diff --git a/provisional-ratio-curves/.gitignore b/provisional-ratio-curves/.gitignore deleted file mode 100644 index 50e8752..0000000 --- a/provisional-ratio-curves/.gitignore +++ /dev/null @@ -1,5 +0,0 @@ -# excel files -*.xlsx - -# png files -*.png diff --git a/provisional-ratio-curves/README.md b/provisional-ratio-curves/README.md deleted file mode 100644 index 3e2461e..0000000 --- a/provisional-ratio-curves/README.md +++ /dev/null @@ -1,17 +0,0 @@ -# Ratio Curve Analysis - -We run `provisional-ratio-curves.R` every time valuations finishes desk review for a town -that's about to mail and sends us their provisional values. All they need to -provide us is an excel sheet with two columns: `PIN` and `Desk Review Value`. -- The sheet can contain more columns than that, they'll just be ignored. -- Before running the R script make sure the excel workbook is -in `O:\CCAODATA\recurring-data-requests\provisional-ratio-curves\input`, labeled using the -established schema in that folder (`town_code-town_name.xlsx`), and that there -are in fact `PIN` and `Desk Review Value` columns or the script will throw an -error. -- Run the script in a local installation of RStudio, rather than on the server, -since the script needs to read from the O Drive and write to it - - If you can't run the script locally, you can also just edit the input and output - paths as defined in the script to write to a relative path, and then copy the input - and output files between your machine and the server -- Output will show up in `O:\CCAODATA\recurring-data-requests\provisional-ratio-curves\output` diff --git a/provisional-ratio-curves/provisional-ratio-curves.R b/provisional-ratio-curves/provisional-ratio-curves.R deleted file mode 100644 index 5e4ae34..0000000 --- a/provisional-ratio-curves/provisional-ratio-curves.R +++ /dev/null @@ -1,278 +0,0 @@ -# Setup ---- - -library(arrow) -library(assessr) -library(ccao) -library(colorspace) -library(DBI) -library(dplyr) -library(ggplot2) -library(ggspatial) -library(glue) -library(noctua) -library(openxlsx) -library(prettymapr) -library(readr) -library(purrr) -library(scales) -library(stringr) -library(sf) -library(tidyr) - -noctua_options(unload = TRUE) -AWS_ATHENA_CONN_NOCTUA <- dbConnect(noctua::athena(), rstudio_conn_tab = FALSE) - -year <- format(Sys.Date(), "%Y") - -# These files live on the O drive in -# O:/CCAODATA/recurring-data-requests/provisional-ratio-curves/. Since -# that isn't accessible from the server they need to be copied locally or run -# from a local machine. They MUST be named according to the current naming -# scheme, and there must be PIN and Desk Review Value columns -data_path <- "O:/CCAODATA/recurring-data-requests/provisional-ratio-curves" -input_path <- file.path(data_path, "input", year) -output_path <- file.path(data_path, "output", year) -files_in <- list.files(input_path, full.names = TRUE, pattern = "\\.xlsx$") - -# Flatfile ---- - -# Read in desk review workbooks, keep PIN and Desk Review Value columns. -dr_vals <- map(files_in, \(x) { - read.xlsx(x, sheet = 1) %>% - tibble(.name_repair = "unique") %>% - select( - pin = PIN, - desk_review_value = Desk.Review.Value - ) -}) %>% - bind_rows() - -# Grab a list of all towns we're processing to use in the SQL query. This is -# based on the first two characters of the file name, which should be the -# township code. Input files *must* be named correctly. -dr_towns <- substr(basename(files_in), 1, 2) -if (!all(dr_towns %in% ccao::town_dict$township_code)) { - stop("One or more township codes in the input files are not valid.") -} - -# This SQL query will return townships, neighborhoods, and model values for -# every PIN, as well as any associated sales used for training -model_vals <- dbGetQuery( - conn = AWS_ATHENA_CONN_NOCTUA, - glue_sql( - read_file("provisional-ratio-curves.sql"), - .con = AWS_ATHENA_CONN_NOCTUA - ) -) - -# Attach dr and model values to calculate ratios -all_ratios <- dr_vals %>% - # Valuations provides a bunch of parcels of classes that are not part of the - # modeling pipeline. We strip these parcels out of the analysis. - inner_join( - model_vals %>% - select(pin) - ) %>% - full_join(model_vals, by = "pin") %>% - # Define an excluded sale as one that has a sale price but no provided desk - # review value. - mutate( - sale_excluded = if_else(is.na(sale_price), NA, is.na(desk_review_value)) - ) - -walk(unique(all_ratios$township_name), \(x) { - # Construct list for outputting multisheet .xlsx - output <- list() - output$`All Parcels` <- all_ratios %>% - filter(township_name == x) %>% - select(-township_name) %>% - mutate( - price_decile = ntile( - if_else(sale_excluded %in% TRUE, NA_real_, sale_price), - 10 - ), - model_sale_ratio = model_value / sale_price, - desk_review_sale_ratio = desk_review_value / sale_price - ) - - # Summarize ratios and price ranges by decile for .xlsx output - output$`Ratio Deciles` <- output$`All Parcels` %>% - filter(!is.na(sale_price), !sale_excluded) %>% - summarize( - model_ratio = median(model_sale_ratio), - model_cod = assessr::cod(model_sale_ratio), - desk_review_ratio = median(desk_review_sale_ratio), - desk_review_cod = assessr::cod(desk_review_sale_ratio), - price_range = paste( - scales::dollar(min(sale_price)), - scales::dollar(max(sale_price)), - sep = "-" - ), - number_of_sales = n(), - .by = price_decile - ) %>% - arrange(price_decile) %>% - mutate(across(model_ratio:desk_review_cod, ~ round(.x, digits = 6))) %>% - rename_with(~ str_to_title(gsub("_", " ", .x))) - - # Calculate vertical equity metrics for .xlsx output - output$`Town-Level Stats` <- output$`All Parcels` %>% - filter(!is.na(sale_price), !sale_excluded) %>% - summarize( - model_ratio = median(model_sale_ratio), - model_cod = assessr::cod(model_sale_ratio), - model_prd = assessr::prd(model_value, sale_price), - model_prb = assessr::prb(model_value, sale_price), - model_mki = assessr::mki(model_value, sale_price), - desk_review_ratio = median(desk_review_sale_ratio), - desk_review_cod = assessr::cod(desk_review_sale_ratio), - desk_review_prd = assessr::prd(desk_review_value, sale_price), - desk_review_prb = assessr::prb(desk_review_value, sale_price), - desk_review_mki = assessr::mki(desk_review_value, sale_price), - price_range = paste( - scales::dollar(min(sale_price)), - scales::dollar(max(sale_price)), - sep = "-" - ), - number_of_sales = n() - ) %>% - mutate(across(model_ratio:desk_review_mki, ~ round(.x, digits = 6))) %>% - rename_with(~ str_to_title(gsub("_", " ", .x))) - - output$`All Parcels` <- output$`All Parcels` %>% - rename_with(~ str_to_title(gsub("_", " ", .x))) - - output %>% - write.xlsx(file.path(output_path, paste0(gsub(" ", "_", x), ".xlsx"))) - - # Pivot decile data for graph - decile_ratios <- output$`Ratio Deciles` %>% - select(`Price Decile`, `Model Ratio`, `Desk Review Ratio`) %>% - pivot_longer( - cols = c("Model Ratio", "Desk Review Ratio"), - names_to = "Stage", - values_to = "Sale Ratio" - ) - - # Build x-axis labels with abbreviated price ranges per decile - axis_labels <- output$`All Parcels` %>% - filter(!is.na(`Sale Price`), !`Sale Excluded`) %>% - summarize( - min_price = min(`Sale Price`), - max_price = max(`Sale Price`), - .by = `Price Decile` - ) %>% - arrange(`Price Decile`) %>% - mutate(label = paste0( - `Price Decile`, "\n", - scales::dollar(min_price, scale_cut = scales::cut_short_scale()), - "\u2013\n", - scales::dollar(max_price, scale_cut = scales::cut_short_scale()) - )) %>% - { - setNames(.$label, .$`Price Decile`) - } - - # Graph ---- - - # Create ratio curves for both stages - y_min <- min(decile_ratios$`Sale Ratio`, 0.7, na.rm = TRUE) - y_max <- max(decile_ratios$`Sale Ratio`, 1.3, na.rm = TRUE) - - ggplot(decile_ratios, aes( - x = `Price Decile`, - y = `Sale Ratio`, - group = Stage, - color = Stage, - label = round(`Sale Ratio`, 2) - )) + - # IAAO dotted range - geom_hline(yintercept = 1, color = "darkgreen", linewidth = 1) + - geom_hline( - yintercept = 0.9, linetype = "dotted", color = "black", linewidth = 0.8 - ) + - geom_hline( - yintercept = 1.1, linetype = "dotted", color = "black", linewidth = 0.8 - ) + - annotate( - "text", - x = 1, y = 1.11, - label = "IAAO Range (0.9 - 1.1)", - hjust = 0, - vjust = -0.5, - size = 4 - ) + - geom_line(linewidth = 1) + - geom_label(show.legend = FALSE) + - theme_minimal() + - theme(axis.text.x = element_text(size = 8)) + - coord_cartesian(ylim = c(y_min, y_max)) + - scale_y_continuous( - breaks = seq(floor(y_min * 10) / 10, - ceiling(y_max * 10) / 10, - by = 0.1 - ) - ) + - scale_x_continuous(breaks = seq(1, 10, by = 1), labels = axis_labels) + - ggtitle( - label = paste0("Sale Ratios for ", x, " Township"), - subtitle = "Model and Desk Review Values" - ) - - ggsave( - file.path(output_path, paste0(gsub(" ", "_", x), "_ratio_curve.png")), - bg = "white" - ) - - # Maps ---- - - # Gather neighborhood polygons - neighborhoods <- ccao::nbhd_shp %>% - filter(township_name == x) %>% - select(town_nbhd, geometry) - - map_data <- output$`All Parcels` %>% - filter(!isTRUE(`Sale Excluded`)) %>% - select( - `Neighborhood Number`, - `Model Sale Ratio`, - `Desk Review Sale Ratio` - ) %>% - summarize( - `Model` = median(`Model Sale Ratio`, na.rm = TRUE), - `Desk Review` = median(`Desk Review Sale Ratio`, na.rm = TRUE), - .by = `Neighborhood Number` - ) %>% - pivot_longer( - cols = c("Desk Review", "Model"), - names_to = "Stage", - values_to = "Median Sale Ratio" - ) %>% - mutate( - Stage = factor(Stage, levels = c("Model", "Desk Review")), - `Neighborhood Number` = gsub("-", "", `Neighborhood Number`) - ) %>% - left_join(neighborhoods, c("Neighborhood Number" = "town_nbhd")) %>% - st_as_sf(crs = 4326) - - ggplot() + - annotation_map_tile(type = "cartolight", zoomin = 0) + - geom_sf( - data = map_data, - aes(fill = `Median Sale Ratio`), - alpha = 0.8, - linewidth = 0.1 - ) + - scale_fill_continuous_diverging( - palette = "Purple-Green", mid = 1, rev = TRUE, alpha = 0.8 - ) + - theme_void() + - labs(fill = "Median Ratio") + - facet_grid(cols = vars(Stage)) + - theme(strip.text.x = element_text(size = 14)) - - ggsave( - file.path(output_path, paste0(gsub(" ", "_", x), "_map.png")), - 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1) + +town_name <- ccao::town_dict %>% + filter(township_code == town_code) %>% + pull(township_name) %>% + first() + + +# Read desk review inputs +dr_wb <- loadWorkbook(input_file) +dr_vals <- read.xlsx(dr_wb, sheet = 1) %>% + tibble(.name_repair = "unique") %>% + select(pin = PIN, desk_review_FMV = Desk.Review.Value) + +# Athena: pull model values and the residential PIN universe +noctua_options(unload = TRUE) +conn <- dbConnect(noctua::athena(), rstudio_conn_tab = FALSE) + +model_vals <- dbGetQuery( + conn = conn, + glue_sql( + read_file("ratio-analysis.sql"), + .con = conn + ) +) %>% + rename_with(tolower) + +dbDisconnect(conn) + +# Join and compute ratios / price deciles +all_parcels <- dr_vals %>% + inner_join(select(model_vals, pin), by = "pin") %>% + full_join(model_vals, by = "pin") %>% + rename(model_FMV = model_value) %>% + filter(township_name == town_name) %>% + mutate( + sale_date = as.Date(sale_date), + sale_excluded = if_else(is.na(sale_price), NA, is.na(desk_review_FMV)), + price_decile = ntile( + if_else(sale_excluded %in% TRUE, NA_real_, sale_price), 10 + ), + model_sale_ratio = model_FMV / sale_price, + desk_review_sale_ratio = desk_review_FMV / sale_price + ) + +# Compute statistics +sales_df <- all_parcels %>% + filter(!is.na(sale_price), !sale_excluded %in% TRUE) + +township_stats <- sales_df %>% + summarize( + model_ratio = median(model_sale_ratio, na.rm = TRUE), + model_cod = assessr::cod(model_sale_ratio), + model_prd = assessr::prd(model_FMV, sale_price), + model_prb = assessr::prb(model_FMV, sale_price), + model_mki = assessr::mki(model_FMV, sale_price), + desk_review_ratio = median(desk_review_sale_ratio, na.rm = TRUE), + desk_review_cod = assessr::cod(desk_review_sale_ratio), + desk_review_prd = assessr::prd(desk_review_FMV, sale_price), + desk_review_prb = assessr::prb(desk_review_FMV, sale_price), + desk_review_mki = assessr::mki(desk_review_FMV, sale_price), + price_range = paste( + dollar(min(sale_price)), + dollar(max(sale_price)), + sep = "–" + ) + ) + +decile_stats <- sales_df %>% + summarize( + model_ratio = median(model_sale_ratio, na.rm = TRUE), + desk_review_ratio = median(desk_review_sale_ratio, na.rm = TRUE), + price_range = paste( + dollar(min(sale_price)), + dollar(max(sale_price)), + sep = "–" + ), + number_of_sales = n(), + .by = price_decile + ) %>% + arrange(price_decile) + +# Methods summary values +n_original_sales <- sum(!is.na(all_parcels$sale_price)) +n_final_sales <- nrow(sales_df) +n_excluded_sales <- n_original_sales - n_final_sales +n_total_pins <- nrow(all_parcels) + +sale_dates <- all_parcels %>% + filter(!is.na(sale_date)) %>% + pull(sale_date) +min_sale_date <- format(min(sale_dates), "%B %d, %Y") +max_sale_date <- format(max(sale_dates), "%B %d, %Y") + + +metric_meta <- tibble( + name = c("Median Ratio", "COD", "PRD", "PRB", "MKI"), + digits = c(2, 2, 2, 2, 2), + low = c(0.90, 5, 0.98, -0.05, 0.95), + high = c(1.10, 15, 1.03, 0.05, 1.05) +) %>% + mutate( + mid = (low + high) / 2, + half_span = (high - low) / 2, + standard_label = case_when( + name == "PRB" ~ sprintf("$\\pm$%.2f", high), + name == "COD" ~ sprintf("%.1f -- %.1f", low, high), + TRUE ~ sprintf("%.2f -- %.2f", low, high) + ) + ) + +# Color palette that standardizes colors throughout the text +pal <- list( + # Used for metrics + pass = "A8DDB5", + fail = "FDBB84", + iaao_band = "#A8DDB5", + # Model vs desk review charts + model = "#A569BD", + desk_review = "#2C2C2C", + # Neighborhods without sales + ratio_na = "EEEEEE", + # Gradients for map and nbhd metrics + ratio_colors = c("4575B4", "74ADD1", "66BD63", "FC8D59", "D73027"), + ratio_values = local({ + low <- 0.90 + high <- 1.10 + # EPS provides a small offset which creates an unseen gradient. + eps <- 0.0001 + c(low - 0.20, low - eps, low + eps, high - eps, high + eps, high + 0.20) + }) +) + +# Colors the cell green (pass) or orange (fail) based on whether +# value meets the IAAO standard for the given metric. +iaao_color_cell <- function(metric, value) { + metric_row <- metric_meta[metric_meta$name == metric, ] + passes <- switch(metric, + `Median Ratio` = med_ratio_met(value), + COD = cod_met(value), + PRD = prd_met(value), + PRB = prb_met(value), + MKI = mki_met(value) + ) + value <- round(value, metric_row$digits) + hex <- if (passes) pal$pass else pal$fail + paste0("\\cellcolor[HTML]{", hex, "} ", value) +} + +# Maps a sale ratio to one of five hex color codes representing assessment +# quality bands: dark blue, light blue, green, orange, or red. +ratio_to_hex <- function(ratio) { + rc <- pal$ratio_colors + case_when( + ratio < 0.80 ~ rc[1], + ratio < 0.90 ~ rc[2], + # Passing between .9 and 1.1 + ratio <= 1.10 ~ rc[3], + ratio <= 1.20 ~ rc[4], + TRUE ~ rc[5] + ) +} + +# Returns a string for a ratio value in the neighborhood table. +color_ratio_cell <- function(ratio, digits = 2) { + value <- round(ratio, digits) + hex <- ratio_to_hex(ratio) + paste0("\\cellcolor[HTML]{", hex, "} ", value) +} + +# Shared ggplot fill scale for the ratio map panels. rc[3] is repeated so the +# green "within standard" band gets a flat color rather than a gradient. The +# `squish` maps values outside ratio_limits to the nearest color instead of NA. +ratio_fill_scale <- function(name = "Median\nRatio") { + rc <- paste0("#", pal$ratio_colors) + med_ratio <- metric_meta[metric_meta$name == "Median Ratio", ] + low_lbl <- sprintf("%.2f", med_ratio$low) + high_lbl <- sprintf("%.2f", med_ratio$high) + scale_fill_gradientn( + colors = c(rc[1], rc[2], rc[3], rc[3], rc[4], rc[5]), + values = rescale(pal$ratio_values), + limits = range(pal$ratio_values), + oob = squish, + na.value = paste0("#", pal$ratio_na), + breaks = pal$ratio_values, + labels = c( + sprintf("%.2f", pal$ratio_values[1]), + low_lbl, low_lbl, high_lbl, high_lbl, + sprintf("%.2f", pal$ratio_values[6]) + ), + name = name + ) +} +``` + + +This is a ratio analysis for **`r town_name` Township** for the `r analysis_year` +assessment cycle. The initial sale sample had +**`r format(n_original_sales, big.mark = ",")`** sales: this excludes +statistical outliers flagged by the Data department, and had transaction +dates ranging from `r min_sale_date` to `r max_sale_date`. From these, +**`r format(n_excluded_sales, big.mark = ",")`** additional sales were excluded +as outliers by Valuations analysts.This leaves a **final sample of +`r format(n_final_sales, big.mark = ",")` sales**. This universe includes Single and Multifamily parcels (up to +6 units) and excludes condo units. Prices range from +`r township_stats$price_range` and are not time-adjusted. The township +contains **`r format(n_total_pins, big.mark = ",")` residential +parcels**. + +This analysis compares ratio statistics from two stages: +(1) **Model** values, which are the output of the model, and +(2) **Desk Review** values, which reflect manual adjustments by staff. + +```{r tbl-1} +#| tbl-cap: >- +#| Town-Level IAAO Statistics.\newline Green shading meets IAAO +#| standard; orange shading does not. +#| tbl-pos: H + +# Outputs were sometimes being placed in alphabetical +# vs stated order so this just standardizes it. +display_order <- c("Median Ratio", "PRB", "PRD", "COD", "MKI") +met_fac <- function(x) factor(x, levels = display_order) + +iaao_table <- data.frame( + Metric = display_order, + `IAAO Standard` = metric_meta$standard_label[ + match(display_order, metric_meta$name) + ], + Model = c( + iaao_color_cell("Median Ratio", township_stats$model_ratio), + iaao_color_cell("PRB", township_stats$model_prb), + iaao_color_cell("PRD", township_stats$model_prd), + iaao_color_cell("COD", township_stats$model_cod), + iaao_color_cell("MKI", township_stats$model_mki) + ), + `Desk Review` = c( + iaao_color_cell("Median Ratio", township_stats$desk_review_ratio), + iaao_color_cell("PRB", township_stats$desk_review_prb), + iaao_color_cell("PRD", township_stats$desk_review_prd), + iaao_color_cell("COD", township_stats$desk_review_cod), + iaao_color_cell("MKI", township_stats$desk_review_mki) + ), + check.names = FALSE +) + +kable( + iaao_table, + format = "latex", + escape = FALSE, + booktabs = FALSE, + linesep = "", + col.names = c("Metric", "IAAO Standard", "Model", "Desk Review"), + align = c("l", "c", "r", "r") +) +``` + +```{r fig-2} +#| fig-cap: >- +#| IAAO Metrics: Model vs. Desk Review.\newline Green shaded band +#| shows the IAAO acceptable range for each metric. +#| fig-pos: H +#| fig-cap-location: top +#| fig-height: 3.5 +#| fig-width: 6.5 + +township_stats_wide <- tibble( + Metric = met_fac(display_order), + Model = c( + township_stats$model_ratio, township_stats$model_prb, + township_stats$model_prd, township_stats$model_cod, + township_stats$model_mki + ), + `Desk Review` = c( + township_stats$desk_review_ratio, township_stats$desk_review_prb, + township_stats$desk_review_prd, township_stats$desk_review_cod, + township_stats$desk_review_mki + ) +) %>% + mutate(gap = `Desk Review` - Model) + +township_stats_long <- township_stats_wide %>% + pivot_longer( + c(Model, `Desk Review`), + names_to = "Stage", values_to = "Value" + ) %>% + mutate(Stage = factor(Stage, levels = c("Model", "Desk Review"))) + +iaao_bands <- select(metric_meta, Metric = name, xmin = low, xmax = high) %>% + mutate(Metric = met_fac(Metric)) + +iaao_meta <- select(metric_meta, Metric = name, mid, half_span) %>% + mutate(Metric = met_fac(Metric)) + +sym_anchors <- township_stats_long %>% + left_join(iaao_meta, by = "Metric") %>% + mutate(dev = abs(Value - mid)) %>% + group_by(Metric, mid, half_span) %>% + summarize( + max_dev = max(dev, na.rm = TRUE), + .groups = "drop" + ) %>% + mutate( + half_ax = pmax(half_span, max_dev) * 1.15, + x_low = mid - half_ax, + x_high = mid + half_ax + ) %>% + select(Metric, x_low, x_high) %>% + pivot_longer( + c(x_low, x_high), + names_to = "side", values_to = "x" + ) %>% + select(Metric, x) + +scale_anchors <- bind_rows( + sym_anchors, + tibble(Metric = "COD", x = 0) +) %>% + mutate(Metric = met_fac(Metric)) + +p_main <- ggplot() + + geom_blank(data = township_stats_long, aes(x = Value, y = 1)) + + geom_point( + data = scale_anchors, + aes(x = x, y = 1), + size = 0, + alpha = 0 + ) + + geom_rect( + data = iaao_bands, + aes(xmin = xmin, xmax = xmax, ymin = 0.1, ymax = 1.9), + fill = pal$iaao_band, alpha = 0.45 + ) + + geom_segment( + data = township_stats_wide, + aes(x = Model, xend = `Desk Review`, y = 1, yend = 1), + color = "gray40", linewidth = 2, lineend = "round" + ) + + geom_point( + data = township_stats_long, + aes(x = Value, y = 1, color = Stage, shape = Stage), + size = 5 + ) + + facet_wrap(~Metric, scales = "free_x", ncol = 1, strip.position = "left") + + scale_color_manual( + values = c("Model" = pal$model, "Desk Review" = pal$desk_review) + ) + + scale_shape_manual(values = c("Model" = 16, "Desk Review" = 17)) + + scale_y_continuous(limits = c(0, 2)) + + coord_cartesian(clip = "off") + + theme_minimal(base_size = 11) + + theme( + axis.text.y = element_blank(), + axis.ticks.y = element_blank(), + panel.grid.major.y = element_blank(), + panel.grid.minor.y = element_blank(), + strip.text.y.left = element_text( + face = "bold", size = 11, angle = 0, hjust = 1 + ), + strip.placement = "outside", + legend.position = "bottom", + plot.margin = margin(t = 20, r = 0, b = 5, l = 5, unit = "pt") + ) + + labs(x = NULL, y = NULL, color = "Stage", shape = "Stage") + +gap_data <- township_stats_wide %>% + mutate( + lhs = sprintf("%.2f", Model), + rhs = sprintf("→ %.2f (%+.2f)", `Desk Review`, gap) + ) + +p_gap <- ggplot(gap_data, aes(y = 1)) + + geom_text( + aes(x = 0, label = lhs), + color = pal$model, fontface = "bold", size = 3, hjust = 1 + ) + + geom_text( + aes(x = 0, label = rhs), + color = "#000000", fontface = "bold", size = 3, hjust = 0 + ) + + facet_wrap(~Metric, ncol = 1) + + scale_y_continuous(limits = c(0, 2)) + + coord_cartesian(xlim = c(-0.3, 0.9)) + + theme_void() + + theme( + strip.text = element_blank(), + legend.position = "none", + panel.background = element_rect(fill = "#EFEFE3", color = NA), + plot.margin = margin(t = 20, r = 5, b = 5, l = 0, unit = "pt"), + plot.title = element_text(size = 9, hjust = 0.5, face = "bold") + ) + + labs(title = "Change") + +p_main + p_gap + plot_layout(widths = c(7, 3)) +``` + +```{r desc-helpers} +no_sale <- all_parcels %>% filter(is.na(sale_price)) + +fmt_n <- function(x) format(x, big.mark = ",", scientific = FALSE) +fmt_dol <- function(x) { + paste0("\\$", format(round(x), big.mark = ",", scientific = FALSE)) +} +fmt_pct <- function(changed, total) { + paste0(round(changed / total * 100, 1), "\\%") +} +n_changed <- function(df) { + sum(!is.na(df$model_FMV) & !is.na(df$desk_review_FMV) & + df$model_FMV != df$desk_review_FMV) # nolint: indentation_linter. +} +``` + +{{< pagebreak >}} + +```{r tbl-3} +#| tbl-cap: >- +#| Fair Market Values by Group.\newline Model and desk review fair +#| market values for properties with qualifying arm's-length sales +#| (Sold), sales excluded as outliers by desk review (Excluded), +#| properties without a recorded sale (Unsold), and all residential +#| parcels (All). Sold + Excluded + Unsold sums to All. +#| tbl-pos: H + +excluded <- all_parcels %>% filter(sale_excluded %in% TRUE) +groups <- list( + Sold = sales_df, + Excluded = excluded, + Unsold = no_sale, + All = all_parcels +) + +mv_table <- tibble( + Group = names(groups), + N = sapply(groups, \(df) fmt_n(nrow(df))), + `Median Model FMV` = sapply( + groups, \(df) fmt_dol(median(df$model_FMV, na.rm = TRUE)) + ), + `Median DR FMV` = sapply( + groups, \(df) fmt_dol(median(df$desk_review_FMV, na.rm = TRUE)) + ), + `Mean Model FMV` = sapply( + groups, \(df) fmt_dol(mean(df$model_FMV, na.rm = TRUE)) + ), + `Mean DR FMV` = sapply( + groups, \(df) fmt_dol(mean(df$desk_review_FMV, na.rm = TRUE)) + ) +) %>% + mutate(across( + c(`Median DR FMV`, `Mean DR FMV`), + # Desk review FMVs are absent for Excluded parcels + \(x) if_else(Group == "Excluded", "excluded", x) + )) + +kable( + mv_table, + format = "latex", + escape = FALSE, + booktabs = FALSE, + linesep = "", + align = c("l", "r", "r", "r", "r", "r") +) +``` + +```{r tbl-4} +#| tbl-cap: >- +#| Desk Review Changes by Group.\newline Number and share of +#| properties whose value was changed by desk review. +#| tbl-pos: H + +changes_table <- tibble( + Group = c("Sold", "Excluded", "Unsold", "All"), + Properties = c( + fmt_n(nrow(sales_df)), + fmt_n(nrow(excluded)), + fmt_n(nrow(no_sale)), + fmt_n(nrow(all_parcels)) + ), + `Desk Review Changes` = c( + fmt_n(n_changed(sales_df)), + fmt_n(n_changed(excluded)), + fmt_n(n_changed(no_sale)), + fmt_n(n_changed(all_parcels)) + ), + `\\% Changed` = c( + fmt_pct(n_changed(sales_df), nrow(sales_df)), + fmt_pct(n_changed(excluded), nrow(excluded)), + fmt_pct(n_changed(no_sale), nrow(no_sale)), + fmt_pct(n_changed(all_parcels), nrow(all_parcels)) + ) +) %>% + mutate(across( + c(`Desk Review Changes`, `\\% Changed`), + # Desk review FMVs are absent for Excluded parcels + \(x) if_else(Group == "Excluded", "excluded", x) + )) + +kable( + changes_table, + format = "latex", + escape = FALSE, + booktabs = FALSE, + linesep = "", + align = c("l", "r", "r", "r") +) +``` + +```{r nbhd-ratios-prep} +nbhd_ratios <- all_parcels %>% + filter(!is.na(sale_price), !sale_excluded %in% TRUE) %>% + mutate(neighborhood_number = gsub("-", "", neighborhood_number)) %>% + summarize( + model_ratio = median(model_sale_ratio, na.rm = TRUE), + dr_ratio = median(desk_review_sale_ratio, na.rm = TRUE), + n_sales = n(), + .by = neighborhood_number + ) +``` + +{{< pagebreak >}} + +```{r fig-5} +#| fig-cap: >- +#| Sale Price Ratio Curve.\newline Each labeled point is the median +#| ratio within that sale price decile. Dotted lines show the IAAO +#| acceptable range (0.9–1.1). +#| fig-pos: H +#| fig-cap-location: top +#| fig-height: 3.5 +#| fig-width: 7 + +decile_long <- decile_stats %>% + select(price_decile, model_ratio, desk_review_ratio) %>% + pivot_longer( + cols = c(model_ratio, desk_review_ratio), + names_to = "Stage", + values_to = "Sale Ratio" + ) %>% + mutate( + Stage = case_when( + Stage == "model_ratio" ~ "Model", + Stage == "desk_review_ratio" ~ "Desk Review" + ), + Stage = factor(Stage, levels = c("Model", "Desk Review")) + ) + +axis_labels <- all_parcels %>% + filter(!is.na(sale_price), !sale_excluded %in% TRUE, !is.na(price_decile)) %>% + summarize( + min_price = min(sale_price), + max_price = max(sale_price), + .by = price_decile + ) %>% + arrange(price_decile) %>% + mutate(label = paste0( + price_decile, "\n", + dollar(min_price, scale_cut = cut_short_scale()), + "–\n", + dollar(max_price, scale_cut = cut_short_scale()) + )) %>% + (\(df) setNames(df$label, df$price_decile))() + +y_min <- min(decile_long$`Sale Ratio`, 0.7, na.rm = TRUE) +y_max <- max(decile_long$`Sale Ratio`, 1.3, na.rm = TRUE) + +ggplot( + decile_long, + aes( + x = price_decile, + y = `Sale Ratio`, + group = Stage, + color = Stage, + label = round(`Sale Ratio`, 2) + ) +) + + annotate("rect", + xmin = -Inf, xmax = Inf, + ymin = metric_meta$low[metric_meta$name == "Median Ratio"], + ymax = metric_meta$high[metric_meta$name == "Median Ratio"], + fill = pal$iaao_band, alpha = 0.12 + ) + + geom_hline(yintercept = 1, color = "darkgreen", linewidth = 1) + + geom_hline( + yintercept = metric_meta$low[metric_meta$name == "Median Ratio"], + linetype = "dotted", color = "black", linewidth = 0.8 + ) + + geom_hline( + yintercept = metric_meta$high[metric_meta$name == "Median Ratio"], + linetype = "dotted", color = "black", linewidth = 0.8 + ) + + annotate("text", + x = 1, y = metric_meta$high[metric_meta$name == "Median Ratio"] + 0.01, + label = sprintf( + "IAAO Range (%.2f–%.2f)", + metric_meta$low[metric_meta$name == "Median Ratio"], + metric_meta$high[metric_meta$name == "Median Ratio"] + ), + hjust = 0, vjust = -0.4, size = 3.5 + ) + + geom_line(linewidth = 1) + + geom_label(show.legend = FALSE, size = 3) + + scale_color_manual( + values = c("Model" = pal$model, "Desk Review" = pal$desk_review) + ) + + scale_x_continuous(breaks = 1:10, labels = axis_labels) + + scale_y_continuous( + breaks = seq(floor(y_min * 10) / 10, ceiling(y_max * 10) / 10, by = 0.1) + ) + + coord_cartesian(ylim = c(y_min, y_max)) + + theme_minimal(base_size = 11) + + theme(axis.text.x = element_text(size = 7.5)) + + labs(x = "Sale Price Decile", y = "Median Sale Ratio", color = "Stage") +``` + +```{r tbl-6} +#| tbl-cap: 'Ratio Curve by Sale Price Decile' +#| tbl-pos: H +#| tbl-cap-location: top + +decile_display <- decile_stats %>% + select( + Decile = price_decile, + `Price Range` = price_range, + `N Sales` = number_of_sales, + `Model Ratio` = model_ratio, + `DR Ratio` = desk_review_ratio + ) %>% + mutate( + `Model Ratio` = round(`Model Ratio`, 3), + `DR Ratio` = round(`DR Ratio`, 3) + ) + +kable( + decile_display, + format = "latex", + escape = FALSE, + booktabs = TRUE, + linesep = "", + align = c("c", "l", "r", "r", "r") +) +``` + +```{r fig-7} +#| fig-cap: >- +#| Neighborhood Median Assessment Ratios.\newline Green (0.90–1.10) +#| meets the IAAO standard; Blue indicates under-assessment; Red +#| indicates over-assessment. +#| fig-pos: H +#| fig-cap-location: top +#| fig-height: 3.5 +#| fig-width: 8.5 +#| results: 'hide' + +neighborhoods <- ccao::nbhd_shp %>% + filter(township_name == town_name) %>% + select(town_nbhd, geometry) + +map_data <- neighborhoods %>% + left_join(nbhd_ratios, by = c("town_nbhd" = "neighborhood_number")) + +map_theme <- theme_void(base_size = 9) + + theme( + legend.position = "right", + plot.title = element_text(face = "bold", size = 10) + ) + +make_map <- function(col, title) { + ggplot() + + annotation_map_tile(type = "cartolight", zoomin = 0) + + geom_sf( + data = map_data, aes(fill = .data[[col]]), alpha = 0.85, linewidth = 0.1 + ) + + ratio_fill_scale() + + map_theme + + labs(title = title) +} + +map_model <- make_map("model_ratio", "Model") +map_dr <- make_map("dr_ratio", "Desk Review") + +grid.newpage() +print(map_model, vp = viewport( + x = 0, y = 0, width = 1 / 2, height = 1, + just = c("left", "bottom") +)) +print(map_dr, vp = viewport( + x = 1 / 2, y = 0, width = 1 / 2, height = 1, + just = c("left", "bottom") +)) +``` + + +```{r tbl-8} +#| tbl-cap: >- +#| Neighborhood-Level Median Ratios.\newline Blue indicates +#| under-assessment; Green (0.90–1.1) indicates within standard; +#| Red indicates over-assessment. +#| tbl-cap-location: top +#| tbl-pos: H + +all_nbhds <- all_parcels %>% + distinct(neighborhood_number) %>% + arrange(neighborhood_number) + +nbhd_table_data <- all_nbhds %>% + left_join(nbhd_ratios, by = "neighborhood_number") %>% + mutate( + `NBHD` = neighborhood_number, + `Model Ratio` = ifelse( + is.na(model_ratio), "---", color_ratio_cell(model_ratio) + ), + `DR Ratio` = ifelse( + is.na(dr_ratio), "---", color_ratio_cell(dr_ratio) + ), + `N Sales` = as.character(ifelse(is.na(n_sales), 0L, n_sales)) + ) %>% + select(`NBHD`, `Model Ratio`, `DR Ratio`, `N Sales`) + +# This allows us to separate the table in two halves, +# ideally keeping it on one final page for larger +# townships +n <- nrow(nbhd_table_data) +half <- ceiling(n / 2) +pad <- half - (n - half) + +right_half <- bind_rows( + nbhd_table_data[(half + 1):n, ], + if (pad > 0) { + tibble( + NBHD = rep("", pad), `Model Ratio` = rep("", pad), + `DR Ratio` = rep("", pad), `N Sales` = rep("", pad) + ) + } +) + +spacer <- tibble(` ` = rep("", half)) + +kable( + cbind(nbhd_table_data[1:half, ], spacer, right_half), + format = "latex", + escape = FALSE, + booktabs = FALSE, + linesep = "", + align = c("l", "r", "r", "r", "l", "l", "r", "r", "r"), + col.names = c( + "NBHD", "Model Ratio", "DR Ratio", "N Sales", "", + "NBHD", "Model Ratio", "DR Ratio", "N Sales" + ) +) +``` + +```{r export-excel} +#| include: false + +export_df <- all_parcels %>% + select( + PIN = pin, + Class = class, + `Neighborhood Code` = neighborhood_number, + `Model Value` = model_FMV, + `Sale Price` = sale_price, + `Sale Date` = sale_date, + `Sale Document Number` = sale_document_number, + `Sale Excluded` = sale_excluded, + `Price Decile` = price_decile, + `Model Sale Ratio` = model_sale_ratio, + `Desk Review Sale Ratio` = desk_review_sale_ratio + ) + +write.xlsx(export_df, paste0(tolower(town_name), ".xlsx"), overwrite = TRUE) +``` diff --git a/provisional-ratio-curves/provisional-ratio-curves.sql b/ratio-analysis/ratio-analysis.sql similarity index 88% rename from provisional-ratio-curves/provisional-ratio-curves.sql rename to ratio-analysis/ratio-analysis.sql index 9476dea..f007b25 100644 --- a/provisional-ratio-curves/provisional-ratio-curves.sql +++ b/ratio-analysis/ratio-analysis.sql @@ -8,7 +8,7 @@ WITH final_models AS ( UNNEST(final_model.township_code_coverage) AS towns (township_code) -- Year will need to be adjusted so that desk review to model values join in -- R script is 1 to 1. - WHERE final_model.year = CAST(YEAR(CURRENT_DATE) AS VARCHAR) + WHERE final_model.year = {analysis_year} -- noqa AND final_model.type = 'res' ), @@ -18,6 +18,7 @@ model_vals AS ( SELECT assessment_pin.meta_pin AS pin, assessment_pin.pred_pin_final_fmv_round AS model_value, + -- Outlier sale prices are already removed in pipeline assessment_pin.sale_ratio_study_price AS sale_price, assessment_pin.sale_ratio_study_date AS sale_date, assessment_pin.sale_ratio_study_document_num AS sale_document_number @@ -34,6 +35,7 @@ most_recent_pin AS ( SELECT uni.pin, uni.township_name, + uni.class, uni.nbhd_code AS neighborhood_number, ROW_NUMBER() OVER ( PARTITION BY @@ -46,15 +48,13 @@ most_recent_pin AS ( INNER JOIN ccao.class_dict ON uni.class = class_dict.class_code AND class_dict.modeling_group IN ('SF', 'MF', 'BB') - WHERE uni.year IN ( - CAST(YEAR(CURRENT_DATE) - 1 AS VARCHAR), - CAST(YEAR(CURRENT_DATE) AS VARCHAR) - ) - AND uni.township_code IN ({dr_towns*}) -- noqa + WHERE uni.year IN ({prior_year}, {analysis_year}) -- noqa + AND uni.township_code IN ({town_code}) -- noqa ) SELECT vpu.pin, + vpu.class, vpu.township_name, vpu.neighborhood_number, model_vals.model_value, diff --git a/ratio-analysis/readme.txt b/ratio-analysis/readme.txt new file mode 100644 index 0000000..18d986a --- /dev/null +++ b/ratio-analysis/readme.txt @@ -0,0 +1,19 @@ +This folder runs a ratio analysis comparing desk review values against model values for residential PINs, either for a single township or for every township at once. +Each input file must be an xlsx named ##-township.xlsx (e.g., 17-berwyn.xlsx) with PIN and Desk Review Value columns. + +To run a single township, render ratio-analysis.qmd in Quarto with the input_file parameter pointing to that township's xlsx file. +Example: + +library(quarto) +quarto_render( + "ratio-analysis.qmd", + execute_params = list(input_file = "input/2026/17-berwyn.xlsx"), + output_file = "berwyn_ratio_analysis.pdf" +) + +This produces berwyn_ratio_analysis.pdf in the current working directory. You can also render from a terminal instead: + +quarto render ratio-analysis.qmd -P input_file:input/2026/17-berwyn.xlsx --output berwyn_ratio_analysis.pdf + +To run every township at once, place each township's input file in input// and run render_all_files.R. +The analysis year is controlled by the ANALYSIS_YEAR variable in a .Renviron file. Make sure this file is updated at the beginning of the new modeling year. \ No newline at end of file diff --git a/ratio-analysis/render_all_files.R b/ratio-analysis/render_all_files.R new file mode 100644 index 0000000..9d234af --- /dev/null +++ b/ratio-analysis/render_all_files.R @@ -0,0 +1,66 @@ +# This file runs the ratio_analysis.qmd report for all files +# stored in the O drive in +# O:/CCAODATA/recurring-data-requests/ratio_analysis/. Since +# that isn't accessible from the server they need to be copied locally or run +# from a local machine. They MUST be named according to the current naming +# scheme, and there must be PIN and Desk Review Value columns +# +# The analysis year is set via the ANALYSIS_YEAR variable in .Renviron so +# that this script, ratio-analysis.qmd, and ratio-analysis.sql all stay in +# sync. Update .Renviron and restart R to change the year. + +library(quarto) + +library(assessr) +library(ccao) +library(DBI) +library(dplyr) +library(ggplot2) +library(ggspatial) +library(glue) +library(grid) +library(knitr) +library(noctua) +library(openxlsx) +library(patchwork) +library(readr) +library(scales) +library(sf) +library(tidyr) + +data_path <- "O:/CCAODATA/recurring-data-requests/ratio_analysis" +year <- Sys.getenv("ANALYSIS_YEAR") +if (!nzchar(year)) { + stop("ANALYSIS_YEAR is not set. Add it to .Renviron and restart R.") +} +input_path <- file.path(data_path, "input", year) +output_path <- file.path(data_path, "output", year) + +input_files <- list.files(input_path, pattern = "\\.xlsx$", full.names = TRUE) +# This is a test to make sure that the township number is valid +town_codes <- substr(basename(input_files), 1, 2) +if (!all(town_codes %in% ccao::town_dict$township_code)) { + stop("One or more township codes in the input files are not valid.") +} + +dir.create(output_path, recursive = TRUE, showWarnings = FALSE) + +for (f in input_files) { + # Grab the town code for the file that we are processing. + # The files in the folder must be named in the structure of + # ##-township.xlsx + town_code <- substr(basename(f), 1, 2) + town_name <- tolower(town_convert(town_code)) + out_name <- paste0(town_name, "_ratio_analysis.pdf") + message("Rendering PDF report for ", town_name) + # Render the report with the name of township_ratio_analysis.pdf + quarto_render( + "ratio-analysis.qmd", + execute_params = list(input_file = f), + output_file = out_name + ) + file.rename(out_name, file.path(output_path, out_name)) + # Output the .xlsx file with all PIN values + xlsx_name <- paste0(town_name, ".xlsx") + file.rename(xlsx_name, file.path(output_path, xlsx_name)) +} diff --git a/ratio-analysis/renv.lock b/ratio-analysis/renv.lock new file mode 100644 index 0000000..34be9b4 --- /dev/null +++ b/ratio-analysis/renv.lock @@ -0,0 +1,4535 @@ +{ + "R": { + "Version": "4.5.1", + "Repositories": [ + { + "Name": "CRAN", + "URL": "https://cloud.r-project.org" + } + ] + }, + "Packages": { + "DBI": { + "Package": "DBI", + "Version": "1.3.0", + "Source": "Repository", + "Title": "R Database Interface", + "Date": "2026-02-11", + "Authors@R": "c( person(\"R Special Interest Group on Databases (R-SIG-DB)\", role = \"aut\"), person(\"Hadley\", \"Wickham\", role = \"aut\"), person(\"Kirill\", \"Müller\", , \"kirill@cynkra.com\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-1416-3412\")), person(\"R Consortium\", role = \"fnd\") )", + "Description": "A database interface definition for communication between R and relational database management systems. 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Compared to other approaches 'cpp11' strives to be safe against long jumps from the C API as well as C++ exceptions, conform to normal R function semantics and supports interaction with 'ALTREP' vectors.", + "License": "MIT + file LICENSE", + "URL": "https://cpp11.r-lib.org, https://github.com/r-lib/cpp11", + "BugReports": "https://github.com/r-lib/cpp11/issues", + "Depends": [ + "R (>= 4.0.0)" + ], + "Suggests": [ + "bench", + "brio", + "callr", + "cli", + "covr", + "decor", + "desc", + "ggplot2", + "glue", + "knitr", + "lobstr", + "mockery", + "progress", + "rmarkdown", + "scales", + "Rcpp", + "testthat (>= 3.2.0)", + "tibble", + "utils", + "vctrs", + "withr" + ], + "VignetteBuilder": "knitr", + "Config/Needs/website": "tidyverse/tidytemplate", + "Config/testthat/edition": "3", + "Config/Needs/cpp11/cpp_register": "brio, cli, decor, desc, glue, tibble, vctrs", + "Encoding": "UTF-8", + "RoxygenNote": "7.3.3", + "NeedsCompilation": "no", + "Author": "Davis Vaughan [aut, cre] (ORCID: ), Jim Hester [aut] (ORCID: ), Romain François [aut] (ORCID: ), Benjamin Kietzman [ctb], Posit Software, PBC [cph, fnd]", + "Maintainer": "Davis Vaughan ", + "Repository": "CRAN" + }, + "crayon": { + "Package": "crayon", + "Version": "1.5.3", + "Source": "Repository", + "Title": "Colored Terminal Output", + "Authors@R": "c( person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Brodie\", \"Gaslam\", , \"brodie.gaslam@yahoo.com\", role = \"ctb\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", + "Description": "The crayon package is now superseded. Please use the 'cli' package for new projects. Colored terminal output on terminals that support 'ANSI' color and highlight codes. It also works in 'Emacs' 'ESS'. 'ANSI' color support is automatically detected. Colors and highlighting can be combined and nested. New styles can also be created easily. This package was inspired by the 'chalk' 'JavaScript' project.", + "License": "MIT + file LICENSE", + "URL": "https://r-lib.github.io/crayon/, https://github.com/r-lib/crayon", + "BugReports": "https://github.com/r-lib/crayon/issues", + "Imports": [ + "grDevices", + "methods", + "utils" + ], + "Suggests": [ + "mockery", + "rstudioapi", + "testthat", + "withr" + ], + "Config/Needs/website": "tidyverse/tidytemplate", + "Encoding": "UTF-8", + "RoxygenNote": "7.3.1", + "Collate": "'aaa-rstudio-detect.R' 'aaaa-rematch2.R' 'aab-num-ansi-colors.R' 'aac-num-ansi-colors.R' 'ansi-256.R' 'ansi-palette.R' 'combine.R' 'string.R' 'utils.R' 'crayon-package.R' 'disposable.R' 'enc-utils.R' 'has_ansi.R' 'has_color.R' 'link.R' 'styles.R' 'machinery.R' 'parts.R' 'print.R' 'style-var.R' 'show.R' 'string_operations.R'", + "NeedsCompilation": "no", + "Author": "Gábor Csárdi [aut, cre], Brodie Gaslam [ctb], Posit Software, PBC [cph, fnd]", + "Maintainer": "Gábor Csárdi ", + "Repository": "CRAN" + }, + "curl": { + "Package": "curl", + "Version": "7.1.0", + "Source": "Repository", + "Type": "Package", + "Title": "A Modern and Flexible Web Client for R", + "Authors@R": "c( person(\"Jeroen\", \"Ooms\", role = c(\"aut\", \"cre\"), email = \"jeroenooms@gmail.com\", comment = c(ORCID = \"0000-0002-4035-0289\")), person(\"Hadley\", \"Wickham\", role = \"ctb\"), person(\"Posit Software, PBC\", role = \"cph\"))", + "Description": "Bindings to 'libcurl' for performing fully configurable HTTP/FTP requests where responses can be processed in memory, on disk, or streaming via the callback or connection interfaces. Some knowledge of 'libcurl' is recommended; for a more-user-friendly web client see the 'httr2' package which builds on this package with http specific tools and logic.", + "License": "MIT + file LICENSE", + "SystemRequirements": "libcurl (>= 7.73): libcurl-devel (rpm) or libcurl4-openssl-dev (deb)", + "URL": "https://jeroen.r-universe.dev/curl", + "BugReports": "https://github.com/jeroen/curl/issues", + "Suggests": [ + "spelling", + "testthat (>= 1.0.0)", + "knitr", + "jsonlite", + "later", + "rmarkdown", + "httpuv (>= 1.4.4)", + "webutils" + ], + "VignetteBuilder": "knitr", + "Depends": [ + "R (>= 3.0.0)" + ], + "RoxygenNote": "7.3.2", + "Encoding": "UTF-8", + "Language": "en-US", + "NeedsCompilation": "yes", + "Author": "Jeroen Ooms [aut, cre] (ORCID: ), Hadley Wickham [ctb], Posit Software, PBC [cph]", + "Maintainer": "Jeroen Ooms ", + "Repository": "CRAN" + }, + "data.table": { + "Package": "data.table", + "Version": "1.18.4", + "Source": "Repository", + "Title": "Extension of `data.frame`", + "Depends": [ + "R (>= 3.4.0)" + ], + "Imports": [ + "methods" + ], + "Suggests": [ + "bit64 (>= 4.0.0)", + "bit (>= 4.0.4)", + "R.utils (>= 2.13.0)", + "xts", + "zoo (>= 1.8-1)", + "yaml", + "knitr", + "markdown" + ], + "Description": "Fast aggregation of large data (e.g. 100GB in RAM), fast ordered joins, fast add/modify/delete of columns by group using no copies at all, list columns, friendly and fast character-separated-value read/write. Offers a natural and flexible syntax, for faster development.", + "License": "MPL-2.0 | file LICENSE", + "URL": "https://r-datatable.com, https://Rdatatable.gitlab.io/data.table, https://github.com/Rdatatable/data.table", + "BugReports": "https://github.com/Rdatatable/data.table/issues", + "VignetteBuilder": "knitr", + "Encoding": "UTF-8", + "ByteCompile": "TRUE", + "Authors@R": "c( person(\"Tyson\",\"Barrett\", role=c(\"aut\",\"cre\"), email=\"t.barrett88@gmail.com\", comment = c(ORCID=\"0000-0002-2137-1391\")), person(\"Matt\",\"Dowle\", role=\"aut\", email=\"mattjdowle@gmail.com\"), person(\"Arun\",\"Srinivasan\", role=\"aut\", email=\"asrini@pm.me\"), person(\"Jan\",\"Gorecki\", role=\"aut\", email=\"j.gorecki@wit.edu.pl\"), person(\"Michael\",\"Chirico\", role=\"aut\", email=\"michaelchirico4@gmail.com\", comment = c(ORCID=\"0000-0003-0787-087X\")), person(\"Toby\",\"Hocking\", role=\"aut\", email=\"toby.hocking@r-project.org\", comment = c(ORCID=\"0000-0002-3146-0865\")), person(\"Benjamin\",\"Schwendinger\",role=\"aut\", comment = c(ORCID=\"0000-0003-3315-8114\")), person(\"Ivan\", \"Krylov\", role=\"aut\", email=\"ikrylov@disroot.org\", comment = c(ORCID=\"0000-0002-0172-3812\")), person(\"Pasha\",\"Stetsenko\", role=\"ctb\"), person(\"Tom\",\"Short\", role=\"ctb\"), person(\"Steve\",\"Lianoglou\", role=\"ctb\"), person(\"Eduard\",\"Antonyan\", role=\"ctb\"), person(\"Markus\",\"Bonsch\", role=\"ctb\"), person(\"Hugh\",\"Parsonage\", role=\"ctb\"), person(\"Scott\",\"Ritchie\", role=\"ctb\"), person(\"Kun\",\"Ren\", role=\"ctb\"), person(\"Xianying\",\"Tan\", role=\"ctb\"), person(\"Rick\",\"Saporta\", role=\"ctb\"), person(\"Otto\",\"Seiskari\", role=\"ctb\"), person(\"Xianghui\",\"Dong\", role=\"ctb\"), person(\"Michel\",\"Lang\", role=\"ctb\"), person(\"Watal\",\"Iwasaki\", role=\"ctb\"), person(\"Seth\",\"Wenchel\", role=\"ctb\"), person(\"Karl\",\"Broman\", role=\"ctb\"), person(\"Tobias\",\"Schmidt\", role=\"ctb\"), 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role=\"ctb\"), person(\"Reino\", \"Bruner\", role=\"ctb\"), person(given=\"@badasahog\", role=\"ctb\", comment=\"GitHub user\"), person(\"Vinit\", \"Thakur\", role=\"ctb\"), person(\"Mukul\", \"Kumar\", role=\"ctb\"), person(\"Ildikó\", \"Czeller\", role=\"ctb\"), person(\"Manmita\", \"Das\", role=\"ctb\"), person(\"Tarun\", \"Thammisetty\", role=\"ctb\") )", + "NeedsCompilation": "yes", + "Author": "Tyson Barrett [aut, cre] (ORCID: ), Matt Dowle [aut], Arun Srinivasan [aut], Jan Gorecki [aut], Michael Chirico [aut] (ORCID: ), Toby Hocking [aut] (ORCID: ), Benjamin Schwendinger [aut] (ORCID: ), Ivan Krylov [aut] (ORCID: ), Pasha Stetsenko [ctb], Tom Short [ctb], Steve Lianoglou [ctb], Eduard Antonyan [ctb], Markus Bonsch [ctb], Hugh Parsonage [ctb], Scott Ritchie [ctb], Kun Ren [ctb], Xianying Tan [ctb], Rick Saporta [ctb], Otto Seiskari [ctb], Xianghui Dong [ctb], Michel Lang [ctb], Watal Iwasaki [ctb], Seth Wenchel [ctb], Karl Broman [ctb], Tobias Schmidt [ctb], David Arenburg [ctb], Ethan Smith [ctb], Francois Cocquemas [ctb], Matthieu Gomez [ctb], Philippe Chataignon [ctb], Nello Blaser [ctb], Dmitry Selivanov [ctb], Andrey Riabushenko [ctb], Cheng Lee [ctb], Declan Groves [ctb], Daniel Possenriede [ctb], Felipe Parages [ctb], Denes Toth [ctb], Mus Yaramaz-David [ctb], Ayappan Perumal [ctb], James Sams [ctb], Martin Morgan [ctb], Michael Quinn [ctb], @javrucebo [ctb] (GitHub user), Marc Halperin [ctb], Roy Storey [ctb], Manish Saraswat [ctb], Morgan Jacob [ctb], Michael Schubmehl [ctb], Davis Vaughan [ctb], Leonardo Silvestri [ctb], Jim Hester [ctb], Anthony Damico [ctb], Sebastian Freundt [ctb], David Simons [ctb], Elliott Sales de Andrade [ctb], Cole Miller [ctb], Jens Peder Meldgaard [ctb], Vaclav Tlapak [ctb], Kevin Ushey [ctb], Dirk Eddelbuettel [ctb], Tony Fischetti [ctb], Ofek Shilon [ctb], Vadim Khotilovich [ctb], Hadley Wickham [ctb], Bennet Becker [ctb], Kyle Haynes [ctb], Boniface Christian Kamgang [ctb], Olivier Delmarcell [ctb], Josh O'Brien [ctb], Dereck de Mezquita [ctb], Michael Czekanski [ctb], Dmitry Shemetov [ctb], Nitish Jha [ctb], Joshua Wu [ctb], Iago Giné-Vázquez [ctb], Anirban Chetia [ctb], Doris Amoakohene [ctb], Angel Feliz [ctb], Michael Young [ctb], Mark Seeto [ctb], Philippe Grosjean [ctb], Vincent Runge [ctb], Christian Wia [ctb], Elise Maigné [ctb], Vincent Rocher [ctb], Vijay Lulla [ctb], Aljaž Sluga [ctb], Bill Evans [ctb], Reino Bruner [ctb], @badasahog [ctb] (GitHub user), Vinit Thakur [ctb], Mukul Kumar [ctb], Ildikó Czeller [ctb], Manmita Das [ctb], Tarun Thammisetty [ctb]", + "Maintainer": "Tyson Barrett ", + "Repository": "CRAN" + }, + "digest": { + "Package": "digest", + "Version": "0.6.39", + "Source": "Repository", + "Authors@R": "c(person(\"Dirk\", \"Eddelbuettel\", role = c(\"aut\", \"cre\"), email = \"edd@debian.org\", comment = c(ORCID = \"0000-0001-6419-907X\")), person(\"Antoine\", \"Lucas\", role=\"ctb\", comment = c(ORCID = \"0000-0002-8059-9767\")), person(\"Jarek\", \"Tuszynski\", role=\"ctb\"), person(\"Henrik\", \"Bengtsson\", role=\"ctb\", comment = c(ORCID = \"0000-0002-7579-5165\")), person(\"Simon\", \"Urbanek\", role=\"ctb\", comment = c(ORCID = \"0000-0003-2297-1732\")), person(\"Mario\", \"Frasca\", role=\"ctb\"), person(\"Bryan\", \"Lewis\", role=\"ctb\"), person(\"Murray\", \"Stokely\", role=\"ctb\"), person(\"Hannes\", \"Muehleisen\", role=\"ctb\", comment = c(ORCID = \"0000-0001-8552-0029\")), person(\"Duncan\", \"Murdoch\", role=\"ctb\"), person(\"Jim\", \"Hester\", role=\"ctb\", comment = c(ORCID = \"0000-0002-2739-7082\")), person(\"Wush\", \"Wu\", role=\"ctb\", comment = c(ORCID = \"0000-0001-5180-0567\")), person(\"Qiang\", \"Kou\", role=\"ctb\", comment = c(ORCID = \"0000-0001-6786-5453\")), person(\"Thierry\", \"Onkelinx\", role=\"ctb\", comment = c(ORCID = \"0000-0001-8804-4216\")), person(\"Michel\", \"Lang\", role=\"ctb\", comment = c(ORCID = \"0000-0001-9754-0393\")), person(\"Viliam\", \"Simko\", role=\"ctb\"), person(\"Kurt\", \"Hornik\", role=\"ctb\", comment = c(ORCID = \"0000-0003-4198-9911\")), person(\"Radford\", \"Neal\", role=\"ctb\", comment = c(ORCID = \"0000-0002-2473-3407\")), person(\"Kendon\", \"Bell\", role=\"ctb\", comment = c(ORCID = \"0000-0002-9093-8312\")), person(\"Matthew\", \"de Queljoe\", role=\"ctb\"), person(\"Dmitry\", \"Selivanov\", role=\"ctb\", comment = c(ORCID = \"0000-0003-0492-6647\")), person(\"Ion\", \"Suruceanu\", role=\"ctb\", comment = c(ORCID = \"0009-0005-6446-4909\")), person(\"Bill\", \"Denney\", role=\"ctb\", comment = c(ORCID = \"0000-0002-5759-428X\")), person(\"Dirk\", \"Schumacher\", role=\"ctb\"), person(\"András\", \"Svraka\", role=\"ctb\", comment = c(ORCID = \"0009-0008-8480-1329\")), person(\"Sergey\", \"Fedorov\", role=\"ctb\", comment = c(ORCID = \"0000-0002-5970-7233\")), person(\"Will\", \"Landau\", role=\"ctb\", comment = c(ORCID = \"0000-0003-1878-3253\")), person(\"Floris\", \"Vanderhaeghe\", role=\"ctb\", comment = c(ORCID = \"0000-0002-6378-6229\")), person(\"Kevin\", \"Tappe\", role=\"ctb\"), person(\"Harris\", \"McGehee\", role=\"ctb\"), person(\"Tim\", \"Mastny\", role=\"ctb\"), person(\"Aaron\", \"Peikert\", role=\"ctb\", comment = c(ORCID = \"0000-0001-7813-818X\")), person(\"Mark\", \"van der Loo\", role=\"ctb\", comment = c(ORCID = \"0000-0002-9807-4686\")), person(\"Chris\", \"Muir\", role=\"ctb\", comment = c(ORCID = \"0000-0003-2555-3878\")), person(\"Moritz\", \"Beller\", role=\"ctb\", comment = c(ORCID = \"0000-0003-4852-0526\")), person(\"Sebastian\", \"Campbell\", role=\"ctb\", comment = c(ORCID = \"0009-0000-5948-4503\")), person(\"Winston\", \"Chang\", role=\"ctb\", comment = c(ORCID = \"0000-0002-1576-2126\")), person(\"Dean\", \"Attali\", role=\"ctb\", comment = c(ORCID = \"0000-0002-5645-3493\")), person(\"Michael\", \"Chirico\", role=\"ctb\", comment = c(ORCID = \"0000-0003-0787-087X\")), person(\"Kevin\", \"Ushey\", role=\"ctb\", comment = c(ORCID = \"0000-0003-2880-7407\")), person(\"Carl\", \"Pearson\", role=\"ctb\", comment = c(ORCID = \"0000-0003-0701-7860\")))", + "Date": "2025-11-19", + "Title": "Create Compact Hash Digests of R Objects", + "Description": "Implementation of a function 'digest()' for the creation of hash digests of arbitrary R objects (using the 'md5', 'sha-1', 'sha-256', 'crc32', 'xxhash', 'murmurhash', 'spookyhash', 'blake3', 'crc32c', 'xxh3_64', and 'xxh3_128' algorithms) permitting easy comparison of R language objects, as well as functions such as 'hmac()' to create hash-based message authentication code. Please note that this package is not meant to be deployed for cryptographic purposes for which more comprehensive (and widely tested) libraries such as 'OpenSSL' should be used.", + "URL": "https://github.com/eddelbuettel/digest, https://eddelbuettel.github.io/digest/, https://dirk.eddelbuettel.com/code/digest.html", + "BugReports": "https://github.com/eddelbuettel/digest/issues", + "Depends": [ + "R (>= 3.3.0)" + ], + "Imports": [ + "utils" + ], + "License": "GPL (>= 2)", + "Suggests": [ + "tinytest", + "simplermarkdown", + "rbenchmark" + ], + "VignetteBuilder": "simplermarkdown", + "Encoding": "UTF-8", + "NeedsCompilation": "yes", + "Author": "Dirk Eddelbuettel [aut, cre] (ORCID: ), Antoine Lucas [ctb] (ORCID: ), Jarek Tuszynski [ctb], Henrik Bengtsson [ctb] (ORCID: ), Simon Urbanek [ctb] (ORCID: ), Mario Frasca [ctb], Bryan Lewis [ctb], Murray Stokely [ctb], Hannes Muehleisen [ctb] (ORCID: ), Duncan Murdoch [ctb], Jim Hester [ctb] (ORCID: ), Wush Wu [ctb] (ORCID: ), Qiang Kou [ctb] 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and http-parser library, see src/http-parser/AUTHORS file\"), person(\"Niels\", \"Provos\", role = \"cph\", comment = \"libuv subcomponent: tree.h\"), person(\"Internet Systems Consortium, Inc.\", role = \"cph\", comment = \"libuv subcomponent: inet_pton and inet_ntop, contained in src/libuv/src/inet.c\"), person(\"Alexander\", \"Chemeris\", role = \"cph\", comment = \"libuv subcomponent: stdint-msvc2008.h (from msinttypes)\"), person(\"Google, Inc.\", role = \"cph\", comment = \"libuv subcomponent: pthread-fixes.c\"), person(\"Sony Mobile Communcations AB\", role = \"cph\", comment = \"libuv subcomponent: pthread-fixes.c\"), person(\"Berkeley Software Design Inc.\", role = \"cph\", comment = \"libuv subcomponent: android-ifaddrs.h, android-ifaddrs.c\"), person(\"Kenneth\", \"MacKay\", role = \"cph\", comment = \"libuv subcomponent: android-ifaddrs.h, android-ifaddrs.c\"), person(\"Emergya (Cloud4all, FP7/2007-2013, grant agreement no 289016)\", role = \"cph\", comment = \"libuv subcomponent: android-ifaddrs.h, android-ifaddrs.c\"), person(\"Steve\", \"Reid\", role = \"aut\", comment = \"SHA-1 implementation\"), person(\"James\", \"Brown\", role = \"aut\", comment = \"SHA-1 implementation\"), person(\"Bob\", \"Trower\", role = \"aut\", comment = \"base64 implementation\"), person(\"Alexander\", \"Peslyak\", role = \"aut\", comment = \"MD5 implementation\"), person(\"Trantor Standard Systems\", role = \"cph\", comment = \"base64 implementation\"), person(\"Igor\", \"Sysoev\", role = \"cph\", comment = \"http-parser\") )", + "Description": "Provides low-level socket and protocol support for handling HTTP and WebSocket requests directly from within R. It is primarily intended as a building block for other packages, rather than making it particularly easy to create complete web applications using httpuv alone. httpuv is built on top of the libuv and http-parser C libraries, both of which were developed by Joyent, Inc. (See LICENSE file for libuv and http-parser license information.)", + "License": "GPL (>= 2) | file LICENSE", + "URL": "https://rstudio.github.io/httpuv/, https://github.com/rstudio/httpuv", + "BugReports": "https://github.com/rstudio/httpuv/issues", + "Depends": [ + "R (>= 2.15.1)" + ], + "Imports": [ + "later (>= 0.8.0)", + "promises", + "R6", + "Rcpp (>= 1.0.7)", + "utils" + ], + "Suggests": [ + "callr", + "curl", + "jsonlite", + "testthat (>= 3.0.0)", + "websocket" + ], + "LinkingTo": [ + "later", + "Rcpp" + ], + "Config/Needs/website": "tidyverse/tidytemplate", + "Config/testthat/edition": "3", + "Config/usethis/last-upkeep": "2025-07-01", + "Encoding": "UTF-8", + "RoxygenNote": "7.3.3", + "SystemRequirements": "GNU make, zlib", + "Collate": "'RcppExports.R' 'httpuv-package.R' 'httpuv.R' 'random_port.R' 'server.R' 'staticServer.R' 'static_paths.R' 'utils.R'", + "NeedsCompilation": "yes", + "Author": "Joe Cheng [aut], Winston Chang [aut, cre], Posit, PBC [cph, fnd] (ROR: ), Hector Corrada Bravo [ctb], Jeroen Ooms [ctb], Andrzej Krzemienski [cph] (optional.hpp), libuv project contributors [cph] (libuv library, see src/libuv/AUTHORS file), Joyent, Inc. and other Node contributors [cph] (libuv library, see src/libuv/AUTHORS file; and http-parser library, see src/http-parser/AUTHORS file), Niels Provos [cph] (libuv subcomponent: tree.h), Internet Systems Consortium, Inc. [cph] (libuv subcomponent: inet_pton and inet_ntop, contained in src/libuv/src/inet.c), Alexander Chemeris [cph] (libuv subcomponent: stdint-msvc2008.h (from msinttypes)), Google, Inc. [cph] (libuv subcomponent: pthread-fixes.c), Sony Mobile Communcations AB [cph] (libuv subcomponent: pthread-fixes.c), Berkeley Software Design Inc. [cph] (libuv subcomponent: android-ifaddrs.h, android-ifaddrs.c), Kenneth MacKay [cph] (libuv subcomponent: android-ifaddrs.h, android-ifaddrs.c), Emergya (Cloud4all, FP7/2007-2013, grant agreement no 289016) [cph] (libuv subcomponent: android-ifaddrs.h, android-ifaddrs.c), Steve Reid [aut] (SHA-1 implementation), James Brown [aut] (SHA-1 implementation), Bob Trower [aut] (base64 implementation), Alexander Peslyak [aut] (MD5 implementation), Trantor Standard Systems [cph] (base64 implementation), Igor Sysoev [cph] (http-parser)", + "Maintainer": "Winston Chang ", + "Repository": "CRAN" + }, + "httr2": { + "Package": "httr2", + "Version": "1.3.0", + "Source": "Repository", + "Title": "Perform HTTP Requests and Process the Responses", + "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"aut\", \"cre\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")), person(\"Maximilian\", \"Girlich\", role = \"ctb\") )", + "Description": "Tools for creating and modifying HTTP requests, then performing them and processing the results. 'httr2' is a modern re-imagining of 'httr' that uses a pipe-based interface and solves more of the problems that API wrapping packages face.", + "License": "MIT + file LICENSE", + "URL": "https://httr2.r-lib.org, https://github.com/r-lib/httr2", + "BugReports": "https://github.com/r-lib/httr2/issues", + "Depends": [ + "R (>= 4.1)" + ], + "Imports": [ + "cli (>= 3.0.0)", + "curl (>= 6.4.0)", + "glue", + "lifecycle", + "magrittr", + "openssl", + "R6", + "rlang (>= 1.3.0)", + "vctrs (>= 0.6.3)", + "withr" + ], + "Suggests": [ + "askpass", + "bench", + "clipr", + "covr", + "digest", + "docopt", + "httpuv", + "jose", + "jsonlite", + "knitr", + "later (>= 1.4.0)", + "nanonext", + "otel (>= 0.2.0)", + "otelsdk (>= 0.2.0)", + "paws.common (>= 0.8.0)", + "promises", + "rappdirs", + "rmarkdown", + "testthat (>= 3.1.8)", + "tibble", + "webfakes (>= 1.4.0)", + "xml2" + ], + "VignetteBuilder": "knitr", + "Config/Needs/website": "tidyverse/tidytemplate", + "Config/roxygen2/version": "8.0.0", + "Config/testthat/edition": "3", + "Config/testthat/parallel": "true", + "Config/testthat/start-first": "resp-stream, req-perform", + "Encoding": "UTF-8", + "NeedsCompilation": "no", + "Author": "Hadley Wickham [aut, cre], Posit Software, PBC [cph, fnd], Maximilian Girlich [ctb]", + "Maintainer": "Hadley Wickham ", + "Repository": "CRAN" + }, + "isoband": { + "Package": "isoband", + "Version": "0.3.0", + "Source": "Repository", + "Title": "Generate Isolines and Isobands from Regularly Spaced Elevation Grids", + "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\", comment = c(ORCID = \"0000-0003-4757-117X\")), person(\"Claus O.\", \"Wilke\", , \"wilke@austin.utexas.edu\", role = \"aut\", comment = c(\"Original author\", ORCID = \"0000-0002-7470-9261\")), person(\"Thomas Lin\", \"Pedersen\", , \"thomas.pedersen@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-5147-4711\")), person(\"Posit, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )", + "Description": "A fast C++ implementation to generate contour lines (isolines) and contour polygons (isobands) from regularly spaced grids containing elevation data.", + "License": "MIT + file LICENSE", + "URL": "https://isoband.r-lib.org, https://github.com/r-lib/isoband", + "BugReports": "https://github.com/r-lib/isoband/issues", + "Imports": [ + "cli", + "grid", + "rlang", + "utils" + ], + "Suggests": [ + "covr", + "ggplot2", + "knitr", + "magick", + "bench", + "rmarkdown", + "sf", + "testthat (>= 3.0.0)", + "xml2" + ], + "VignetteBuilder": "knitr", + "Config/Needs/website": "tidyverse/tidytemplate", + "Config/testthat/edition": "3", + "Config/usethis/last-upkeep": "2025-12-05", + "Encoding": "UTF-8", + "RoxygenNote": "7.3.3", + "Config/build/compilation-database": "true", + "LinkingTo": [ + "cpp11" + ], + "NeedsCompilation": "yes", + "Author": "Hadley Wickham [aut] (ORCID: ), Claus O. Wilke [aut] (Original author, ORCID: ), Thomas Lin Pedersen [aut, cre] (ORCID: ), Posit, PBC [cph, fnd] (ROR: )", + "Maintainer": "Thomas Lin Pedersen ", + "Repository": "CRAN" + }, + "jpeg": { + "Package": "jpeg", + "Version": "0.1-11", + "Source": "Repository", + "Title": "Read and write JPEG images", + "Author": "Simon Urbanek [aut, cre, cph] (https://urbanek.org, )", + "Authors@R": "person(\"Simon\", \"Urbanek\", role=c(\"aut\",\"cre\",\"cph\"), email=\"Simon.Urbanek@r-project.org\", comment=c(\"https://urbanek.org\", ORCID=\"0000-0003-2297-1732\"))", + "Maintainer": "Simon Urbanek ", + "Depends": [ + "R (>= 2.9.0)" + ], + "Description": "This package provides an easy and simple way to read, write and display bitmap images stored in the JPEG format. It can read and write both files and in-memory raw vectors.", + "License": "GPL-2 | GPL-3", + "SystemRequirements": "libjpeg", + "URL": "https://www.rforge.net/jpeg/", + "BugReports": "https://github.com/s-u/jpeg/issues", + "NeedsCompilation": "yes", + "Repository": "CRAN" + }, + "jquerylib": { + "Package": "jquerylib", + "Version": "0.1.4", + "Source": "Repository", + "Title": "Obtain 'jQuery' as an HTML Dependency Object", + "Authors@R": "c( person(\"Carson\", \"Sievert\", role = c(\"aut\", \"cre\"), email = \"carson@rstudio.com\", comment = c(ORCID = \"0000-0002-4958-2844\")), person(\"Joe\", \"Cheng\", role = \"aut\", email = \"joe@rstudio.com\"), person(family = \"RStudio\", role = \"cph\"), person(family = \"jQuery Foundation\", role = \"cph\", comment = \"jQuery library and jQuery UI library\"), person(family = \"jQuery contributors\", role = c(\"ctb\", \"cph\"), comment = \"jQuery library; authors listed in inst/lib/jquery-AUTHORS.txt\") )", + "Description": "Obtain any major version of 'jQuery' () and use it in any webpage generated by 'htmltools' (e.g. 'shiny', 'htmlwidgets', and 'rmarkdown'). Most R users don't need to use this package directly, but other R packages (e.g. 'shiny', 'rmarkdown', etc.) depend on this package to avoid bundling redundant copies of 'jQuery'.", + "License": "MIT + file LICENSE", + "Encoding": "UTF-8", + "Config/testthat/edition": "3", + "RoxygenNote": "7.0.2", + "Imports": [ + "htmltools" + ], + "Suggests": [ + "testthat" + ], + "NeedsCompilation": "no", + "Author": "Carson Sievert [aut, cre] (), Joe Cheng [aut], RStudio [cph], jQuery Foundation [cph] (jQuery library and jQuery UI library), jQuery contributors [ctb, cph] (jQuery library; authors listed in inst/lib/jquery-AUTHORS.txt)", + "Maintainer": "Carson Sievert ", + "Repository": "CRAN" + }, + "jsonlite": { + "Package": "jsonlite", + "Version": "2.0.0", + "Source": "Repository", + "Title": "A Simple and Robust JSON Parser and Generator for R", + "License": "MIT + file LICENSE", + "Depends": [ + "methods" + ], + "Authors@R": "c( person(\"Jeroen\", \"Ooms\", role = c(\"aut\", \"cre\"), email = \"jeroenooms@gmail.com\", comment = c(ORCID = \"0000-0002-4035-0289\")), person(\"Duncan\", \"Temple Lang\", role = \"ctb\"), person(\"Lloyd\", \"Hilaiel\", role = \"cph\", comment=\"author of bundled libyajl\"))", + "URL": "https://jeroen.r-universe.dev/jsonlite https://arxiv.org/abs/1403.2805", + "BugReports": "https://github.com/jeroen/jsonlite/issues", + "Maintainer": "Jeroen Ooms ", + "VignetteBuilder": "knitr, R.rsp", + "Description": "A reasonably fast JSON parser and generator, optimized for statistical data and the web. Offers simple, flexible tools for working with JSON in R, and is particularly powerful for building pipelines and interacting with a web API. The implementation is based on the mapping described in the vignette (Ooms, 2014). In addition to converting JSON data from/to R objects, 'jsonlite' contains functions to stream, validate, and prettify JSON data. The unit tests included with the package verify that all edge cases are encoded and decoded consistently for use with dynamic data in systems and applications.", + "Suggests": [ + "httr", + "vctrs", + "testthat", + "knitr", + "rmarkdown", + "R.rsp", + "sf" + ], + "RoxygenNote": "7.3.2", + "Encoding": "UTF-8", + "NeedsCompilation": "yes", + "Author": "Jeroen Ooms [aut, cre] (), Duncan Temple Lang [ctb], Lloyd Hilaiel [cph] (author of bundled libyajl)", + "Repository": "CRAN" + }, + "knitr": { + "Package": "knitr", + "Version": "1.51", + "Source": "Repository", + "Type": "Package", + "Title": "A General-Purpose Package for Dynamic Report Generation in R", + "Authors@R": "c( person(\"Yihui\", \"Xie\", role = c(\"aut\", \"cre\"), email = \"xie@yihui.name\", comment = c(ORCID = \"0000-0003-0645-5666\", URL = \"https://yihui.org\")), person(\"Abhraneel\", \"Sarma\", role = \"ctb\"), person(\"Adam\", \"Vogt\", role = \"ctb\"), person(\"Alastair\", \"Andrew\", role = \"ctb\"), person(\"Alex\", 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\"Slowikowski\", role = \"ctb\"), person(\"Karl\", \"Forner\", role = \"ctb\"), person(c(\"Kevin\", \"K.\"), \"Smith\", role = \"ctb\"), person(\"Kirill\", \"Mueller\", role = \"ctb\"), person(\"Kohske\", \"Takahashi\", role = \"ctb\"), person(\"Lorenz\", \"Walthert\", role = \"ctb\"), person(\"Lucas\", \"Gallindo\", role = \"ctb\"), person(\"Marius\", \"Hofert\", role = \"ctb\"), person(\"Martin\", \"Modrák\", role = \"ctb\"), person(\"Michael\", \"Chirico\", role = \"ctb\"), person(\"Michael\", \"Friendly\", role = \"ctb\"), person(\"Michal\", \"Bojanowski\", role = \"ctb\"), person(\"Michel\", \"Kuhlmann\", role = \"ctb\"), person(\"Miller\", \"Patrick\", role = \"ctb\"), person(\"Nacho\", \"Caballero\", role = \"ctb\"), person(\"Nick\", \"Salkowski\", role = \"ctb\"), person(\"Niels Richard\", \"Hansen\", role = \"ctb\"), person(\"Noam\", \"Ross\", role = \"ctb\"), person(\"Obada\", \"Mahdi\", role = \"ctb\"), person(\"Pavel N.\", \"Krivitsky\", role = \"ctb\", comment=c(ORCID = 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role = \"ctb\"), person(\"Tom\", \"Torsney-Weir\", role = \"ctb\"), person(\"Trevor\", \"Davis\", role = \"ctb\"), person(\"Viktoras\", \"Veitas\", role = \"ctb\"), person(\"Weicheng\", \"Zhu\", role = \"ctb\"), person(\"Wush\", \"Wu\", role = \"ctb\"), person(\"Zachary\", \"Foster\", role = \"ctb\"), person(\"Zhian N.\", \"Kamvar\", role = \"ctb\", comment = c(ORCID = \"0000-0003-1458-7108\")), person(given = \"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", + "Description": "Provides a general-purpose tool for dynamic report generation in R using Literate Programming techniques.", + "Depends": [ + "R (>= 3.6.0)" + ], + "Imports": [ + "evaluate (>= 0.15)", + "highr (>= 0.11)", + "methods", + "tools", + "xfun (>= 0.52)", + "yaml (>= 2.1.19)" + ], + "Suggests": [ + "bslib", + "DBI (>= 0.4-1)", + "digest", + "formatR", + "gifski", + "gridSVG", + "htmlwidgets (>= 0.7)", + "jpeg", + "JuliaCall (>= 0.11.1)", + "magick", + "litedown", + "markdown (>= 1.3)", + "otel", + "otelsdk", + 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The function rst2pdf() requires rst2pdf (https://github.com/rst2pdf/rst2pdf).", + "Collate": "'block.R' 'cache.R' 'citation.R' 'hooks-html.R' 'plot.R' 'utils.R' 'defaults.R' 'concordance.R' 'engine.R' 'highlight.R' 'themes.R' 'header.R' 'hooks-asciidoc.R' 'hooks-chunk.R' 'hooks-extra.R' 'hooks-latex.R' 'hooks-md.R' 'hooks-rst.R' 'hooks-textile.R' 'hooks.R' 'otel.R' 'output.R' 'package.R' 'pandoc.R' 'params.R' 'parser.R' 'pattern.R' 'rocco.R' 'spin.R' 'table.R' 'template.R' 'utils-conversion.R' 'utils-rd2html.R' 'utils-string.R' 'utils-sweave.R' 'utils-upload.R' 'utils-vignettes.R' 'zzz.R'", + "RoxygenNote": "7.3.3", + "NeedsCompilation": "no", + "Author": "Yihui Xie [aut, cre] (ORCID: , URL: https://yihui.org), Abhraneel Sarma [ctb], Adam Vogt [ctb], Alastair Andrew [ctb], Alex Zvoleff [ctb], Amar Al-Zubaidi [ctb], Andre Simon [ctb] (the CSS files under inst/themes/ were derived from the Highlight package http://www.andre-simon.de), Aron Atkins [ctb], Aaron Wolen [ctb], Ashley Manton [ctb], Atsushi Yasumoto [ctb] (ORCID: ), Ben Baumer [ctb], Brian Diggs [ctb], Brian Zhang [ctb], Bulat Yapparov [ctb], Cassio Pereira [ctb], Christophe Dervieux [ctb], David Hall [ctb], David Hugh-Jones [ctb], David Robinson [ctb], Doug Hemken [ctb], Duncan Murdoch [ctb], Elio Campitelli [ctb], Ellis Hughes [ctb], Emily Riederer [ctb], Fabian Hirschmann [ctb], Fitch Simeon [ctb], Forest Fang [ctb], Frank E Harrell Jr [ctb] (the Sweavel package at inst/misc/Sweavel.sty), Garrick Aden-Buie [ctb], Gregoire Detrez [ctb], Hadley Wickham [ctb], Hao Zhu [ctb], Heewon Jeon [ctb], Henrik Bengtsson [ctb], Hiroaki Yutani [ctb], Ian Lyttle [ctb], Hodges Daniel [ctb], Jacob Bien [ctb], Jake Burkhead [ctb], James Manton [ctb], Jared Lander [ctb], Jason Punyon [ctb], Javier Luraschi [ctb], Jeff Arnold [ctb], Jenny Bryan [ctb], Jeremy Ashkenas [ctb, cph] (the CSS file at inst/misc/docco-classic.css), Jeremy Stephens [ctb], Jim Hester [ctb], Joe Cheng [ctb], Johannes Ranke [ctb], John Honaker [ctb], John Muschelli [ctb], Jonathan Keane [ctb], JJ Allaire [ctb], Johan Toloe [ctb], Jonathan Sidi [ctb], Joseph Larmarange [ctb], Julien Barnier [ctb], Kaiyin Zhong [ctb], Kamil Slowikowski [ctb], Karl Forner [ctb], Kevin K. Smith [ctb], Kirill Mueller [ctb], Kohske Takahashi [ctb], Lorenz Walthert [ctb], Lucas Gallindo [ctb], Marius Hofert [ctb], Martin Modrák [ctb], Michael Chirico [ctb], Michael Friendly [ctb], Michal Bojanowski [ctb], Michel Kuhlmann [ctb], Miller Patrick [ctb], Nacho Caballero [ctb], Nick Salkowski [ctb], Niels Richard Hansen [ctb], Noam Ross [ctb], Obada Mahdi [ctb], Pavel N. Krivitsky [ctb] (ORCID: ), Pedro Faria [ctb], Qiang Li [ctb], Ramnath Vaidyanathan [ctb], Richard Cotton [ctb], Robert Krzyzanowski [ctb], Rodrigo Copetti [ctb], Romain Francois [ctb], Ruaridh Williamson [ctb], Sagiru Mati [ctb] (ORCID: ), Scott Kostyshak [ctb], Sebastian Meyer [ctb], Sietse Brouwer [ctb], Simon de Bernard [ctb], Sylvain Rousseau [ctb], Taiyun Wei [ctb], Thibaut Assus [ctb], Thibaut Lamadon [ctb], Thomas Leeper [ctb], Tim Mastny [ctb], Tom Torsney-Weir [ctb], Trevor Davis [ctb], Viktoras Veitas [ctb], Weicheng Zhu [ctb], Wush Wu [ctb], Zachary Foster [ctb], Zhian N. Kamvar [ctb] (ORCID: ), Posit Software, PBC [cph, fnd]", + "Maintainer": "Yihui Xie ", + "Repository": "CRAN" + }, + "labeling": { + "Package": "labeling", + "Version": "0.4.3", + "Source": "Repository", + "Type": "Package", + "Title": "Axis Labeling", + "Date": "2023-08-29", + "Author": "Justin Talbot,", + "Maintainer": "Nuno Sempere ", + "Description": "Functions which provide a range of axis labeling algorithms.", + "License": "MIT + file LICENSE | Unlimited", + "Collate": "'labeling.R'", + "NeedsCompilation": "no", + "Imports": [ + "stats", + "graphics" + ], + "Repository": "CRAN" + }, + "later": { + "Package": "later", + "Version": "1.4.8", + "Source": "Repository", + "Type": "Package", + "Title": "Utilities for Scheduling Functions to Execute Later with Event Loops", + "Authors@R": "c( person(\"Winston\", \"Chang\", , \"winston@posit.co\", role = \"aut\", comment = c(ORCID = \"0000-0002-1576-2126\")), person(\"Joe\", \"Cheng\", , \"joe@posit.co\", role = \"aut\"), person(\"Charlie\", \"Gao\", , \"charlie.gao@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-0750-061X\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")), person(\"Marcus\", \"Geelnard\", role = c(\"ctb\", \"cph\"), comment = \"TinyCThread library, https://tinycthread.github.io/\"), person(\"Evan\", \"Nemerson\", role = c(\"ctb\", \"cph\"), comment = \"TinyCThread library, https://tinycthread.github.io/\") )", + "Description": "Executes arbitrary R or C functions some time after the current time, after the R execution stack has emptied. 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[cph]", + "Maintainer": "Dyfan Jones ", + "Repository": "CRAN" + }, + "paws.end.user.computing": { + "Package": "paws.end.user.computing", + "Version": "0.11.0", + "Source": "Repository", + "Title": "'Amazon Web Services' End User Computing Services", + "Authors@R": "c( person(\"David\", \"Kretch\", , \"david.kretch@gmail.com\", role = \"aut\"), person(\"Adam\", \"Banker\", , \"adam.banker39@gmail.com\", role = \"aut\"), person(\"Dyfan\", \"Jones\", , \"dyfan.r.jones@gmail.com\", role = \"cre\"), person(\"Amazon.com, Inc.\", role = \"cph\") )", + "Description": "Interface to 'Amazon Web Services' end user computing services, including collaborative document editing, mobile intranet, and more .", + "License": "Apache License (>= 2.0)", + "URL": "https://github.com/paws-r/paws, https://paws-r.r-universe.dev/paws.end.user.computing, https://www.paws-r-sdk.com", + "BugReports": "https://github.com/paws-r/paws/issues", + "Depends": [ + "R (>= 3.5.0)" + ], + "Imports": [ + "paws.common (>= 0.9.0)" + ], + "Suggests": [ + "testthat" + ], + "Encoding": "UTF-8", + "Config/roxygen2/version": "8.1.0", + "Collate": "'appstream_service.R' 'appstream_interfaces.R' 'appstream_operations.R' 'chatbot_service.R' 'chatbot_interfaces.R' 'chatbot_operations.R' 'ivschat_service.R' 'ivschat_interfaces.R' 'ivschat_operations.R' 'reexports_paws.common.R' 'workdocs_service.R' 'workdocs_interfaces.R' 'workdocs_operations.R' 'workmail_service.R' 'workmail_interfaces.R' 'workmail_operations.R' 'workmailmessageflow_service.R' 'workmailmessageflow_interfaces.R' 'workmailmessageflow_operations.R' 'workspaces_service.R' 'workspaces_interfaces.R' 'workspaces_operations.R' 'workspacesweb_service.R' 'workspacesweb_interfaces.R' 'workspacesweb_operations.R'", + "NeedsCompilation": "no", + "Author": "David Kretch [aut], Adam Banker [aut], Dyfan Jones [cre], Amazon.com, Inc. 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Documentation about 'units' is provided in the paper by Pebesma, Mailund & Hiebert (2016, ), included in this package as a vignette; see 'citation(\"units\")' for details.", + "SystemRequirements": "udunits-2", + "License": "GPL-2", + "URL": "https://r-quantities.github.io/units/, https://github.com/r-quantities/units", + "BugReports": "https://github.com/r-quantities/units/issues", + "RoxygenNote": "7.3.3", + "Encoding": "UTF-8", + "Config/testthat/edition": "3", + "NeedsCompilation": "yes", + "Author": "Edzer Pebesma [aut, cre] (ORCID: ), Thomas Mailund [aut], Tomasz Kalinowski [aut], James Hiebert [ctb], Iñaki Ucar [aut] (ORCID: ), Thomas Lin Pedersen [ctb]", + "Maintainer": "Edzer Pebesma ", + "Repository": "CRAN" + }, + "utf8": { + "Package": "utf8", + "Version": "1.2.6", + "Source": "Repository", + "Title": "Unicode Text Processing", + "Authors@R": "c(person(given = c(\"Patrick\", \"O.\"), family = \"Perry\", role = c(\"aut\", \"cph\")), person(given = \"Kirill\", family = \"M\\u00fcller\", role = \"cre\", email = \"kirill@cynkra.com\", comment = c(ORCID = \"0000-0002-1416-3412\")), person(given = \"Unicode, Inc.\", role = c(\"cph\", \"dtc\"), comment = \"Unicode Character Database\"))", + "Description": "Process and print 'UTF-8' encoded international text (Unicode). 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The color maps are also perceptually-uniform, both in regular form and also when converted to black-and-white for printing. This is the 'lite' version of the 'viridis' package that also contains 'ggplot2' bindings for discrete and continuous color and fill scales and can be found at .", + "License": "MIT + file LICENSE", + "Encoding": "UTF-8", + "Depends": [ + "R (>= 2.10)" + ], + "Suggests": [ + "hexbin (>= 1.27.0)", + "ggplot2 (>= 1.0.1)", + "testthat", + "covr" + ], + "URL": "https://sjmgarnier.github.io/viridisLite/, https://github.com/sjmgarnier/viridisLite/", + "BugReports": "https://github.com/sjmgarnier/viridisLite/issues/", + "RoxygenNote": "7.3.3", + "NeedsCompilation": "no", + "Author": "Simon Garnier [aut, cre], Noam Ross [ctb, cph], Bob Rudis [ctb, cph], Marco Sciaini [ctb, cph], Antônio Pedro Camargo [ctb, cph], Cédric Scherer [ctb, cph]", + "Repository": "CRAN" + }, + "vroom": { + "Package": "vroom", + "Version": "1.7.1", + "Source": "Repository", + "Title": "Read and Write Rectangular Text Data Quickly", + "Authors@R": "c( person(\"Jim\", \"Hester\", role = \"aut\", comment = c(ORCID = \"0000-0002-2739-7082\")), person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\", comment = c(ORCID = \"0000-0003-4757-117X\")), person(\"Jennifer\", \"Bryan\", , \"jenny@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-6983-2759\")), person(\"Shelby\", \"Bearrows\", role = \"ctb\"), person(\"https://github.com/mandreyel/\", role = \"cph\", comment = \"mio library\"), person(\"Jukka\", \"Jylänki\", role = \"cph\", comment = \"grisu3 implementation\"), person(\"Mikkel\", \"Jørgensen\", role = \"cph\", comment = \"grisu3 implementation\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )", + "Description": "The goal of 'vroom' is to read and write data (like 'csv', 'tsv' and 'fwf') quickly. When reading it uses a quick initial indexing step, then reads the values lazily , so only the data you actually use needs to be read. The writer formats the data in parallel and writes to disk asynchronously from formatting.", + "License": "MIT + file LICENSE", + "URL": "https://vroom.tidyverse.org, https://github.com/tidyverse/vroom", + "BugReports": "https://github.com/tidyverse/vroom/issues", + "Depends": [ + "R (>= 4.1)" + ], + "Imports": [ + "bit64", + "cli (>= 3.2.0)", + "crayon", + "glue", + "hms", + "lifecycle (>= 1.0.3)", + "methods", + "rlang (>= 1.1.0)", + "stats", + "tibble (>= 2.0.0)", + "tidyselect", + "tzdb (>= 0.1.1)", + "vctrs (>= 0.2.0)", + "withr" + ], + "Suggests": [ + "archive", + "bench (>= 1.1.0)", + "covr", + "curl", + "dplyr", + "forcats", + "fs", + "ggplot2", + "knitr", + "patchwork", + "prettyunits", + "purrr", + "rmarkdown", + "rstudioapi", + "scales", + "spelling", + "testthat (>= 2.1.0)", + "tidyr", + "utils", + "waldo", + "xml2" + ], + "LinkingTo": [ + "cpp11 (>= 0.2.0)", + "progress (>= 1.2.3)", + "tzdb (>= 0.1.1)" + ], + "VignetteBuilder": "knitr", + "Config/Needs/website": "nycflights13, tidyverse/tidytemplate", + "Config/testthat/edition": "3", + "Config/testthat/parallel": "false", + "Config/usethis/last-upkeep": "2025-11-25", + "Copyright": "file COPYRIGHTS", + "Encoding": "UTF-8", + "Language": "en-US", + "RoxygenNote": "7.3.3", + "Config/build/compilation-database": "true", + "NeedsCompilation": "yes", + "Author": "Jim Hester [aut] (ORCID: ), Hadley Wickham [aut] (ORCID: ), Jennifer Bryan [aut, cre] (ORCID: ), Shelby Bearrows [ctb], https://github.com/mandreyel/ [cph] (mio library), Jukka Jylänki [cph] (grisu3 implementation), Mikkel Jørgensen [cph] (grisu3 implementation), Posit Software, PBC [cph, fnd] (ROR: )", + "Maintainer": "Jennifer Bryan ", + "Repository": "CRAN" + }, + "withr": { + "Package": "withr", + "Version": "3.0.3", + "Source": "Repository", + "Title": "Run Code 'With' Temporarily Modified Global State", + "Authors@R": "c( person(\"Jim\", \"Hester\", role = \"aut\"), person(\"Lionel\", \"Henry\", , \"lionel@posit.co\", role = c(\"aut\", \"cre\")), person(\"Kirill\", \"Müller\", , \"krlmlr+r@mailbox.org\", role = \"aut\"), person(\"Kevin\", \"Ushey\", , \"kevinushey@gmail.com\", role = \"aut\"), person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\"), person(\"Winston\", \"Chang\", role = \"aut\"), person(\"Jennifer\", \"Bryan\", role = \"ctb\"), person(\"Richard\", \"Cotton\", role = \"ctb\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", + "Description": "A set of functions to run code 'with' safely and temporarily modified global state. Many of these functions were originally a part of the 'devtools' package, this provides a simple package with limited dependencies to provide access to these functions.", + "License": "MIT + file LICENSE", + "URL": "https://withr.r-lib.org, https://github.com/r-lib/withr#readme", + "BugReports": "https://github.com/r-lib/withr/issues", + "Depends": [ + "R (>= 3.6.0)" + ], + "Imports": [ + "graphics", + "grDevices" + ], + "Suggests": [ + "callr", + "DBI", + "knitr", + "methods", + "rlang", + "rmarkdown (>= 2.12)", + "RSQLite", + "testthat (>= 3.0.0)" + ], + "VignetteBuilder": "knitr", + "Config/Needs/website": "tidyverse/tidytemplate", + "Config/testthat/edition": "3", + "Encoding": "UTF-8", + "RoxygenNote": "7.3.2", + "Collate": "'aaa.R' 'collate.R' 'connection.R' 'db.R' 'defer-exit.R' 'standalone-defer.R' 'defer.R' 'devices.R' 'local_.R' 'with_.R' 'dir.R' 'env.R' 'file.R' 'language.R' 'libpaths.R' 'locale.R' 'makevars.R' 'namespace.R' 'options.R' 'par.R' 'path.R' 'rng.R' 'seed.R' 'wrap.R' 'sink.R' 'tempfile.R' 'timezone.R' 'torture.R' 'utils.R' 'with.R'", + "NeedsCompilation": "no", + "Author": "Jim Hester [aut], Lionel Henry [aut, cre], Kirill Müller [aut], Kevin Ushey [aut], Hadley Wickham [aut], Winston Chang [aut], Jennifer Bryan [ctb], Richard Cotton [ctb], Posit Software, PBC [cph, fnd]", + "Maintainer": "Lionel Henry ", + "Repository": "CRAN" + }, + "wk": { + "Package": "wk", + "Version": "0.9.5", + "Source": "Repository", + "Title": "Lightweight Well-Known Geometry Parsing", + "Authors@R": "c( person(given = \"Dewey\", family = \"Dunnington\", role = c(\"aut\", \"cre\"), email = \"dewey@fishandwhistle.net\", comment = c(ORCID = \"0000-0002-9415-4582\")), person(given = \"Edzer\", family = \"Pebesma\", role = c(\"aut\"), email = \"edzer.pebesma@uni-muenster.de\", comment = c(ORCID = \"0000-0001-8049-7069\")), person(given = \"Anthony\", family = \"North\", email = \"anthony.jl.north@gmail.com\", role = c(\"ctb\")) )", + "Maintainer": "Dewey Dunnington ", + "Description": "Provides a minimal R and C++ API for parsing well-known binary and well-known text representation of geometries to and from R-native formats. Well-known binary is compact and fast to parse; well-known text is human-readable and is useful for writing tests. These formats are useful in R only if the information they contain can be accessed in R, for which high-performance functions are provided here.", + "License": "MIT + file LICENSE", + "Encoding": "UTF-8", + "RoxygenNote": "7.3.2", + "Suggests": [ + "testthat (>= 3.0.0)", + "vctrs (>= 0.3.0)", + "sf", + "tibble", + "readr" + ], + "URL": "https://paleolimbot.github.io/wk/, https://github.com/paleolimbot/wk", + "BugReports": "https://github.com/paleolimbot/wk/issues", + "Config/testthat/edition": "3", + "Depends": [ + "R (>= 2.10)" + ], + "LazyData": "true", + "NeedsCompilation": "yes", + "Author": "Dewey Dunnington [aut, cre] (ORCID: ), Edzer Pebesma [aut] (ORCID: ), Anthony North [ctb]", + "Repository": "CRAN" + }, + "xfun": { + "Package": "xfun", + "Version": "0.60", + "Source": "Repository", + "Type": "Package", + "Title": "Supporting Functions for Packages Maintained by 'Yihui Xie'", + "Authors@R": "c( person(\"Yihui\", \"Xie\", role = c(\"aut\", \"cre\", \"cph\"), email = \"xie@yihui.name\", comment = c(ORCID = \"0000-0003-0645-5666\", URL = \"https://yihui.org\")), person(\"Wush\", \"Wu\", role = \"ctb\"), person(\"Daijiang\", \"Li\", role = \"ctb\"), person(\"Xianying\", \"Tan\", role = \"ctb\"), person(\"Salim\", \"Brüggemann\", role = \"ctb\", email = \"salim-b@pm.me\", comment = c(ORCID = \"0000-0002-5329-5987\")), person(\"Christophe\", \"Dervieux\", role = \"ctb\"), person() )", + "Description": "Miscellaneous functions commonly used in other packages maintained by 'Yihui Xie'.", + "Depends": [ + "R (>= 3.2.0)" + ], + "Imports": [ + "grDevices", + "stats", + "tools" + ], + "Suggests": [ + "testit", + "parallel", + "codetools", + "methods", + "rstudioapi", + "tinytex (>= 0.30)", + "mime", + "litedown (>= 0.6)", + "commonmark", + "knitr (>= 1.50)", + "remotes", + "pak", + "curl", + "xml2", + "jsonlite", + "magick", + "yaml", + "data.table", + "qs2" + ], + "License": "MIT + file LICENSE", + "URL": "https://github.com/yihui/xfun", + "BugReports": "https://github.com/yihui/xfun/issues", + "Encoding": "UTF-8", + "VignetteBuilder": "litedown", + "Config/roxygen2/version": "8.0.0", + "NeedsCompilation": "yes", + "Author": "Yihui Xie [aut, cre, cph] (ORCID: , URL: https://yihui.org), Wush Wu [ctb], Daijiang Li [ctb], Xianying Tan [ctb], Salim Brüggemann [ctb] (ORCID: ), Christophe Dervieux [ctb]", + "Maintainer": "Yihui Xie ", + "Repository": "CRAN" + }, + "xml2": { + "Package": "xml2", + "Version": "1.6.0", + "Source": "Repository", + "Title": "Parse XML", + "Authors@R": "c( person(\"Hadley\", \"Wickham\", role = \"aut\"), person(\"Jim\", \"Hester\", role = \"aut\"), person(\"Jeroen\", \"Ooms\", email = \"jeroenooms@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")), person(\"R Foundation\", role = \"ctb\", comment = \"Copy of R-project homepage cached as example\") )", + "Description": "Bindings to 'libxml2' for working with XML data using a simple, consistent interface based on 'XPath' expressions. Also supports XML schema validation; for 'XSLT' transformations see the 'xslt' package.", + "License": "MIT + file LICENSE", + "URL": "https://xml2.r-lib.org, https://r-lib.r-universe.dev/xml2", + "BugReports": "https://github.com/r-lib/xml2/issues", + "Depends": [ + "R (>= 3.6.0)" + ], + "Imports": [ + "cli", + "methods", + "rlang (>= 1.1.0)" + ], + "Suggests": [ + "covr", + "curl", + "httr", + "knitr", + "mockery", + "rmarkdown", + "testthat (>= 3.2.0)", + "xslt" + ], + "VignetteBuilder": "knitr", + "Config/Needs/website": "tidyverse/tidytemplate", + "Encoding": "UTF-8", + "RoxygenNote": "7.3.3", + "SystemRequirements": "libxml2: libxml2-dev (deb), libxml2-devel (rpm)", + "Collate": "'S4.R' 'as_list.R' 'xml_parse.R' 'as_xml_document.R' 'classes.R' 'format.R' 'import-standalone-obj-type.R' 'import-standalone-purrr.R' 'import-standalone-types-check.R' 'init.R' 'nodeset_apply.R' 'paths.R' 'utils.R' 'xml2-package.R' 'xml_attr.R' 'xml_children.R' 'xml_document.R' 'xml_find.R' 'xml_missing.R' 'xml_modify.R' 'xml_name.R' 'xml_namespaces.R' 'xml_node.R' 'xml_nodeset.R' 'xml_path.R' 'xml_schema.R' 'xml_serialize.R' 'xml_structure.R' 'xml_text.R' 'xml_type.R' 'xml_url.R' 'xml_write.R'", + "Config/testthat/edition": "3", + "NeedsCompilation": "yes", + "Author": "Hadley Wickham [aut], Jim Hester [aut], Jeroen Ooms [aut, cre], Posit Software, PBC [cph, fnd], R Foundation [ctb] (Copy of R-project homepage cached as example)", + "Maintainer": "Jeroen Ooms ", + "Repository": "CRAN" + }, + "xtable": { + "Package": "xtable", + "Version": "1.8-8", + "Source": "Repository", + "Date": "2026-02-20", + "Title": "Export Tables to LaTeX or HTML", + "Authors@R": "c(person(\"David B.\", \"Dahl\", role=\"aut\"), person(\"David\", \"Scott\", role=c(\"aut\",\"cre\"), email=\"d.scott@auckland.ac.nz\"), person(\"Charles\", \"Roosen\", role=\"aut\"), person(\"Arni\", \"Magnusson\", role=\"aut\"), person(\"Jonathan\", \"Swinton\", role=\"aut\"), person(\"Ajay\", \"Shah\", role=\"ctb\"), person(\"Arne\", \"Henningsen\", role=\"ctb\"), person(\"Benno\", \"Puetz\", role=\"ctb\"), person(\"Bernhard\", \"Pfaff\", role=\"ctb\"), person(\"Claudio\", \"Agostinelli\", role=\"ctb\"), person(\"Claudius\", \"Loehnert\", role=\"ctb\"), person(\"David\", \"Mitchell\", role=\"ctb\"), person(\"David\", \"Whiting\", role=\"ctb\"), person(\"Fernando da\", \"Rosa\", role=\"ctb\"), person(\"Guido\", \"Gay\", role=\"ctb\"), person(\"Guido\", \"Schulz\", role=\"ctb\"), person(\"Ian\", \"Fellows\", role=\"ctb\"), person(\"Jeff\", \"Laake\", role=\"ctb\"), person(\"John\", \"Walker\", role=\"ctb\"), person(\"Jun\", \"Yan\", role=\"ctb\"), person(\"Liviu\", \"Andronic\", role=\"ctb\"), person(\"Markus\", \"Loecher\", role=\"ctb\"), person(\"Martin\", \"Gubri\", role=\"ctb\"), person(\"Matthieu\", \"Stigler\", role=\"ctb\"), person(\"Robert\", \"Castelo\", role=\"ctb\"), person(\"Seth\", \"Falcon\", role=\"ctb\"), person(\"Stefan\", \"Edwards\", role=\"ctb\"), person(\"Sven\", \"Garbade\", role=\"ctb\"), person(\"Uwe\", \"Ligges\", role=\"ctb\"))", + "Maintainer": "David Scott ", + "Imports": [ + "stats", + "utils", + "methods" + ], + "Suggests": [ + "knitr", + "zoo", + "survival", + "glue", + "tinytex" + ], + "VignetteBuilder": "knitr", + "Description": "Coerce data to LaTeX and HTML tables.", + "URL": "http://xtable.r-forge.r-project.org/", + "Depends": [ + "R (>= 2.10.0)" + ], + "License": "GPL (>= 2)", + "Repository": "CRAN", + "NeedsCompilation": "no", + "Author": "David B. Dahl [aut], David Scott [aut, cre], Charles Roosen [aut], Arni Magnusson [aut], Jonathan Swinton [aut], Ajay Shah [ctb], Arne Henningsen [ctb], Benno Puetz [ctb], Bernhard Pfaff [ctb], Claudio Agostinelli [ctb], Claudius Loehnert [ctb], David Mitchell [ctb], David Whiting [ctb], Fernando da Rosa [ctb], Guido Gay [ctb], Guido Schulz [ctb], Ian Fellows [ctb], Jeff Laake [ctb], John Walker [ctb], Jun Yan [ctb], Liviu Andronic [ctb], Markus Loecher [ctb], Martin Gubri [ctb], Matthieu Stigler [ctb], Robert Castelo [ctb], Seth Falcon [ctb], Stefan Edwards [ctb], Sven Garbade [ctb], Uwe Ligges [ctb]" + }, + "yaml": { + "Package": "yaml", + "Version": "2.3.12", + "Source": "Repository", + "Type": "Package", + "Title": "Methods to Convert R Data to YAML and Back", + "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"cre\", comment = c(ORCID = \"0000-0003-4757-117X\")), person(\"Shawn\", \"Garbett\", , \"shawn.garbett@vumc.org\", role = \"ctb\", comment = c(ORCID = \"0000-0003-4079-5621\")), person(\"Jeremy\", \"Stephens\", role = c(\"aut\", \"ctb\")), person(\"Kirill\", \"Simonov\", role = \"aut\"), person(\"Yihui\", \"Xie\", role = \"ctb\", comment = c(ORCID = \"0000-0003-0645-5666\")), person(\"Zhuoer\", \"Dong\", role = \"ctb\"), person(\"Jeffrey\", \"Horner\", role = \"ctb\"), person(\"reikoch\", role = \"ctb\"), person(\"Will\", \"Beasley\", role = \"ctb\", comment = c(ORCID = \"0000-0002-5613-5006\")), person(\"Brendan\", \"O'Connor\", role = \"ctb\"), person(\"Michael\", \"Quinn\", role = \"ctb\"), person(\"Charlie\", \"Gao\", role = \"ctb\"), person(c(\"Gregory\", \"R.\"), \"Warnes\", role = \"ctb\"), person(c(\"Zhian\", \"N.\"), \"Kamvar\", role = \"ctb\") )", + "Description": "Implements the 'libyaml' 'YAML' 1.1 parser and emitter () for R.", + "License": "BSD_3_clause + file LICENSE", + "URL": "https://yaml.r-lib.org, https://github.com/r-lib/yaml/", + "BugReports": "https://github.com/r-lib/yaml/issues", + "Suggests": [ + "knitr", + "rmarkdown", + "testthat (>= 3.0.0)" + ], + "Config/testthat/edition": "3", + "Config/Needs/website": "tidyverse/tidytemplate", + "Encoding": "UTF-8", + "RoxygenNote": "7.3.3", + "VignetteBuilder": "knitr", + "NeedsCompilation": "yes", + "Author": "Hadley Wickham [cre] (ORCID: ), Shawn Garbett [ctb] (ORCID: ), Jeremy Stephens [aut, ctb], Kirill Simonov [aut], Yihui Xie [ctb] (ORCID: ), Zhuoer Dong [ctb], Jeffrey Horner [ctb], reikoch [ctb], Will Beasley [ctb] (ORCID: ), Brendan O'Connor [ctb], Michael Quinn [ctb], Charlie Gao [ctb], Gregory R. Warnes [ctb], Zhian N. Kamvar [ctb]", + "Maintainer": "Hadley Wickham ", + "Repository": "CRAN" + }, + "zip": { + "Package": "zip", + "Version": "3.0.1", + "Source": "Repository", + "Title": "Cross-Platform 'zip' Compression", + "Authors@R": "c( person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Kuba\", \"Podgórski\", role = \"ctb\"), person(\"Rich\", \"Geldreich\", role = \"ctb\"), person(\"Arm Limited\", role = c(\"ctb\", \"cph\"), comment = \"bundled Mbed TLS crypto subset in src/mbedtls/ (Apache-2.0)\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )", + "Description": "Cross-Platform 'zip' Compression Library. A replacement for the 'zip' function, that does not require any additional external tools on any platform.", + "License": "MIT + file LICENSE", + "URL": "https://github.com/r-lib/zip, https://r-lib.github.io/zip/", + "BugReports": "https://github.com/r-lib/zip/issues", + "LinkingTo": [ + "cli" + ], + "Suggests": [ + "callr", + "cli", + "curl", + "pillar", + "processx", + "R6", + "testthat", + "webfakes", + "withr" + ], + "Config/Needs/website": "tidyverse/tidytemplate", + "Config/testthat/edition": "3", + "Config/testthat/parallel": "true", + "Config/testthat/start-first": "large-files, http", + "Config/usethis/last-upkeep": "2025-05-07", + "Encoding": "UTF-8", + "Config/roxygen2/version": "8.0.0", + "NeedsCompilation": "yes", + "Author": "Gábor Csárdi [aut, cre], Kuba Podgórski [ctb], Rich Geldreich [ctb], Arm Limited [ctb, cph] (bundled Mbed TLS crypto subset in src/mbedtls/ (Apache-2.0)), Posit Software, PBC [cph, fnd] (ROR: )", + "Maintainer": "Gábor Csárdi ", + "Repository": "CRAN" + } + } +} diff --git a/provisional-ratio-curves/renv/.gitignore b/ratio-analysis/renv/.gitignore similarity index 100% rename from provisional-ratio-curves/renv/.gitignore rename to ratio-analysis/renv/.gitignore diff --git a/provisional-ratio-curves/renv/activate.R b/ratio-analysis/renv/activate.R similarity index 91% rename from provisional-ratio-curves/renv/activate.R rename to ratio-analysis/renv/activate.R index 2753ae5..20ffd44 100644 --- a/provisional-ratio-curves/renv/activate.R +++ b/ratio-analysis/renv/activate.R @@ -2,7 +2,8 @@ local({ # the requested version of renv - version <- "1.1.5" + version <- "1.2.3" + attr(version, "md5") <- "1bd9f58e1cfe27ce035933937c6f03de" attr(version, "sha") <- NULL # the project directory @@ -168,6 +169,16 @@ local({ if (quiet) return(invisible()) + # also check for config environment variables that should suppress messages + # https://github.com/rstudio/renv/issues/2214 + enabled <- Sys.getenv("RENV_CONFIG_STARTUP_QUIET", unset = NA) + if (!is.na(enabled) && tolower(enabled) %in% c("true", "1")) + return(invisible()) + + enabled <- Sys.getenv("RENV_CONFIG_SYNCHRONIZED_CHECK", unset = NA) + if (!is.na(enabled) && tolower(enabled) %in% c("false", "0")) + return(invisible()) + msg <- sprintf(fmt, ...) cat(msg, file = stdout(), sep = if (appendLF) "\n" else "") @@ -215,6 +226,20 @@ local({ section <- header(sprintf("Bootstrapping renv %s", friendly)) catf(section) + # ensure the target library path exists; required for file.copy(..., recursive = TRUE) + dir.create(library, showWarnings = FALSE, recursive = TRUE) + + # try to install renv from cache + md5 <- attr(version, "md5", exact = TRUE) + if (length(md5)) { + pkgpath <- renv_bootstrap_find(version) + if (length(pkgpath) && file.exists(pkgpath)) { + ok <- file.copy(pkgpath, library, recursive = TRUE) + if (isTRUE(ok)) + return(invisible()) + } + } + # attempt to download renv catf("- Downloading renv ... ", appendLF = FALSE) withCallingHandlers( @@ -240,7 +265,6 @@ local({ # add empty line to break up bootstrapping from normal output catf("") - return(invisible()) } @@ -257,12 +281,20 @@ local({ repos <- Sys.getenv("RENV_CONFIG_REPOS_OVERRIDE", unset = NA) if (!is.na(repos)) { - # check for RSPM; if set, use a fallback repository for renv - rspm <- Sys.getenv("RSPM", unset = NA) - if (identical(rspm, repos)) - repos <- c(RSPM = rspm, CRAN = cran) + # split on ';' if present + parts <- strsplit(repos, ";", fixed = TRUE)[[1L]] - return(repos) + # split into named repositories if present + idx <- regexpr("=", parts, fixed = TRUE) + keys <- substring(parts, 1L, idx - 1L) + vals <- substring(parts, idx + 1L) + names(vals) <- keys + + # if we have a single unnamed repository, call it CRAN + if (length(vals) == 1L && identical(keys, "")) + names(vals) <- "CRAN" + + return(vals) } @@ -511,6 +543,51 @@ local({ } + renv_bootstrap_find <- function(version) { + + path <- renv_bootstrap_find_cache(version) + if (length(path) && file.exists(path)) { + catf("- Using renv %s from global package cache", version) + return(path) + } + + } + + renv_bootstrap_find_cache <- function(version) { + + md5 <- attr(version, "md5", exact = TRUE) + if (is.null(md5)) + return() + + # infer path to renv cache + cache <- Sys.getenv("RENV_PATHS_CACHE", unset = "") + if (!nzchar(cache)) { + root <- Sys.getenv("RENV_PATHS_ROOT", unset = NA) + if (!is.na(root)) + cache <- file.path(root, "cache") + } + + if (!nzchar(cache)) { + tools <- asNamespace("tools") + if (is.function(tools$R_user_dir)) { + root <- tools$R_user_dir("renv", "cache") + cache <- file.path(root, "cache") + } + } + + # start completing path to cache + file.path( + cache, + renv_bootstrap_cache_version(), + renv_bootstrap_platform_prefix(), + "renv", + version, + md5, + "renv" + ) + + } + renv_bootstrap_download_tarball <- function(version) { # if the user has provided the path to a tarball via @@ -979,7 +1056,7 @@ local({ renv_bootstrap_validate_version_release <- function(version, description) { expected <- description[["Version"]] - is.character(expected) && identical(expected, version) + is.character(expected) && identical(c(expected), c(version)) } renv_bootstrap_hash_text <- function(text) { @@ -1158,6 +1235,21 @@ local({ } renv_bootstrap_run <- function(project, libpath, version) { + tryCatch( + renv_bootstrap_run_impl(project, libpath, version), + error = function(e) { + msg <- paste( + "failed to bootstrap renv: the project will not be loaded.", + paste("Reason:", conditionMessage(e)), + "Use `renv::activate()` to re-initialize the project.", + sep = "\n" + ) + warning(msg, call. = FALSE) + } + ) + } + + renv_bootstrap_run_impl <- function(project, libpath, version) { # perform bootstrap bootstrap(version, libpath) @@ -1181,6 +1273,18 @@ local({ } + renv_bootstrap_cache_version <- function() { + # NOTE: users should normally not override the cache version; + # this is provided just to make testing easier + Sys.getenv("RENV_CACHE_VERSION", unset = "v5") + } + + renv_bootstrap_cache_version_previous <- function() { + version <- renv_bootstrap_cache_version() + number <- as.integer(substring(version, 2L)) + paste("v", number - 1L, sep = "") + } + renv_json_read <- function(file = NULL, text = NULL) { jlerr <- NULL