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Copy pathseqtk_batch.sh
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Copy pathseqtk_batch.sh
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executable file
·15 lines (12 loc) · 864 Bytes
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DATA=$1
#split -d -l 44891827 tmp/data.qualFilteredIDs.list
seqtk subseq $DATA tmp/x00 | sed 's/ /#/g; s/\\//#/g' | gzip > tmp/x00.fastq.gz
seqtk subseq $DATA tmp/x01 | sed 's/ /#/g; s/\\//#/g' | gzip > tmp/x01.fastq.gz
seqtk subseq $DATA tmp/x02 | sed 's/ /#/g; s/\\//#/g' | gzip > tmp/x02.fastq.gz
seqtk subseq $DATA tmp/x03 | sed 's/ /#/g; s/\\//#/g' | gzip > tmp/x03.fastq.gz
seqtk subseq $DATA tmp/x04 | sed 's/ /#/g; s/\\//#/g' | gzip > tmp/x04.fastq.gz
seqtk subseq $DATA tmp/x05 | sed 's/ /#/g; s/\\//#/g' | gzip > tmp/x05.fastq.gz
seqtk subseq $DATA tmp/x06 | sed 's/ /#/g; s/\\//#/g' | gzip > tmp/x06.fastq.gz
seqtk subseq $DATA tmp/x07 | sed 's/ /#/g; s/\\//#/g' | gzip > tmp/x07.fastq.gz
seqtk subseq $DATA tmp/x08 | sed 's/ /#/g; s/\\//#/g' | gzip > tmp/x08.fastq.gz
seqtk subseq $DATA tmp/x09 | sed 's/ /#/g; s/\\//#/g' | gzip > tmp/x09.fastq.gz