Skip to content

Got error running get_circ_seq.py. A bug? #1

@bishwaG

Description

@bishwaG

Hi,

The following command throws error.

cat group1/temp/combLib.genic.exon.bed.seq|get_circ_seq.py > group1/temp/combLib.genic.fa

Error:

Traceback (most recent call last):
  File "../../circRNAFinder/src/get_circ_seq.py", line 19, in <module>
    num = int(ID_list[-1]) + 1
ValueError: invalid literal for int() with base 10: '0(+)'

My group1/temp/combLib.genic.exon.bed.seq file looks like this (first line).

chr10|103281396|103298128|+|8|0(+)	ACAAAACTTGCCAATGGCACTTCCAGTATGATTGTGCCCAAGCAACGGAAACTCTCAGCAAGCTATGAAAAGGAAAAGGAACTGTGTGTCAAATACTTTGAGCAGTGGTCAGAGTCAGATCAAGTGGAATTTGTGGAACATCTTATATCCCAAATGTGTCATTACCAACATGGGCACATAAACTCGTATCTTAAACCTATGTTGCAGAGAGATTTCATAACTGCTCTGCCAG

Is it a bug or am I doing something wrong?

BR,
bishwaG

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions