Error in data.frame(chr1 = rep(chrom, curlength), start1 = start1[1:curlength], : arguments imply differing number of rows: 0, 1 Calls: makecombos -> data.frame

[sillysean]

Hi，

I hope you are doing well. I have run the mango pipeline using the short read data successfully, but an error occurred when switching to tagmentation-generated data.

I did follow the suggestion that I changed the default settings
--keepempty TRUE
--shortreads FALSE
--maxlength 1000

######## Below is the error report in the log file ########

[1] "counting reads per peak"
[1] "determining self-ligation distance"
[1] "self-ligation cutoff = 4498.4"
[1] "grouping PETs into interactions"
[1] "---Splitting PETs by chromosome"
[1] "---Intersecting PETs with peaks"
[1] "---Building putative interaction set"
[1] "modeling PETs based on peak depth and distance"
Error in data.frame(chr1 = rep(chrom, curlength), start1 = start1[1:curlength],  : 
  arguments imply differing number of rows: 0, 1
Calls: makecombos -> data.frame
Execution halted

However, this error persisted when different tagmentation-generated data were used. Is there an solution?
Thank you.

[burgeng]

Hello,

I am also experiencing this same problem at the same step. If anybody has any insight for how to resolve this issue, please reach out on this issue thread.

Thank you,
Noah

[ddduooo99]

Hi,

I am also experiencing this same problem at the same step. Have you solved this?

Thank you.