NAMESPACE

# Generated by roxygen2 (4.1.1): do not edit by hand

export(GenotypeBreaks)
export(bam2GRanges)
export(breakSeekr)
export(createCompositeFile)
export(deltaWCalculator)
export(plotBreakpoints)
export(runBreakpointr)
export(runBreakpointrALL)
export(writeBedFile)
import(GenomicRanges)
import(ggplot2)
import(grid)
importFrom(BiocGenerics,as.vector)
importFrom(GenomicAlignments,first)
importFrom(GenomicAlignments,readGAlignmentPairsFromBam)
importFrom(GenomicAlignments,readGAlignmentsFromBam)
importFrom(Rsamtools,ScanBamParam)
importFrom(Rsamtools,indexBam)
importFrom(Rsamtools,scanBamFlag)
importFrom(Rsamtools,scanBamHeader)
importFrom(cowplot,plot_grid)
importFrom(gtools,mixedsort)