exorad_submit_long2

#!/bin/bash -l
#SBATCH --job-name=exorad           # shows up in the output of 'squeue'
#SBATCH --time=5-00:00:00          # specify the requested wall-time
#SBATCH --partition=astro2_long     # specify the partition to run on
#SBATCH --nodes=1                  # number of nodes allocated for this job
#SBATCH --ntasks-per-node=48                # number of MPI ranks per node
#SBATCH --exclusive
#SBATCH --mem=40G
#SBATCH --cpus-per-task=1           # number of OpenMP threads per MPI rank
#SBATCH --mail-type=ALL
#SBATCH -o exorad-%j.out
#SBATCH -e exorad-%j.err


# activate anaconda environment
conda activate exorad

# current work directory for this simulation
cd $SLURM_SUBMIT_DIR
echo "$SLURM_SUBMIT_DIR"
# load the required modules
module purge
module load astro inteloneapi/compiler inteloneapi/mpi

continue=""
while getopts 'uc' OPTION; do
  case "$OPTION" in
    u)
      update_last_iter
      ;;
    c)
      continue='1'
      ;;
    ?)
      echo "script usage: $(basename \$0) [-u][-c]" >&2
      exit 1
      ;;
  esac
done
shift "$(($OPTIND -1))"

if [ -n "$continue" ]
then
        telegram-send "$SLURM_SUBMIT_DIR: submitting followup"
        sbatch --dependency=afterok:$SLURM_JOB_ID exorad_submit_long2 -u -c
fi

telegram-send "$SLURM_SUBMIT_DIR ready to run"
telegram_simulation_bot &

cd ./run
ln -s ../input/* .
cp ../build/mitgcmuv .
# run it
echo "Ready to run"
echo "$(date)"
mpirun -n 48 ./mitgcmuv
telegram-send "$SLURM_SUBMIT_DIR ended"