xnat-project-visualization/command.json at master · cmoore01/xnat-project-visualization · GitHub

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{
  "name": "xnat-project-visualization",
  "description": "Produces various visuals representing different components of an XNAT study (project).",
  "version": "1.0",
  "schema-version": "1.0",
  "type": "docker",
  "image": "greppy/xnat-project-visualization",
  "override-entrypoint": true,
  "command-line": "groovy VisualizeXnat.groovy -u $XNAT_USER -p $XNAT_PASS -s $XNAT_HOST -j #id# -c #charts# -o /output",
  "working-directory": "/home",
  "mounts": [
    {
      "name": "tex-out",
      "writable": "true",
      "path": "/output"
    }
  ],
  "inputs": [
    {
      "name": "id",
      "description": "Project ID extracted from wrapper inputs",
      "type": "string",
      "required": "true",
      "user-settable": false
    },
    {
      "name": "charts",
      "description": "Comma-separated list of integers, representing the desired charts to generate.",
      "type": "string",
      "user-settable": true,
      "required": true
    }
  ],
  "outputs": [
    {
      "name": "tex",
      "description": "The created TeX source files and PDFs",
      "mount": "tex-out",
      "required": "true"
    }
  ],
  "xnat": [
    {
      "name": "xnat-project-visualization",
      "description": "Produces various visuals representing different components of an XNAT study (project).",
      "contexts": [
        "xnat:projectData"
      ],
      "external-inputs": [
        {
          "name": "project",
          "description": "The project to build stats from.",
          "type": "Project",
          "required": true,
          "load-children": false
        }
      ],
      "derived-inputs": [
        {
          "name": "project-id",
          "description": "ID derived from project.",
          "required": true,
          "derived-from-wrapper-input": "project",
          "derived-from-xnat-object-property": "id",
          "provides-value-for-command-input": "id"
        }
      ],
      "output-handlers": [
        {
          "name": "tex-resource",
          "accepts-command-output": "tex",
          "as-a-child-of-wrapper-input": "project",
          "type": "Resource",
          "label": "TeX"
        }
      ]
    }
  ]
}