In RStudio, using the MSstatsShiny App:
I'm using the following settings:
PTM
TMT
FragPipe
and uploading the msstats file and msstats annotation files generated via philosopher for both PTM and global profiling. And using the presets for pre-processing : STY/0.75/yes remove unlocalized peptides
And it keeps erroring here:
INFO [2024-11-22 13:50:48] ** Finished preprocessing. The dataset is ready to be processed by the proteinSummarization function.
Warning: Error in [<-.data.frame: missing values are not allowed in subscripted assignments of data frames
3: runApp
2: print.shiny.appobj
1:
In RStudio, using the MSstatsShiny App:
I'm using the following settings:
PTM
TMT
FragPipe
and uploading the msstats file and msstats annotation files generated via philosopher for both PTM and global profiling. And using the presets for pre-processing : STY/0.75/yes remove unlocalized peptides
And it keeps erroring here:
INFO [2024-11-22 13:50:48] ** Finished preprocessing. The dataset is ready to be processed by the proteinSummarization function.
Warning: Error in [<-.data.frame: missing values are not allowed in subscripted assignments of data frames
3: runApp
2: print.shiny.appobj
1:
