Hi,
The following command throws error.
cat group1/temp/combLib.genic.exon.bed.seq|get_circ_seq.py > group1/temp/combLib.genic.fa
Error:
Traceback (most recent call last):
File "../../circRNAFinder/src/get_circ_seq.py", line 19, in <module>
num = int(ID_list[-1]) + 1
ValueError: invalid literal for int() with base 10: '0(+)'
My group1/temp/combLib.genic.exon.bed.seq file looks like this (first line).
chr10|103281396|103298128|+|8|0(+) ACAAAACTTGCCAATGGCACTTCCAGTATGATTGTGCCCAAGCAACGGAAACTCTCAGCAAGCTATGAAAAGGAAAAGGAACTGTGTGTCAAATACTTTGAGCAGTGGTCAGAGTCAGATCAAGTGGAATTTGTGGAACATCTTATATCCCAAATGTGTCATTACCAACATGGGCACATAAACTCGTATCTTAAACCTATGTTGCAGAGAGATTTCATAACTGCTCTGCCAG
Is it a bug or am I doing something wrong?
BR,
bishwaG
Hi,
The following command throws error.
Error:
My
group1/temp/combLib.genic.exon.bed.seqfile looks like this (first line).Is it a bug or am I doing something wrong?
BR,
bishwaG