symident/pyproject.toml at master · dModverse/symident · GitHub

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[build-system]
requires = ["scikit-build-core>=0.11", "pybind11>=2.12"]
build-backend = "scikit_build_core.build"

[project]
name = "symident"
version = "0.11.0"
description = "Structural identifiability of ODE models by Lie symmetries over finite fields"
readme = "README.md"
requires-python = ">=3.10"
license = "MIT"
license-files = ["LICENSE"]
authors = [{ name = "Simon Beyer", email = "simon.beyer@fdm.uni-freiburg.de" }]
keywords = ["structural identifiability", "Lie symmetries", "ODE models", "systems biology",
            "finite fields", "reparametrization"]
classifiers = [
    "Development Status :: 3 - Alpha",
    "Intended Audience :: Science/Research",
    "Operating System :: POSIX :: Linux",
    "Operating System :: MacOS",
    "Operating System :: Microsoft :: Windows",
    "Programming Language :: C++",
    "Programming Language :: Python :: 3",
    "Programming Language :: Python :: 3.10",
    "Programming Language :: Python :: 3.11",
    "Programming Language :: Python :: 3.12",
    "Programming Language :: Python :: 3.13",
    "Programming Language :: Python :: 3.14",
    "Topic :: Scientific/Engineering :: Mathematics",
    "Topic :: Scientific/Engineering :: Bio-Informatics",
]
dependencies = ["numpy>=1.24", "sympy>=1.12", "scipy>=1.11"]

[project.urls]
Homepage = "https://github.com/dModverse/symident"
Documentation = "https://dmodverse.github.io/symident/"
Source = "https://github.com/dModverse/symident"
Issues = "https://github.com/dModverse/symident/issues"

[project.optional-dependencies]
petab = ["python-libsbml>=5.20", "pyyaml>=6"]
test = ["pytest>=7", "pytest-xdist", "pytest-timeout", "python-libsbml>=5.20", "pyyaml>=6"]
docs = ["sphinx>=8", "numpydoc", "pydata-sphinx-theme", "myst-parser"]

[tool.scikit-build]
wheel.packages = ["src/symident"]
cmake.build-type = "Release"
sdist.exclude = ["tests/data"]

[tool.cibuildwheel]
build = "cp310-* cp311-* cp312-* cp313-* cp314-*"
skip = ["*-musllinux_*", "*-win32", "*-manylinux_i686"]
# SciPy ships no wheels for manylinux2014 any more; the test install would build it
manylinux-x86_64-image = "manylinux_2_28"
manylinux-aarch64-image = "manylinux_2_28"
test-requires = ["pytest", "pytest-xdist", "pytest-timeout", "python-libsbml", "pyyaml"]
# the full suite on the oldest and the newest Python; the wheels of all are built
test-skip = "cp311-* cp312-* cp313-*"
test-command = 'pytest -q -n auto {project}/tests'

[tool.pytest.ini_options]
testpaths = ["tests"]
# a test that runs past this many seconds is a failure, not a hang
timeout = 900

[tool.ruff]
line-length = 120
target-version = "py310"

[tool.ruff.lint]
select = ["E", "F", "W", "I", "B", "UP", "N8"]
ignore = ["E741", "N802", "N803", "N806", "B905", "UP031", "B023"]