Hello,
I'm hoping to use DeepSequence to predict the effects of mutations, but can't find an example for how to train a model for alignments other than those tested in the original paper. For instance, it appears that run_svi.py will train model using the "BLAT_ECOLX" dataset. What is the best way to modify this code to train a model using a new .a2m file?
Thank you!
Hello,
I'm hoping to use DeepSequence to predict the effects of mutations, but can't find an example for how to train a model for alignments other than those tested in the original paper. For instance, it appears that
run_svi.pywill train model using the "BLAT_ECOLX" dataset. What is the best way to modify this code to train a model using a new .a2m file?Thank you!