BUG Incorrect operations after loading AGP

[AntonZamyatin]

On low resolution some scaffolds are not reoriented as they must be. But in higher resolutions all ok

[AntonZamyatin]

This happens after manual operations too

[AxisAlexNT]

Confirm having this issue in 1.0.30-5636a30-webui_d454f01 with atrop_EBRE after applying AGP and in mopti_male after applying AGP and reversing three leftmost scaffolds.