1340, - "y": 220, - "wires": [["e9bc112c.eb75f8"]] - }, - { - "id": "470e382a.25691", - "type": "ui_text_input", - "z": "b771c342.49603", - "name": "sample_total_flowmeter_end", - "label": "Decknet flowmeter end", - "tooltip": "in L", - "group": "cf5d9f0e.d57e7", - "order": 7, - "width": 5, - "height": 1, - "passthru": false, - "mode": "text", - "delay": "300", - "topic": "sample_total_flowmeter_end", - "sendOnBlur": true, - "className": "", - "topicType": "str", - "x": 1340, - "y": 260, - "wires": [["e9bc112c.eb75f8"]] - }, - { - "id": "fbe32ac8.ff6a38", - "type": "ui_template", - "z": "b771c342.49603", - "group": "cf5d9f0e.d57e7", - "name": "Decknet flowmeter read", - "order": 5, - "width": 10, - "height": 1, - "format": "
\n

Decknet flowmeter readings

\n

Those values are used to calculate sample_total_volume. Values are in L.

\n
\n", - "storeOutMessages": true, - "fwdInMessages": true, - "resendOnRefresh": true, - "templateScope": "local", - "x": 1330, - "y": 180, - "wires": [[]] - }, - { - "id": "f408a273.4fb538", - "type": "function", - "z": "b771c342.49603", - "name": "get sample_gear_net_opening", - "func": "if (msg.payload.sample_gear_net_opening === null){\n msg.payload = 0;\n global.set(\"sample_gear_net_opening\",msg.payload);\n}\nelse\n{\n msg.payload = msg.payload.sample_gear_net_opening;\n}\nreturn msg;", - "outputs": 1, - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 350, - "y": 320, - "wires": [["e967b844.46aa48"]] - }, - { - "id": "8dff1648.82e42", - "type": "function", - "z": "b771c342.49603", - "name": "get object_depth_max", - "func": "if (msg.payload.object_depth_max === null){\n msg.payload = 0;\n global.set(\"object_depth_max\",msg.payload);\n}\nelse\n{\n msg.payload = msg.payload.object_depth_max;\n}\nreturn msg;", - "outputs": 1, - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 320, - "y": 240, - "wires": [["9c7f7fc9.c8d3a"]] - }, - { - "id": "9f04c5ec.75f3d8", - "type": "function", - "z": "b771c342.49603", - "name": "get object_depth_min", - "func": "if (msg.payload.object_depth_min === null){\n msg.payload = 0;\n global.set(\"object_depth_min\",msg.payload);\n}\nelse\n{\n msg.payload = msg.payload.object_depth_min;\n}\nreturn msg;", - "outputs": 1, - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 320, - "y": 280, - "wires": [["317eeeb7.8d3042"]] - }, - { - "id": "9a18a4b4.178448", - "type": "function", - "z": "b771c342.49603", - "name": "calculate sample_total_volume", - "func": "\n/*object_lat = 33.95 \nobject_lon = 118.4 \nobject_lat_end = 40.6333 \nobject_lon_end = 73.78333\nsample_gear_net_opening = 40*/\n\n// Copyright 1997 Ed Williams. All rights reserved\n// Adapted by Romain Bazile - Ocean Trotter - 01-2021\n\ndecpl=4 // Dec places of minutes output\n\nellipse = {\"name\":\"WSG84\", \"a\":6378.137/1.852, \"invf\":298.257223563}\n\nfunction ComputeDistance(lat1, lon1, lat2, lon2){\n var d,crs12,crs21\n var argacos\n var a,invf\n \n // lat and lon in radian\n lat1=(Math.PI/180)*lat1\n lat2=(Math.PI/180)*lat2\n lon1=(Math.PI/180)*lon1\n lon2=(Math.PI/180)*lon2\n \n //alert(\"lat1=\" + lat1 + \"lon1=\" + lon1 +\"\\nlat2=\" +lat2+ \"lon2=\"+lon2)\n \n /* get distance conversion factor */\n dc=1.852 //km\n //alert(\"dc=\" +dc)\n \n //showProps(ellipse,\"ellipse\")\n \n // elliptic code\n d=crsdist_ell(lat1,-lon1,lat2,-lon2,ellipse) // ellipse uses East negative\n d=d*dc // go to physical units\n \n //alert(\"d=\"+d+\" crs12=\"+crs12+\" crs21=\"+crs21)\n return d\n}\n\nfunction crsdist(lat1,lon1,lat2,lon2){ // radian args\n /* compute course and distance (spherical) */\n if ((lat1+lat2===0) && (Math.abs(lon1-lon2)==Math.PI) && \n (Math.abs(lat1) != (Math.PI/180)*90)){\t\n \talert(\"Course between antipodal points is undefined\")\n }\n \n d = Math.acos(Math.sin(lat1)*Math.sin(lat2)+Math.cos(lat1)*Math.cos(lat2)*Math.cos(lon1-lon2))\n return d\n}\n\nfunction crsdist_ell(glat1,glon1,glat2,glon2,ellipse){\n // glat1 initial geodetic latitude in radians N positive \n // glon1 initial geodetic longitude in radians E positive \n // glat2 final geodetic latitude in radians N positive \n // glon2 final geodetic longitude in radians E positive \n a=ellipse.a\n f=1/ellipse.invf\n //alert(\"a=\"+a+\" f=\"+f)\n var r, tu1, tu2, cu1, su1, cu2, s1, b1, f1\n var x, sx, cx, sy, cy,y, sa, c2a, cz, e, c, d\n var EPS= 0.00000000005\n var faz, baz, s\n var iter=1\n var MAXITER=100\n if ((glat1+glat2===0) && (Math.abs(glon1-glon2)==Math.PI)){\n alert(\"Course and distance between antipodal points is undefined\")\n glat1=glat1+0.00001 // allow algorithm to complete\n }\n if (glat1==glat2 && (glon1==glon2 || Math.abs(Math.abs(glon1-glon2)-2*Math.PI) < EPS)){\n alert(\"Points 1 and 2 are identical- course undefined\")\n out=new MakeArray(0)\n out.d=0\n out.crs12=0\n out.crs21=Math.PI\n return out\n }\n r = 1 - f\n tu1 = r * Math.tan (glat1)\n tu2 = r * Math.tan (glat2)\n cu1 = 1 / Math.sqrt (1 + tu1 * tu1)\n su1 = cu1 * tu1\n cu2 = 1 / Math.sqrt (1 + tu2 * tu2)\n s1 = cu1 * cu2\n b1 = s1 * tu2\n f1 = b1 * tu1\n x = glon2 - glon1\n d = x + 1 // force one pass\n while ((Math.abs(d - x) > EPS) && (iter < MAXITER))\n {\n iter=iter+1\n sx = Math.sin (x)\n // alert(\"sx=\"+sx)\n cx = Math.cos (x)\n tu1 = cu2 * sx\n tu2 = b1 - su1 * cu2 * cx\n sy = Math.sqrt(tu1 * tu1 + tu2 * tu2)\n cy = s1 * cx + f1\n y = atan2 (sy, cy)\n sa = s1 * sx / sy\n c2a = 1 - sa * sa\n cz = f1 + f1\n if (c2a > 0)\n cz = cy - cz / c2a\n e = cz * cz * 2 - 1\n c = ((-3 * c2a + 4) * f + 4) * c2a * f / 16\n d = x\n x = ((e * cy * c + cz) * sy * c + y) * sa\n x = (1 - c) * x * f + glon2 - glon1\n }\n x = Math.sqrt ((1 / (r * r) - 1) * c2a + 1)\n x +=1\n x = (x - 2) / x\n c = 1 - x\n c = (x * x / 4 + 1) / c\n d = (0.375 * x * x - 1) * x\n x = e * cy\n d = ((((sy*sy*4-3)*(1-e-e)*cz*d/6-x)*d/4+cz)*sy*d+y)*c*a*r\n if (Math.abs(iter-MAXITER)0) && (y>=0)){ out= Math.atan(y/x)}\n if ((x >0) && (y<0)) { out= Math.atan(y/x)+2*Math.PI}\n if ((x===0) && (y>0)) { out= Math.PI/2}\n if ((x===0) && (y<0)) { out= 3*Math.PI/2} \n if ((x===0) && (y===0)) {\n alert(\"atan2(0,0) undefined\")\n out= 0\n } \n return out\n}\n\nfunction showProps(obj,objName){\n var result=\"\"\n for (var i in obj){\n result +=objName + \".\" + i + \" = \" + obj[i] + \"\\n\"\n }\n alert(result)\n}\n\n\nif (msg.valid){\n msg.topic=\"sample_total_volume\"\n \n var object_lat_end = global.get(\"object_lat_end\")\n var object_lon_end = global.get(\"object_lon_end\")\n var sample_sampling_gear = global.get(\"sample_sampling_gear\")\n \n if (sample_sampling_gear.startsWith(\"net\") && sample_sampling_gear != \"net_decknet\") {\n if (!(isNaN(object_lat_end) && isNaN(object_lon_end))){\n var object_lat = global.get(\"object_lat\")\n var object_lon = global.get(\"object_lon\")\n var sample_gear_net_opening = global.get(\"sample_gear_net_opening\");\n\n distance_km = ComputeDistance(object_lat, object_lon, object_lat_end, object_lon_end)\n\n sample_total_volume = distance_km*(Math.PI*(sample_gear_net_opening/2)*(sample_gear_net_opening/2)) // liters\n sample_total_volume = Math.round(sample_total_volume + Number.EPSILON)\n msg.payload = sample_total_volume\n return msg\n }\n }\n}", - "outputs": 1, - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 930, - "y": 760, - "wires": [["4f6afc5a.81e454"]] - }, - { - "id": "e73fd87d.d24e4", - "type": "function", - "z": "b771c342.49603", - "name": "get acq_minimum_mesh", - "func": "msg.payload = msg.payload.acq_minimum_mesh;\nreturn msg;", - "outputs": 1, - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 330, - "y": 360, - "wires": [["1aad56b31b5647ce"]] - }, - { - "id": "489c8e06.cc7d6", - "type": "function", - "z": "b771c342.49603", - "name": "get acq_maximum_mesh", - "func": "msg.payload = msg.payload.acq_maximum_mesh;\nreturn msg;", - "outputs": 1, - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 330, - "y": 400, - "wires": [["10eb31a2d7a6590c"]] - }, - { - "id": "58de1340.3cc354", - "type": "ui_text_input", - "z": "b771c342.49603", - "name": "sample_dilution_factor", - "label": "Concentration Factor", - "tooltip": "0.5 if diluted by two; 2 if concentrated by a factor 2", - "group": "3e1ba03d.f01d8", - "order": 13, - "width": 10, - "height": 1, - "passthru": true, - "mode": "number", - "delay": "300", - "topic": "sample_dilution_factor", - "sendOnBlur": true, - "className": "", - "topicType": "str", - "x": 640, - "y": 480, - "wires": [["9f501f49.45645"]] - }, - { - "id": "4f6afc5a.81e454", - "type": "ui_text_input", - "z": "b771c342.49603", - "name": "sample_total_volume", - "label": "Filtered volume (in L)", - "tooltip": "Calculated or hand filled", - "group": "3e1ba03d.f01d8", - "order": 11, - "width": 0, - "height": 0, - "passthru": true, - "mode": "text", - "delay": "300", - "topic": "sample_total_volume", - "sendOnBlur": true, - "className": "", - "topicType": "str", - "x": 1220, - "y": 760, - "wires": [["e1f2f6eb.fe1dd"]] - }, - { - "id": "e1f2f6eb.fe1dd", - "type": "function", - "z": "b771c342.49603", - "name": "set global", - "func": "global.set(msg.topic,msg.payload);", - "outputs": 1, - "noerr": 0, - "initialize": "", - "finalize": "", - "x": 1420, - "y": 760, - "wires": [[]] - }, - { - "id": "e9bc112c.eb75f8", - "type": "function", - "z": "b771c342.49603", - "name": "Calculate volume", - "func": "if (msg.topic == \"sample_total_flowmeter_start\"){\n context.set(\"sample_total_flowmeter_start\", msg.payload);\n}\nif (msg.topic == \"sample_total_flowmeter_end\"){\n context.set(\"sample_total_flowmeter_end\", msg.payload);\n}\n\nif (context.keys().length == 2){\n sample_total_volume = context.get(\"sample_total_flowmeter_end\") - context.get(\"sample_total_flowmeter_start\");\n msg.topic=\"sample_total_volume\"\n msg.payload=sample_total_volume\n return msg\n}\n", - "outputs": 1, - "noerr": 0, - "initialize": "", - "finalize": "", - "x": 1610, - "y": 240, - "wires": [["4f6afc5a.81e454"]] - }, - { - "id": "cdd4181922eecf11", - "type": "ui_text_input", - "z": "b771c342.49603", - "name": "sample_speed_through_water", - "label": "Speed Through Water (kts)", - "tooltip": "in knots", - "group": "cf5d9f0e.d57e7", - "order": 2, - "width": 10, - "height": 1, - "passthru": true, - "mode": "number", - "delay": "300", - "topic": "sample_speed_through_water", - "sendOnBlur": true, - "className": "", - "topicType": "str", - "x": 610, - "y": 520, - "wires": [["9f501f49.45645"]] - }, - { - "id": "1aad56b31b5647ce", - "type": "ui_text_input", - "z": "b771c342.49603", - "name": "acq_minimum_mesh", - "label": "Minimal fraction size (μm)", - "tooltip": "Net mesh pore size or minimal filtration mesh pore size", - "group": "3e1ba03d.f01d8", - "order": 7, - "width": 5, - "height": 1, - "passthru": true, - "mode": "number", - "delay": "300", - "topic": "acq_minimum_mesh", - "sendOnBlur": true, - "className": "", - "topicType": "str", - "x": 640, - "y": 360, - "wires": [["9f501f49.45645"]] - }, - { - "id": "10eb31a2d7a6590c", - "type": "ui_text_input", - "z": "b771c342.49603", - "name": "acq_maximum_mesh", - "label": "Maximal fraction size (μm)", - "tooltip": "Maximal filtration mesh pore size", - "group": "3e1ba03d.f01d8", - "order": 8, - "width": 5, - "height": 1, - "passthru": true, - "mode": "number", - "delay": "300", - "topic": "acq_maximum_mesh", - "sendOnBlur": true, - "className": "", - "topicType": "str", - "x": 640, - "y": 400, - "wires": [["9f501f49.45645"]] - }, - { - "id": "3ac7b631f5d8ef90", - "type": "function", - "z": "b771c342.49603", - "name": "Culture check", - "func": "var activation_msg = {}\nvar date_msg = {}\nvar timestamp=new Date().toISOString();\n\nif (msg.payload === \"culture\"){\n activation_msg.payload = {\"group\":{\"show\":[\"Sample_Culture_Date_and_Time\"],\"hide\":[\"Sample_Sample_Location\", \"Sample_Net_Metadata\"]}};\n global.set(\"object_lat\", \"-90.0000\")\n global.set(\"object_lon\", \"0.0000\")\n date_msg.payload = {\"object_date\": timestamp.split('T')[0],\n \"object_time\": timestamp.split('T')[1].split('.')[0]}\n return [activation_msg, date_msg];\n}\nelse if (msg.payload === \"test\"){\n activation_msg.payload = {\"group\":{\"hide\":[\"Sample_Culture_Date_and_Time\", \"Sample_Sample_Location\", \"Sample_Net_Metadata\"]}};\n global.set(\"object_lat\", \"-90.0000\")\n global.set(\"object_lon\", \"0.0000\")\n global.set(\"object_date\", timestamp.split('T')[0])\n global.set(\"object_time\", timestamp.split('T')[1].split('.')[0])\n return [activation_msg, null];\n}\nelse{\n return [null, null]\n}\n\n", - "outputs": 2, - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 1100, - "y": 320, - "wires": [["cbb123ab.fd3428"], ["05c6aff2afbd69cf"]], - "outputLabels": ["decknet activation", ""] - }, - { - "id": "05c6aff2afbd69cf", - "type": "ui_form", - "z": "b771c342.49603", - "name": "culture_timestamp", - "label": "Culture timestamp", - "group": "7bc0a4c416e4545c", - "order": 1, - "width": 0, - "height": 0, - "options": [ - { - "label": "Date (YYYY-MM-DD, UTC)", - "value": "object_date", - "type": "text", - "required": true, - "rows": null - }, - { - "label": "Time (HH:MM(:SS), UTC 24h)", - "value": "object_time", - "type": "text", - "required": true, - "rows": null - } - ], - "formValue": { - "object_date": "", - "object_time": "" - }, - "payload": "", - "submit": "Validate", - "cancel": "Reset", - "topic": "culture_timestamp", - "topicType": "str", - "splitLayout": false, - "className": "", - "x": 650, - "y": 700, - "wires": [["14658615.47c862", "f8044c35996322e6"]] - 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"reg": false, - "x": 400, - "y": 660, - "wires": [["56d40584.eff4e4"]] - }, - { - "id": "f8044c35996322e6", - "type": "change", - "z": "b771c342.49603", - "name": "Repopulate input fields", - "rules": [ - { - "t": "set", - "p": "payload", - "pt": "msg", - "to": "payload", - "tot": "msg" - } - ], - "action": "", - "property": "", - "from": "", - "to": "", - "reg": false, - "x": 400, - "y": 700, - "wires": [["05c6aff2afbd69cf"]] - }, - { - "id": "8b48a02877b7b6d6", - "type": "inject", - "z": "b771c342.49603", - "name": "", - "props": [ - { - "p": "payload" - } - ], - "repeat": "", - "crontab": "", - "once": true, - "onceDelay": 0.1, - "topic": "", - "payload": "1", - "payloadType": "num", - "x": 270, - "y": 480, - "wires": [["58de1340.3cc354"]] - }, - { - "id": "6a84252a.d52a0c", - "type": "ui_template", - "z": "bccd1f23.87219", - "group": "833bc5bb.217ba8", - "name": "Stream Pi Camera", - "order": 1, - "width": 18, - "height": 14, - "format": "
\n \"If\n
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"width": 4, - "height": 1, - "passthru": false, - "label": "", - "tooltip": "", - "color": "", - "bgcolor": "", - "icon": "fa-angle-double-up fa-3x", - "payload": "UP", - "payloadType": "str", - "topic": "actuator/focus", - "x": 550, - "y": 760, - "wires": [["65ad39d.b6d4d48"]] - }, - { - "id": "68962547.34a67c", - "type": "ui_text_input", - "z": "bccd1f23.87219", - "name": "pump_manual_volume", - "label": "Volume to pass (ml)", - "tooltip": "Tiny values are accepted down to 0.001mL", - "group": "707d9797.c8e798", - "order": 3, - "width": 2, - "height": 1, - "passthru": true, - "mode": "text", - "delay": "300", - "topic": "pump_manual_volume", - "sendOnBlur": true, - "className": "", - "topicType": "str", - "x": 600, - "y": 420, - "wires": [["dc48dc42.98d18"]] - }, - { - "id": "6c792043.b6ff9", - "type": "ui_ui_control", - "z": "bccd1f23.87219", - "name": "", - "events": "change", - "x": 560, - "y": 1140, - "wires": [[]] - }, - { - "id": "902429eb.ceacb8", - "type": "ui_toast", - "z": "bccd1f23.87219", - 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\n \n \n \n \n \n \n \n \n \n
\n

Sample

\n

id:

\n

project:\n

\n

ship:

\n

operator:\n

\n

sampling gear:\n

\n

concentrated volume:\n

\n

gear net opening:\n

\n

total volume filtered:\n

\n 		\n

Acquisition

\n

id:

\n

instrument:\n

\n

instrument id:\n

\n

camera:

\n

celltype: \n

\n

minimum mesh:\n

\n

maximum mesh:\n

\n

min esd: \n

\n

max esd: \n

\n

volume:

\n

magnification:\n

\n

fnumber objective:\n

\n

software: \n

\n
\n

Object

\n

latitude: \n

\n

longitude: \n

\n

latitude end:\n

\n

longitude end:\n

\n

date:

\n

time:

\n

date end:\n

\n

time end:\n

\n

depth min:\n

\n

depth max:\n

\n 		\n

Process

\n

pixel: \n

\n

id:

\n
\n
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"8dc3722c.06efa8", - "x": 610, - "y": 480, - "wires": [] - }, - { - "id": "bb62da8a.ebc328", - "type": "ui_switch", - "z": "baa1e3d9.cb29d", - "name": "Pump direction", - "label": "Pump direction", - "tooltip": "BACKWARD / FORWARD", - "group": "4322c187.e73e5", - "order": 9, - "width": 5, - "height": 1, - "passthru": true, - "decouple": "false", - "topic": "pump_direction", - "style": "", - "onvalue": "FORWARD", - "onvalueType": "str", - "onicon": "", - "oncolor": "", - "offvalue": "BACKWARD", - "offvalueType": "str", - "officon": "", - "offcolor": "", - "x": 420, - "y": 520, - "wires": [["6b2239f3.41fa3"]] - }, - { - "id": "52ea7d01.711034", - "type": "function", - "z": "baa1e3d9.cb29d", - "name": "Encapsulate config", - "func": "msg.payload = {\n\t\"action\": \"update_config\",\n\t\"config\": {\n \t\"description\": {\n \t\t\"sample_project\": \"Project's name\",\n \t\t\"sample_id\": \"Sample ID\",\n \t\t\"sample_uuid\": \"Sample UUID (Autogenerated)\",\n \t\t\"sample_ship\": \"Ship's name\",\n \t\t\"sample_operator\": \"Operator's name\",\n \t\t\"sample_sampling_gear\": \"Sampling gear used\",\n \t\t\"sample_concentrated_sample_volume\": \"Volume of concentrated sample, in mL\",\n \t\t\"sample_total_volume\": \"Total volume filtered by the net used, in L\",\n \t\t\"sample_dilution_factor\": \"Dilution factor of the sample, 0.5 if diluted by 2, 2 if concentrated by 2\",\n \t\t\"sample_speed_through_water\": \"Speed of the boat through water when sampling, in kts\",\n \t\t\"acq_id\": \"Acquisition ID\",\n \t\t\"acq_uuid\": \"Acquisition UUID (Autogenerated)\",\n \t\t\"acq_instrument\": \"Instrument type\",\n \t\t\"acq_instrument_id\": \"Instrument ID\",\n \t\t\"acq_celltype\": \"Flow cell dimension thickness, in µm\",\n \t\t\"acq_minimum_mesh\": \"Minimum filtration mesh size, in µm\",\n \t\t\"acq_maximum_mesh\": \"Maximum filtration mesh size, in µm\",\n \t\t\"acq_min_esd\": \"\",\n \t\t\"acq_max_esd\": \"\",\n \t\t\"acq_volume\": \"Pumped volume, in mL\",\n\t\t \"acq_imaged_volume\": \"Total imaged volume, in mL\",\n \t\t\"acq_magnification\": \"Optical magnification\",\n \t\t\"acq_fnumber_objective\": \"Focal length of the objective, in mm\",\n \t\t\"acq_camera_name\": \"Name of the camera used\",\n \t\t\"acq_nb_frame\": \"Number of picture taken\",\n \"acq_local_datetime\": \"Instrument local datetime\",\n \"acq_camera_resolution\": \"Resolution of the images\",\n \"acq_camera_iso\": \"ISO Number of the images\",\n \"acq_camera_shutter_speed\": \"Shutter speed of the images, in µs\",\n \"acq_software\": \"Software version number\",\n \t\t\"object_date\": \"Sample collection date (or beginning if using a net)\",\n \t\t\"object_time\": \"Sample collection time (or beginning if using a net)\",\n \t\t\"object_lat\": \"Sample collection latitude (or beginning if using a net)\",\n \t\t\"object_lon\": \"Sample collection longitude (or beginning if using a net)\",\n \t\t\"object_depth_min\": \"Sample collection minimal depth, in m\",\n \t\t\"object_depth_max\": \"Sample collection maximum depth, in m\",\n \t\t\"process_pixel\": \"Pixel imaging resolution, in µm/pixel\",\n \t\t\"process_datetime\": \"Segmentation timestamp\",\n \t\t\"process_id\": \"Segmentation ID\",\n \t\t\"process_uuid\": \"Segmentation UUID (Autogenerated)\",\n \t\t\"process_source\": \"Code source link of the executed code\",\n \t\t\"process_commit\": \"Version reference of the executed code\",\n \t\t\"sample_gear_net_opening\": \"Sample mouth opening dimension, in mm\",\n \t\t\"object_date_end\": \"Sample end collection date when using a net\",\n \t\t\"object_time_end\": \"Sample end collection time when using a net\",\n \t\t\"object_lat_end\": \"Sample end collection latitude when using a net\",\n \t\t\"object_lon_end\": \"Sample end collection longitude when using a net\",\n \t},\n\t\t\"sample_project\": global.get(\"sample_project\"),\n\t\t\"sample_id\": global.get(\"sample_project\") + \"_\" + global.get(\"sample_id\"),\n\t\t\"sample_ship\": global.get(\"sample_ship\"),\n\t\t\"sample_operator\": global.get(\"sample_operator\"),\n\t\t\"sample_sampling_gear\": global.get(\"sample_sampling_gear\"),\n\t\t\"sample_concentrated_sample_volume\": global.get(\"sample_concentrated_sample_volume\"),\n\t\t\"sample_total_volume\": global.get(\"sample_total_volume\"),\n\t\t\"sample_dilution_factor\": global.get(\"sample_dilution_factor\"),\n\t\t\"sample_speed_through_water\": global.get(\"sample_speed_through_water\"),\n\n\t\t\"acq_id\": global.get(\"sample_project\") + \"_\" + global.get(\"sample_id\")+ \"_\" + global.get(\"acq_id\"),\n\t\t\"acq_instrument\": global.get(\"acq_instrument\"),\n\t\t\"acq_instrument_id\": global.get(\"acq_instrument_id\"),\n\t\t\"acq_celltype\": global.get(\"acq_celltype\"),\n\t\t\"acq_minimum_mesh\": global.get(\"acq_minimum_mesh\"),\n\t\t\"acq_maximum_mesh\": global.get(\"acq_maximum_mesh\"),\n\t\t\"acq_min_esd\": global.get(\"acq_min_esd\"),\n\t\t\"acq_max_esd\": global.get(\"acq_max_esd\"),\n\t\t\"acq_volume\": global.get(\"acq_volume\"),\n\t\t\"acq_imaged_volume\": global.get(\"acq_imaged_volume\"),\n\t\t\"acq_magnification\": global.get(\"acq_magnification\"),\n\t\t\"acq_fnumber_objective\": global.get(\"acq_fnumber_objective\"),\n\t\t\"acq_camera\": global.get(\"acq_camera\"),\n\t\t\"acq_nb_frame\": global.get(\"nb_frame\"),\n\t\t\"acq_software\": global.get(\"acq_software\"),\n\n\t\t\"object_date\": global.get(\"object_date\"),\n\t\t\"object_time\": global.get(\"object_time\"),\n\t\t\"object_lat\": global.get(\"object_lat\"),\n\t\t\"object_lon\": global.get(\"object_lon\"),\n\t\t\"object_depth_min\": global.get(\"object_depth_min\"),\n\t\t\"object_depth_max\": global.get(\"object_depth_max\"),\n\n\t\t\"process_pixel\": global.get(\"process_pixel\"),\n\t\t\"process_source\": global.get(\"process_source\"),\n\t\t\"process_commit\": global.get(\"process_commit\")\n\t}\n};\n\nif (msg.payload.config.sample_sampling_gear.startsWith(\"net\")) {\n\tmsg.payload.config[\"sample_gear_net_opening\"] = global.get(\"sample_gear_net_opening\")\n\tmsg.payload.config[\"object_date_end\"] = global.get(\"object_date_end\")\n\tmsg.payload.config[\"object_time_end\"] = global.get(\"object_time_end\")\n\tmsg.payload.config[\"object_lat_end\"] = global.get(\"object_lat_end\")\n\tmsg.payload.config[\"object_lon_end\"] = global.get(\"object_lon_end\")\n}\n\nif ( msg.send == true){\n\treturn [msg, msg]\n}\nelse{\n\treturn [msg, null]\n}", - "outputs": 2, - "timeout": "", - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 870, - "y": 400, - "wires": [["29be525e.0c87fe"], ["c3e50240.82aa58"]] - }, - { - "id": "40c12463.a1f84c", - "type": "delay", - "z": "baa1e3d9.cb29d", - "name": "", - "pauseType": "delay", - "timeout": "1", - "timeoutUnits": "seconds", - "rate": "1", - "nbRateUnits": "1", - "rateUnits": "second", - "randomFirst": "1", - "randomLast": "5", - "randomUnits": "seconds", - "drop": false, - "outputs": 1, - "x": 900, - "y": 440, - "wires": [["c3e50240.82aa58"]] - }, - { - "id": "4d1b02cb.83b51c", - "type": "ui_button", - "z": "baa1e3d9.cb29d", - "name": "", - "group": "4322c187.e73e5", - "order": 10, - "width": 5, - "height": 1, - "passthru": false, - "label": "Update config", - "tooltip": "", - "color": "", - "bgcolor": "", - "className": "", - "icon": "save", - "payload": "", - "payloadType": "str", - "topic": "imager/image", - "topicType": "str", - "x": 420, - "y": 400, - "wires": [["52ea7d01.711034"]] - }, - { - "id": "5921d0d0.a3d568", - "type": "subflow:1c24ad9c.bebec2", - "z": "baa1e3d9.cb29d", - "name": "", - "env": [], - "x": 110, - "y": 180, - "wires": [ - [ - "f3658d30.b8448", - "de2c90cf.b73b08", - "4be09c97f86897d9", - "f573206abefa9518", - "f948151ab4031df4" - ] - ] - }, - { - "id": "f3658d30.b8448", - "type": "function", - "z": "baa1e3d9.cb29d", - "name": "get acq_id", - "func": "msg.payload = msg.payload.acq_id;\nreturn msg;", - "outputs": 1, - "timeout": "", - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 330, - "y": 180, - "wires": [["6b34c456.83178c"]] - }, - { - "id": "de2c90cf.b73b08", - "type": "function", - "z": "baa1e3d9.cb29d", - "name": "get acq_celltype", - "func": "msg.topic = 'acq_celltype';\nmsg.payload = msg.payload.acq_celltype;\nreturn msg;", - "outputs": 1, - "timeout": "", - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 340, - "y": 100, - "wires": [["cc0ca68b.4263a8"]] - }, - { - "id": "b402f719.55bc98", - "type": "inject", - "z": "baa1e3d9.cb29d", - "name": "Default: FORWARD", - "props": [ - { - "p": "payload" - }, - { - "p": "topic", - "vt": "str" - } - ], - "repeat": "", - "crontab": "", - "once": true, - "onceDelay": 0.1, - "topic": "pump_direction", - "payload": "FORWARD", - "payloadType": "str", - "x": 180, - "y": 520, - "wires": [["bb62da8a.ebc328"]] - }, - { - "id": "6b2239f3.41fa3", - "type": "function", - "z": "baa1e3d9.cb29d", - "name": "set global", - "func": "global.set(msg.topic, msg.payload);", - "outputs": 1, - "noerr": 0, - "initialize": "", - "finalize": "", - "x": 620, - "y": 520, - "wires": [[]] - }, - { - "id": "51b4d0df.d70a88", - "type": "ui_text_input", - "z": "baa1e3d9.cb29d", - "name": "nb_frame", - "label": "Number of images to acquire", - "tooltip": "", - "group": "4322c187.e73e5", - "order": 2, - "width": 5, - "height": 1, - "passthru": true, - "mode": "number", - "delay": 300, - "topic": "nb_frame", - "sendOnBlur": true, - "className": "", - "topicType": "str", - "x": 680, - "y": 220, - "wires": [["fb887036.12429", "67091ac0.8f9f6c", "99b11fe4.2795d"]] - }, - { - "id": "999065ca.27edb8", - "type": "switch", - "z": "baa1e3d9.cb29d", - "name": "topic filter", - "property": "topic", - "propertyType": "msg", - "rules": [ - { - "t": "eq", - "v": "status/pump", - "vt": "str" - }, - { - "t": "eq", - "v": "status/focus", - "vt": "str" - }, - { - "t": "eq", - "v": "status/light", - "vt": "str" - }, - { - "t": "eq", - "v": "status/imager", - "vt": "str" - } - ], - "checkall": "true", - "repair": false, - "outputs": 4, - "x": 320, - "y": 800, - "wires": [ - ["a46a1e7f.88a92", "6742014e.1bb238"], - ["c516d9ea.f7f6e", "6742014e.1bb238"], - ["6742014e.1bb238"], - ["307c851e.fb0f7a", "2b9d6988.d84836"] - ] - }, - { - "id": "2b009bd7.c07004", - "type": "ui_text", - "z": "baa1e3d9.cb29d", - "group": "70de8209.68416c", - "order": 3, - "width": 10, - "height": 2, - "name": "imager", - "label": "Imager status:", - "format": "{{msg.payload.status}}", - "layout": "col-center", - "x": 770, - "y": 740, - "wires": [] - }, - { - "id": "c516d9ea.f7f6e", - "type": "ui_text", - "z": "baa1e3d9.cb29d", - "group": "70de8209.68416c", - "order": 1, - "width": 5, - "height": 1, - "name": "focus", - "label": "Focus status:", - "format": "{{msg.payload.status}}", - "layout": "col-center", - "x": 770, - "y": 700, - "wires": [] - }, - { - "id": "a46a1e7f.88a92", - "type": "ui_text", - "z": "baa1e3d9.cb29d", - "group": "70de8209.68416c", - "order": 2, - "width": 5, - "height": 1, - "name": "pump", - "label": "Pump status:", - "format": "{{msg.payload.status}}", - "layout": "col-center", - "x": 770, - "y": 660, - "wires": [] - }, - { - "id": "bb628f8d.98f108", - "type": "link in", - "z": "baa1e3d9.cb29d", - "name": "Status for fluidic module", - "links": ["58f2e0f.4e8b12"], - "x": 175, - "y": 800, - "wires": [["999065ca.27edb8"]] - }, - { - "id": "307c851e.fb0f7a", - "type": "switch", - "z": "baa1e3d9.cb29d", - "name": "Imaging state", - "property": "payload", - "propertyType": "msg", - "rules": [ - { - "t": "jsonata_exp", - "v": "$contains(msg.payload.status, \"jpg\")\t", - "vt": "jsonata" - }, - { - "t": "else" - } - ], - "checkall": "false", - "repair": false, - "outputs": 2, - "x": 540, - "y": 880, - "wires": [["db8e3dde.44efb8"], ["6742014e.1bb238"]] - }, - { - "id": "db8e3dde.44efb8", - "type": "function", - "z": "baa1e3d9.cb29d", - "name": "img_counter", - "func": "img_counter=flow.get('img_counter')\nif (img_counter === undefined || img_counter === \"\"){\n img_counter = 0\n}\nimg_counter=img_counter+1\nflow.set('img_counter',img_counter)\nmsg.payload = img_counter\nmsg.payload = (100 * img_counter/global.get('nb_frame')).toFixed(2)\nreturn msg;", - "outputs": 1, - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 770, - "y": 860, - "wires": [["1a2e721a.f5e876"]] - }, - { - "id": "59164d65.e7993c", - "type": "ui_toast", - "z": "baa1e3d9.cb29d", - "position": "top right", - "displayTime": "5", - "highlight": "", - "sendall": true, - "outputs": 0, - "ok": "OK", - "cancel": "", - "raw": false, - "topic": "", - "name": "", - "x": 1270, - "y": 900, - "wires": [] - }, - { - "id": "8c7348aa.1962e8", - "type": "template", - "z": "baa1e3d9.cb29d", - "name": "Create sentence", - "field": "payload", - "fieldType": "msg", - "format": "handlebars", - "syntax": "mustache", - "template": "The {{topic}} is {{payload.status}}", - "output": "str", - "x": 1050, - "y": 900, - "wires": [["59164d65.e7993c"]] - }, - { - "id": "6742014e.1bb238", - "type": "change", - "z": "baa1e3d9.cb29d", - "name": "Remove high-level topic", - "rules": [ - { - "t": "change", - "p": "topic", - "pt": "msg", - "from": "status/", - "fromt": "str", + [ + "bb0a8725.a1849" + ] + ] + }, + { + "id": "0f16258953fae292", + "type": "file in", + "z": "b7861ce703215a01", + "name": "", + "filename": "/home/pi/PlanktoScope/hardware.json", + "filenameType": "str", + "format": "utf8", + "chunk": false, + "sendError": false, + "encoding": "none", + "allProps": false, + "x": 250, + "y": 40, + "wires": [ + [ + "81c516291ab19acd" + ] + ], + "info": "# PlanktoScope Help\nThis Node will read the content of the file named **config.txt** containing all the input placeholders.\n" + }, + { + "id": "81c516291ab19acd", + "type": "json", + "z": "b7861ce703215a01", + "name": "Parse JSON", + "property": "payload", + "action": "", + "pretty": false, + "x": 510, + "y": 40, + "wires": [ + [ + "d0fbcd200cd09981" + ] + ] + }, + { + "id": "d0fbcd200cd09981", + "type": "change", + "z": "b7861ce703215a01", + "name": "", + "rules": [ + { + "t": "set", + "p": "hardware_conf", + "pt": "global", + "to": "payload", + "tot": "msg" + } + ], + "action": "", + "property": "", + "from": "", "to": "", - "tot": "str" - } - ], - "action": "", - "property": "", - "from": "", - "to": "", - "reg": false, - "x": 810, - "y": 900, - "wires": [["8c7348aa.1962e8"]] - }, - { - "id": "1a2e721a.f5e876", - "type": "ui_gauge", - "z": "baa1e3d9.cb29d", - "name": "progress donut", - "group": "b5d61bc7.54fe48", - "order": 3, - "width": 6, - "height": 3, - "gtype": "donut", - "title": "", - "label": "%", - "format": "{{value}}", - "min": 0, - "max": "100", - "colors": ["#ffa83f", "#e6ff02", "#00dfe9"], - "seg1": "50", - "seg2": "75", - "x": 1260, - "y": 860, - "wires": [] - }, - { - "id": "9bd72495.a8a098", - "type": "ui_text", - "z": "baa1e3d9.cb29d", - "group": "4322c187.e73e5", - "order": 5, - "width": 5, - "height": 1, - "name": "Total imaged volume", - "label": "Total imaged volume", - "format": "{{msg.payload}}", - "layout": "col-center", - "x": 1200, - "y": 100, - "wires": [] - }, - { - "id": "99b11fe4.2795d", - "type": "function", - "z": "baa1e3d9.cb29d", - "name": "imaged volume calc", - "func": "camera = global.get(\"acq_camera\");\ncell = global.get(\"acq_celltype\");\nnb_frame = global.get(\"nb_frame\");\nprocess_pixel = global.get(\"process_pixel\");\n\nvar volume = 0\nif (camera == \"HQ Camera\"){\n volume = nb_frame * (process_pixel*4056*process_pixel*3040*cell/1000000000) / 1000;\n}\nelse if (camera == \"Camera v2.1\"){\n volume = nb_frame * (process_pixel*3280*process_pixel*2464*cell/1000000000) / 1000;\n}\nelse{\n msg.payload = \"The camera is not known to this system\";\n return msg;\n}\n\nglobal.set(\"acq_imaged_volume\", volume.toFixed(4))\n\nmsg.payload = volume.toFixed(2) + \" mL\"\nreturn msg;", - "outputs": 1, - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 960, - "y": 100, - "wires": [["9bd72495.a8a098"]], - "info": "### Focusing\n##### focus.py `nb_step` `orientation`\n\n- `nb_step` : **integer** (from 1 to 100000) - number of step to perform by the stage (about 31um/step)\n- `orientation` : **string** - orientation of the focus either `up` or `down`\n\nExample:\n\n python3.7 $HOME/PlanktoScope/scripts/focus.py 650 up\n" - }, - { - "id": "8e16aa2f.e40398", - "type": "ui_text", - "z": "baa1e3d9.cb29d", - "group": "4322c187.e73e5", - "order": 7, - "width": 5, - "height": 1, - "name": "Total pumped volume", - "label": "Total pumped volume", - "format": "{{msg.payload}} mL", - "layout": "col-center", - "x": 1200, - "y": 260, - "wires": [] - }, - { - "id": "67091ac0.8f9f6c", - "type": "function", - "z": "baa1e3d9.cb29d", - "name": "acq_volume calc", - "func": "var imaging_pump_volume = global.get(\"imaging_pump_volume\");\nvar nb_frame = global.get(\"nb_frame\");\nvar acq_volume = 0\n\nacq_volume = (Number(nb_frame)*Number(imaging_pump_volume)).toFixed(2)\nglobal.set(\"acq_volume\", acq_volume)\n\nmsg.payload = acq_volume\nreturn msg;", - "outputs": 1, - "noerr": 0, - "initialize": "", - "finalize": "", - "x": 950, - "y": 260, - "wires": [["8e16aa2f.e40398"]], - "info": "### Focusing\n##### focus.py `nb_step` `orientation`\n\n- `nb_step` : **integer** (from 1 to 100000) - number of step to perform by the stage (about 31um/step)\n- `orientation` : **string** - orientation of the focus either `up` or `down`\n\nExample:\n\n python3.7 $HOME/PlanktoScope/scripts/focus.py 650 up\n" - }, - { - "id": "2b9d6988.d84836", - "type": "switch", - "z": "baa1e3d9.cb29d", - "name": "", - "property": "payload", - "propertyType": "msg", - "rules": [ - { - "t": "hask", - "v": "status", - "vt": "str" - }, - { - "t": "hask", - "v": "camera_name", - "vt": "str" - } - ], - "checkall": "true", - "repair": false, - "outputs": 2, - "x": 650, - "y": 760, - "wires": [["2b009bd7.c07004"], ["3bbb756a.84190a"]] - }, - { - "id": "3bbb756a.84190a", - "type": "function", - "z": "baa1e3d9.cb29d", - "name": "set camera name", - "func": "global.set(\"acq_camera\", msg.payload.camera_name);\n\nmsg.payload = msg.payload.camera_name;\n\nreturn msg;", - "outputs": 1, - "noerr": 0, - "initialize": "", - "finalize": "", - "x": 810, - "y": 780, - "wires": [["559a8085.1d6b9"]] - }, - { - "id": "559a8085.1d6b9", - "type": "link out", - "z": "baa1e3d9.cb29d", - "name": "Camera Name", - "links": ["30067f35.532f2", "572a6daa.6004c4"], - "x": 965, - "y": 780, - "wires": [] - }, - { - "id": "49ea1123.ee1768", - "type": "ui_numeric", - "z": "baa1e3d9.cb29d", - "name": "sleep_before", - "label": "Delay to stabilize image (s)", - "tooltip": "Happens before every capture", - "group": "4322c187.e73e5", - "order": 4, - "width": 5, - "height": 1, - "wrap": false, - "passthru": true, - "topic": "sleep_before", - "topicType": "str", - "format": "{{value}}", - "min": "0.1", - "max": "5", - "step": "0.1", - "className": 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Capture progress

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You can choose here in which folder(s) you want the segmentation script to run. A few details though:\n
The segmentation is run recursively in all folders. So if you select a top level folder, the segmentation will be run in all subfolders.\n
Also, you will be able to chose wether for force the segmentation for folders in which it has run already.
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\n Latest object segmented:
\n \"If\n
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\n\n
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\n The PlanktoScope software application consists of three components: a Node-RED dashboard which provides the user interface you're using; a Hardware Controller\n which executes commands sent from the Node-RED dashboard for hardware control and image acquisition; and a Segmenter which processes an acquired dataset of\n images and isolates objects from those images. Each component has its own independent log of messages, managed separately from the logs for the other components.\n

\n

\n All three components have live-updating logs which you can monitor. Additionally, the Hardware Controller and the Segmenter also save all of their log messages\n to files which you can browse and download. Those software components create a new log file each time they start, and the name of the log file includes the time\n in the PlanktoScope's clock when the software component started. However, if your PlanktoScope's clock is usually wrong, it makes the log files difficult to navigate.\n This will be fixed in a future version of the software.\n

\n

\n If you need to share your logs with other people (e.g. on Slack or GitHub), you should open the \"Downloadable Logs\" links, and then you can select one file or multiple\n log files for downloading as a zip archive.\n

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"name": "set global", - "func": "global.set(\"acq_instrument_id\",msg.payload);\n", - "outputs": 1, - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 580, - "y": 720, - "wires": [[]] - }, - { - "id": "e2f39a35.f57298", - "type": "subflow:1c24ad9c.bebec2", - "z": "1371dec5.76e671", - "name": "", - "env": [], - "x": 130, - "y": 640, - "wires": [["9b64f397101c2762"]] - }, - { - "id": "3e64877a.9684b", - "type": "function", - "z": "1371dec5.76e671", - "name": "set global", - "func": "global.set(\"acq_software\", \"PlanktoScope \" + msg.payload);\n", - "outputs": 1, - "timeout": "", - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 820, - "y": 520, - "wires": [[]] - }, - { - "id": "bdc6718a.dd5d48", - "type": "ui_text", - "z": "1371dec5.76e671", - "group": "ce9e278.781eed8", - "order": 2, - "width": 0, - "height": 0, - "name": "", - "label": "Instrument Type", - "format": "{{msg.payload}}", - "layout": "row-spread", - "className": "", - "style": false, - "font": "", - "fontSize": "", - "color": "#000000", - "x": 600, - "y": 640, - "wires": [] - }, - { - "id": "a400a97e.e333a8", - "type": "ui_text", - "z": "1371dec5.76e671", - "group": "ce9e278.781eed8", - "order": 1, - "width": 0, - "height": 0, - "name": "", - "label": "Instrument Name", - "format": "{{msg.payload}}", - "layout": "row-spread", - "x": 610, - "y": 680, - "wires": [] - }, - { - "id": "8343fa69.49339", - "type": "ui_text", - "z": "1371dec5.76e671", - "group": "ce9e278.781eed8", - "order": 3, - "width": 0, - "height": 0, - "name": "", - "label": "Software Version", - "format": "{{msg.payload}}", - "layout": "row-spread", - "className": "", - "style": false, - "font": "", - "fontSize": "", - "color": "#000000", - "x": 850, - "y": 560, - "wires": [] - }, - { - "id": "f783aefd.c3bfd8", - "type": "ui_text", - "z": "1371dec5.76e671", - "group": "ce9e278.781eed8", - "order": 4, - "width": 0, - "height": 0, - "name": "", - "label": "Camera Name", - "format": "{{msg.payload}}", - "layout": "row-spread", - "x": 600, - "y": 760, - "wires": [] - }, - { - "id": "30067f35.532f2", - "type": "link in", - "z": "1371dec5.76e671", - "name": "Camera Name", - "links": ["559a8085.1d6b9"], - "x": 155, - "y": 760, - "wires": [["f783aefd.c3bfd8"]] - }, - { - "id": "eaf74a43.fa27d", - "type": "switch", - "z": "1371dec5.76e671", - "name": "if disk > 90%", - "property": "payload", - "propertyType": "msg", - "rules": [ - { - "t": "gte", - "v": "90", - "vt": "num" - } - ], - "checkall": "true", - "repair": false, - "outputs": 1, - "x": 590, - "y": 120, - "wires": [["6d09f428.930bcc"]] - }, - { - "id": "46d5e78b.15f998", - "type": "ui_toast", - "z": "1371dec5.76e671", - "position": "dialog", - "displayTime": "10", - "highlight": "", - "sendall": true, - "outputs": 1, - "ok": "OK", - "cancel": "", - "raw": false, - "topic": "", - "name": "", - "x": 1090, - "y": 120, - "wires": [[]] - }, - { - "id": "24df077a.cb252", - "type": "change", - "z": "1371dec5.76e671", - "name": "full disk msg", - "rules": [ - { - "t": "set", - "p": "payload", - "pt": "msg", - "to": "\"Your drive has reached 90% capacity, you should do a backup to an external drive and a purge.\"", - "tot": "str" - } - ], - "action": "", - "property": "", - "from": "", - "to": "", - "reg": false, - "x": 930, - "y": 120, - "wires": [["46d5e78b.15f998"]] - }, - { - "id": "6d09f428.930bcc", - "type": "delay", - "z": "1371dec5.76e671", - "name": "", - "pauseType": "rate", - "timeout": "5", - "timeoutUnits": "seconds", - "rate": "1", - "nbRateUnits": "5", - "rateUnits": "minute", - "randomFirst": "1", - "randomLast": "5", - "randomUnits": "seconds", - "drop": true, - "allowrate": false, - "outputs": 1, - "x": 760, - "y": 120, - "wires": [["24df077a.cb252"]] - }, - { - "id": "5883e629f5d546ed", - "type": "file in", - "z": "1371dec5.76e671", - "name": "Get machine name", - "filename": "/run/machine-name", - "filenameType": "str", - "format": "utf8", - "chunk": false, - "sendError": false, - "encoding": "none", - "allProps": false, - "x": 350, - "y": 700, - "wires": [["a400a97e.e333a8", "4828d2f4.7c712c"]] - }, - { - "id": "9b64f397101c2762", - "type": "change", - "z": "1371dec5.76e671", - "name": "Get acq_instrument", - "rules": [ - { - "t": "set", - "p": "payload", - "pt": "msg", - "to": "payload.acq_instrument", - "tot": "msg" - }, - { - "t": "set", - "p": "topic", - "pt": "msg", - "to": "acq_instrument", - "tot": "str" - } - ], - "action": "", - "property": "", - "from": "", - "to": "", - "reg": false, - "x": 350, - "y": 640, - "wires": [["bdc6718a.dd5d48"]] - }, - { - "id": "99725e1437cc390b", - "type": "file in", - "z": "1371dec5.76e671", - "name": "Versioning File", - "filename": "/usr/share/planktoscope/installer-versioning.yml", - "filenameType": "str", - "format": "utf8", - "chunk": false, - "sendError": false, - "encoding": "none", - "allProps": false, - "x": 240, - "y": 540, - "wires": [["f4e21e28bd903f6d"]], - "info": "# PlanktoScope Help\nThis Node will read the content of the file named **config.txt** containing all the input placeholders.\n" - }, - { - "id": "6a0fa173874c3ddd", - "type": "inject", - "z": "1371dec5.76e671", - "name": "once", - "props": [ - { - "p": "payload" - } - ], - "repeat": "", - "crontab": "", - "once": true, - "onceDelay": "", - "topic": "", - "payload": "start", - "payloadType": "str", - "x": 90, - "y": 540, - "wires": [["99725e1437cc390b"]] - }, - { - "id": "f4e21e28bd903f6d", - "type": "yaml", - "z": "1371dec5.76e671", - "property": "payload", - "name": "", - "x": 390, - "y": 540, - "wires": [["d6264e3e29b68c6e", "aa84b912c996c69e", "fba22dc2c16b3ec8"]] - }, - { - "id": "d6264e3e29b68c6e", - "type": "change", - "z": "1371dec5.76e671", - "name": "Get version", - "rules": [ - { - "t": "set", - "p": "payload", - "pt": "msg", - "to": "payload.version", - "tot": "msg" - } - ], - "action": "", - "property": "", - "from": "", - "to": "", - "reg": false, - "x": 590, - "y": 540, - "wires": [["3e64877a.9684b", "8343fa69.49339"]] - }, - { - "id": "aa84b912c996c69e", - "type": "change", - "z": "1371dec5.76e671", - "name": "Get repo", - "rules": [ - { - "t": "set", - "p": "payload", - "pt": "msg", - "to": "payload.repo", - "tot": "msg" - } - ], - "action": "", - "property": "", - "from": "", - "to": "", - "reg": false, - "x": 580, - "y": 500, - "wires": [["fd55e7a43d9bdbbb"]] - }, - { - "id": "fd55e7a43d9bdbbb", - "type": "function", - "z": "1371dec5.76e671", - "name": "set global", - "func": "global.set(\"process_source\", msg.payload);\n", - "outputs": 1, - "timeout": "", - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 820, - "y": 480, - "wires": [[]] - }, - { - "id": "fba22dc2c16b3ec8", - "type": "change", - "z": "1371dec5.76e671", - "name": "Get commit", - "rules": [ - { - "t": "set", - "p": "payload", - "pt": "msg", - "to": "payload.commit", - "tot": "msg" - } - ], - "action": "", - "property": "", - "from": "", - "to": "", - "reg": false, - "x": 590, - "y": 580, - "wires": [["2ddc75a4ac38a17f"]] - }, - { - "id": "2ddc75a4ac38a17f", - "type": "function", - "z": "1371dec5.76e671", - "name": "set global", - "func": "global.set(\"process_commit\", msg.payload);\n", - "outputs": 1, - "timeout": "", - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 820, - "y": 600, - "wires": [[]] - }, - { - "id": "797675a937dc1629", - "type": "ui_template", - "z": "1371dec5.76e671", - "group": "3da7da8f.179606", - "name": "Metrics panel", - "order": 2, - "width": "0", - "height": "0", - "format": "
\n

\n The instrument's system time is different from your web browser's time by {{drift}}.\n As a result, timestamps in your datasets will be incorrect.\n Additionally, system metrics will not be recorded or shown correctly.\n Additionally, you will see incorrectly-aligned graphs in the metrics below.\n

\n

Please change the instrument's system time or your web browser's time to accurate values.

\n

\n \n

\n
\n\n
\n

Loading system metrics, please wait...

\n
\n\n
\n \n
\n\n\n", - "storeOutMessages": true, - "fwdInMessages": true, - "resendOnRefresh": false, - "templateScope": "local", - "className": "", - "x": 330, - "y": 280, - "wires": [[]] - }, - { - "id": "aa2e4cd182dbc776", - "type": "function", - "z": "1371dec5.76e671", - "name": "Get system time", - "func": "var date = new Date();\ndate.setSeconds(0, 0);\nmsg.payload = (\n date.toISOString().replace('T', ' ').replace(/:\\d+\\.\\d+Z/,' UTC')\n);\nreturn msg", - "outputs": 1, - "timeout": "", - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 340, - "y": 240, - "wires": [["7c9ee522f6dbd3b0"]] - }, - { - "id": "7c9ee522f6dbd3b0", - "type": "ui_text", - "z": "1371dec5.76e671", - "group": "ce9e278.781eed8", - "order": 5, - "width": 0, - "height": 0, - "name": "", - "label": "System Time", - "format": "{{msg.payload}}", - "layout": "row-spread", - "className": "", - "style": false, - "font": "", - "fontSize": "", - "color": "#000000", - "x": 590, - "y": 240, - "wires": [] - }, - { - "id": "6dc9862f2eebe935", - "type": "http in", - "z": "1371dec5.76e671", - "name": "POST /api/system-time", - "url": "/api/system-time", - "method": "post", - "upload": false, - "swaggerDoc": "", - "x": 120, - "y": 360, - "wires": [["a7994a561866dc94", "dea222e9a6553cac"]] - }, - { - "id": "1c4113d4c933fd4b", - "type": "ui_toast", - "z": "1371dec5.76e671", - "position": "top right", - "displayTime": "3", - "highlight": "", - "sendall": true, - "outputs": 0, - "ok": "OK", - "cancel": "", - "raw": false, - "className": "", - "topic": "Setting system time", - "name": "", - "x": 610, - "y": 340, - "wires": [] - }, - { - "id": "a7994a561866dc94", - "type": "function", - "z": "1371dec5.76e671", - "name": "Get system time", - "func": "var date = new Date(msg.payload.timestamp);\nmsg.payload = (\n date.toISOString().replace('T', ' ').replace(/:\\d+\\.\\d+Z/,' UTC')\n);\nreturn msg", - "outputs": 1, - "timeout": "", - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 340, - "y": 340, - "wires": [["1c4113d4c933fd4b", "423659c62bae0524"]] - }, - { - "id": "814ce40bfc413777", - "type": "exec", - "z": "1371dec5.76e671", - "command": "sudo date -s", - "addpay": "payload", - "append": "", - "useSpawn": "", - "timer": "", - "winHide": false, - "name": "Set system time", - "x": 600, - "y": 380, - "wires": [[], [], []] - }, - { - "id": "dea222e9a6553cac", - "type": "function", - "z": "1371dec5.76e671", - "name": "Prepare timestamp", - "func": "msg.payload = ('@' + msg.payload.timestamp).slice(0, -3);\nreturn msg;", - "outputs": 1, - "timeout": "", - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 350, - "y": 380, - "wires": [["814ce40bfc413777"]] - }, - { - "id": "f6f570b10c675854", - "type": "ui_template", - "z": "1371dec5.76e671", - "group": "ce9e278.781eed8", - "name": "Browser time", - "order": 6, - "width": "6", - "height": "1", - "format": "
\n

Browser Time

\n

{{time}}

\n
\n\n", - "storeOutMessages": true, - "fwdInMessages": true, - "resendOnRefresh": false, - "templateScope": "local", - "className": "", - "x": 330, - "y": 200, - "wires": [[]] - }, - { - "id": "3822b843fda94733", - "type": "http in", - "z": "1371dec5.76e671", - "name": "GET /api/system-time", - "url": "/api/system-time", - "method": "get", - "upload": false, - "swaggerDoc": "", - "x": 120, - "y": 420, - "wires": [["5b0a65d3fe187424"]] - }, - { - "id": "5b0a65d3fe187424", - "type": "function", - "z": "1371dec5.76e671", - "name": "Get system time", - "func": "var date = new Date();\nmsg.payload = {'timestamp': date.getTime()};\nreturn msg", - "outputs": 1, - "timeout": "", - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 340, - "y": 420, - "wires": [["312a15407574b38e"]] - }, - { - "id": "423659c62bae0524", - "type": "http response", - "z": "1371dec5.76e671", - "name": "Send POST response", - "statusCode": "", - "headers": {}, - "x": 620, - "y": 300, - "wires": [] - }, - { - "id": "312a15407574b38e", - "type": "http response", - "z": "1371dec5.76e671", - "name": "Send GET response", - "statusCode": "", - "headers": { - "Content-Type": "application/json; charset=UTF-8" - }, - "x": 620, - "y": 420, - "wires": [] - }, - { - "id": "1fdf77b5.24e4e", - "type": "mqtt in", - "z": "9a22e67a.378818", - "name": "", - "topic": "status/#", - "qos": "0", - "datatype": "json", - "broker": "8dc3722c.06efa8", - "nl": false, - "rap": false, - "inputs": 0, - "x": 290, - "y": 340, - "wires": [["fa73983d.318188"]] - }, - { - "id": "4a1e9e3e.27506", - "type": "switch", - "z": "9a22e67a.378818", - "name": "Filter segmenter out", - "property": "topic", - "propertyType": "msg", - "rules": [ - { - "t": "else" - }, - { - "t": "cont", - "v": "status/segmenter", - "vt": "str" - } - ], - "checkall": "true", - "repair": false, - "outputs": 2, - "x": 620, - "y": 340, - "wires": [["58f2e0f.4e8b12"], ["dcf5bd45.16a8d"]] - }, - { - "id": "fa73983d.318188", - "type": "json", - "z": "9a22e67a.378818", - "name": "", - "property": "payload", - "action": "obj", - "pretty": true, - "x": 430, - "y": 340, - "wires": [["4a1e9e3e.27506"]] - }, - { - "id": "58f2e0f.4e8b12", - "type": "link out", - "z": "9a22e67a.378818", - "name": "Fluidic module status", - "links": ["bb628f8d.98f108"], - "x": 795, - "y": 320, - "wires": [] - }, - { - "id": "dcf5bd45.16a8d", - "type": "link out", - "z": "9a22e67a.378818", - "name": "Segmenter module status", - "links": ["25867454.a8e334"], - "x": 795, - "y": 360, - "wires": [] - }, - { - "id": "e41870d7.300eb8", - "type": "link out", - "z": "1eaf21c8.f7a21e", - "name": "Stepper config change", - "mode": "link", - "links": ["438febd245a9f73c"], - "x": 1495, - "y": 380, - "wires": [] - }, - { - "id": "2068e7f.f4efb18", - "type": "delay", - "z": "1eaf21c8.f7a21e", - "name": "", - "pauseType": "delay", - "timeout": "1", - "timeoutUnits": "seconds", - "rate": "1", - "nbRateUnits": "1", - "rateUnits": "second", - "randomFirst": "1", - "randomLast": "5", - "randomUnits": "seconds", - "drop": false, - "outputs": 1, - "x": 1180, - "y": 380, - "wires": [["e41870d7.300eb8"]] - }, - { - "id": "8e3b3d3c.955148", - "type": "subflow:4ed26b8b.253504", - "z": "1eaf21c8.f7a21e", - "name": "", - "env": [], - "x": 1220, - "y": 420, - "wires": [] - }, - { - "id": "54ba7f16.709ad8", - "type": "change", - "z": "1eaf21c8.f7a21e", - "name": "Get pump_steps_per_ml", - "rules": [ - { - "t": "set", - "p": "payload", - "pt": "msg", - "to": "payload.pump_steps_per_ml", - "tot": "msg" - } - ], - "action": "", - "property": "", - "from": "", - "to": "", - "reg": false, - "x": 670, - "y": 400, - "wires": [["ee58b91c.396108"]] - }, - { - "id": "ee58b91c.396108", - "type": "ui_text_input", - "z": "1eaf21c8.f7a21e", - "name": "pump_steps_per_ml", - "label": "Pump: steps per mL", - "tooltip": "", - "group": "6be36295.0ab324", - "order": 6, - "width": 0, - "height": 0, - "passthru": false, - "mode": "number", - "delay": "2000", - "topic": "pump_steps_per_ml", - "sendOnBlur": true, - "className": "", - "topicType": "str", - "x": 940, - "y": 400, - "wires": [["2068e7f.f4efb18", "8e3b3d3c.955148"]] - }, - { - "id": "7534dfd9.8cf3e8", - "type": "ui_template", - "z": "1eaf21c8.f7a21e", - "group": "6be36295.0ab324", - "name": "Information", - "order": 1, - "width": "8", - "height": "3", - "format": "
\n

\n Changing one of these values will cause the Python hardware controller to restart, to reload the new hardware configuration.\n

\n

\n Warning: selecting a hardware version from the dropdown menu below will also overwrite all of your hardware settings, including your camera white balance settings.\n

\n

\n If you are not sure, you probably should not be touching anything here!\n

\n
\n", - "storeOutMessages": true, - "fwdInMessages": true, - "resendOnRefresh": true, - "templateScope": "local", - "className": "", - "x": 610, - "y": 40, - "wires": [[]] - }, - { - "id": "a7e5c7f4.644678", - "type": "ui_dropdown", - "z": "1eaf21c8.f7a21e", - "name": "", - "label": "Hardware version", - "tooltip": "", - "place": "Select option", - "group": "6be36295.0ab324", - "order": 2, - "width": 0, - "height": 0, - "passthru": false, - "multiple": false, - "options": [ - { - "label": "", - "value": "PlanktoScope v2.1", - "type": "str" - }, - { - "label": "", - "value": "PlanktoScope v2.3", - "type": "str" - }, - { - "label": "", - "value": "PlanktoScope v2.5", - "type": "str" - }, - { - "label": "", - "value": "PlanktoScope v2.6", - "type": "str" - }, - { - "label": "", - "value": "PlanktoScope v3.0", - "type": "str" - } - ], - "payload": "", - "topic": "acq_instrument", - "topicType": "str", - "className": "", - "x": 670, - "y": 160, - "wires": [["08d177136bd18281", "56dd3f82c45717f0"]] - }, - { - "id": "1cfadc66.3cde8c", - "type": "subflow:1c24ad9c.bebec2", - "z": "1eaf21c8.f7a21e", - "name": "", - "env": [], - "x": 510, - "y": 300, - "wires": [[]] - }, - { - "id": "3e2c5c1c.4c57b4", - "type": "function", - "z": "1eaf21c8.f7a21e", - "name": "Save global", - "func": "global.set(msg.topic,msg.payload);\nreturn msg;", - "outputs": 1, - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 350, - "y": 300, - "wires": [["1cfadc66.3cde8c"]] - }, - { - "id": "427c312.fc5e65", - "type": "subflow:1c24ad9c.bebec2", - "z": "1eaf21c8.f7a21e", - "name": "", - "env": [], - "x": 170, - "y": 140, - "wires": [["c00c6732b9f36adb"]] - }, - { - "id": "c67c305004f87e39", - "type": "change", - "z": "1eaf21c8.f7a21e", - "name": "Get process_pixel_fixed", - "rules": [ - { - "t": "set", - "p": "payload", - "pt": "msg", - "to": "payload.process_pixel_fixed", - "tot": "msg" - } - ], - "action": "", - "property": "", - "from": "", - "to": "", - "reg": false, - "x": 670, - "y": 480, - "wires": [["244ca5dd62df2bcd"]] - }, - { - "id": "244ca5dd62df2bcd", - "type": "ui_text_input", - "z": "1eaf21c8.f7a21e", - "name": "process_pixel_fixed", - "label": "Pixel size calibration: um per pixel", - "tooltip": "Object size in µm / pixel. 0 will remove this calibration.", - "group": "6be36295.0ab324", - "order": 8, - "width": 0, - "height": 0, - "passthru": true, - "mode": "number", - "delay": "1000", - "topic": "process_pixel_fixed", - "sendOnBlur": true, - "className": "", - "topicType": "str", - "x": 940, - "y": 480, - "wires": [["8e3b3d3c.955148", "f9b47f4b1da15778"]] - }, - { - "id": "f9b47f4b1da15778", - "type": "function", - "z": "1eaf21c8.f7a21e", - "name": "Set or remove if null", - "func": "if (msg.payload == 0){\n global.set(msg.topic,undefined)\n}\nelse {\n global.set(msg.topic,msg.payload);\n}\n\nreturn msg", - "outputs": 1, - "noerr": 0, - "initialize": "", - "finalize": "", - "libs": [], - "x": 1220, - "y": 480, - "wires": [["5d5ad36d2c50dcc2"]] - }, - { - "id": "5d5ad36d2c50dcc2", - 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To prevent data corruption, please always shutdown the machine before unplugging the unit.\n

\nRemember to first unlock the shutdown button.\n
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\n

\n To start using your PlanktoScope, please indicate the version of your PlanktoScope hardware:\n

\n
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630, + "y": 200, + "wires": [ + [ + "9f501f49.45645", + "46eb1bf8.3dc5f4", + "3ac7b631f5d8ef90" + ] + ] + }, + { + "id": "82c5fc77.59c97", + "type": "ui_text_input", + "z": "b771c342.49603", + "name": "sample_operator", + "label": "Name of the operator*", + "tooltip": "", + "group": "3e1ba03d.f01d8", + "order": 3, + "width": 0, + "height": 0, + "passthru": true, + "mode": "text", + "delay": "300", + "topic": "sample_operator", + "sendOnBlur": true, + "className": "", + "topicType": "str", + "x": 650, + "y": 160, + "wires": [ + [ + "9f501f49.45645" + ] + ] + }, + { + "id": "9c882b37.fde668", + "type": "ui_text_input", + "z": "b771c342.49603", + "name": "sample_project", + "label": "Name of the project*", + "tooltip": "", + "group": "3e1ba03d.f01d8", + "order": 1, + "width": 0, + "height": 0, + "passthru": true, + "mode": "text", + "delay": "300", + "topic": "sample_project", + "sendOnBlur": true, + "className": "", + "topicType": "str", + "x": 660, + "y": 40, + "wires": [ + [ + "9f501f49.45645" + ] + ] + }, + { + "id": "94eb4221.9b92c", + "type": "ui_text_input", + "z": "b771c342.49603", + "name": "sample_id", + "label": "Station ID*", + "tooltip": "", + "group": "3e1ba03d.f01d8", + "order": 4, + "width": 0, + "height": 0, + "passthru": true, + "mode": "text", + "delay": "300", + "topic": "sample_id", + "sendOnBlur": true, + "className": "", + "topicType": "str", + "x": 670, + "y": 120, + "wires": [ + [ + "9f501f49.45645" + ] + ] + }, + { + "id": "9f501f49.45645", + "type": "function", + "z": "b771c342.49603", + "name": "set global", + "func": "global.set(msg.topic,msg.payload);", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 1080, + "y": 200, + "wires": [ + [] + ] + }, + { + "id": "222c851d.5d0a3a", + "type": "ui_ui_control", + "z": "b771c342.49603", + "name": "", + "events": "change", + "x": 400, + "y": 880, + "wires": [ + [] + ] + }, + { + "id": "52f6b103.1efb6", + "type": "ui_toast", + "z": "b771c342.49603", + "position": "dialog", + "displayTime": "3", + "highlight": "", + "sendall": true, + "outputs": 1, + "ok": "OK", + "cancel": "", + "raw": false, + "topic": "", + "name": "", + "x": 710, + "y": 980, + "wires": [ + [] + ] + }, + { + "id": "986d960a.c75908", + "type": "function", + "z": "b771c342.49603", + "name": "Check form", + "func": "var sample_project= global.get(\"sample_project\");\nvar sample_id= global.get(\"sample_id\");\nvar sample_operator= global.get(\"sample_operator\");\nvar sample_sampling_gear= global.get(\"sample_sampling_gear\");\nvar object_lat= global.get(\"object_lat\");\nvar object_lon= global.get(\"object_lon\");\nvar object_date= global.get(\"object_date\");\nvar object_time= global.get(\"object_time\");\nif (sample_project === undefined || sample_project === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Sample project\"\n return [null, msg];\n}\n\nelse if (sample_id === undefined || sample_id === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Sample ID\"\n return [null, msg];\n}\n\nelse if (sample_operator === undefined || sample_operator === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Sample operator\"\n return [null, msg];\n}\n\nelse if (sample_sampling_gear === undefined || sample_sampling_gear === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Sample sampling gear\"\n return [null, msg];\n}\n\nelse if (object_lat === undefined || object_lat === null) {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Latitude of sample\"\n return [null, msg];\n}\n\nelse if (object_lon === undefined || object_lon === null) {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Longitude of sample\"\n return [null, msg];\n}\n\nelse if (object_date === undefined || object_date === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Date of sample\"\n return [null, msg];\n}\n\nelse if (object_time === undefined || object_time === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Time of sample\"\n return [null, msg];\n}\nelse if (sample_sampling_gear.startsWith(\"net\")){\n var object_lat_end = global.get(\"object_lat_end\");\n var object_lon_end = global.get(\"object_lon_end\");\n var object_date_end = global.get(\"object_date_end\");\n var object_time_end = global.get(\"object_time_end\");\n var sample_gear_net_opening = global.get(\"sample_gear_net_opening\");\n\n if (object_lat_end === undefined || object_lat_end === null) {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Latitude of retrieval\"\n return [null, msg];\n }\n \n else if (object_lon_end === undefined || object_lon_end === null) {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Longitude of retrieval\"\n return [null, msg];\n }\n \n else if (object_date_end === undefined || object_date_end === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Date of retrieval\"\n return [null, msg];\n }\n \n else if (object_time_end === undefined || object_time_end === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Time of retrieval\"\n return [null, msg];\n }\n \n else if (sample_gear_net_opening === undefined || sample_gear_net_opening === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Net opening dimension\"\n return [null, msg];\n }\n \n if (sample_sampling_gear == \"net_decknet\"){\n var sample_total_volume = global.get(\"sample_total_volume\");\n if (sample_total_volume === undefined || sample_total_volume === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Decknet flowmeter readings\"\n return [null, msg];\n }\n }\n}\nmsg.topic = \"config_save\"\nmsg.payload={\"tab\":\"Optic Configuration\"};\n\nreturn [msg, null];", + "outputs": 2, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 470, + "y": 940, + "wires": [ + [ + "726a7822.cd6298", + "e2b277c1.07283" + ], + [ + "52f6b103.1efb6" + ] + ], + "outputLabels": [ + "message", + "error" + ] + }, + { + "id": "726a7822.cd6298", + "type": "ui_ui_control", + "z": "b771c342.49603", + "name": "", + "events": "change", + "x": 700, + "y": 900, + "wires": [ + [] + ] + }, + { + "id": "16de754c.cc969b", + "type": "ui_button", + "z": "b771c342.49603", + "name": "", + "group": "5517c651.b2f668", + "order": 1, + "width": 5, + "height": 1, + "passthru": false, + "label": "Previous", + "tooltip": "", + "color": "#097479", + "bgcolor": "white", + "icon": "keyboard_return", + "payload": "{\"tab\":\"Home\"}", + "payloadType": "json", + "topic": "", + "x": 240, + "y": 880, + "wires": [ + [ + "222c851d.5d0a3a" + ] + ] + }, + { + "id": "84f3d040.5f7ea", + "type": "ui_button", + "z": "b771c342.49603", + "name": "", + "group": "5517c651.b2f668", + "order": 2, + "width": 5, + "height": 1, + "passthru": false, + "label": "Continue", + "tooltip": "", + "color": "#097479", + "bgcolor": "white", + "icon": "keyboard_tab", + "payload": "{\"tab\":\"Home\"}", + "payloadType": "json", + "topic": "", + "x": 240, + "y": 940, + "wires": [ + [ + "986d960a.c75908" + ] + ] + }, + { + "id": "d027a6bf.7049e8", + "type": "function", + "z": "b771c342.49603", + "name": "get sample_projet", + "func": "msg.payload = msg.payload.sample_project;\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 310, + "y": 40, + "wires": [ + [ + "9c882b37.fde668" + ] + ] + }, + { + "id": "5a811caf.0f3144", + "type": "function", + "z": "b771c342.49603", + "name": "get sample_ship", + "func": "msg.payload = msg.payload.sample_ship;\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 300, + "y": 80, + "wires": [ + [ + "4557d689.a4fa88" + ] + ] + }, + { + "id": "45911c98.2bd83c", + "type": "function", + "z": "b771c342.49603", + "name": "get sample_id", + "func": "msg.payload = msg.payload.sample_id;\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 300, + "y": 120, + "wires": [ + [ + "94eb4221.9b92c" + ] + ] + }, + { + "id": "1e09a4ab.72996b", + "type": "function", + "z": "b771c342.49603", + "name": "get sample_operator", + "func": "msg.payload = msg.payload.sample_operator;\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 320, + "y": 160, + "wires": [ + [ + "82c5fc77.59c97" + ] + ] + }, + { + "id": "a3272681.f271c8", + "type": "function", + "z": "b771c342.49603", + "name": "get sample_sampling_gear", + "func": "msg.topic = \"sample_sampling_gear\"\nif (msg.payload.sample_sampling_gear === undefined){\n msg.payload = \"net\";\n}\nelse\n{\n msg.payload = msg.payload.sample_sampling_gear;\n}\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 340, + "y": 200, + "wires": [ + [ + "fcfc31ae.af3af" + ] + ] + }, + { + "id": "a6907a38.f6611", + "type": "subflow:1c24ad9c.bebec2", + "z": "b771c342.49603", + "name": "", + "env": [], + "x": 70, + "y": 220, + "wires": [ + [ + "d027a6bf.7049e8", + "5a811caf.0f3144", + "45911c98.2bd83c", + "1e09a4ab.72996b", + "8dff1648.82e42", + "9f04c5ec.75f3d8", + "f408a273.4fb538", + "e73fd87d.d24e4", + "489c8e06.cc7d6", + "a3272681.f271c8" + ] + ] + }, + { + "id": "e2b277c1.07283", + "type": "subflow:1c24ad9c.bebec2", + "z": "b771c342.49603", + "name": "", + "env": [], + "x": 690, + "y": 940, + "wires": [ + [] + ] + }, + { + "id": "9c7f7fc9.c8d3a", + "type": "ui_text_input", + "z": "b771c342.49603", + "name": "object_depth_max", + "label": "Max sampling depth (m)", + "tooltip": "in m", + "group": "3e1ba03d.f01d8", + "order": 10, + "width": 5, + "height": 1, + "passthru": true, + "mode": "number", + "delay": "300", + "topic": "object_depth_max", + "sendOnBlur": true, + "className": "", + "topicType": "str", + "x": 650, + "y": 240, + "wires": [ + [ + "9f501f49.45645" + ] + ] + }, + { + "id": "317eeeb7.8d3042", + "type": "ui_text_input", + "z": "b771c342.49603", + "name": "object_depth_min", + "label": "Min sampling depth (m)", + "tooltip": "in m", + "group": "3e1ba03d.f01d8", + "order": 9, + "width": 5, + "height": 1, + "passthru": true, + "mode": "number", + "delay": "300", + "topic": "object_depth_min", + "sendOnBlur": true, + "className": "", + "topicType": "str", + "x": 650, + "y": 280, + "wires": [ + [ + "9f501f49.45645" + ] + ] + }, + { + "id": "cbb123ab.fd3428", + "type": "ui_ui_control", + "z": "b771c342.49603", + "name": "show/hide net groups", + "events": "change", + "x": 1320, + "y": 300, + "wires": [ + [] + ] + }, + { + "id": "642ff403.1ed91c", + "type": "ui_text_input", + "z": "b771c342.49603", + "name": "sample_concentrated_sample_volume", + "label": "Concentrated sample volume (mL)", + "tooltip": "Volume extracted from the net codend (in mL)", + "group": "3e1ba03d.f01d8", + "order": 12, + "width": 10, + "height": 1, + "passthru": true, + "mode": "number", + "delay": "300", + "topic": "sample_concentrated_sample_volume", + "sendOnBlur": true, + "className": "", + "topicType": "str", + "x": 590, + "y": 440, + "wires": [ + [ + "9f501f49.45645" + ] + ] + }, + { + "id": "e967b844.46aa48", + "type": "ui_text_input", + "z": "b771c342.49603", + "name": "sample_gear_net_opening", + "label": "Net opening dimension (mm)", + "tooltip": "Size of the net mouth opening (in mm)", + "group": "cf5d9f0e.d57e7", + "order": 1, + "width": 10, + "height": 1, + "passthru": true, + "mode": "number", + "delay": "300", + "topic": "sample_gear_net_opening", + "sendOnBlur": true, + "className": "", + "topicType": "str", + "x": 620, + "y": 320, + "wires": [ + [ + "9f501f49.45645" + ] + ] + }, + { + "id": "c0ce5626.b6c5", + "type": "ui_toast", + "z": "b771c342.49603", + "position": "dialog", + "displayTime": "3", + "highlight": "", + "sendall": true, + "outputs": 1, + "ok": "OK", + "cancel": "", + "raw": false, + "topic": "", + "name": "", + "x": 1230, + "y": 620, + "wires": [ + [] + ] + }, + { + "id": "c33f1124.af6688", + "type": "ui_form", + "z": "b771c342.49603", + "name": "sample_location", + "label": "Sample Location", + "group": "cef1e703.bcf3c8", + "order": 1, + "width": 0, + "height": 0, + "options": [ + { + "label": "Latitude (36.574439°N or 36°57.4439'N)", + "value": "object_lat", + "type": "text", + "required": true, + "rows": null + }, + { + "label": "Longitude (110.42100°W or 110°4.2100'W)", + "value": "object_lon", + "type": "text", + "required": true, + "rows": null + }, + { + "label": "Date (YYYY-MM-DD, UTC)", + "value": "object_date", + "type": "text", + "required": true, + "rows": null + }, + { + "label": "Time (HH:MM(:SS), UTC 24h)", + "value": "object_time", + "type": "text", + "required": true, + "rows": null + } + ], + "formValue": { + "object_lat": "", + "object_lon": "", + "object_date": "", + "object_time": "" + }, + "payload": "", + "submit": "Validate", + "cancel": "Reset", + "topic": "sample_location", + "x": 660, + "y": 580, + "wires": [ + [ + "14658615.47c862", + "a9fb1f4b83fc25a7" + ] + ] + }, + { + "id": "358908cd.416ab", + "type": "ui_form", + "z": "b771c342.49603", + "name": "net_throw_location", + "label": "Net Throw Location", + "group": "cf5d9f0e.d57e7", + "order": 3, + "width": 0, + "height": 0, + "options": [ + { + "label": "Latitude (36.574439°N or 36°57.4439'N)", + "value": "object_lat", + "type": "text", + "required": true, + "rows": null + }, + { + "label": "Longitude (110.42100°W or 110°4.2100'W)", + "value": "object_lon", + "type": "text", + "required": true, + "rows": null + }, + { + "label": "Date (YYYY-MM-DD UTC)", + "value": "object_date", + "type": "text", + "required": true, + "rows": null + }, + { + "label": "Time (HH:MM, UTC 24h)", + "value": "object_time", + "type": "text", + "required": true, + "rows": null + } + ], + "formValue": { + "object_lat": "", + "object_lon": "", + "object_date": "", + "object_time": "" + }, + "payload": "", + "submit": "Validate", + "cancel": "", + "topic": "net_throw_location", + "topicType": "str", + "splitLayout": false, + "className": "", + "x": 650, + "y": 620, + "wires": [ + [ + "14658615.47c862", + "ad54b89540460d27" + ] + ] + }, + { + "id": "56d40584.eff4e4", + "type": "ui_form", + "z": "b771c342.49603", + "name": "net_retrieval_location", + "label": "Net Retrieval Location", + "group": "cf5d9f0e.d57e7", + "order": 4, + "width": 0, + "height": 0, + "options": [ + { + "label": "Latitude (36.574439°N or 36°57.4439'N)", + "value": "object_lat_end", + "type": "text", + "required": true, + "rows": null + }, + { + "label": "Longitude (110.42100°W or 110°4.2100'W)", + "value": "object_lon_end", + "type": "text", + "required": true, + "rows": null + }, + { + "label": "Date (YYYY-MM-DD UTC)", + "value": "object_date_end", + "type": "text", + "required": true, + "rows": null + }, + { + "label": "Time (HH:MM, UTC 24h)", + "value": "object_time_end", + "type": "text", + "required": true, + "rows": null + } + ], + "formValue": { + "object_lat_end": "", + "object_lon_end": "", + "object_date_end": "", + "object_time_end": "" + }, + "payload": "", + "submit": "Validate", + "cancel": "", + "topic": "net_retrieval_location", + "topicType": "str", + "splitLayout": false, + "x": 640, + "y": 660, + "wires": [ + [ + "14658615.47c862", + "c21bf0244e67e40a" + ] + ] + }, + { + "id": "14658615.47c862", + "type": "function", + "z": "b771c342.49603", + "name": "Validate Location / Timestamp", + "func": "// Code added here will be run once\n// whenever the node is started.\nfunction ConvertDDMMToDD(input) {\n // Input Format 36°57.4439'N, 110°4.2100'W\n // From https://stackoverflow.com/questions/1140189/converting-latitude-and-longitude-to-decimal-values\n if (!input.match(/\\d+°\\d+\\.*\\d*\\'[NSEW]/)){\n \treturn \"parsing error\"\n }\n var parts = input.split(/[^\\d.\\w]+/)\n if (parts.length != 3){\n \treturn \"parsing error\"\n }\n var dd = Number(parts[0]) + Number(parts[1])/60\n return dd.toFixed(6) + parts[2]\n}\n\nfunction ValidateCoordinates(input, lat){\n // Input Format 36.574439°N, 110.42100°W\n // Or 36°57.4439'N, 110°4.2100'W\n if (input.match(\"'\")){\n input = ConvertDDMMToDD(input)\n }\n \n var error = {}\n\n if (input.startsWith(\"parsing error\")){\n error.topic = \"Error with the \"\n error.payload = \"You need to respect the format example, 36.574439°N or 36°57.4439'N\"\n return [null, error]\n }\n \n var direction = input.match(/[NSEW]/)\n var position = input.match(/[\\+\\-\\d\\.]+/)\n \n if (direction === null){\n error.topic = \"Error with the \"\n error.payload = \"You need to explicitely enter N/S/E/W\"\n return [null, error]\n }\n \n // Test that position is only made of digits!\n if(/^[\\+\\-]/.test(position)){\n error.topic = \"Error with the \"\n error.payload = \"Use of +/- sign is inconsistent with N/S/E/W letter! Please only use N/S/E/W!\"\n return [null, error]\n }\n \n var dd = Number(position)\n if (lat){\n // Check latitude\n if (direction == \"S\" || direction == \"N\") {\n if (dd>90.0){\n error.topic = \"Error with the \"\n error.payload = \"Latitude is more than 90°\"\n return [null, error]\n }\n }\n if (direction == \"W\" || direction == \"E\") {\n error.topic = \"Error with the \"\n error.payload = \"This is not a Latitude!\"\n return [null, error]\n }\n }\n else{\n // Check longitude\n if (direction == \"W\" || direction == \"E\") {\n if (dd>180.0){\n error.topic = \"Error with the \"\n error.payload = \"Longitude is more than 180°\"\n return [null, error]\n }\n }\n if (direction == \"N\" || direction == \"S\") {\n error.topic = \"Error with the \"\n error.payload = \"This is not a Longitude!\"\n return [null, error]\n }\n }\n \n if (direction == \"S\" || direction == \"W\") {\n dd = dd * -1\n } // Don't do anything for N or E\n return [dd.toFixed(4), null]\n \n}\n\nfunction ValidateDate(input){\n // Input Format 2020-12-25\n var error = {};\n \n if (! /20\\d{2}-[0-1]\\d-[0-3]\\d/.test(input)){\n error.topic = \"Error with the date\";\n error.payload = \"The date should respect the ISO format YYYY-MM-DD\";\n return [null, error];\n }\n else {\n var date = input.match(/\\d+/g);\n if (!((2000 < date[0]) && (date[0] < 2100))){\n error.topic = \"Error with the date\"\n error.payload = \"The year should be between 2000 and 2100\"\n return [null, error]\n }\n else if (!((0 < date[1]) && (date[1] <= 12))){\n error.topic = \"Error with the date\"\n error.payload = \"The month should be between 01 and 12\"\n return [null, error]\n }\n else if (!((0 < date[2]) && (date[2] <= 31))){\n error.topic = \"Error with the date\"\n error.payload = \"The day should be between 01 and 31\"\n return [null, error]\n }\n }\n return [input.replace(/-/g, ''), null]\n}\n\nfunction ValidateTime(input){\n // Input Format 12:00\n var error = {}\n \n if (! /[0-2]?\\d:[0-5]\\d/.test(input)){\n error.topic = \"Error with the time\"\n error.payload = \"The date should respect the ISO format HH:MM\"\n return [null, error]\n }\n else {\n var time = input.match(/\\d+/g)\n \n if (!((0 <= time[0]) && (time[0] < 24))){\n error.topic = \"Error with the time\"\n error.payload = \"The hours should be 0 and 23.\"\n return [null, error]\n }\n else if (!((0 <= time[1]) && (time[1] < 60))){\n error.topic = \"Error with the time\"\n error.payload = \"The minutes should be between 0 and 59\"\n return [null, error]\n }\n }\n return [input.replace(/:/g, ''), null]\n}\n\n\nvar ret\nvar payload_for_form = {payload:{}}\nmsg.valid = false\n\nif (msg.topic == \"culture_timestamp\"){\n ret = ValidateDate(msg.payload.object_date)\n if (ret[1] !== null){\n msg.topic = ret[1].topic + \" of the sample\"\n msg.payload = ret[1].payload\n return [msg, null]\n }\n global.set(\"object_date\", ret[0])\n \n ret = ValidateTime(msg.payload.object_time)\n if (ret[1] !== null){\n msg.topic = ret[1].topic + \" of the sample\"\n msg.payload = ret[1].payload\n return [msg, null]\n }\n global.set(\"object_time\", ret[0])\n return [{topic: \"Date and time format valid!\", payload: \"All good!\", valid: true}, payload_for_form]\n}\nelse if (msg.topic == \"net_retrieval_location\"){\n ret = ValidateCoordinates(msg.payload.object_lat_end, true);\n if (ret[1] !== null){\n msg.topic = ret[1].topic + \" Latitude\"\n msg.payload = ret[1].payload\n return [msg, null]\n }\n global.set(\"object_lat_end\", ret[0])\n ret = ValidateCoordinates(msg.payload.object_lon_end, false)\n if (ret[1] !== null){\n msg.topic = ret[1].topic + \" Longitude\"\n msg.payload = ret[1].payload\n return [msg, null]\n }\n global.set(\"object_lon_end\", ret[0]);\n \n ret = ValidateDate(msg.payload.object_date_end)\n if (ret[1] !== null){\n msg.topic = ret[1].topic + \" of the sample retrieval\"\n msg.payload = ret[1].payload\n return [msg, null]\n }\n global.set(\"object_date_end\", ret[0])\n \n ret = ValidateTime(msg.payload.object_time_end)\n if (ret[1] !== null){\n msg.topic = ret[1].topic + \" of the sample retrieval\"\n msg.payload = ret[1].payload\n return [msg, null]\n }\n global.set(\"object_time_end\", ret[0])\n}\nelse{\n ret = ValidateCoordinates(msg.payload.object_lat, true);\n if (ret[1] !== null){\n msg.topic = ret[1].topic + \" Latitude\";\n msg.payload = ret[1].payload\n return [msg, null]\n }\n global.set(\"object_lat\", ret[0]);\n payload_for_form.payload[\"object_lat_end\"] = msg.payload.object_lat;\n \n ret = ValidateCoordinates(msg.payload.object_lon, false);\n if (ret[1] !== null){\n msg.topic = ret[1].topic + \" Longitude\"\n msg.payload = ret[1].payload\n return [msg, null]\n }\n global.set(\"object_lon\", ret[0])\n payload_for_form.payload[\"object_lon_end\"] = msg.payload.object_lon;\n\n ret = ValidateDate(msg.payload.object_date)\n if (ret[1] !== null){\n msg.topic = ret[1].topic + \" of the sample\"\n msg.payload = ret[1].payload\n return [msg, null]\n }\n global.set(\"object_date\", ret[0])\n payload_for_form.payload[\"object_date_end\"] = msg.payload.object_date;\n \n ret = ValidateTime(msg.payload.object_time)\n if (ret[1] !== null){\n msg.topic = ret[1].topic + \" of the sample\"\n msg.payload = ret[1].payload\n return [msg, null]\n }\n global.set(\"object_time\", ret[0])\n payload_for_form.payload[\"object_time_end\"] = msg.payload.object_time;\n}\nreturn [{topic: \"Coordinates valid!\", payload: \"All good!\", valid: true}, payload_for_form]\n", + "outputs": 2, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 930, + "y": 620, + "wires": [ + [ + "c0ce5626.b6c5", + "9a18a4b4.178448" + ], + [ + "56d40584.eff4e4" + ] + ], + "inputLabels": [ + "Location form data" + ], + "outputLabels": [ + "Message", + "Location validated" + ] + }, + { + "id": "46eb1bf8.3dc5f4", + "type": "function", + "z": "b771c342.49603", + "name": "Net check", + "func": "var decknet = {}\nvar activation_msg = {}\n\nif (msg.payload.startsWith(\"net_decknet\")){\n decknet.enabled = true;\n}\nelse {\n decknet.enabled = false;\n}\n\nif (msg.payload.startsWith(\"net\")){\n activation_msg.payload = {\"group\":{\"show\":[\"Sample_Net_Metadata\"],\"hide\":[\"Sample_Sample_Location\",\"Sample_Culture_Date_and_Time\"]}};\n}\nelse if (msg.payload != \"culture\" && msg.payload != \"test\"){\n activation_msg.payload = {\"group\":{\"show\":[\"Sample_Sample_Location\"], \"hide\":[\"Sample_Net_Metadata\",\"Sample_Culture_Date_and_Time\"]}};\n}\n\n\nreturn [decknet, activation_msg];", + "outputs": 2, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 1080, + "y": 240, + "wires": [ + [ + "516375fd.2ed61c", + "470e382a.25691", + "fbe32ac8.ff6a38" + ], + [ + "cbb123ab.fd3428" + ] + ], + "outputLabels": [ + "decknet activation", + "group display control" + ] + }, + { + "id": "516375fd.2ed61c", + "type": "ui_text_input", + "z": "b771c342.49603", + "name": "sample_total_flowmeter_start", + "label": "Decknet flowmeter start", + "tooltip": "in L", + "group": "cf5d9f0e.d57e7", + "order": 6, + "width": 5, + "height": 1, + "passthru": false, + "mode": "text", + "delay": "300", + "topic": "sample_total_flowmeter_start", + "sendOnBlur": true, + "className": "", + "topicType": "str", + "x": 1340, + "y": 220, + "wires": [ + [ + "e9bc112c.eb75f8" + ] + ] + }, + { + "id": "470e382a.25691", + "type": "ui_text_input", + "z": "b771c342.49603", + "name": "sample_total_flowmeter_end", + "label": "Decknet flowmeter end", + "tooltip": "in L", + "group": "cf5d9f0e.d57e7", + "order": 7, + "width": 5, + "height": 1, + "passthru": false, + "mode": "text", + "delay": "300", + "topic": "sample_total_flowmeter_end", + "sendOnBlur": true, + "className": "", + "topicType": "str", + "x": 1340, + "y": 260, + "wires": [ + [ + "e9bc112c.eb75f8" + ] + ] + }, + { + "id": "fbe32ac8.ff6a38", + "type": "ui_template", + "z": "b771c342.49603", + "group": "cf5d9f0e.d57e7", + "name": "Decknet flowmeter read", + "order": 5, + "width": 10, + "height": 1, + "format": "
\n

Decknet flowmeter readings

\n

Those values are used to calculate sample_total_volume. Values are in L.

\n
\n", + "storeOutMessages": true, + "fwdInMessages": true, + "resendOnRefresh": true, + "templateScope": "local", + "x": 1330, + "y": 180, + "wires": [ + [] + ] + }, + { + "id": "f408a273.4fb538", + "type": "function", + "z": "b771c342.49603", + "name": "get sample_gear_net_opening", + "func": "if (msg.payload.sample_gear_net_opening === null){\n msg.payload = 0;\n global.set(\"sample_gear_net_opening\",msg.payload);\n}\nelse\n{\n msg.payload = msg.payload.sample_gear_net_opening;\n}\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 350, + "y": 320, + "wires": [ + [ + "e967b844.46aa48" + ] + ] + }, + { + "id": "8dff1648.82e42", + "type": "function", + "z": "b771c342.49603", + "name": "get object_depth_max", + "func": "if (msg.payload.object_depth_max === null){\n msg.payload = 0;\n global.set(\"object_depth_max\",msg.payload);\n}\nelse\n{\n msg.payload = msg.payload.object_depth_max;\n}\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 320, + "y": 240, + "wires": [ + [ + "9c7f7fc9.c8d3a" + ] + ] + }, + { + "id": "9f04c5ec.75f3d8", + "type": "function", + "z": "b771c342.49603", + "name": "get object_depth_min", + "func": "if (msg.payload.object_depth_min === null){\n msg.payload = 0;\n global.set(\"object_depth_min\",msg.payload);\n}\nelse\n{\n msg.payload = msg.payload.object_depth_min;\n}\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 320, + "y": 280, + "wires": [ + [ + "317eeeb7.8d3042" + ] + ] + }, + { + "id": "9a18a4b4.178448", + "type": "function", + "z": "b771c342.49603", + "name": "calculate sample_total_volume", + "func": "\n/*object_lat = 33.95 \nobject_lon = 118.4 \nobject_lat_end = 40.6333 \nobject_lon_end = 73.78333\nsample_gear_net_opening = 40*/\n\n// Copyright 1997 Ed Williams. All rights reserved\n// Adapted by Romain Bazile - Ocean Trotter - 01-2021\n\ndecpl=4 // Dec places of minutes output\n\nellipse = {\"name\":\"WSG84\", \"a\":6378.137/1.852, \"invf\":298.257223563}\n\nfunction ComputeDistance(lat1, lon1, lat2, lon2){\n var d,crs12,crs21\n var argacos\n var a,invf\n \n // lat and lon in radian\n lat1=(Math.PI/180)*lat1\n lat2=(Math.PI/180)*lat2\n lon1=(Math.PI/180)*lon1\n lon2=(Math.PI/180)*lon2\n \n //alert(\"lat1=\" + lat1 + \"lon1=\" + lon1 +\"\\nlat2=\" +lat2+ \"lon2=\"+lon2)\n \n /* get distance conversion factor */\n dc=1.852 //km\n //alert(\"dc=\" +dc)\n \n //showProps(ellipse,\"ellipse\")\n \n // elliptic code\n d=crsdist_ell(lat1,-lon1,lat2,-lon2,ellipse) // ellipse uses East negative\n d=d*dc // go to physical units\n \n //alert(\"d=\"+d+\" crs12=\"+crs12+\" crs21=\"+crs21)\n return d\n}\n\nfunction crsdist(lat1,lon1,lat2,lon2){ // radian args\n /* compute course and distance (spherical) */\n if ((lat1+lat2===0) && (Math.abs(lon1-lon2)==Math.PI) && \n (Math.abs(lat1) != (Math.PI/180)*90)){\t\n \talert(\"Course between antipodal points is undefined\")\n }\n \n d = Math.acos(Math.sin(lat1)*Math.sin(lat2)+Math.cos(lat1)*Math.cos(lat2)*Math.cos(lon1-lon2))\n return d\n}\n\nfunction crsdist_ell(glat1,glon1,glat2,glon2,ellipse){\n // glat1 initial geodetic latitude in radians N positive \n // glon1 initial geodetic longitude in radians E positive \n // glat2 final geodetic latitude in radians N positive \n // glon2 final geodetic longitude in radians E positive \n a=ellipse.a\n f=1/ellipse.invf\n //alert(\"a=\"+a+\" f=\"+f)\n var r, tu1, tu2, cu1, su1, cu2, s1, b1, f1\n var x, sx, cx, sy, cy,y, sa, c2a, cz, e, c, d\n var EPS= 0.00000000005\n var faz, baz, s\n var iter=1\n var MAXITER=100\n if ((glat1+glat2===0) && (Math.abs(glon1-glon2)==Math.PI)){\n alert(\"Course and distance between antipodal points is undefined\")\n glat1=glat1+0.00001 // allow algorithm to complete\n }\n if (glat1==glat2 && (glon1==glon2 || Math.abs(Math.abs(glon1-glon2)-2*Math.PI) < EPS)){\n alert(\"Points 1 and 2 are identical- course undefined\")\n out=new MakeArray(0)\n out.d=0\n out.crs12=0\n out.crs21=Math.PI\n return out\n }\n r = 1 - f\n tu1 = r * Math.tan (glat1)\n tu2 = r * Math.tan (glat2)\n cu1 = 1 / Math.sqrt (1 + tu1 * tu1)\n su1 = cu1 * tu1\n cu2 = 1 / Math.sqrt (1 + tu2 * tu2)\n s1 = cu1 * cu2\n b1 = s1 * tu2\n f1 = b1 * tu1\n x = glon2 - glon1\n d = x + 1 // force one pass\n while ((Math.abs(d - x) > EPS) && (iter < MAXITER))\n {\n iter=iter+1\n sx = Math.sin (x)\n // alert(\"sx=\"+sx)\n cx = Math.cos (x)\n tu1 = cu2 * sx\n tu2 = b1 - su1 * cu2 * cx\n sy = Math.sqrt(tu1 * tu1 + tu2 * tu2)\n cy = s1 * cx + f1\n y = atan2 (sy, cy)\n sa = s1 * sx / sy\n c2a = 1 - sa * sa\n cz = f1 + f1\n if (c2a > 0)\n cz = cy - cz / c2a\n e = cz * cz * 2 - 1\n c = ((-3 * c2a + 4) * f + 4) * c2a * f / 16\n d = x\n x = ((e * cy * c + cz) * sy * c + y) * sa\n x = (1 - c) * x * f + glon2 - glon1\n }\n x = Math.sqrt ((1 / (r * r) - 1) * c2a + 1)\n x +=1\n x = (x - 2) / x\n c = 1 - x\n c = (x * x / 4 + 1) / c\n d = (0.375 * x * x - 1) * x\n x = e * cy\n d = ((((sy*sy*4-3)*(1-e-e)*cz*d/6-x)*d/4+cz)*sy*d+y)*c*a*r\n if (Math.abs(iter-MAXITER)0) && (y>=0)){ out= Math.atan(y/x)}\n if ((x >0) && (y<0)) { out= Math.atan(y/x)+2*Math.PI}\n if ((x===0) && (y>0)) { out= Math.PI/2}\n if ((x===0) && (y<0)) { out= 3*Math.PI/2} \n if ((x===0) && (y===0)) {\n alert(\"atan2(0,0) undefined\")\n out= 0\n } \n return out\n}\n\nfunction showProps(obj,objName){\n var result=\"\"\n for (var i in obj){\n result +=objName + \".\" + i + \" = \" + obj[i] + \"\\n\"\n }\n alert(result)\n}\n\n\nif (msg.valid){\n msg.topic=\"sample_total_volume\"\n \n var object_lat_end = global.get(\"object_lat_end\")\n var object_lon_end = global.get(\"object_lon_end\")\n var sample_sampling_gear = global.get(\"sample_sampling_gear\")\n \n if (sample_sampling_gear.startsWith(\"net\") && sample_sampling_gear != \"net_decknet\") {\n if (!(isNaN(object_lat_end) && isNaN(object_lon_end))){\n var object_lat = global.get(\"object_lat\")\n var object_lon = global.get(\"object_lon\")\n var sample_gear_net_opening = global.get(\"sample_gear_net_opening\");\n\n distance_km = ComputeDistance(object_lat, object_lon, object_lat_end, object_lon_end)\n\n sample_total_volume = distance_km*(Math.PI*(sample_gear_net_opening/2)*(sample_gear_net_opening/2)) // liters\n sample_total_volume = Math.round(sample_total_volume + Number.EPSILON)\n msg.payload = sample_total_volume\n return msg\n }\n }\n}", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 930, + "y": 760, + "wires": [ + [ + "4f6afc5a.81e454" + ] + ] + }, + { + "id": "e73fd87d.d24e4", + "type": "function", + "z": "b771c342.49603", + "name": "get acq_minimum_mesh", + "func": "msg.payload = msg.payload.acq_minimum_mesh;\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 330, + "y": 360, + "wires": [ + [ + "1aad56b31b5647ce" + ] + ] + }, + { + "id": "489c8e06.cc7d6", + "type": "function", + "z": "b771c342.49603", + "name": "get acq_maximum_mesh", + "func": "msg.payload = msg.payload.acq_maximum_mesh;\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 330, + "y": 400, + "wires": [ + [ + "10eb31a2d7a6590c" + ] + ] + }, + { + "id": "58de1340.3cc354", + "type": "ui_text_input", + "z": "b771c342.49603", + "name": "sample_dilution_factor", + "label": "Concentration Factor", + "tooltip": "0.5 if diluted by two; 2 if concentrated by a factor 2", + "group": "3e1ba03d.f01d8", + "order": 13, + "width": 10, + "height": 1, + "passthru": true, + "mode": "number", + "delay": "300", + "topic": "sample_dilution_factor", + "sendOnBlur": true, + "className": "", + "topicType": "str", + "x": 640, + "y": 480, + "wires": [ + [ + "9f501f49.45645" + ] + ] + }, + { + "id": "4f6afc5a.81e454", + "type": "ui_text_input", + "z": "b771c342.49603", + "name": "sample_total_volume", + "label": "Filtered volume (in L)", + "tooltip": "Calculated or hand filled", + "group": "3e1ba03d.f01d8", + "order": 11, + "width": 0, + "height": 0, + "passthru": true, + "mode": "text", + "delay": "300", + "topic": "sample_total_volume", + "sendOnBlur": true, + "className": "", + "topicType": "str", + "x": 1220, + "y": 760, + "wires": [ + [ + "e1f2f6eb.fe1dd" + ] + ] + }, + { + "id": "e1f2f6eb.fe1dd", + "type": "function", + "z": "b771c342.49603", + "name": "set global", + "func": "global.set(msg.topic,msg.payload);", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "x": 1420, + "y": 760, + "wires": [ + [] + ] + }, + { + "id": "e9bc112c.eb75f8", + "type": "function", + "z": "b771c342.49603", + "name": "Calculate volume", + "func": "if (msg.topic == \"sample_total_flowmeter_start\"){\n context.set(\"sample_total_flowmeter_start\", msg.payload);\n}\nif (msg.topic == \"sample_total_flowmeter_end\"){\n context.set(\"sample_total_flowmeter_end\", msg.payload);\n}\n\nif (context.keys().length == 2){\n sample_total_volume = context.get(\"sample_total_flowmeter_end\") - context.get(\"sample_total_flowmeter_start\");\n msg.topic=\"sample_total_volume\"\n msg.payload=sample_total_volume\n return msg\n}\n", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "x": 1610, + "y": 240, + "wires": [ + [ + "4f6afc5a.81e454" + ] + ] + }, + { + "id": "cdd4181922eecf11", + "type": "ui_text_input", + "z": "b771c342.49603", + "name": "sample_speed_through_water", + "label": "Speed Through Water (kts)", + "tooltip": "in knots", + "group": "cf5d9f0e.d57e7", + "order": 2, + "width": 10, + "height": 1, + "passthru": true, + "mode": "number", + "delay": "300", + "topic": "sample_speed_through_water", + "sendOnBlur": true, + "className": "", + "topicType": "str", + "x": 610, + "y": 520, + "wires": [ + [ + "9f501f49.45645" + ] + ] + }, + { + "id": "1aad56b31b5647ce", + "type": "ui_text_input", + "z": "b771c342.49603", + "name": "acq_minimum_mesh", + "label": "Minimal fraction size (μm)", + "tooltip": "Net mesh pore size or minimal filtration mesh pore size", + "group": "3e1ba03d.f01d8", + "order": 7, + "width": 5, + "height": 1, + "passthru": true, + "mode": "number", + "delay": "300", + "topic": "acq_minimum_mesh", + "sendOnBlur": true, + "className": "", + "topicType": "str", + "x": 640, + "y": 360, + "wires": [ + [ + "9f501f49.45645" + ] + ] + }, + { + "id": "10eb31a2d7a6590c", + "type": "ui_text_input", + "z": "b771c342.49603", + "name": "acq_maximum_mesh", + "label": "Maximal fraction size (μm)", + "tooltip": "Maximal filtration mesh pore size", + "group": "3e1ba03d.f01d8", + "order": 8, + "width": 5, + "height": 1, + "passthru": true, + "mode": "number", + "delay": "300", + "topic": "acq_maximum_mesh", + "sendOnBlur": true, + "className": "", + "topicType": "str", + "x": 640, + "y": 400, + "wires": [ + [ + "9f501f49.45645" + ] + ] + }, + { + "id": "3ac7b631f5d8ef90", + "type": "function", + "z": "b771c342.49603", + "name": "Culture check", + "func": "var activation_msg = {}\nvar date_msg = {}\nvar timestamp=new Date().toISOString();\n\nif (msg.payload === \"culture\"){\n activation_msg.payload = {\"group\":{\"show\":[\"Sample_Culture_Date_and_Time\"],\"hide\":[\"Sample_Sample_Location\", \"Sample_Net_Metadata\"]}};\n global.set(\"object_lat\", \"-90.0000\")\n global.set(\"object_lon\", \"0.0000\")\n date_msg.payload = {\"object_date\": timestamp.split('T')[0],\n \"object_time\": timestamp.split('T')[1].split('.')[0]}\n return [activation_msg, date_msg];\n}\nelse if (msg.payload === \"test\"){\n activation_msg.payload = {\"group\":{\"hide\":[\"Sample_Culture_Date_and_Time\", \"Sample_Sample_Location\", \"Sample_Net_Metadata\"]}};\n global.set(\"object_lat\", \"-90.0000\")\n global.set(\"object_lon\", \"0.0000\")\n global.set(\"object_date\", timestamp.split('T')[0])\n global.set(\"object_time\", timestamp.split('T')[1].split('.')[0])\n return [activation_msg, null];\n}\nelse{\n return [null, null]\n}\n\n", + "outputs": 2, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 1100, + "y": 320, + "wires": [ + [ + "cbb123ab.fd3428" + ], + [ + "05c6aff2afbd69cf" + ] + ], + "outputLabels": [ + "decknet activation", + "" + ] + }, + { + "id": "05c6aff2afbd69cf", + "type": "ui_form", + "z": "b771c342.49603", + "name": "culture_timestamp", + "label": "Culture timestamp", + "group": "7bc0a4c416e4545c", + "order": 1, + "width": 0, + "height": 0, + "options": [ + { + "label": "Date (YYYY-MM-DD, UTC)", + "value": "object_date", + "type": "text", + "required": true, + "rows": null + }, + { + "label": "Time (HH:MM(:SS), UTC 24h)", + "value": "object_time", + "type": "text", + "required": true, + "rows": null + } + ], + "formValue": { + "object_date": "", + "object_time": "" + }, + "payload": "", + "submit": "Validate", + "cancel": "Reset", + "topic": "culture_timestamp", + 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input fields", + "rules": [ + { + "t": "set", + "p": "payload", + "pt": "msg", + "to": "payload", + "tot": "msg" + } + ], + "action": "", + "property": "", + "from": "", + "to": "", + "reg": false, + "x": 400, + "y": 660, + "wires": [ + [ + "56d40584.eff4e4" + ] + ] + }, + { + "id": "f8044c35996322e6", + "type": "change", + "z": "b771c342.49603", + "name": "Repopulate input fields", + "rules": [ + { + "t": "set", + "p": "payload", + "pt": "msg", + "to": "payload", + "tot": "msg" + } + ], + "action": "", + "property": "", + "from": "", + "to": "", + "reg": false, + "x": 400, + "y": 700, + "wires": [ + [ + "05c6aff2afbd69cf" + ] + ] + }, + { + "id": "8b48a02877b7b6d6", + "type": "inject", + "z": "b771c342.49603", + "name": "", + "props": [ + { + "p": "payload" + } + ], + "repeat": "", + "crontab": "", + "once": true, + "onceDelay": 0.1, + "topic": "", + "payload": "1", + "payloadType": "num", + "x": 270, + "y": 480, + "wires": [ + [ + "58de1340.3cc354" + ] + ] + }, + { + "id": 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"wires": [ + [ + "6c792043.b6ff9" + ] + ] + }, + { + "id": "9ba6ec0a.22c96", + "type": "ui_button", + "z": "bccd1f23.87219", + "name": "", + "group": "7a0b4877.a5d268", + "order": 2, + "width": 2, + "height": 1, + "passthru": false, + "label": "Continue", + "tooltip": "", + "color": "#097479", + "bgcolor": "white", + "icon": "keyboard_tab", + "payload": "{\"tab\":\"Home\"}", + "payloadType": "json", + "topic": "", + "x": 140, + "y": 1180, + "wires": [ + [ + "fe840e05.b46f3" + ] + ] + }, + { + "id": "3cb96380.e575ec", + "type": "function", + "z": "bccd1f23.87219", + "name": "pump", + "func": "var manual_volume= global.get(\"pump_manual_volume\");\nvar flowrate= global.get(\"pump_flowrate\");\n\nif (manual_volume === undefined || manual_volume === \"\" || manual_volume === null) {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Volume to pass\";\n return [null, msg];\n}\nelse if (flowrate === undefined || flowrate === \"\" || flowrate === null) {\n msg.topic = \"Missing entry :\"\n 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\n \n \n \n \n \n \n \n \n \n
\n

Sample

\n

id:

\n

project:\n

\n

ship:

\n

operator:\n

\n

sampling gear:\n

\n

concentrated volume:\n

\n

gear net opening:\n

\n

total volume filtered:\n

\n 		\n

Acquisition

\n

id:

\n

instrument:\n

\n

instrument id:\n

\n

camera:

\n

celltype: \n

\n

minimum mesh:\n

\n

maximum mesh:\n

\n

min esd: \n

\n

max esd: \n

\n

volume:

\n

magnification:\n

\n

fnumber objective:\n

\n

software: \n

\n
\n

Object

\n

latitude: \n

\n

longitude: \n

\n

latitude end:\n

\n

longitude end:\n

\n

date:

\n

time:

\n

date end:\n

\n

time end:\n

\n

depth min:\n

\n

depth max:\n

\n 		\n

Process

\n

pixel: \n

\n

id:

\n
\n
", + "storeOutMessages": false, + "fwdInMessages": false, + "resendOnRefresh": false, + "templateScope": "local", + "className": "", + "x": 1160, + "y": 380, + "wires": [ + [] + ] + }, + { + "id": "c9f510c0.7d1328", + "type": "function", + "z": "baa1e3d9.cb29d", + "name": "Image control", + "func": "// Reset the number of images taken\nflow.set('img_counter', 0);\n\nvar acq_celltype = global.get(\"acq_celltype\");\nvar acq_minimum_mesh = global.get(\"acq_minimum_mesh\");\nvar acq_maximum_mesh = global.get(\"acq_maximum_mesh\");\nvar imaging_pump_volume = global.get(\"imaging_pump_volume\");\nvar acq_id = global.get(\"acq_id\");\nvar nb_frame = global.get(\"nb_frame\");\nvar pump_direction = global.get(\"pump_direction\");\nvar sleep_before = global.get(\"sleep_before\");\nvar object_date = global.get(\"object_date\");\n\nif (acq_celltype === undefined || acq_celltype === \"\") {\n msg.topic = \"Missing entry :\";\n msg.payload = \"Type of the flowcell\";\n return [null, msg];\n} else if (acq_minimum_mesh === undefined || acq_minimum_mesh === \"\") {\n msg.topic = \"Missing entry :\";\n msg.payload = \"Lower fraction size\";\n return [null, msg];\n} else if (acq_maximum_mesh === undefined || acq_maximum_mesh === \"\") {\n msg.topic = \"Missing entry :\";\n msg.payload = \"Upper fraction size\";\n return [null, msg];\n} else if (imaging_pump_volume === undefined || imaging_pump_volume === \"\" || imaging_pump_volume === null) {\n msg.topic = \"Missing entry :\";\n msg.payload = \"Volume inbetween images\";\n return [null, msg];\n} else if (acq_id === undefined || acq_id === \"\") {\n msg.topic = \"Missing entry :\";\n msg.payload = \"Acquisition ID\";\n return [null, msg];\n} else if (nb_frame === undefined || nb_frame === \"\" || nb_frame === null) {\n msg.topic = \"Missing entry :\";\n msg.payload = \"Number of image to save\";\n return [null, msg];\n} else if (pump_direction === undefined || pump_direction === \"\" || pump_direction === null) {\n msg.topic = \"Missing entry :\";\n msg.payload = \"Pump direction\";\n return [null, msg];\n} else if (sleep_before === undefined || sleep_before === \"\" || sleep_before === null) {\n msg.topic = \"Missing entry :\";\n msg.payload = \"Delay before image\";\n return [null, msg];\n}else if (object_date === undefined || object_date === \"\" || object_date === null) {\n msg.topic = \"Missing entry :\";\n msg.payload = \"Object date\";\n return [null, msg];\n}\n\nmsg.payload = {\n \"action\": \"image\",\n \"sleep\": sleep_before,\n \"pump_direction\": pump_direction,\n \"volume\": imaging_pump_volume,\n \"nb_frame\": nb_frame,\n}\nmsg.send = true\n\nreturn [msg, null];", + "outputs": 2, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 640, + "y": 440, + "wires": [ + [ + "52ea7d01.711034", + "40c12463.a1f84c", + "a4abb1ae.2ae418" + ], + [ + "20e0a8c8.edbeb" + ] + ] + }, + { + "id": "20e0a8c8.edbeb", + "type": "ui_toast", + "z": "baa1e3d9.cb29d", + "position": "dialog", + "displayTime": "3", + "highlight": "", + "sendall": true, + "outputs": 1, + "ok": "OK", + "cancel": "", + "raw": false, + "topic": "", + "name": "", + "x": 890, + "y": 520, + "wires": [ + [] + ] + }, + { + "id": "c3e50240.82aa58", + "type": "mqtt out", + "z": "baa1e3d9.cb29d", + "name": "", + "topic": "", + "qos": "", + "retain": "", + "broker": "8dc3722c.06efa8", + "x": 1130, + "y": 420, + "wires": [] + }, + { + "id": "3a4450b1.4459a8", + "type": "ui_button", + "z": "baa1e3d9.cb29d", + "name": "Stop Acquisition", + "group": "4322c187.e73e5", + "order": 11, + "width": 5, + "height": 1, + "passthru": true, + "label": "STOP ACQUISITION", + "tooltip": "", + "color": "", + "bgcolor": "#AD1625", + "icon": "cancel", + "payload": "{\"action\":\"stop\"}", + "payloadType": "json", + "topic": "imager/image", + "x": 420, + "y": 480, + "wires": [ + [ + "d74210ef.edc15" + ] + ] + }, + { + "id": "d74210ef.edc15", + "type": "mqtt out", + "z": "baa1e3d9.cb29d", + "name": "", + "topic": "", + "qos": "", + "retain": "", + "broker": "8dc3722c.06efa8", + "x": 610, + "y": 480, + "wires": [] + }, + { + "id": "bb62da8a.ebc328", + "type": "ui_switch", + "z": "baa1e3d9.cb29d", + "name": "Pump direction", + "label": "Pump direction", + "tooltip": "BACKWARD / FORWARD", + "group": "4322c187.e73e5", + "order": 9, + "width": 5, + "height": 1, + "passthru": true, + "decouple": "false", + "topic": "pump_direction", + "style": "", + "onvalue": "FORWARD", + "onvalueType": "str", + "onicon": "", + "oncolor": "", + "offvalue": "BACKWARD", + "offvalueType": "str", + "officon": "", + "offcolor": "", + "x": 420, + "y": 520, + "wires": [ + [ + "6b2239f3.41fa3" + ] + ] + }, + { + "id": "52ea7d01.711034", + "type": "function", + "z": "baa1e3d9.cb29d", + "name": "Encapsulate config", + "func": "msg.payload = {\n\t\"action\": \"update_config\",\n\t\"config\": {\n \t\"description\": {\n \t\t\"sample_project\": \"Project's name\",\n \t\t\"sample_id\": \"Sample ID\",\n \t\t\"sample_uuid\": \"Sample UUID (Autogenerated)\",\n \t\t\"sample_ship\": \"Ship's name\",\n \t\t\"sample_operator\": \"Operator's name\",\n \t\t\"sample_sampling_gear\": \"Sampling gear used\",\n \t\t\"sample_concentrated_sample_volume\": \"Volume of concentrated sample, in mL\",\n \t\t\"sample_total_volume\": \"Total volume filtered by the net used, in L\",\n \t\t\"sample_dilution_factor\": \"Dilution factor of the sample, 0.5 if diluted by 2, 2 if concentrated by 2\",\n \t\t\"sample_speed_through_water\": \"Speed of the boat through water when sampling, in kts\",\n \t\t\"acq_id\": \"Acquisition ID\",\n \t\t\"acq_uuid\": \"Acquisition UUID (Autogenerated)\",\n \t\t\"acq_instrument\": \"Instrument type\",\n \t\t\"acq_instrument_id\": \"Instrument ID\",\n \t\t\"acq_celltype\": \"Flow cell dimension thickness, in µm\",\n \t\t\"acq_minimum_mesh\": \"Minimum filtration mesh size, in µm\",\n \t\t\"acq_maximum_mesh\": \"Maximum filtration mesh size, in µm\",\n \t\t\"acq_min_esd\": \"\",\n \t\t\"acq_max_esd\": \"\",\n \t\t\"acq_volume\": \"Pumped volume, in mL\",\n\t\t \"acq_imaged_volume\": \"Total imaged volume, in mL\",\n \t\t\"acq_magnification\": \"Optical magnification\",\n \t\t\"acq_fnumber_objective\": \"Focal length of the objective, in mm\",\n \t\t\"acq_camera_name\": \"Name of the camera used\",\n \t\t\"acq_nb_frame\": \"Number of picture taken\",\n \"acq_local_datetime\": \"Instrument local datetime\",\n \"acq_camera_resolution\": \"Resolution of the images\",\n \"acq_camera_iso\": \"ISO Number of the images\",\n \"acq_camera_shutter_speed\": \"Shutter speed of the images, in µs\",\n \"acq_software\": \"Software version number\",\n \t\t\"object_date\": \"Sample collection date (or beginning if using a net)\",\n \t\t\"object_time\": \"Sample collection time (or beginning if using a net)\",\n \t\t\"object_lat\": \"Sample collection latitude (or beginning if using a net)\",\n \t\t\"object_lon\": \"Sample collection longitude (or beginning if using a net)\",\n \t\t\"object_depth_min\": \"Sample collection minimal depth, in m\",\n \t\t\"object_depth_max\": \"Sample collection maximum depth, in m\",\n \t\t\"process_pixel\": \"Pixel imaging resolution, in µm/pixel\",\n \t\t\"process_datetime\": \"Segmentation timestamp\",\n \t\t\"process_id\": \"Segmentation ID\",\n \t\t\"process_uuid\": \"Segmentation UUID (Autogenerated)\",\n \t\t\"process_source\": \"Code source link of the executed code\",\n \t\t\"process_commit\": \"Version reference of the executed code\",\n \t\t\"sample_gear_net_opening\": \"Sample mouth opening dimension, in mm\",\n \t\t\"object_date_end\": \"Sample end collection date when using a net\",\n \t\t\"object_time_end\": \"Sample end collection time when using a net\",\n \t\t\"object_lat_end\": \"Sample end collection latitude when using a net\",\n \t\t\"object_lon_end\": \"Sample end collection longitude when using a net\",\n \t},\n\t\t\"sample_project\": global.get(\"sample_project\"),\n\t\t\"sample_id\": global.get(\"sample_project\") + \"_\" + global.get(\"sample_id\"),\n\t\t\"sample_ship\": global.get(\"sample_ship\"),\n\t\t\"sample_operator\": global.get(\"sample_operator\"),\n\t\t\"sample_sampling_gear\": global.get(\"sample_sampling_gear\"),\n\t\t\"sample_concentrated_sample_volume\": global.get(\"sample_concentrated_sample_volume\"),\n\t\t\"sample_total_volume\": global.get(\"sample_total_volume\"),\n\t\t\"sample_dilution_factor\": global.get(\"sample_dilution_factor\"),\n\t\t\"sample_speed_through_water\": global.get(\"sample_speed_through_water\"),\n\n\t\t\"acq_id\": global.get(\"sample_project\") + \"_\" + global.get(\"sample_id\")+ \"_\" + global.get(\"acq_id\"),\n\t\t\"acq_instrument\": global.get(\"acq_instrument\"),\n\t\t\"acq_instrument_id\": global.get(\"acq_instrument_id\"),\n\t\t\"acq_celltype\": global.get(\"acq_celltype\"),\n\t\t\"acq_minimum_mesh\": global.get(\"acq_minimum_mesh\"),\n\t\t\"acq_maximum_mesh\": global.get(\"acq_maximum_mesh\"),\n\t\t\"acq_min_esd\": global.get(\"acq_min_esd\"),\n\t\t\"acq_max_esd\": global.get(\"acq_max_esd\"),\n\t\t\"acq_volume\": global.get(\"acq_volume\"),\n\t\t\"acq_imaged_volume\": global.get(\"acq_imaged_volume\"),\n\t\t\"acq_magnification\": global.get(\"acq_magnification\"),\n\t\t\"acq_fnumber_objective\": global.get(\"acq_fnumber_objective\"),\n\t\t\"acq_camera\": global.get(\"acq_camera\"),\n\t\t\"acq_nb_frame\": global.get(\"nb_frame\"),\n\t\t\"acq_software\": global.get(\"acq_software\"),\n\n\t\t\"object_date\": global.get(\"object_date\"),\n\t\t\"object_time\": global.get(\"object_time\"),\n\t\t\"object_lat\": global.get(\"object_lat\"),\n\t\t\"object_lon\": global.get(\"object_lon\"),\n\t\t\"object_depth_min\": global.get(\"object_depth_min\"),\n\t\t\"object_depth_max\": global.get(\"object_depth_max\"),\n\n\t\t\"process_pixel\": global.get(\"process_pixel\"),\n\t\t\"process_source\": global.get(\"process_source\"),\n\t\t\"process_commit\": global.get(\"process_commit\")\n\t}\n};\n\nif (msg.payload.config.sample_sampling_gear.startsWith(\"net\")) {\n\tmsg.payload.config[\"sample_gear_net_opening\"] = global.get(\"sample_gear_net_opening\")\n\tmsg.payload.config[\"object_date_end\"] = global.get(\"object_date_end\")\n\tmsg.payload.config[\"object_time_end\"] = global.get(\"object_time_end\")\n\tmsg.payload.config[\"object_lat_end\"] = global.get(\"object_lat_end\")\n\tmsg.payload.config[\"object_lon_end\"] = global.get(\"object_lon_end\")\n}\n\nif ( msg.send == true){\n\treturn [msg, msg]\n}\nelse{\n\treturn [msg, null]\n}", + "outputs": 2, + "timeout": "", + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 870, + "y": 400, + "wires": [ + [ + "29be525e.0c87fe" + ], + [ + "c3e50240.82aa58" + ] + ] + }, + { + "id": "40c12463.a1f84c", + "type": "delay", + "z": "baa1e3d9.cb29d", + "name": "", + "pauseType": "delay", + "timeout": "1", + "timeoutUnits": "seconds", + "rate": "1", + "nbRateUnits": "1", + "rateUnits": "second", + "randomFirst": "1", + "randomLast": "5", + "randomUnits": "seconds", + "drop": false, + "outputs": 1, + "x": 900, + "y": 440, + "wires": [ + [ + "c3e50240.82aa58" + ] + ] + }, + { + "id": "4d1b02cb.83b51c", + "type": "ui_button", + "z": "baa1e3d9.cb29d", + "name": "", + "group": "4322c187.e73e5", + "order": 10, + "width": 5, + "height": 1, + "passthru": false, + "label": "Update config", + "tooltip": "", + "color": "", + "bgcolor": "", + "className": "", + "icon": "save", + "payload": "", + "payloadType": "str", + "topic": "imager/image", + "topicType": "str", + "x": 420, + "y": 400, + "wires": [ + [ + "52ea7d01.711034" + ] + ] + }, + { + "id": "5921d0d0.a3d568", + "type": "subflow:1c24ad9c.bebec2", + "z": "baa1e3d9.cb29d", + "name": "", + "env": [], + "x": 110, + "y": 180, + "wires": [ + [ + "f3658d30.b8448", + "de2c90cf.b73b08", + "4be09c97f86897d9", + "f573206abefa9518", + "f948151ab4031df4" + ] + ] + }, + { + "id": "f3658d30.b8448", + "type": "function", + "z": "baa1e3d9.cb29d", + "name": "get acq_id", + "func": "msg.payload = msg.payload.acq_id;\nreturn msg;", + "outputs": 1, + "timeout": "", + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 330, + "y": 180, + "wires": [ + [ + "6b34c456.83178c" + ] + ] + }, + { + "id": "de2c90cf.b73b08", + "type": "function", + "z": "baa1e3d9.cb29d", + "name": "get acq_celltype", + "func": "msg.topic = 'acq_celltype';\nmsg.payload = msg.payload.acq_celltype;\nreturn msg;", + "outputs": 1, + "timeout": "", + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 340, + "y": 100, + "wires": [ + [ + "cc0ca68b.4263a8" + ] + ] + }, + { + "id": "b402f719.55bc98", + "type": "inject", + "z": "baa1e3d9.cb29d", + "name": "Default: FORWARD", + "props": [ + { + "p": "payload" + }, + { + "p": "topic", + "vt": "str" + } + ], + "repeat": "", + "crontab": "", + "once": true, + "onceDelay": 0.1, + "topic": "pump_direction", + "payload": "FORWARD", + "payloadType": "str", + "x": 180, + "y": 520, + "wires": [ + [ + "bb62da8a.ebc328" + ] + ] + }, + { + "id": "6b2239f3.41fa3", + "type": "function", + "z": "baa1e3d9.cb29d", + "name": "set global", + "func": "global.set(msg.topic, msg.payload);", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "x": 620, + "y": 520, + "wires": [ + [] + ] + }, + { + "id": "51b4d0df.d70a88", + "type": "ui_text_input", + "z": "baa1e3d9.cb29d", + "name": "nb_frame", + "label": "Number of images to acquire", + "tooltip": "", + "group": "4322c187.e73e5", + "order": 2, + "width": 5, + "height": 1, + "passthru": true, + "mode": "number", + "delay": 300, + "topic": "nb_frame", + "sendOnBlur": true, + "className": "", + "topicType": "str", + "x": 680, + "y": 220, + "wires": [ + [ + "fb887036.12429", + "67091ac0.8f9f6c", + "99b11fe4.2795d" + ] + ] + }, + { + "id": "999065ca.27edb8", + "type": "switch", + "z": "baa1e3d9.cb29d", + "name": "topic filter", + "property": "topic", + "propertyType": "msg", + "rules": [ + { + "t": "eq", + "v": "status/pump", + "vt": "str" + }, + { + "t": "eq", + "v": "status/focus", + "vt": "str" + }, + { + "t": "eq", + "v": "status/light", + "vt": "str" + }, + { + "t": "eq", + "v": "status/imager", + "vt": "str" + } + ], + "checkall": "true", + "repair": false, + "outputs": 4, + "x": 320, + "y": 800, + "wires": [ + [ + "a46a1e7f.88a92", + "6742014e.1bb238" + ], + [ + "c516d9ea.f7f6e", + "6742014e.1bb238" + ], + [ + "6742014e.1bb238" + ], + [ + "307c851e.fb0f7a", + "2b9d6988.d84836" + ] + ] + }, + { + "id": "2b009bd7.c07004", + "type": "ui_text", + "z": "baa1e3d9.cb29d", + "group": "70de8209.68416c", + "order": 3, + "width": 10, + "height": 2, + "name": "imager", + "label": "Imager status:", + "format": "{{msg.payload.status}}", + "layout": "col-center", + "x": 770, + "y": 740, + "wires": [] + }, + { + "id": "c516d9ea.f7f6e", + "type": "ui_text", + "z": "baa1e3d9.cb29d", + "group": "70de8209.68416c", + "order": 1, + "width": 5, + "height": 1, + "name": "focus", + "label": "Focus status:", + "format": "{{msg.payload.status}}", + "layout": "col-center", + "x": 770, + "y": 700, + "wires": [] + }, + { + "id": "a46a1e7f.88a92", + "type": "ui_text", + "z": "baa1e3d9.cb29d", + "group": "70de8209.68416c", + "order": 2, + "width": 5, + "height": 1, + "name": "pump", + "label": "Pump status:", + "format": "{{msg.payload.status}}", + "layout": "col-center", + "x": 770, + "y": 660, + "wires": [] + }, + { + "id": "bb628f8d.98f108", + "type": "link in", + "z": "baa1e3d9.cb29d", + "name": "Status for fluidic module", + "links": [ + "58f2e0f.4e8b12" + ], + "x": 175, + "y": 800, + "wires": [ + [ + "999065ca.27edb8" + ] + ] + }, + { + "id": "307c851e.fb0f7a", + "type": "switch", + "z": "baa1e3d9.cb29d", + "name": "Imaging state", + "property": "payload", + "propertyType": "msg", + "rules": [ + { + "t": "jsonata_exp", + "v": "$contains(msg.payload.status, \"jpg\")\t", + "vt": "jsonata" + }, + { + "t": "else" + } + ], + "checkall": "false", + "repair": false, + "outputs": 2, + "x": 540, + "y": 880, + "wires": [ + [ + "db8e3dde.44efb8" + ], + [ + "6742014e.1bb238" + ] + ] + }, + { + "id": "db8e3dde.44efb8", + "type": "function", + "z": "baa1e3d9.cb29d", + "name": "img_counter", + "func": "img_counter=flow.get('img_counter')\nif (img_counter === undefined || img_counter === \"\"){\n img_counter = 0\n}\nimg_counter=img_counter+1\nflow.set('img_counter',img_counter)\nmsg.payload = img_counter\nmsg.payload = (100 * img_counter/global.get('nb_frame')).toFixed(2)\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 770, + "y": 860, + "wires": [ + [ + "1a2e721a.f5e876" + ] + ] + }, + { + "id": "59164d65.e7993c", + "type": "ui_toast", + "z": "baa1e3d9.cb29d", + "position": "top right", + "displayTime": "5", + "highlight": "", + "sendall": true, + "outputs": 0, + "ok": "OK", + "cancel": "", + "raw": false, + "topic": "", + "name": "", + "x": 1270, + "y": 900, + "wires": [] + }, + { + "id": "8c7348aa.1962e8", + "type": "template", + "z": "baa1e3d9.cb29d", + "name": "Create sentence", + "field": "payload", + "fieldType": "msg", + "format": "handlebars", + "syntax": "mustache", + "template": "The {{topic}} is {{payload.status}}", + "output": "str", + "x": 1050, + "y": 900, + "wires": [ + [ + "59164d65.e7993c" + ] + ] + }, + { + "id": "6742014e.1bb238", + "type": "change", + "z": "baa1e3d9.cb29d", + "name": "Remove high-level topic", + "rules": [ + { + "t": "change", + "p": "topic", + "pt": "msg", + "from": "status/", + "fromt": "str", + "to": "", + "tot": "str" + } + ], + "action": "", + "property": "", + "from": "", + "to": "", + "reg": false, + "x": 810, + "y": 900, + "wires": [ + [ + "8c7348aa.1962e8" + ] + ] + }, + { + "id": "1a2e721a.f5e876", + "type": "ui_gauge", + "z": "baa1e3d9.cb29d", + "name": "progress donut", + "group": "b5d61bc7.54fe48", + "order": 3, + "width": 6, + "height": 3, + "gtype": "donut", + "title": "", + "label": "%", + "format": "{{value}}", + "min": 0, + "max": "100", + "colors": [ + "#ffa83f", + "#e6ff02", + "#00dfe9" + ], + "seg1": "50", + "seg2": "75", + "x": 1260, + "y": 860, + "wires": [] + }, + { + "id": "9bd72495.a8a098", + "type": "ui_text", + "z": "baa1e3d9.cb29d", + "group": "4322c187.e73e5", + "order": 5, + "width": 5, + "height": 1, + "name": "Total imaged volume", + "label": "Total imaged volume", + "format": "{{msg.payload}}", + "layout": "col-center", + "x": 1200, + "y": 100, + "wires": [] + }, + { + "id": "99b11fe4.2795d", + "type": "function", + "z": "baa1e3d9.cb29d", + "name": "imaged volume calc", + "func": "camera = global.get(\"acq_camera\");\ncell = global.get(\"acq_celltype\");\nnb_frame = global.get(\"nb_frame\");\nprocess_pixel = global.get(\"process_pixel\");\n\nvar volume = 0\nif (camera == \"HQ Camera\"){\n volume = nb_frame * (process_pixel*4056*process_pixel*3040*cell/1000000000) / 1000;\n}\nelse if (camera == \"Camera v2.1\"){\n volume = nb_frame * (process_pixel*3280*process_pixel*2464*cell/1000000000) / 1000;\n}\nelse{\n msg.payload = \"The camera is not known to this system\";\n return msg;\n}\n\nglobal.set(\"acq_imaged_volume\", volume.toFixed(4))\n\nmsg.payload = volume.toFixed(2) + \" mL\"\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 960, + "y": 100, + "wires": [ + [ + "9bd72495.a8a098" + ] + ], + "info": "### Focusing\n##### focus.py `nb_step` `orientation`\n\n- `nb_step` : **integer** (from 1 to 100000) - number of step to perform by the stage (about 31um/step)\n- `orientation` : **string** - orientation of the focus either `up` or `down`\n\nExample:\n\n python3.7 $HOME/PlanktoScope/scripts/focus.py 650 up\n" + }, + { + "id": "8e16aa2f.e40398", + "type": "ui_text", + "z": "baa1e3d9.cb29d", + "group": "4322c187.e73e5", + "order": 7, + "width": 5, + "height": 1, + "name": "Total pumped volume", + "label": "Total pumped volume", + "format": "{{msg.payload}} mL", + "layout": "col-center", + "x": 1200, + "y": 260, + "wires": [] + }, + { + "id": "67091ac0.8f9f6c", + "type": "function", + "z": "baa1e3d9.cb29d", + "name": "acq_volume calc", + "func": "var imaging_pump_volume = global.get(\"imaging_pump_volume\");\nvar nb_frame = global.get(\"nb_frame\");\nvar acq_volume = 0\n\nacq_volume = (Number(nb_frame)*Number(imaging_pump_volume)).toFixed(2)\nglobal.set(\"acq_volume\", acq_volume)\n\nmsg.payload = acq_volume\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "x": 950, + "y": 260, + "wires": [ + [ + "8e16aa2f.e40398" + ] + ], + "info": "### Focusing\n##### focus.py `nb_step` `orientation`\n\n- `nb_step` : **integer** (from 1 to 100000) - number of step to perform by the stage (about 31um/step)\n- `orientation` : **string** - orientation of the focus either `up` or `down`\n\nExample:\n\n python3.7 $HOME/PlanktoScope/scripts/focus.py 650 up\n" + }, + { + "id": "2b9d6988.d84836", + "type": "switch", + "z": "baa1e3d9.cb29d", + "name": "", + "property": "payload", + "propertyType": "msg", + "rules": [ + { + "t": "hask", + "v": "status", + "vt": "str" + }, + { + "t": "hask", + "v": "camera_name", + "vt": "str" + } + ], + "checkall": "true", + "repair": false, + "outputs": 2, + "x": 650, + "y": 760, + "wires": [ + [ + "2b009bd7.c07004" + ], + [ + "3bbb756a.84190a" + ] + ] + }, + { + "id": "3bbb756a.84190a", + "type": "function", + "z": "baa1e3d9.cb29d", + "name": "set camera name", + "func": "global.set(\"acq_camera\", msg.payload.camera_name);\n\nmsg.payload = msg.payload.camera_name;\n\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "x": 810, + "y": 780, + "wires": [ + [ + "559a8085.1d6b9" + ] + ] + }, + { + "id": "559a8085.1d6b9", + "type": "link out", + "z": "baa1e3d9.cb29d", + "name": "Camera Name", + "links": [ + "30067f35.532f2", + "572a6daa.6004c4" + ], + "x": 965, + "y": 780, + "wires": [] + }, + { + "id": "49ea1123.ee1768", + "type": "ui_numeric", + "z": "baa1e3d9.cb29d", + "name": "sleep_before", + "label": "Delay to stabilize image (s)", + "tooltip": "Happens before every capture", + "group": "4322c187.e73e5", + "order": 4, + "width": 5, + "height": 1, + "wrap": false, + "passthru": true, + "topic": "sleep_before", + "topicType": "str", + "format": "{{value}}", + "min": "0.1", + "max": "5", + "step": "0.1", + "className": "", + "x": 670, + "y": 140, + "wires": [ + [ + "fb887036.12429" + ] + ] + }, + { + "id": "572a6daa.6004c4", + "type": "link in", + "z": "baa1e3d9.cb29d", + "name": "", + "links": [ + "559a8085.1d6b9" + ], + "x": 735, + "y": 60, + "wires": [ + [ + "99b11fe4.2795d" + ] + ] + }, + { + "id": "8032ea50.1b57f", + "type": "ui_template", + "z": "baa1e3d9.cb29d", + "group": "b5d61bc7.54fe48", + "name": "progress header", + "order": 1, + "width": 0, + "height": 0, + "format": "

Capture progress

", + "storeOutMessages": false, + "fwdInMessages": false, + "resendOnRefresh": false, + "templateScope": "local", + "x": 1270, + "y": 820, + "wires": [ + [] + ] + }, + { + "id": "a4abb1ae.2ae418", + "type": "subflow:1c24ad9c.bebec2", + "z": "baa1e3d9.cb29d", + "name": "", + "env": [], + "x": 890, + "y": 480, + "wires": [ + [] + ] + }, + { + "id": "4be09c97f86897d9", + "type": "function", + "z": "baa1e3d9.cb29d", + "name": "get nb_frame", + "func": "msg.payload = msg.payload.nb_frame;\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 330, + "y": 220, + "wires": [ + [ + "51b4d0df.d70a88" + ] + ] + }, + { + "id": "f573206abefa9518", + "type": "function", + "z": "baa1e3d9.cb29d", + "name": "get imaging_pump_volume", + "func": "msg.payload = msg.payload.imaging_pump_volume;\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 380, + "y": 260, + "wires": [ + [ + "0df8d1d86af6455a" + ] + ] + }, + { + "id": "f948151ab4031df4", + "type": "function", + "z": "baa1e3d9.cb29d", + "name": "get sleep_before", + "func": "msg.payload = msg.payload.sleep_before;\nreturn msg;", + "outputs": 1, + "timeout": "", + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 340, + "y": 140, + "wires": [ + [ + "49ea1123.ee1768" + ] + ] + }, + { + "id": "ad153212312f0347", + "type": "ui_ui_control", + "z": "baa1e3d9.cb29d", + "name": "onTab", + "events": "all", + "x": 310, + "y": 340, + "wires": [ + [ + "9b69ea945b587192" + ] + ] + }, + { + "id": "9b69ea945b587192", + "type": "function", + "z": "baa1e3d9.cb29d", + "name": "check tab", + "func": "if (msg.name == \"Fluidic Acquisition\"){\n return { \"topic\": \"imager/ image\" }\n}", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 460, + "y": 340, + "wires": [ + [ + "52ea7d01.711034" + ] + ], + "outputLabels": [ + "interface" + ] + }, + { + "id": "0df8d1d86af6455a", + "type": "ui_text_input", + "z": "baa1e3d9.cb29d", + "name": "imaging_pump_volume", + "label": "Pumped volume (mL)", + "tooltip": "between frames", + "group": "4322c187.e73e5", + "order": 3, + "width": 0, + "height": 0, + "passthru": true, + "mode": "number", + "delay": 300, + "topic": "imaging_pump_volume", + "sendOnBlur": true, + "className": "", + "topicType": "str", + "x": 630, + "y": 260, + "wires": [ + [ + "fb887036.12429", + "67091ac0.8f9f6c" + ] + ] + }, + { + "id": "37116281279b9b82", + "type": "ui_template", + "z": "baa1e3d9.cb29d", + "group": "4322c187.e73e5", + "name": "Start Acquisition", + "order": 12, + "width": "5", + "height": "1", + "format": "\n\n", + "storeOutMessages": false, + "fwdInMessages": false, + "resendOnRefresh": false, + "templateScope": "local", + "className": "", + "x": 420, + "y": 440, + "wires": [ + [ + "c9f510c0.7d1328" + ] + ] + }, + { + "id": "9d6abe67.6bb3d", + "type": "ui_button", + "z": "cb95299c.2817c8", + "name": "", + "group": "64903b47.4034e4", + "order": 1, + "width": 0, + "height": 0, + "passthru": false, + "label": "Home", + "tooltip": "", + "color": "", + "bgcolor": "", + "icon": "home", + "payload": "{\"tab\":\"Home\"}", + "payloadType": "json", + "topic": "", + "x": 430, + "y": 600, + "wires": [ + [ + "f0fb77cf.8f1c28" + ] + ] + }, + { + "id": "f0fb77cf.8f1c28", + "type": "ui_ui_control", + "z": "cb95299c.2817c8", + "name": "", + "events": "change", + "x": 740, + "y": 600, + "wires": [ + [] + ] + }, + { + "id": "8ec68b82.17e3d8", + "type": "ui_button", + "z": "cb95299c.2817c8", + "name": "Start segmentation", + "group": "abeb6dad.635a2", + "order": 10, + "width": 5, + "height": 1, + "passthru": false, + "label": "Start segmentation", + "tooltip": "", + "color": "", + "bgcolor": "", + "icon": "", + "payload": "{\"action\":\"segment\"}", + "payloadType": "json", + "topic": "segmenter/segment", + "x": 370, + "y": 460, + "wires": [ + [ + "33c28dc1.238002", + "c72a1064.1ec388" + ] + ] + }, + { + "id": "27be7971.b3fbce", + "type": "ui_button", + "z": "cb95299c.2817c8", + "d": true, + "name": "Stop segmentation", + "group": "abeb6dad.635a2", + "order": 12, + "width": 4, + "height": 1, + "passthru": true, + "label": "Stop segmentation", + "tooltip": "", + "color": "", + "bgcolor": "#AD1625", + "icon": "", + "payload": "{\"action\":\"stop\"}", + "payloadType": "json", + "topic": "segmenter/segment", + "x": 370, + "y": 520, + "wires": [ + [ + "16f3cef4.0acac9" + ] + ] + }, + { + "id": "16f3cef4.0acac9", + "type": "mqtt out", + "z": "cb95299c.2817c8", + "name": "", + "topic": "", + "qos": "", + "retain": "", + "broker": "8dc3722c.06efa8", + "x": 850, + "y": 520, + "wires": [] + }, + { + "id": "8f3788f6.ddcf98", + "type": "function", + "z": "cb95299c.2817c8", + "name": "obj_counter", + "func": "obj_counter = flow.get('obj_counter')\nobj_counter = obj_counter + 1\nflow.set('obj_counter', obj_counter)\nmsg.payload = obj_counter\nmsg.topic = \"object count\"\nreturn msg", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "x": 810, + "y": 800, + "wires": [ + [ + "fa3b7929.ac7da8", + "9d53dbe2.dbffe8" + ] + ] + }, + { + "id": "aa38dbbc.cf0a9", + "type": "switch", + "z": "cb95299c.2817c8", + "name": "Segmenter", + "property": "topic", + "propertyType": "msg", + "rules": [ + { + "t": "eq", + "v": "status/segmenter", + "vt": "str" + }, + { + "t": "eq", + "v": "status/segmenter/name", + "vt": "str" + }, + { + "t": "eq", + "v": "status/segmenter/object_id", + "vt": "str" + }, + { + "t": "eq", + "v": "status/segmenter/metric", + "vt": "str" + } + ], + "checkall": "true", + "repair": false, + "outputs": 4, + "x": 490, + "y": 740, + "wires": [ + [ + "b9a23b91.93638", + "6919465f.332e5" + ], + [ + "49af3d24.1799e4" + ], + [ + "8f3788f6.ddcf98" + ], + [] + ] + }, + { + "id": "9d53dbe2.dbffe8", + "type": "ui_chart", + "z": "cb95299c.2817c8", + "name": "counter graph", + "group": "46be9c86.dea684", + "order": 7, + "width": 10, + "height": 2, + "label": "", + "chartType": "horizontalBar", + "legend": "false", + "xformat": "HH:mm:ss", + "interpolate": "linear", + "nodata": "Objects count will be shown here once the segmentation is started", + "dot": false, + "ymin": "", + "ymax": "", + "removeOlder": 1, + "removeOlderPoints": "", + "removeOlderUnit": "3600", + "cutout": 0, + "useOneColor": true, + "useUTC": false, + "colors": [ + "#1f77b4", + "#aec7e8", + "#ff7f0e", + "#2ca02c", + "#98df8a", + "#d62728", + "#ff9896", + "#9467bd", + "#c5b0d5" + ], + "outputs": 1, + "x": 1340, + "y": 840, + "wires": [ + [] + ] + }, + { + "id": "a4f0f0d1.3aca88", + "type": "ui_toast", + "z": "cb95299c.2817c8", + "position": "top right", + "displayTime": "5", + "highlight": "", + "sendall": true, + "outputs": 0, + "ok": "OK", + "cancel": "", + "raw": false, + "topic": "", + "name": "", + "x": 1350, + "y": 680, + "wires": [] + }, + { + "id": "49af3d24.1799e4", + "type": "debug", + "z": "cb95299c.2817c8", + "name": "segmentation name", + "active": true, + "tosidebar": true, + "console": false, + "tostatus": false, + "complete": "true", + "targetType": "full", + "statusVal": "", + "statusType": "auto", + "x": 840, + "y": 760, + "wires": [] + }, + { + "id": "7088a5be.0c79a4", + "type": "template", + "z": "cb95299c.2817c8", + "name": "Create sentence", + "field": "payload", + "fieldType": "msg", + "format": "handlebars", + "syntax": "mustache", + "template": "The {{topic}} is {{payload.status}}", + "output": "str", + "x": 1100, + "y": 680, + "wires": [ + [ + "a4f0f0d1.3aca88" + ] + ] + }, + { + "id": "b9a23b91.93638", + "type": "change", + "z": "cb95299c.2817c8", + "name": "Remove high-level topic", + "rules": [ + { + "t": "change", + "p": "topic", + "pt": "msg", + "from": "status/", + "fromt": "str", + "to": "", + "tot": "str" + } + ], + "action": "", + "property": "", + "from": "", + "to": "", + "reg": false, + "x": 850, + "y": 680, + "wires": [ + [ + "7088a5be.0c79a4" + ] + ] + }, + { + "id": "6919465f.332e5", + "type": "ui_text", + "z": "cb95299c.2817c8", + "group": "46be9c86.dea684", + "order": 1, + "width": 10, + "height": 1, + "name": "segmenter", + "label": "Segmenter status:", + "format": "{{msg.payload.status}}", + "layout": "row-spread", + "x": 810, + "y": 720, + "wires": [] + }, + { + "id": "fa3b7929.ac7da8", + "type": "ui_text", + "z": "cb95299c.2817c8", + "group": "46be9c86.dea684", + "order": 5, + "width": 4, + "height": 1, + "name": "counter", + "label": "", + "format": "{{msg.payload}}", + "layout": "col-center", + "x": 1320, + "y": 800, + "wires": [] + }, + { + "id": "640ece83.88cab", + "type": "inject", + "z": "cb95299c.2817c8", + "name": "Init graphs", + "props": [ + { + "p": "payload" + }, + { + "p": "topic", + "vt": "str" + } + ], + "repeat": "", + "crontab": "", + "once": true, + "onceDelay": 0.1, + "topic": "object count", + "payload": "0", + "payloadType": "num", + "x": 810, + "y": 880, + "wires": [ + [ + "4f3f7c4a.cb21c4" + ] + ] + }, + { + "id": "25867454.a8e334", + "type": "link in", + "z": "cb95299c.2817c8", + "name": "Segmenter module status", + "links": [ + "dcf5bd45.16a8d" + ], + "x": 295, + "y": 740, + "wires": [ + [ + "aa38dbbc.cf0a9" + ] + ] + }, + { + "id": "c8749cbb.55254", + "type": "function", + "z": "cb95299c.2817c8", + "name": "set global", + "func": "global.set(msg.topic, msg.payload);", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 960, + "y": 380, + "wires": [ + [] + ] + }, + { + "id": "d43c3ed9.e6cb1", + "type": "ui_template", + "z": "cb95299c.2817c8", + "group": "46be9c86.dea684", + "name": "Object counts", + "order": 3, + "width": 0, + "height": 0, + "format": "

Object counts

", + "storeOutMessages": true, + "fwdInMessages": true, + "resendOnRefresh": true, + "templateScope": "local", + "x": 1340, + "y": 760, + "wires": [ + [] + ] + }, + { + "id": "33c28dc1.238002", + "type": "function", + "z": "cb95299c.2817c8", + "name": "prepare segmentation", + "func": "global.set('obj_counter', 0);\n\nvar segmentation_list = flow.get('segmentation_list')\nif (segmentation_list !== undefined && segmentation_list !== \"\") {\n msg.payload['path'] = segmentation_list\n}\n\n\nvar force = flow.get('force')\nif (force !== undefined && force !== \"\") {\n msg.payload['settings'] = {\"force\":Boolean(force)}\n}\n\n\nvar recursive = flow.get('recursive')\nif (recursive !== undefined && recursive !== \"\") {\n if (\"settings\" in msg.payload){\n msg.payload.settings[\"recursive\"] = Boolean(recursive)\n }\n else{\n msg.payload['settings'] = {\"recursive\": Boolean(recursive)}\n }\n}\n\nvar ecotaxa = flow.get('ecotaxa')\nif (ecotaxa !== undefined && ecotaxa !== \"\") {\n if (\"settings\" in msg.payload){\n msg.payload.settings[\"ecotaxa\"] = Boolean(ecotaxa)\n }\n else{\n msg.payload['settings'] = {\"ecotaxa\": Boolean(ecotaxa)}\n }\n}\n\nvar keep = flow.get('keep')\nif (keep !== undefined && keep !== \"\") {\n if (\"settings\" in msg.payload){\n msg.payload.settings[\"keep\"] = Boolean(keep)\n }\n else{\n msg.payload['settings'] = {\"keep\": Boolean(keep)}\n }\n}\n\nvar process_id = global.get('process_id')\nif (process_id !== undefined && process_id !== \"\") {\n if (\"settings\" in msg.payload){\n msg.payload.settings[\"process_id\"] = process_id\n }\n else{\n msg.payload['settings'] = {\"process_id\": process_id}\n }\n}\n\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 620, + "y": 460, + "wires": [ + [ + "16f3cef4.0acac9" + ] + ] + }, + { + "id": "fa12f9f8.00cfa8", + "type": "subflow:1c24ad9c.bebec2", + "z": "cb95299c.2817c8", + "name": "", + "env": [], + "x": 430, + "y": 380, + "wires": [ + [ + "3b72d11c.86e9e6" + ] + ] + }, + { + "id": "3b72d11c.86e9e6", + "type": "function", + "z": "cb95299c.2817c8", + "name": "get process_id", + "func": "msg.payload = msg.payload.process_id;\nmsg.topic = \"process_id\";\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "x": 600, + "y": 380, + "wires": [ + [ + "56971109c8be3b54" + ] + ] + }, + { + "id": "3ea12061.ce62c", + "type": "ui_list", + "z": "cb95299c.2817c8", + "group": "abeb6dad.635a2", + "name": "", + "order": 9, + "width": 10, + "height": 11, + "lineType": "one", + "actionType": "check", + "allowHTML": false, + "outputs": 1, + "topic": "", + "x": 770, + "y": 140, + "wires": [ + [ + "cb3b87b5.63c4" + ] + ] + }, + { + "id": "8bd8fb2c.53fa4", + "type": "dir2files", + "z": "cb95299c.2817c8", + "name": "", + "dirname": "/home/pi/data/img/", + "pathRegex": "", + "isRecursive": true, + "findDir": true, + "isArray": true, + "x": 460, + "y": 140, + "wires": [ + [ + "ba2947.c854deb8" + ] + ] + }, + { + "id": "127d4ee.f8ad1b1", + "type": "ui_button", + "z": "cb95299c.2817c8", + "name": "Refresh", + "group": "abeb6dad.635a2", + "order": 8, + "width": 0, + "height": 0, + "passthru": false, + "label": "Update acquisition's folder list", + "tooltip": "Refresh the list of previous acquisitions", + "color": "", + "bgcolor": "", + "icon": "mi-find_replace", + "payload": "", + "payloadType": "date", + "topic": "update", + "x": 260, + "y": 140, + "wires": [ + [ + "8bd8fb2c.53fa4", + "56f845f5.e7c054" + ] + ] + }, + { + "id": "946ce9ee.092cf", + "type": "inject", + "z": "cb95299c.2817c8", + "name": "Init", + "props": [ + { + "p": "payload" + } + ], + "repeat": "", + "crontab": "", + "once": true, + "onceDelay": 0.1, + "topic": "", + "payload": "", + "payloadType": "date", + "x": 270, + "y": 100, + "wires": [ + [ + "8bd8fb2c.53fa4", + "56f845f5.e7c054" + ] + ] + }, + { + "id": "cb3b87b5.63c4", + "type": "function", + "z": "cb95299c.2817c8", + "name": "update segmentation_list", + "func": "var segmentation_list = flow.get('segmentation_list');\n\nif (segmentation_list === undefined || segmentation_list === \"\") {\n segmentation_list = []\n console.log(\"error\")\n}\n\npath = \"/home/pi/data/img/\" + msg.payload.title\n\nif (msg.payload.isChecked){\n if (segmentation_list.includes(path) === false){\n segmentation_list.push(path)\n }\n // Element already in list, don't push it more than once\n //segmentation_list.push(msg.payload[\"title\"])\n}\nelse {\n var pos = segmentation_list.indexOf(path)\n segmentation_list.splice(pos, 1)\n}\n\nflow.set('segmentation_list', segmentation_list)", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "x": 950, + "y": 140, + "wires": [ + [] + ] + }, + { + "id": "56f845f5.e7c054", + "type": "change", + "z": "cb95299c.2817c8", + "name": "Reset segmentation_list", + "rules": [ + { + "t": "set", + "p": "segmentation_list", + "pt": "flow", + "to": "[]", + "tot": "json" + } + ], + "action": "", + "property": "", + "from": "", + 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You can choose here in which folder(s) you want the segmentation script to run. A few details though:\n
The segmentation is run recursively in all folders. So if you select a top level folder, the segmentation will be run in all subfolders.\n
Also, you will be able to chose wether for force the segmentation for folders in which it has run already.
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\n Latest object segmented:
\n \"If\n
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\n\n
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\n The PlanktoScope software application consists of three components: a Node-RED dashboard which provides the user interface you're using; a Hardware Controller\n which executes commands sent from the Node-RED dashboard for hardware control and image acquisition; and a Segmenter which processes an acquired dataset of\n images and isolates objects from those images. Each component has its own independent log of messages, managed separately from the logs for the other components.\n

\n

\n All three components have live-updating logs which you can monitor. Additionally, the Hardware Controller and the Segmenter also save all of their log messages\n to files which you can browse and download. Those software components create a new log file each time they start, and the name of the log file includes the time\n in the PlanktoScope's clock when the software component started. However, if your PlanktoScope's clock is usually wrong, it makes the log files difficult to navigate.\n This will be fixed in a future version of the software.\n

\n

\n If you need to share your logs with other people (e.g. on Slack or GitHub), you should open the \"Downloadable Logs\" links, and then you can select one file or multiple\n log files for downloading as a zip archive.\n

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"id": "4828d2f4.7c712c", + "type": "function", + "z": "1371dec5.76e671", + "name": "set global", + "func": "global.set(\"acq_instrument_id\",msg.payload);\n", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 580, + "y": 720, + "wires": [ + [] + ] + }, + { + "id": "e2f39a35.f57298", + "type": "subflow:1c24ad9c.bebec2", + "z": "1371dec5.76e671", + "name": "", + "env": [], + "x": 130, + "y": 640, + "wires": [ + [ + "9b64f397101c2762" + ] + ] + }, + { + "id": "3e64877a.9684b", + "type": "function", + "z": "1371dec5.76e671", + "name": "set global", + "func": "global.set(\"acq_software\", \"PlanktoScope \" + msg.payload);\n", + "outputs": 1, + "timeout": "", + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 820, + "y": 520, + "wires": [ + [] + ] + }, + { + "id": "bdc6718a.dd5d48", + "type": "ui_text", + "z": "1371dec5.76e671", + "group": "ce9e278.781eed8", + "order": 2, + "width": 0, + "height": 0, + "name": "", + "label": "Instrument Type", + "format": "{{msg.payload}}", + "layout": "row-spread", + "className": "", + "style": false, + "font": "", + "fontSize": "", + "color": "#000000", + "x": 600, + "y": 640, + "wires": [] + }, + { + "id": "a400a97e.e333a8", + "type": "ui_text", + "z": "1371dec5.76e671", + "group": "ce9e278.781eed8", + "order": 1, + "width": 0, + "height": 0, + "name": "", + "label": "Instrument Name", + "format": "{{msg.payload}}", + "layout": "row-spread", + "x": 610, + "y": 680, + "wires": [] + }, + { + "id": "8343fa69.49339", + "type": "ui_text", + "z": "1371dec5.76e671", + "group": "ce9e278.781eed8", + "order": 3, + "width": 0, + "height": 0, + "name": "", + "label": "Software Version", + "format": "{{msg.payload}}", + "layout": "row-spread", + "className": "", + "style": false, + "font": "", + "fontSize": "", + "color": "#000000", + "x": 850, + "y": 560, + "wires": [] + }, + { + "id": "f783aefd.c3bfd8", + "type": "ui_text", + "z": "1371dec5.76e671", + "group": "ce9e278.781eed8", + "order": 4, + "width": 0, + "height": 0, + "name": "", + "label": "Camera Name", + "format": "{{msg.payload}}", + "layout": "row-spread", + "x": 600, + "y": 760, + "wires": [] + }, + { + "id": "30067f35.532f2", + "type": "link in", + "z": "1371dec5.76e671", + "name": "Camera Name", + "links": [ + "559a8085.1d6b9" + ], + "x": 155, + "y": 760, + "wires": [ + [ + "f783aefd.c3bfd8" + ] + ] + }, + { + "id": "eaf74a43.fa27d", + "type": "switch", + "z": "1371dec5.76e671", + "name": "if disk > 90%", + "property": "payload", + "propertyType": "msg", + "rules": [ + { + "t": "gte", + "v": "90", + "vt": "num" + } + ], + "checkall": "true", + "repair": false, + "outputs": 1, + "x": 590, + "y": 120, + "wires": [ + [ + "6d09f428.930bcc" + ] + ] + }, + { + "id": "46d5e78b.15f998", + "type": "ui_toast", + "z": "1371dec5.76e671", + "position": "dialog", + "displayTime": "10", + "highlight": "", + "sendall": true, + "outputs": 1, + "ok": "OK", + "cancel": "", + "raw": false, + "topic": "", + "name": "", + "x": 1090, + "y": 120, + "wires": [ + [] + ] + }, + { + "id": "24df077a.cb252", + "type": "change", + "z": "1371dec5.76e671", + "name": "full disk msg", + "rules": [ + { + "t": "set", + "p": "payload", + "pt": "msg", + "to": "\"Your drive has reached 90% capacity, you should do a backup to an external drive and a purge.\"", + "tot": "str" + } + ], + "action": "", + "property": "", + "from": "", + "to": "", + "reg": false, + "x": 930, + "y": 120, + "wires": [ + [ + "46d5e78b.15f998" + ] + ] + }, + { + "id": "6d09f428.930bcc", + "type": "delay", + "z": "1371dec5.76e671", + "name": "", + "pauseType": "rate", + "timeout": "5", + "timeoutUnits": "seconds", + "rate": "1", + "nbRateUnits": "5", + "rateUnits": "minute", + "randomFirst": "1", + "randomLast": "5", + "randomUnits": "seconds", + "drop": true, + "allowrate": false, + "outputs": 1, + "x": 760, + "y": 120, + "wires": [ + [ + "24df077a.cb252" + ] + ] + }, + { + "id": "5883e629f5d546ed", + "type": "file in", + "z": "1371dec5.76e671", + "name": "Get machine name", + "filename": "/run/machine-name", + "filenameType": "str", + "format": "utf8", + "chunk": false, + "sendError": false, + "encoding": "none", + "allProps": false, + "x": 350, + "y": 700, + "wires": [ + [ + "a400a97e.e333a8", + "4828d2f4.7c712c" + ] + ] + }, + { + "id": "9b64f397101c2762", + "type": "change", + "z": "1371dec5.76e671", + "name": "Get acq_instrument", + "rules": [ + { + "t": "set", + "p": "payload", + "pt": "msg", + "to": "payload.acq_instrument", + "tot": "msg" + }, + { + "t": "set", + "p": "topic", + "pt": "msg", + "to": "acq_instrument", + "tot": "str" + } + ], + "action": "", + "property": "", + "from": "", + "to": "", + "reg": false, + "x": 350, + "y": 640, + "wires": [ + [ + "bdc6718a.dd5d48" + ] + ] + }, + { + "id": "99725e1437cc390b", + "type": "file in", + "z": "1371dec5.76e671", + "name": "Versioning File", + "filename": "/usr/share/planktoscope/installer-versioning.yml", + "filenameType": "str", + "format": "utf8", + "chunk": false, + "sendError": false, + "encoding": "none", + "allProps": false, + "x": 240, + "y": 540, + "wires": [ + [ + "f4e21e28bd903f6d" + ] + ], + "info": "# PlanktoScope Help\nThis Node will read the content of the file named **config.txt** containing all the input placeholders.\n" + }, + { + "id": "6a0fa173874c3ddd", + "type": "inject", + "z": "1371dec5.76e671", + "name": "once", + "props": [ + { + "p": "payload" + } + ], + "repeat": "", + "crontab": "", + "once": true, + "onceDelay": "", + "topic": "", + "payload": "start", + "payloadType": "str", + "x": 90, + "y": 540, + "wires": [ + [ + "99725e1437cc390b" + ] + ] + }, + { + "id": "f4e21e28bd903f6d", + "type": "yaml", + "z": "1371dec5.76e671", + "property": "payload", + "name": "", + "x": 390, + "y": 540, + "wires": [ + [ + "d6264e3e29b68c6e", + "aa84b912c996c69e", + "fba22dc2c16b3ec8" + ] + ] + }, + { + "id": "d6264e3e29b68c6e", + "type": "change", + "z": "1371dec5.76e671", + "name": "Get version", + "rules": [ + { + "t": "set", + "p": "payload", + "pt": "msg", + "to": "payload.version", + "tot": "msg" + } + ], + "action": "", + "property": "", + "from": "", + "to": "", + "reg": false, + "x": 590, + "y": 540, + "wires": [ + [ + "3e64877a.9684b", + "8343fa69.49339" + ] + ] + }, + { + "id": "aa84b912c996c69e", + "type": "change", + "z": "1371dec5.76e671", + "name": "Get repo", + "rules": [ + { + "t": "set", + "p": "payload", + "pt": "msg", + "to": "payload.repo", + "tot": "msg" + } + ], + "action": "", + "property": "", + "from": "", + "to": "", + "reg": false, + "x": 580, + "y": 500, + "wires": [ + [ + "fd55e7a43d9bdbbb" + ] + ] + }, + { + "id": "fd55e7a43d9bdbbb", + "type": "function", + "z": "1371dec5.76e671", + "name": "set global", + "func": "global.set(\"process_source\", msg.payload);\n", + "outputs": 1, + "timeout": "", + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 820, + "y": 480, + "wires": [ + [] + ] + }, + { + "id": "fba22dc2c16b3ec8", + "type": "change", + "z": "1371dec5.76e671", + "name": "Get commit", + "rules": [ + { + "t": "set", + "p": "payload", + "pt": "msg", + "to": "payload.commit", + "tot": "msg" + } + ], + "action": "", + "property": "", + "from": "", + "to": "", + "reg": false, + "x": 590, + "y": 580, + "wires": [ + [ + "2ddc75a4ac38a17f" + ] + ] + }, + { + "id": "2ddc75a4ac38a17f", + "type": "function", + "z": "1371dec5.76e671", + "name": "set global", + "func": "global.set(\"process_commit\", msg.payload);\n", + "outputs": 1, + "timeout": "", + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 820, + "y": 600, + "wires": [ + [] + ] + }, + { + "id": "797675a937dc1629", + "type": "ui_template", + "z": "1371dec5.76e671", + "group": "3da7da8f.179606", + "name": "Metrics panel", + "order": 2, + "width": "0", + "height": "0", + "format": "
\n

\n The instrument's system time is different from your web browser's time by {{drift}}.\n As a result, timestamps in your datasets will be incorrect.\n Additionally, system metrics will not be recorded or shown correctly.\n Additionally, you will see incorrectly-aligned graphs in the metrics below.\n

\n

Please change the instrument's system time or your web browser's time to accurate values.

\n

\n \n

\n
\n\n
\n

Loading system metrics, please wait...

\n
\n\n
\n \n
\n\n\n", + "storeOutMessages": true, + "fwdInMessages": true, + "resendOnRefresh": false, + "templateScope": "local", + "className": "", + "x": 330, + "y": 280, + "wires": [ + [] + ] + }, + { + "id": "aa2e4cd182dbc776", + "type": "function", + "z": "1371dec5.76e671", + "name": "Get system time", + "func": "var date = new Date();\ndate.setSeconds(0, 0);\nmsg.payload = (\n date.toISOString().replace('T', ' ').replace(/:\\d+\\.\\d+Z/,' UTC')\n);\nreturn msg", + "outputs": 1, + "timeout": "", + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 340, + "y": 240, + "wires": [ + [ + "7c9ee522f6dbd3b0" + ] + ] + }, + { + "id": "7c9ee522f6dbd3b0", + "type": "ui_text", + "z": "1371dec5.76e671", + "group": "ce9e278.781eed8", + "order": 5, + "width": 0, + "height": 0, + "name": "", + "label": "System Time", + "format": "{{msg.payload}}", + "layout": "row-spread", + "className": "", + "style": false, + "font": "", + "fontSize": "", + "color": "#000000", + "x": 590, + "y": 240, + "wires": [] + }, + { + "id": "6dc9862f2eebe935", + "type": "http in", + "z": "1371dec5.76e671", + "name": "POST /api/system-time", + "url": "/api/system-time", + "method": "post", + "upload": false, + "swaggerDoc": "", + "x": 120, + "y": 360, + "wires": [ + [ + "a7994a561866dc94", + "dea222e9a6553cac" + ] + ] + }, + { + "id": "1c4113d4c933fd4b", + "type": "ui_toast", + "z": "1371dec5.76e671", + "position": "top right", + "displayTime": "3", + "highlight": "", + "sendall": true, + "outputs": 0, + "ok": "OK", + "cancel": "", + "raw": false, + "className": "", + "topic": "Setting system time", + "name": "", + "x": 610, + "y": 340, + "wires": [] + }, + { + "id": "a7994a561866dc94", + "type": "function", + "z": "1371dec5.76e671", + "name": "Get system time", + "func": "var date = new Date(msg.payload.timestamp);\nmsg.payload = (\n date.toISOString().replace('T', ' ').replace(/:\\d+\\.\\d+Z/,' UTC')\n);\nreturn msg", + "outputs": 1, + "timeout": "", + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 340, + "y": 340, + "wires": [ + [ + "1c4113d4c933fd4b", + "423659c62bae0524" + ] + ] + }, + { + "id": "814ce40bfc413777", + "type": "exec", + "z": "1371dec5.76e671", + "command": "sudo date -s", + "addpay": "payload", + "append": "", + "useSpawn": "", + "timer": "", + "winHide": false, + "name": "Set system time", + "x": 600, + "y": 380, + "wires": [ + [], + [], + [] + ] + }, + { + "id": "dea222e9a6553cac", + "type": "function", + "z": "1371dec5.76e671", + "name": "Prepare timestamp", + "func": "msg.payload = ('@' + msg.payload.timestamp).slice(0, -3);\nreturn msg;", + "outputs": 1, + "timeout": "", + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 350, + "y": 380, + "wires": [ + [ + "814ce40bfc413777" + ] + ] + }, + { + "id": "f6f570b10c675854", + "type": "ui_template", + "z": "1371dec5.76e671", + "group": "ce9e278.781eed8", + "name": "Browser time", + "order": 6, + "width": "6", + "height": "1", + "format": "
\n

Browser Time

\n

{{time}}

\n
\n\n", + "storeOutMessages": true, + "fwdInMessages": true, + "resendOnRefresh": false, + "templateScope": "local", + "className": "", + "x": 330, + "y": 200, + "wires": [ + [] + ] + }, + { + "id": "3822b843fda94733", + "type": "http in", + "z": "1371dec5.76e671", + "name": "GET /api/system-time", + "url": "/api/system-time", + "method": "get", + "upload": false, + "swaggerDoc": "", + "x": 120, + "y": 420, + "wires": [ + [ + "5b0a65d3fe187424" + ] + ] + }, + { + "id": "5b0a65d3fe187424", + "type": "function", + "z": "1371dec5.76e671", + "name": "Get system time", + "func": "var date = new Date();\nmsg.payload = {'timestamp': date.getTime()};\nreturn msg", + "outputs": 1, + "timeout": "", + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 340, + "y": 420, + "wires": [ + [ + "312a15407574b38e" + ] + ] + }, + { + "id": "423659c62bae0524", + "type": "http response", + "z": "1371dec5.76e671", + "name": "Send POST response", + "statusCode": "", + "headers": {}, + "x": 620, + "y": 300, + "wires": [] + }, + { + "id": "312a15407574b38e", + "type": "http response", + "z": "1371dec5.76e671", + "name": "Send GET response", + "statusCode": "", + "headers": { + "Content-Type": "application/json; charset=UTF-8" + }, + "x": 620, + "y": 420, + "wires": [] + }, + { + "id": "1fdf77b5.24e4e", + "type": "mqtt in", + "z": "9a22e67a.378818", + "name": "", + "topic": "status/#", + "qos": "0", + "datatype": "json", + "broker": "8dc3722c.06efa8", + "nl": false, + "rap": false, + "inputs": 0, + "x": 290, + "y": 340, + "wires": [ + [ + "fa73983d.318188" + ] + ] + }, + { + "id": "4a1e9e3e.27506", + "type": "switch", + "z": "9a22e67a.378818", + "name": "Filter segmenter out", + "property": "topic", + "propertyType": "msg", + "rules": [ + { + "t": "else" + }, + { + "t": "cont", + "v": "status/segmenter", + "vt": "str" + } + ], + "checkall": "true", + "repair": false, + "outputs": 2, + "x": 620, + "y": 340, + "wires": [ + [ + "58f2e0f.4e8b12" + ], + [ + "dcf5bd45.16a8d" + ] + ] + }, + { + "id": "fa73983d.318188", + "type": "json", + "z": "9a22e67a.378818", + "name": "", + "property": "payload", + "action": "obj", + "pretty": true, + "x": 430, + "y": 340, + "wires": [ + [ + "4a1e9e3e.27506" + ] + ] + }, + { + "id": "58f2e0f.4e8b12", + "type": "link out", + "z": "9a22e67a.378818", + "name": "Fluidic module status", + "links": [ + "bb628f8d.98f108" + ], + "x": 795, + "y": 320, + "wires": [] + }, + { + "id": "dcf5bd45.16a8d", + "type": "link out", + "z": "9a22e67a.378818", + "name": "Segmenter module status", + "links": [ + "25867454.a8e334" + ], + "x": 795, + "y": 360, + "wires": [] + }, + { + "id": "e41870d7.300eb8", + "type": "link out", + "z": "1eaf21c8.f7a21e", + "name": "Stepper config change", + "mode": "link", + "links": [ + "438febd245a9f73c" + ], + "x": 1495, + "y": 380, + "wires": [] + }, + { + "id": "2068e7f.f4efb18", + "type": "delay", + "z": "1eaf21c8.f7a21e", + "name": "", + "pauseType": "delay", + "timeout": "1", + "timeoutUnits": "seconds", + "rate": "1", + "nbRateUnits": "1", + "rateUnits": "second", + "randomFirst": "1", + "randomLast": "5", + "randomUnits": "seconds", + "drop": false, + "outputs": 1, + "x": 1180, + "y": 380, + "wires": [ + [ + "e41870d7.300eb8" + ] + ] + }, + { + "id": "8e3b3d3c.955148", + "type": "subflow:4ed26b8b.253504", + "z": "1eaf21c8.f7a21e", + "name": "", + "env": [], + "x": 1220, + "y": 420, + "wires": [] + }, + { + "id": "54ba7f16.709ad8", + "type": "change", + "z": "1eaf21c8.f7a21e", + "name": "Get pump_steps_per_ml", + "rules": [ + { + "t": "set", + "p": "payload", + "pt": "msg", + "to": "payload.pump_steps_per_ml", + "tot": "msg" + } + ], + "action": "", + "property": "", + "from": "", + "to": "", + "reg": false, + "x": 670, + "y": 400, + "wires": [ + [ + "ee58b91c.396108" + ] + ] + }, + { + "id": "ee58b91c.396108", + "type": "ui_text_input", + "z": "1eaf21c8.f7a21e", + "name": "pump_steps_per_ml", + "label": "Pump: steps per mL", + "tooltip": "", + "group": "6be36295.0ab324", + "order": 6, + "width": 0, + "height": 0, + "passthru": false, + "mode": "number", + "delay": "2000", + "topic": "pump_steps_per_ml", + "sendOnBlur": true, + "className": "", + "topicType": "str", + "x": 940, + "y": 400, + "wires": [ + [ + "2068e7f.f4efb18", + "8e3b3d3c.955148" + ] + ] + }, + { + "id": "7534dfd9.8cf3e8", + "type": "ui_template", + "z": "1eaf21c8.f7a21e", + "group": "6be36295.0ab324", + "name": "Information", + "order": 1, + "width": "8", + "height": "3", + "format": "
\n

\n Changing one of these values will cause the Python hardware controller to restart, to reload the new hardware configuration.\n

\n

\n Warning: selecting a hardware version from the dropdown menu below will also overwrite all of your hardware settings, including your camera white balance settings.\n

\n

\n If you are not sure, you probably should not be touching anything here!\n

\n
\n", + "storeOutMessages": true, + "fwdInMessages": true, + "resendOnRefresh": true, + "templateScope": "local", + "className": "", + "x": 610, + "y": 40, + "wires": [ + [] + ] + }, + { + "id": "a7e5c7f4.644678", + "type": "ui_dropdown", + "z": "1eaf21c8.f7a21e", + "name": "", + "label": "Hardware version", + "tooltip": "", + "place": "Select option", + "group": "6be36295.0ab324", + "order": 2, + "width": 0, + "height": 0, + "passthru": false, + "multiple": false, + "options": [ + { + "label": "", + "value": "PlanktoScope v2.1", + "type": "str" + }, + { + "label": "", + "value": "PlanktoScope v2.3", + "type": "str" + }, + { + "label": "", + "value": "PlanktoScope v2.5", + "type": "str" + }, + { + "label": "", + "value": "PlanktoScope v2.6", + "type": "str" + }, + { + "label": "", + "value": "PlanktoScope v3.0", + "type": "str" + } + ], + "payload": "", + "topic": "acq_instrument", + "topicType": "str", + "className": "", + "x": 670, + "y": 160, + "wires": [ + [ + "08d177136bd18281", + "56dd3f82c45717f0" + ] + ] + }, + { + "id": "1cfadc66.3cde8c", + "type": "subflow:1c24ad9c.bebec2", + "z": "1eaf21c8.f7a21e", + "name": "", + "env": [], + "x": 510, + "y": 300, + "wires": [ + [] + ] + }, + { + "id": "3e2c5c1c.4c57b4", + "type": "function", + "z": "1eaf21c8.f7a21e", + "name": "Save global", + "func": "global.set(msg.topic,msg.payload);\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 350, + "y": 300, + "wires": [ + [ + "1cfadc66.3cde8c" + ] + ] + }, + { + "id": "427c312.fc5e65", + "type": "subflow:1c24ad9c.bebec2", + "z": "1eaf21c8.f7a21e", + "name": "", + "env": [], + "x": 170, + "y": 140, + "wires": [ + [ + "c00c6732b9f36adb" + ] + ] + }, + { + "id": "c67c305004f87e39", + "type": "change", + "z": "1eaf21c8.f7a21e", + "name": "Get process_pixel_fixed", + "rules": [ + { + "t": "set", + "p": "payload", + "pt": "msg", + "to": "payload.process_pixel_fixed", + "tot": "msg" + } + ], + "action": "", + "property": "", + "from": "", + "to": "", + "reg": false, + "x": 670, + "y": 480, + "wires": [ + [ + "244ca5dd62df2bcd" + ] + ] + }, + { + "id": "244ca5dd62df2bcd", + "type": "ui_text_input", + "z": "1eaf21c8.f7a21e", + "name": "process_pixel_fixed", + "label": "Pixel size calibration: um per pixel", + "tooltip": "Object size in µm / pixel. 0 will remove this calibration.", + "group": "6be36295.0ab324", + "order": 8, + "width": 0, + "height": 0, + "passthru": true, + "mode": "number", + "delay": "1000", + "topic": "process_pixel_fixed", + "sendOnBlur": true, + "className": "", + "topicType": "str", + "x": 940, + "y": 480, + "wires": [ + [ + "8e3b3d3c.955148", + "f9b47f4b1da15778" + ] + ] + }, + { + "id": "f9b47f4b1da15778", + "type": "function", + "z": "1eaf21c8.f7a21e", + "name": "Set or remove if null", + "func": "if (msg.payload == 0){\n global.set(msg.topic,undefined)\n}\nelse {\n global.set(msg.topic,msg.payload);\n}\n\nreturn msg", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": 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"addpay": "payload", + "append": "/home/pi/PlanktoScope/hardware.json", + "useSpawn": "false", + "timer": "", + "winHide": false, + "oldrc": false, + "name": "Copy default hardware config", + "x": 700, + "y": 220, + "wires": [ + [ + "97e582080deae888" + ], + [], + [] + ] + }, + { + "id": "97e582080deae888", + "type": "delay", + "z": "1eaf21c8.f7a21e", + "name": "", + "pauseType": "delay", + "timeout": "500", + "timeoutUnits": "milliseconds", + "rate": "1", + "nbRateUnits": "1", + "rateUnits": "second", + "randomFirst": "1", + "randomLast": "5", + "randomUnits": "seconds", + "drop": false, + "allowrate": false, + "outputs": 1, + "x": 930, + "y": 220, + "wires": [ + [ + "3973b999ee7b3b1d" + ] + ] + }, + { + "id": "3973b999ee7b3b1d", + "type": "link out", + "z": "1eaf21c8.f7a21e", + "name": "Reload hardware config", + "mode": "link", + "links": [ + "438febd245a9f73c", + "4ebc0345e63a78e9", + "5984b086eddc9311", + "a2f2a4c7cbae4446" + ], + "x": 1095, + "y": 220, + "wires": [] + }, + { + "id": "3bcaf757cbc77fbe", + "type": "subflow:b7861ce703215a01", + "z": "1eaf21c8.f7a21e", + "name": "", + "x": 380, + "y": 440, + "wires": [ + [ + "54ba7f16.709ad8", + "c67c305004f87e39", + "11955bbeefc29ab4" + ] + ] + }, + { + "id": "862235d10aae5b83", + "type": "inject", + "z": "1eaf21c8.f7a21e", + "name": "Once", + "props": [], + "repeat": "", + "crontab": "", + "once": true, + "onceDelay": 0.1, + "topic": "", + "x": 170, + "y": 460, + "wires": [ + [ + "3bcaf757cbc77fbe" + ] + ] + }, + { + "id": "c00c6732b9f36adb", + "type": "change", + "z": "1eaf21c8.f7a21e", + "name": "Get acq_instrument", + "rules": [ + { + "t": "set", + "p": "payload", + "pt": "msg", + "to": "payload.acq_instrument", + "tot": "msg" + }, + { + "t": "set", + "p": "topic", + "pt": "msg", + "to": "acq_instrument", + "tot": "str" + } + ], + "action": "", + "property": "", + "from": "", + "to": "", + "reg": false, + "x": 370, + "y": 140, + "wires": [ + [ + "a7e5c7f4.644678", + "56dd3f82c45717f0" + ] + ] + }, + { + "id": "4ebc0345e63a78e9", + "type": "link in", + "z": "1eaf21c8.f7a21e", + "name": "Load hardware config", + "links": [ + "3973b999ee7b3b1d" + ], + "x": 205, + "y": 420, + "wires": [ + [ + "3bcaf757cbc77fbe" + ] + ] + }, + { + "id": "cb9009e8a49e93cc", + "type": "link in", + "z": "1eaf21c8.f7a21e", + "name": "Set hardware version", + "links": [ + "08d177136bd18281", + "9f34e4a2f33c4022" + ], + "x": 205, + "y": 260, + "wires": [ + [ + "68703ef63da2f081", + "d276ce894f483bcf", + "3e2c5c1c.4c57b4", + "a7e5c7f4.644678" + ] + ] + }, + { + "id": "08d177136bd18281", + "type": "link out", + "z": "1eaf21c8.f7a21e", + "name": "Set hardware version", + "mode": "link", + "links": [ + "cb9009e8a49e93cc" + ], + "x": 875, + "y": 160, + "wires": [] + }, + { + "id": "56dd3f82c45717f0", + "type": "link out", + "z": "1eaf21c8.f7a21e", + "name": "Hardware version loaded", + "mode": "link", + "links": [ + "a2f2a4c7cbae4446" + ], + "x": 875, + "y": 120, + "wires": [] + } ] From 891c2c74b9d471978ce551d23dd12afb152664ee Mon Sep 17 00:00:00 2001 From: Sonny Piers Date: Wed, 21 May 2025 11:10:56 +0200 Subject: [PATCH 3/3] f --- .editorconfig | 5 +++++ .prettierignore | 2 ++ 2 files changed, 7 insertions(+) create mode 100644 .prettierignore diff --git a/.editorconfig b/.editorconfig index 757efe4c3..90812fb5c 100644 --- a/.editorconfig +++ b/.editorconfig @@ -11,3 +11,8 @@ insert_final_newline = true # Tab indentation (no size specified) [Makefile] indent_style = tab + +# Formatting managed by Node-RED +[flows.json] +indent_style = unset +indent_size = unset diff --git a/.prettierignore b/.prettierignore new file mode 100644 index 000000000..8b1eb44ac --- /dev/null +++ b/.prettierignore @@ -0,0 +1,2 @@ +# Formatting managed by Node-RED +flows.json