plot_orf_method_comparison.slurm

#!/bin/bash
#SBATCH --job-name=plot_orf
#SBATCH --output=logs/plot_orf_%j.out
#SBATCH --error=logs/plot_orf_%j.err
#SBATCH --time=00:30:00
#SBATCH --mem=8G
#SBATCH --cpus-per-task=1
#SBATCH --partition=ada
#SBATCH --account=oceanography
#SBATCH --mail-type=FAIL
#==============================================================================
# ggplot panel from compare_orf_prediction_singlebest_dual outputs.
#
#   mkdir -p logs
#   sbatch plot_orf_method_comparison.slurm
#
# Uses BASE_DIR and SAMPLE_ID from 00_config.sh.
#==============================================================================

set -eo pipefail
cd "${SLURM_SUBMIT_DIR:-.}"
mkdir -p logs

source ./00_config.sh

if [ -n "${R_MODULE:-}" ]; then
  module load "${R_MODULE}"
fi

BASE_PLOT="${BASE_DIR}/orf_method_comparison/${SAMPLE_ID}_td_singlebest"
RSCRIPT="${SLURM_SUBMIT_DIR}/plot_orf_method_comparison.R"

if [ ! -f "${RSCRIPT}" ]; then
  echo "ERROR: ${RSCRIPT} not found"
  exit 1
fi
if [ ! -d "${BASE_PLOT}/complete" ] || [ ! -d "${BASE_PLOT}/with_partials" ]; then
  echo "ERROR: Expected dual-compare outputs under ${BASE_PLOT}"
  echo "Run: sbatch compare_orf_prediction_singlebest_dual.slurm"
  exit 1
fi

echo "Plotting: ${BASE_PLOT}"
Rscript "${RSCRIPT}" "${BASE_PLOT}"
echo "Done."