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TE insertions with zero length #41

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@lilypeck

Hello

Thanks for making this great tool

Some TE insertions that are called have zero length in the bed file but not in the fasta, e.g.

seqkit fx2tab -l -n barcode10_HP1-refT1/barcode10_HP1.telr.te.fasta | grep "rnd-1_family-337"
contig_1873_2633_2633#rnd-1_family-337	2493
grep "rnd-1_family-337" barcode10_HP1-refT1/barcode10_HP1.telr.bed 
contig_1873	2633	2633	rnd-1_family-337	.	-

I am wondering what these indicate? This is what I would expect a deletion to look like but my understanding is that TELR only calls insertions?

Thanks in advance

Lily

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