We want to add three main components to the output:
- RAD markings on the output panels.
- A table with the RADs.
- A folder with the figures for the intensity profiles of each plate.
In the UI, the following things will be added:
- A checkbox marking if the RADs should be computed. Default: False. (Can take time, and most people don't need it.)
- A checkbox marking if the panel outputs should have the RADs marked on them. Default: False.
- A checkbox marking if we should output the intensity profiles. Default: False. (These can also take a while.)
- A textbox with comma-separated RAD values. Default: "20, 80". The RAD values designate % inhibition (so, 20% and 80% inhibition of growth, respectively).
- A textbox with comma-separated color values for the colors of the RAD markings. Default: "red, red".
- A textbox with the width of the RAD markings. Default: 1.
If the compute-RAD checkbox is checked, a 'rads.csv' will be created in the output folder, with the following columns:
- "Plate number"
- "Timepoint (hours)" (the cell values will be 24/48/72).
- A column per each RAD, named "RADXX", where XX is the RAD value (so, the default will be two columns - "RAD20" and "RAD80").
If the mark-RAD checkbox will be checked, we assume that the compute-RAD checkbox is also checked (even if it isn't - we have to compute all of these things anyway). We will add the marks on the panels as indicated.
If the intensity-profile checkbox is checked, we will also assume the compute-RAD chekbox is checked (but not the mark-RAD checkbox). We will create another subfolder in the output folder, called 'intensity_profiles', which will have an intensity figure per each photo. The name will be of the template: "{plate number}_{24/48/72}hr.png".
We want to add three main components to the output:
In the UI, the following things will be added:
If the compute-RAD checkbox is checked, a 'rads.csv' will be created in the output folder, with the following columns:
If the mark-RAD checkbox will be checked, we assume that the compute-RAD checkbox is also checked (even if it isn't - we have to compute all of these things anyway). We will add the marks on the panels as indicated.
If the intensity-profile checkbox is checked, we will also assume the compute-RAD chekbox is checked (but not the mark-RAD checkbox). We will create another subfolder in the output folder, called 'intensity_profiles', which will have an intensity figure per each photo. The name will be of the template: "{plate number}_{24/48/72}hr.png".