[Meta] Autosolver cleanup

[luxaritas]

Tracking future improvements we deemed non-critical for merging the initial implementation

• Rename folding engine build location #902
• Investigate having ribotree+rnet build with cmake somehow

From reviews on #904

• Clean up Ribotree patchfile
• See if we can get the ribotree wheel to output to the correct location instead of needing to manually copy it

From reviews on #905

• Integrate Vienna 2.4 compile step into cmake(/patch.sh)
• Rename fold to solve or optimize
• See if we can remove the pyodide version # from the wheel URL so it doesnt break on update

From reviews on #906

• Investigate aligning SolverManager registration more closely with FolderManager/LayoutManager
• connect --> connectNotify simplification?
• Remove sync/async distinction
• Investigate promise cleanup
• Investigate CDN + vendored dts --> npm for pyodide
• Investigate improved handling of biopython
• Throw instead of warn
• Investigate getting codon sequence from puzzle definition
• Surface beam length, jitter, and temperature