diff --git a/.github/workflows/docs.yml b/.github/workflows/docs.yml new file mode 100644 index 0000000..9f80c8f --- /dev/null +++ b/.github/workflows/docs.yml @@ -0,0 +1,23 @@ +name: docs +on: + push: + branches: [main] + +jobs: + deploy: + runs-on: ubuntu-latest + + steps: + - uses: actions/checkout@v6 + + - name: Setup python + uses: actions/setup-python@v6 + with: + python-version-file: "pyproject.toml" + + - name: Setup uv + uses: astral-sh/setup-uv@08807647e7069bb48b6ef5acd8ec9567f424441b # v8.1.0 + + - name: Build docs with mkdocs + run: | + uv run --group docs mkdocs gh-deploy -v --clean --strict --force diff --git a/.github/workflows/python-app.yml b/.github/workflows/python-app.yml index 108f319..3a2547e 100644 --- a/.github/workflows/python-app.yml +++ b/.github/workflows/python-app.yml @@ -24,11 +24,11 @@ jobs: - name: Setup uv uses: astral-sh/setup-uv@08807647e7069bb48b6ef5acd8ec9567f424441b # v8.1.0 - - name: Run pytest + - name: Run tests with pytest run: | uv run --group dev --extra benchmark pytest -sv - - name: Upload artifacts + - name: Upload artifacts from tests uses: actions/upload-artifact@v4 with: name: artifacts diff --git a/DEVELOPMENT.md b/DEVELOPMENT.md index 0142f9a..22cf20a 100644 --- a/DEVELOPMENT.md +++ b/DEVELOPMENT.md @@ -1,40 +1,27 @@ +# DEVELOPMENT -data_streaming_accelerators/ -├── .github/workflows/ -├── docs/ -│ └── mkdocs.yml -├── src/ -│ └── data_streaming_accelerators/ -│ ├── __init__.py -│ ├── __main__.py -│ ├── core/ -│ | ├── dynamic_interval_management.py -│ | ├── dynamic_point_aggregation.py -│ | └── suffix_pattern_recognition.py -│ ├── api.py -├── tests/ -│ ├── conftest.py -│ ├── test_api.py -│ ├── test_core.py -├── .gitignore -├── pyproject.toml -├── README.md -└── LICENSE +## Run tests with pytest ```sh -# https://docs.astral.sh/uv/getting-started/installation/ -# install uv from official installer -wget -qO- https://astral.sh/uv/install.sh | sh -``` +# Option 1: All tests [Default] +uv run --group dev --extra benchmark pytest -sv -``` -# Run specific markers in pytest +# Option 2: Functional tests only uv run --group dev --extra benchmark pytest -sv -m func + +# Option 3: Performance tests only uv run --group dev --extra benchmark pytest -sv -m perf +``` -# Run pytest -uv run --group dev --extra benchmark pytest -sv +## Build docs with mkdocs + +```sh +# Option 1: Build and deploy [Default] +uv run --group docs mkdocs gh-deploy -v --clean --strict --force + +# Option 2: Build only +uv run --group docs mkdocs build -v --clean --strict -# Watch run until it completes. -gh run watch +# Option 3: Deploy only using local server +uv run --group docs mkdocs serve -v --clean --strict ``` diff --git a/docs/dynamic_interval_management/static/pruning-diagram.png b/docs/dynamic_interval_management/static/pruning-diagram.png deleted file mode 100644 index 9958e49..0000000 Binary files a/docs/dynamic_interval_management/static/pruning-diagram.png and /dev/null differ diff --git a/docs/index.md b/docs/index.md new file mode 100644 index 0000000..7b64255 --- /dev/null +++ b/docs/index.md @@ -0,0 +1,30 @@ +# Data Streaming Accelerators + +![Python CI](https://github.com/achekery/data-streaming/actions/workflows/python-app.yml/badge.svg) + +## 1. Summary + +### [Dynamic Interval Management](modules/dynamic_interval_management) + +--8<-- "modules/dynamic_interval_management/README.md:summary" + +![Graph for Performance Report](modules/dynamic_interval_management/static/performance-report-1280x640.png) + +### Dynamic Point Aggregation + +--8<-- "modules/dynamic_point_aggregation/README.md:summary" + +### Suffix Pattern Recognition + +--8<-- "modules/suffix_pattern_recognition/README.md:summary" + + +## 2. Getting Started + +This design requires **Python 3.13+**. + +To run the regression tests for this design: + +```bash +uv run --group dev --extra benchmark pytest -sv +``` diff --git a/docs/javascripts/mathjax.js b/docs/javascripts/mathjax.js new file mode 100644 index 0000000..b186af6 --- /dev/null +++ b/docs/javascripts/mathjax.js @@ -0,0 +1,16 @@ +window.MathJax = { + tex: { + inlineMath: [["\\(", "\\)"]], + displayMath: [["\\[", "\\]"]], + processEscapes: true, + processEnvironments: true + }, + options: { + ignoreHtmlClass: ".*|", + processHtmlClass: "arithmatex" + } +}; + +document.subscribe(() => { + MathJax.typesetPromise() +}) diff --git a/docs/dynamic_interval_management/README.md b/docs/modules/dynamic_interval_management/README.md similarity index 93% rename from docs/dynamic_interval_management/README.md rename to docs/modules/dynamic_interval_management/README.md index 39f467c..21111fc 100644 --- a/docs/dynamic_interval_management/README.md +++ b/docs/modules/dynamic_interval_management/README.md @@ -2,7 +2,11 @@ ![Python CI](https://github.com/achekery/data-streaming/actions/workflows/python-app.yml/badge.svg) ## 1. Design Summary + The theoretical lower bound for merging $N$ static intervals is $\Omega(N \log N)$ due to the sorting requirement. By focusing on interval edges rather than the source intervals themselves, we can focus on efficient algorithms with compact implementation. However, in **Online Streaming Environments**, the task shifts from batch data loading (static intervals) to streaming data ingestion (dynamic intervals). + + +![Graph for Performance Report](static/performance-report-1280x640.png) ### 📊 Complexity Analysis @@ -17,11 +21,13 @@ The theoretical lower bound for merging $N$ static intervals is $\Omega(N \log N The advantage of an Augmented AVL Interval Tree is its ability to prune search branches that cannot contain an overlap, ensuring $O(\log N)$ search time. -![Diagram of Pruning Logic](static/pruning-diagram.png) +```mermaid +{% include "modules/dynamic_interval_management/static/pruning-mermaid.txt" %} +``` ## 2. Design Approaches -### Optimal Approaches for Batch Data (Static Intervals) +## Optimal Approaches for Batch Data (Static Intervals) * **Sweep-line (Variant 1):** Uses a sorted list of edge objects and a counter. * **Complexity (Batch):** $O(N \log N)$ setup, $O(N)$ calculation. * **Complexity (Streaming):** $O(N \log N)$ per `insert`/`put` operation. @@ -31,7 +37,7 @@ The advantage of an Augmented AVL Interval Tree is its ability to prune search b * **Complexity (Streaming):** $O(N \log N)$ per `insert`/`put` operation. * **Verdict:** Suitable for batch case due to best-in-class ~7ms benchmark with static intervals. Not suitable for streaming case due to high complexity. -### Optimal Approaches for Streaming Data (Dynamic Intervals) +## Optimal Approaches for Streaming Data (Dynamic Intervals) * **Augmented AVL Interval Tree (Variant 3):** A stateful, self-balancing BST. * **Complexity (Batch):** $O(N \log N)$ setup, $O(N)$ calculation. * **Complexity (Streaming):** $O(\log N)$ per `insert`/`put` operation. @@ -53,8 +59,6 @@ In benchmarks with dynamic intervals up to $N=3000$, the Interval Tree (Variant | 2000 | 0.6743 | 0.0383 | 17.6x | | 3000 | 1.6093 | 0.0318 | **50.6x** | -![Graph for Performance Report](static/performance-report-1280x640.png) - ## 4. Design Optimizations ### Augmented Metadata @@ -68,3 +72,7 @@ By implementing a **Sentinel Node Architecture** with a **Two-Down** AVL balanci ### Python Object-Model Tuning To reduce object-overhead due to the Python object-model, I implemented **Attribute Flattening**. After replacing packed collections (`self.interval[0]`) with discrete integers (`self.lo`, `self.hi`), I reduced constant factors in the hot execution path and achieved a **15% reduction** in benchmarks with static intervals. + +## 5. API Reference + +::: data_streaming_accelerators.core.dynamic_interval_management diff --git a/docs/dynamic_interval_management/static/performance-report-1280x640.png b/docs/modules/dynamic_interval_management/static/performance-report-1280x640.png similarity index 100% rename from docs/dynamic_interval_management/static/performance-report-1280x640.png rename to docs/modules/dynamic_interval_management/static/performance-report-1280x640.png diff --git a/docs/dynamic_interval_management/static/pruning-mermaid.txt b/docs/modules/dynamic_interval_management/static/pruning-mermaid.txt similarity index 100% rename from docs/dynamic_interval_management/static/pruning-mermaid.txt rename to docs/modules/dynamic_interval_management/static/pruning-mermaid.txt diff --git a/docs/dynamic_point_aggregation/README.md b/docs/modules/dynamic_point_aggregation/README.md similarity index 97% rename from docs/dynamic_point_aggregation/README.md rename to docs/modules/dynamic_point_aggregation/README.md index 32a0bc8..0c04b8d 100644 --- a/docs/dynamic_point_aggregation/README.md +++ b/docs/modules/dynamic_point_aggregation/README.md @@ -2,11 +2,13 @@ ![Python CI](https://github.com/achekery/data-streaming/actions/workflows/python-app.yml/badge.svg) ## 1. Design Summary + The optimal runtime complexity for dynamic point aggregation from $N$ point values to $O(N)$ disjoint intervals is $\Omega(N \log N)$ due to the ordering requirement. The request handler uses `put` requests to add new values and `get` requests to make a new interval sequence. Because offline scenarios (batch data) have known usage patterns, the batch variant (V1) can **optimize the hot path** by simplifying high-usage `put` requests to $O(1)$ and expanding low-usage `get` requests to $O(N \log N)$. However, because online scenarios (streaming data) do not have known usage patterns, the streaming variant (V2) must instead **balance complexity** between `put` requests ($O(\log N)$) and `get` requests ($O(N)$). + ### 📊 Complexity Analysis @@ -83,3 +85,7 @@ These results highlight that the batch variant (V1) is suitable for smaller data ### State Transitions To ensure new point values are correctly merged with existing disjoint intervals, I applied **Correctness by Design** by separately handling the 3 overlap cases: the enclosed-by case (early exit if lower and upper bounds at insertion point are already aligned), the adjacent-to case (join with 1 or 2 neighbors if lower and upper bounds at insertion point are adjacent), and the distinct-from case (insert as new lower and upper bounds). + +## 5. API Reference + +::: data_streaming_accelerators.core.dynamic_point_aggregation diff --git a/docs/dynamic_point_aggregation/static/speedup_by_data_size_request_distr0.1.png b/docs/modules/dynamic_point_aggregation/static/speedup_by_data_size_request_distr0.1.png similarity index 100% rename from docs/dynamic_point_aggregation/static/speedup_by_data_size_request_distr0.1.png rename to docs/modules/dynamic_point_aggregation/static/speedup_by_data_size_request_distr0.1.png diff --git a/docs/dynamic_point_aggregation/static/speedup_by_data_size_request_distr0.5.png b/docs/modules/dynamic_point_aggregation/static/speedup_by_data_size_request_distr0.5.png similarity index 100% rename from docs/dynamic_point_aggregation/static/speedup_by_data_size_request_distr0.5.png rename to docs/modules/dynamic_point_aggregation/static/speedup_by_data_size_request_distr0.5.png diff --git a/docs/suffix_pattern_recognition/README.md b/docs/modules/suffix_pattern_recognition/README.md similarity index 66% rename from docs/suffix_pattern_recognition/README.md rename to docs/modules/suffix_pattern_recognition/README.md index 58f08ed..3625c7e 100644 --- a/docs/suffix_pattern_recognition/README.md +++ b/docs/modules/suffix_pattern_recognition/README.md @@ -2,24 +2,28 @@ ![Python CI](https://github.com/achekery/data-streaming/actions/workflows/python-app.yml/badge.svg) ## 1. Design Summary -For suffix pattern recognition with $K$ suffix patterns (length $W$) and 1 query pattern (length $N$), using **reverse-traversal prefix tree search** is efficient because it can model common ancestor ordering with reverse encoding (by inserting suffix patterns in reverse order during setup and searching in reverse order during queries) and check the multiple patterns over a single root-to-leaf pass (taking runtime $O(K\*W)$ for one-time setup and $O(W)$ for each query). This improves over using direct suffix pattern search which must check the multiple patterns over separate array passes (taking $O(K\*W)$ for each query) or using forward-traversal prefix tree search which cannot model common ancestor ordering and must check the multiple patterns over separate root-to-leaf passes (taking runtime $O(K\*W)$ for one-time setup and $O(K\*W)$ for each query). + +For suffix pattern recognition with $K$ suffix patterns (length $W$) and 1 query pattern (length $N$), using **reverse-traversal prefix tree search** is efficient because it can model common ancestor ordering with reverse encoding (by inserting suffix patterns in reverse order during setup and searching in reverse order during queries) and check the multiple patterns over a single root-to-leaf pass (taking runtime $O(K \cdot W)$ for one-time setup and $O(W)$ for each query). This improves over using direct suffix pattern search which must check the multiple patterns over separate array passes (taking $O(K \cdot W)$ for each query) or using forward-traversal prefix tree search which cannot model common ancestor ordering and must check the multiple patterns over separate root-to-leaf passes (taking runtime $O(K \cdot W)$ for one-time setup and $O(K \cdot W)$ for each query). For batch data (offline scenario), reading the query pattern from a static array (size $N$) with a reverse iterator takes $O(1)$ auxiliary space. For streaming data (online scenario), reading the query pattern from a history array (size $W$) reconstructed from the stream takes $O(W)$ auxiliary space. + ### 📊 Complexity Analysis | Operation | Direct Search (v1) | Forward-traversal (v2) | Reverse-traversal (v3) | Comparison | | :--- | :--- | :--- | :--- | :--- | -| **Initial Setup** | $O(1)$ | $O(K\*W)$ | $O(K\*W)$ | v1 is superior | -| **Batch Queries (N)** | $O(K\*W)$ | $O(K\*W)$ | $O(W)$ | v3 is superior | -| **Streaming Queries (1)** | $O(K\*W)$ | $O(K\*W)$ | $O(W)$ | v3 is superior | -| **Space Complexity** | $O(1)$ | $O(K\*W)$ | $O(K\*W)$ | v1 is superior | +| **Initial Setup** | $O(1)$ | $O(K \cdot W)$ | $O(K \cdot W)$ | v1 is superior | +| **Batch Queries (N)** | $O(K \cdot W)$ | $O(K \cdot W)$ | $O(W)$ | v3 is superior | +| **Streaming Queries (1)** | $O(K \cdot W)$ | $O(K \cdot W)$ | $O(W)$ | v3 is superior | +| **Space Complexity** | $O(1)$ | $O(K \cdot W)$ | $O(K \cdot W)$ | v1 is superior | ### 🚀 Reverse Encoding (Visual) The advantage of reverse-traversal prefix tree search is that it can check multiple suffix patterns at once, ensuring $O(W)$ query time (and is independent of the suffix pattern count $K$ and the query pattern length $N$). This is possible because of reverse encoding. -![Diagram for reverse encoding](static/diagram-image.png) +```mermaid +{% include "modules/suffix_pattern_recognition/static/diagram-mermaid.txt" %} +``` ## 2. Design Approaches & Trade-offs @@ -28,3 +32,7 @@ Although Direct Search (v1) requires ~90% less lines of code, it performs worse ### Python Object-Model Tuning To reduce object-overhead due to the Python object-model, I implemented a **nested hash map** for the reverse-traversal prefix tree, with each "node" using a character for the hash map key and a reference to the next "node" for the hash map value. This approach reduced object lookup during queries. + +## 3. API Reference + +::: data_streaming_accelerators.core.suffix_pattern_recognition diff --git a/docs/suffix_pattern_recognition/static/diagram-mermaid.txt b/docs/modules/suffix_pattern_recognition/static/diagram-mermaid.txt similarity index 100% rename from docs/suffix_pattern_recognition/static/diagram-mermaid.txt rename to docs/modules/suffix_pattern_recognition/static/diagram-mermaid.txt diff --git a/docs/suffix_pattern_recognition/static/diagram-image.png b/docs/suffix_pattern_recognition/static/diagram-image.png deleted file mode 100644 index 49ccdd7..0000000 Binary files a/docs/suffix_pattern_recognition/static/diagram-image.png and /dev/null differ diff --git a/mkdocs.yml b/mkdocs.yml new file mode 100644 index 0000000..2d4243d --- /dev/null +++ b/mkdocs.yml @@ -0,0 +1,48 @@ +site_name: Data Streaming Accelerators +site_url: https://achekery.github.io/data-streaming-accelerators/ + +repo_name: Data Streaming Accelerators +repo_url: https://github.com/achekery/data-streaming-accelerators/ + +theme: + language: en + name: material + features: + - content.code.copy + - content.code.annotate + - navigation.sections + +markdown_extensions: + - pymdownx.superfences: + custom_fences: + - name: mermaid + class: mermaid + format: !!python/name:pymdownx.superfences.fence_code_format + - pymdownx.arithmatex: + generic: true # For your O(log N) LaTeX notations + - pymdownx.snippets: + base_path: docs + +plugins: + - search + - macros: + on_error_fail: true + - mkdocstrings: + handlers: + python: + paths: [src] + options: + show_source: true + show_root_heading: true + show_category_heading: true + +nav: + - Overview: index.md + - Modules: + - Dynamic Interval Management: modules/dynamic_interval_management/README.md + - Dynamic Point Aggregation: modules/dynamic_point_aggregation/README.md + - Suffix Pattern Recognition: modules/suffix_pattern_recognition/README.md + +extra_javascript: + - javascripts/mathjax.js + - 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