diff --git a/tests/smoke_tests.R b/tests/smoke_tests.R new file mode 100644 index 0000000..b94c084 --- /dev/null +++ b/tests/smoke_tests.R @@ -0,0 +1,15 @@ +library(rmarkdown) +library(gert) +library(knitr) + +f <- git_clone("https://github.com/DataBiosphere/terra-docker") + +## Covert to R +input <- file.path(f, "terra-jupyter-bioconductor/tests/smoke_test.ipynb") +output <- xfun::with_ext(input, "Rmd") +rmarkdown::convert_ipynb(input, output = output) +r_script <- knitr::purl(output) + +## Run rscript + +source(r_script, max=Inf, echo=TRUE)