From 7bfc5569653b0fc4c9e6d584f0d94d92c101ac92 Mon Sep 17 00:00:00 2001 From: jdelguerrero Date: Fri, 10 Jul 2026 17:09:18 +0200 Subject: [PATCH 01/20] [Data Transfer] Expand unmount command for specific Ubuntu case --- docs/data/transfer.md | 1 + 1 file changed, 1 insertion(+) diff --git a/docs/data/transfer.md b/docs/data/transfer.md index 735560570..4be009ca6 100644 --- a/docs/data/transfer.md +++ b/docs/data/transfer.md @@ -292,6 +292,7 @@ When you no longer need the mounted remote directory, you **must** unmount your ``` diskutil umount ~/ulhpc ``` + !!! tip In some APT based systems (e.g. Debian and Ubuntu) the command to unmount the remote directory may be called `fusermount3`. From 29e2bab42a3e063650af988a4c7d2e2448651400 Mon Sep 17 00:00:00 2001 From: jdelguerrero Date: Tue, 21 Jul 2026 17:55:11 +0200 Subject: [PATCH 02/20] [Software] Add script to generate software set information --- docs/software/swsets/stack.md | 1 + mkdocs.yml | 1 + scripts/eb_metadata.py | 78 +++++++++++++++++++++++++++++++++++ 3 files changed, 80 insertions(+) create mode 120000 docs/software/swsets/stack.md create mode 100644 scripts/eb_metadata.py diff --git a/docs/software/swsets/stack.md b/docs/software/swsets/stack.md new file mode 120000 index 000000000..8a7225a53 --- /dev/null +++ b/docs/software/swsets/stack.md @@ -0,0 +1 @@ +/home/jdelguerrero/home_ulhpc/eb_tests/stack.md \ No newline at end of file diff --git a/mkdocs.yml b/mkdocs.yml index 381e586aa..9e465e5d9 100644 --- a/mkdocs.yml +++ b/mkdocs.yml @@ -147,6 +147,7 @@ nav: - Software Sets: - 2019b: 'software/swsets/2019b.md' - 2020a: 'software/swsets/2020b.md' + - Meluxina: 'software/swsets/stack.md' ### END GENERATED CONTENT # - Software Set Versioning: 'software/swsets.md' - Compiling/building your own software: 'software/build.md' diff --git a/scripts/eb_metadata.py b/scripts/eb_metadata.py new file mode 100644 index 000000000..b79aafdbe --- /dev/null +++ b/scripts/eb_metadata.py @@ -0,0 +1,78 @@ +from easybuild.tools.options import set_up_configuration +from easybuild.framework.easyconfig.easyconfig import process_easyconfig +from pathlib import Path +import pandas as pd +import json + +def homepage_link(text, url): + if pd.notna(url) and url: + return f"[{text}]({url})" + return text + +software = Path("/apps/USE/easybuild/release/2025.1/software/") +stack = [] + +options, cfg_settings = set_up_configuration(args=[]) + +# for eb in software.rglob("*.eb"): +# print(eb) + +# try: +# ecs = process_easyconfig(str(eb), validate = False) + +# for ecdict in ecs: +# ec = ecdict["ec"] + +# package = { +# "name": ec["name"], +# "version": ec["version"], +# "homepage": ec["homepage"], +# "description": ec["description"], +# "moduleclass": ec["moduleclass"], +# } + +# stack.append(package) + +# except Exception as excpt: +# print(f"Failed: {eb}: {excpt}") + + +# with open("stack.json", "w") as fp: +# json.dump(stack, fp, indent=2, default=str) + +stack = pd.read_json("stack.json") + +df = pd.DataFrame(stack) + +# Create Markdown hyperlinks +df["software"] = df.apply( + lambda row: homepage_link(row["name"], row["homepage"]), + axis=1, +) + +# Clean descriptions +df["description"] = ( + df["description"] + .fillna("") + .str.replace(r"\s+", " ", regex=True) + .str.strip() +) +#Reorder columns +df = df[ + [ + "software", + "version", + "moduleclass", + "description", + ] +] + +# Sort alphabetically +df = df.sort_values(["software", "version"]) + +# Write Markdown +with open("stack.md", "w") as f: + f.write(df.to_markdown(index=False)) + +# Keep JSON too +#df.to_json("stack.json", orient="records", indent=2) From 80ece5a5369c51dd898b09504377f6dfcf691091 Mon Sep 17 00:00:00 2001 From: jdelguerrero Date: Tue, 21 Jul 2026 18:17:35 +0200 Subject: [PATCH 03/20] [Bugfix] change type of stack.md --- docs/software/swsets/stack.md | 1053 ++++++++++++++++++++++++++++++++- 1 file changed, 1052 insertions(+), 1 deletion(-) mode change 120000 => 100644 docs/software/swsets/stack.md diff --git a/docs/software/swsets/stack.md b/docs/software/swsets/stack.md deleted file mode 120000 index 8a7225a53..000000000 --- a/docs/software/swsets/stack.md +++ /dev/null @@ -1 +0,0 @@ -/home/jdelguerrero/home_ulhpc/eb_tests/stack.md \ No newline at end of file diff --git a/docs/software/swsets/stack.md b/docs/software/swsets/stack.md new file mode 100644 index 000000000..22adf9f6d --- /dev/null +++ b/docs/software/swsets/stack.md @@ -0,0 +1,1052 @@ +| software | version | moduleclass | description | +|:---------------------------------------------------------------------------------------------------------|:---------------|:--------------|:---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------| +| [520nmx](https://docs.lxp.lu) | 20.4 | tools | Custom package for the s10mx fpga board | +| [520nmx](https://docs.lxp.lu) | 20.4 | tools | Custom package for the s10mx fpga board | +| [AMD-uProf](https://developer.amd.com/amd-uprof/) | 5.1.701 | perf | AMD uProf is a performance analysis tool for applications running on Windows, Linux & FreeBSD operating systems. It allows developers to better understand the runtime performance of their application and to identify ways to improve its performance. | +| [AMD-uProf](https://developer.amd.com/amd-uprof/) | 5.1.701 | perf | AMD uProf is a performance analysis tool for applications running on Windows, Linux & FreeBSD operating systems. It allows developers to better understand the runtime performance of their application and to identify ways to improve its performance. | +| [AOCC](https://developer.amd.com/amd-aocc/) | 5.0.0 | compiler | AMD Optimized C/C++ & Fortran compilers (AOCC) based on LLVM 13.0 | +| [AOCC](https://developer.amd.com/amd-aocc/) | 5.0.0 | compiler | AMD Optimized C/C++ & Fortran compilers (AOCC) based on LLVM 13.0 | +| [AOCL-BLAS](https://github.com/amd/blis) | 5.0 | numlib | AOCL-BLAS is AMD's optimized version of BLAS targeted for AMD EPYC and Ryzen CPUs. | +| [AOCL-BLAS](https://github.com/amd/blis) | 5.0 | numlib | AOCL-BLAS is AMD's optimized version of BLAS targeted for AMD EPYC and Ryzen CPUs. | +| [ATK](https://developer.gnome.org/atk/) | 2.38.0 | vis | ATK provides the set of accessibility interfaces that are implemented by other toolkits and applications. Using the ATK interfaces, accessibility tools have full access to view and control running applications. | +| [ATK](https://developer.gnome.org/atk/) | 2.38.0 | vis | ATK provides the set of accessibility interfaces that are implemented by other toolkits and applications. Using the ATK interfaces, accessibility tools have full access to view and control running applications. | +| [Abseil](https://abseil.io/) | 20250512.1 | lib | Abseil is an open-source collection of C++ library code designed to augment the C++ standard library. The Abseil library code is collected from Google's own C++ code base, has been extensively tested and used in production, and is the same code we depend on in our daily coding lives. | +| [Abseil](https://abseil.io/) | 20250512.1 | lib | Abseil is an open-source collection of C++ library code designed to augment the C++ standard library. The Abseil library code is collected from Google's own C++ code base, has been extensively tested and used in production, and is the same code we depend on in our daily coding lives. | +| [AdaptiveCpp](https://github.com/AdaptiveCpp/AdaptiveCpp) | 25.10.0 | devel | AdaptiveCpp is a SYCL and C++ standard parallelism implementation supporting CPUs and multiple GPU backends (CUDA/HIP/etc). | +| [AdaptiveCpp](https://github.com/AdaptiveCpp/AdaptiveCpp) | 25.10.0 | devel | AdaptiveCpp is a SYCL and C++ standard parallelism implementation supporting CPUs and multiple GPU backends (CUDA/HIP/etc). | +| [Advisor](https://software.intel.com/content/www/us/en/develop/tools/oneapi/components/advisor.html) | 2025.0.0 | perf | Vectorization Optimization and Thread Prototyping - Vectorize & thread code or performance “dies” - Easy workflow + data + tips = faster code faster - Prioritize, Prototype & Predict performance gain | +| [Advisor](https://software.intel.com/content/www/us/en/develop/tools/oneapi/components/advisor.html) | 2025.0.0 | perf | Vectorization Optimization and Thread Prototyping - Vectorize & thread code or performance “dies” - Easy workflow + data + tips = faster code faster - Prioritize, Prototype & Predict performance gain | +| [Anaconda3](https://www.anaconda.com) | 2025.06-1 | lang | Built to complement the rich, open source Python community, the Anaconda platform provides an enterprise-ready data analytics platform that empowers companies to adopt a modern open data science analytics architecture. | +| [Anaconda3](https://www.anaconda.com) | 2025.06-1 | lang | Built to complement the rich, open source Python community, the Anaconda platform provides an enterprise-ready data analytics platform that empowers companies to adopt a modern open data science analytics architecture. | +| [Apptainer](https://apptainer.org/docs/admin/main/index.html) | 1.4.2 | tools | Apptainer is an open source container platform designed to be simple, fast, and secure. Many container platforms are available, but Apptainer is designed for ease-of-use on shared systems and in high performance computing (HPC) environments. It features: * An immutable single-file container image format, supporting cryptographic signatures and encryption. * Integration over isolation by default. Easily make use of GPUs, high speed networks, parallel filesystems on a cluster or server. * Mobility of compute. The single file SIF container format is easy to transport and share. * A simple, effective security model. You are the same user inside a container as outside, and cannot gain additional privilege on the host system by default. | +| [Apptainer](https://apptainer.org/docs/admin/main/index.html) | 1.4.2 | tools | Apptainer is an open source container platform designed to be simple, fast, and secure. Many container platforms are available, but Apptainer is designed for ease-of-use on shared systems and in high performance computing (HPC) environments. It features: * An immutable single-file container image format, supporting cryptographic signatures and encryption. * Integration over isolation by default. Easily make use of GPUs, high speed networks, parallel filesystems on a cluster or server. * Mobility of compute. The single file SIF container format is easy to transport and share. * A simple, effective security model. You are the same user inside a container as outside, and cannot gain additional privilege on the host system by default. | +| [Armadillo](https://arma.sourceforge.net/) | 14.6.0 | numlib | Armadillo is an open-source C++ linear algebra library (matrix maths) aiming towards a good balance between speed and ease of use. Integer, floating point and complex numbers are supported, as well as a subset of trigonometric and statistics functions. | +| [Armadillo](https://arma.sourceforge.net/) | 14.6.0 | numlib | Armadillo is an open-source C++ linear algebra library (matrix maths) aiming towards a good balance between speed and ease of use. Integer, floating point and complex numbers are supported, as well as a subset of trigonometric and statistics functions. | +| [Arrow](https://arrow.apache.org) | 22.0.0 | data | Apache Arrow (incl. PyArrow Python bindings), a cross-language development platform for in-memory data. | +| [Arrow](https://arrow.apache.org) | 22.0.0 | data | Apache Arrow (incl. PyArrow Python bindings), a cross-language development platform for in-memory data. | +| [Autoconf](https://www.gnu.org/software/autoconf/) | 2.72 | devel | Autoconf is an extensible package of M4 macros that produce shell scripts to automatically configure software source code packages. These scripts can adapt the packages to many kinds of UNIX-like systems without manual user intervention. Autoconf creates a configuration script for a package from a template file that lists the operating system features that the package can use, in the form of M4 macro calls. | +| [Autoconf](https://www.gnu.org/software/autoconf/) | 2.72 | devel | Autoconf is an extensible package of M4 macros that produce shell scripts to automatically configure software source code packages. These scripts can adapt the packages to many kinds of UNIX-like systems without manual user intervention. Autoconf creates a configuration script for a package from a template file that lists the operating system features that the package can use, in the form of M4 macro calls. | +| [Automake](https://www.gnu.org/software/automake/automake.html) | 1.17 | devel | Automake: GNU Standards-compliant Makefile generator | +| [Automake](https://www.gnu.org/software/automake/automake.html) | 1.17 | devel | Automake: GNU Standards-compliant Makefile generator | +| [Autotools](https://autotools.io) | 20240712 | devel | This bundle collect the standard GNU build tools: Autoconf, Automake and libtool | +| [Autotools](https://autotools.io) | 20240712 | devel | This bundle collect the standard GNU build tools: Autoconf, Automake and libtool | +| [BLIS](https://github.com/flame/blis/) | 1.1 | numlib | BLIS is a portable software framework for instantiating high-performance BLAS-like dense linear algebra libraries. | +| [BLIS](https://github.com/flame/blis/) | 1.1 | numlib | BLIS is a portable software framework for instantiating high-performance BLAS-like dense linear algebra libraries. | +| [BeautifulSoup](https://www.crummy.com/software/BeautifulSoup) | 4.13.4 | data | Beautiful Soup is a Python library designed for quick turnaround projects like screen-scraping. | +| [BeautifulSoup](https://www.crummy.com/software/BeautifulSoup) | 4.13.4 | data | Beautiful Soup is a Python library designed for quick turnaround projects like screen-scraping. | +| [Bison](https://www.gnu.org/software/bison) | 3.8.2 | lang | Bison is a general-purpose parser generator that converts an annotated context-free grammar into a deterministic LR or generalized LR (GLR) parser employing LALR(1) parser tables. | +| [Bison](https://www.gnu.org/software/bison) | 3.8.2 | lang | Bison is a general-purpose parser generator that converts an annotated context-free grammar into a deterministic LR or generalized LR (GLR) parser employing LALR(1) parser tables. | +| [Bison](https://www.gnu.org/software/bison) | 3.8.2 | lang | Bison is a general-purpose parser generator that converts an annotated context-free grammar into a deterministic LR or generalized LR (GLR) parser employing LALR(1) parser tables. | +| [Bison](https://www.gnu.org/software/bison) | 3.8.2 | lang | Bison is a general-purpose parser generator that converts an annotated context-free grammar into a deterministic LR or generalized LR (GLR) parser employing LALR(1) parser tables. | +| [Blender](https://www.blender.org/) | 4.4.0 | vis | Blender is the free and open source 3D creation suite. It supports the entirety of the 3D pipeline-modeling, rigging, animation, simulation, rendering, compositing and motion tracking, even video editing and game creation. | +| [Blender](https://www.blender.org/) | 4.4.0 | vis | Blender is the free and open source 3D creation suite. It supports the entirety of the 3D pipeline-modeling, rigging, animation, simulation, rendering, compositing and motion tracking, even video editing and game creation. | +| [Boost.Python](https://boostorg.github.io/python) | 1.88.0 | lib | Boost.Python is a C++ library which enables seamless interoperability between C++ and the Python programming language. | +| [Boost.Python](https://boostorg.github.io/python) | 1.88.0 | lib | Boost.Python is a C++ library which enables seamless interoperability between C++ and the Python programming language. | +| [Boost](https://www.boost.org/) | 1.88.0 | devel | Boost provides free peer-reviewed portable C++ source libraries. | +| [Boost](https://www.boost.org/) | 1.88.0 | devel | Boost provides free peer-reviewed portable C++ source libraries. | +| [Brotli](https://github.com/google/brotli) | 1.1.0 | lib | Brotli is a generic-purpose lossless compression algorithm that compresses data using a combination of a modern variant of the LZ77 algorithm, Huffman coding and 2nd order context modeling, with a compression ratio comparable to the best currently available general-purpose compression methods. It is similar in speed with deflate but offers more dense compression. The specification of the Brotli Compressed Data Format is defined in RFC 7932. | +| [Brotli](https://github.com/google/brotli) | 1.1.0 | lib | Brotli is a generic-purpose lossless compression algorithm that compresses data using a combination of a modern variant of the LZ77 algorithm, Huffman coding and 2nd order context modeling, with a compression ratio comparable to the best currently available general-purpose compression methods. It is similar in speed with deflate but offers more dense compression. The specification of the Brotli Compressed Data Format is defined in RFC 7932. | +| [Brunsli](https://github.com/google/brunsli/) | 0.1 | lib | Brunsli is a lossless JPEG repacking library. | +| [Brunsli](https://github.com/google/brunsli/) | 0.1 | lib | Brunsli is a lossless JPEG repacking library. | +| [CCCL](https://github.com/NVIDIA/cccl) | 3.1.3 | lib | CUDA C++ Core Libraries (header only) | +| [CCCL](https://github.com/NVIDIA/cccl) | 3.1.3 | lib | CUDA C++ Core Libraries (header only) | +| [CFITSIO](https://heasarc.gsfc.nasa.gov/fitsio/) | 4.6.2 | lib | CFITSIO is a library of C and Fortran subroutines for reading and writing data files in FITS (Flexible Image Transport System) data format. | +| [CFITSIO](https://heasarc.gsfc.nasa.gov/fitsio/) | 4.6.2 | lib | CFITSIO is a library of C and Fortran subroutines for reading and writing data files in FITS (Flexible Image Transport System) data format. | +| [CGAL](https://www.cgal.org/) | 6.0.1 | numlib | The goal of the CGAL Open Source Project is to provide easy access to efficient and reliable geometric algorithms in the form of a C++ library. | +| [CGAL](https://www.cgal.org/) | 6.0.1 | numlib | The goal of the CGAL Open Source Project is to provide easy access to efficient and reliable geometric algorithms in the form of a C++ library. | +| [CMake](https://www.cmake.org) | 3.31.3 | devel | CMake, the cross-platform, open-source build system. CMake is a family of tools designed to build, test and package software. | +| [CMake](https://www.cmake.org) | 3.31.3 | devel | CMake, the cross-platform, open-source build system. CMake is a family of tools designed to build, test and package software. | +| [CP2K](https://www.cp2k.org/) | 2025.2 | chem | CP2K is a freely available (GPL) program, written in Fortran 95, to perform atomistic and molecular simulations of solid state, liquid, molecular and biological systems. It provides a general framework for different methods such as e.g. density functional theory (DFT) using a mixed Gaussian and plane waves approach (GPW), and classical pair and many-body potentials. | +| [CP2K](https://www.cp2k.org/) | 2025.2 | chem | CP2K is a freely available (GPL) program, written in Fortran 95, to perform atomistic and molecular simulations of solid state, liquid, molecular and biological systems. It provides a general framework for different methods such as e.g. density functional theory (DFT) using a mixed Gaussian and plane waves approach (GPW), and classical pair and many-body potentials. | +| [CUDA-Python](https://nvidia.github.io/cuda-python/) | 12.8.0 | lib | Python bindings for CUDA | +| [CUDA-Python](https://nvidia.github.io/cuda-python/) | 12.8.0 | lib | Python bindings for CUDA | +| [CUDA](https://developer.nvidia.com/cuda-toolkit) | 12.8.0 | system | CUDA (formerly Compute Unified Device Architecture) is a parallel computing platform and programming model created by NVIDIA and implemented by the graphics processing units (GPUs) that they produce. CUDA gives developers access to the virtual instruction set and memory of the parallel computational elements in CUDA GPUs. | +| [CUDA](https://developer.nvidia.com/cuda-toolkit) | 12.8.0 | system | CUDA (formerly Compute Unified Device Architecture) is a parallel computing platform and programming model created by NVIDIA and implemented by the graphics processing units (GPUs) that they produce. CUDA gives developers access to the virtual instruction set and memory of the parallel computational elements in CUDA GPUs. | +| [Catch2](https://github.com/catchorg/Catch2) | 2.13.10 | lib | A modern, C++-native, header-only, test framework for unit-tests, TDD and BDD - using C++11, C++14, C++17 and later | +| [Catch2](https://github.com/catchorg/Catch2) | 2.13.10 | lib | A modern, C++-native, header-only, test framework for unit-tests, TDD and BDD - using C++11, C++14, C++17 and later | +| [Cbc](https://github.com/coin-or/Cbc) | 2.10.12 | math | Cbc (Coin-or branch and cut) is an open-source mixed integer linear programming solver written in C++. It can be used as a callable library or using a stand-alone executable. | +| [Cbc](https://github.com/coin-or/Cbc) | 2.10.12 | math | Cbc (Coin-or branch and cut) is an open-source mixed integer linear programming solver written in C++. It can be used as a callable library or using a stand-alone executable. | +| [Cgl](https://github.com/coin-or/Cgl) | 0.60.8 | math | The COIN-OR Cut Generation Library (Cgl) is a collection of cut generators that can be used with other COIN-OR packages that make use of cuts, such as, among others, the linear solver Clp or the mixed integer linear programming solvers Cbc or BCP. Cgl uses the abstract class OsiSolverInterface (see Osi) to use or communicate with a solver. It does not directly call a solver. | +| [Cgl](https://github.com/coin-or/Cgl) | 0.60.8 | math | The COIN-OR Cut Generation Library (Cgl) is a collection of cut generators that can be used with other COIN-OR packages that make use of cuts, such as, among others, the linear solver Clp or the mixed integer linear programming solvers Cbc or BCP. Cgl uses the abstract class OsiSolverInterface (see Osi) to use or communicate with a solver. It does not directly call a solver. | +| [Check](https://libcheck.github.io/check/) | 0.15.2 | lib | Check is a unit testing framework for C. It features a simple interface for defining unit tests, putting little in the way of the developer. Tests are run in a separate address space, so both assertion failures and code errors that cause segmentation faults or other signals can be caught. Test results are reportable in the following: Subunit, TAP, XML, and a generic logging format. | +| [Check](https://libcheck.github.io/check/) | 0.15.2 | lib | Check is a unit testing framework for C. It features a simple interface for defining unit tests, putting little in the way of the developer. Tests are run in a separate address space, so both assertion failures and code errors that cause segmentation faults or other signals can be caught. Test results are reportable in the following: Subunit, TAP, XML, and a generic logging format. | +| [Clp](https://github.com/coin-or/Clp) | 1.17.10 | math | Clp (Coin-or linear programming) is an open-source linear programming solver. It is primarily meant to be used as a callable library, but a basic, stand-alone executable version is also available. | +| [Clp](https://github.com/coin-or/Clp) | 1.17.10 | math | Clp (Coin-or linear programming) is an open-source linear programming solver. It is primarily meant to be used as a callable library, but a basic, stand-alone executable version is also available. | +| [CoinUtils](https://github.com/coin-or/CoinUtils) | 2.11.12 | math | CoinUtils (Coin-OR Utilities) is an open-source collection of classes and functions that are generally useful to more than one COIN-OR project. | +| [CoinUtils](https://github.com/coin-or/CoinUtils) | 2.11.12 | math | CoinUtils (Coin-OR Utilities) is an open-source collection of classes and functions that are generally useful to more than one COIN-OR project. | +| [CubeLib](https://www.scalasca.org/software/cube-4.x/download.html) | 4.9 | perf | Cube, which is used as performance report explorer for Scalasca and Score-P, is a generic tool for displaying a multi-dimensional performance space consisting of the dimensions (i) performance metric, (ii) call path, and (iii) system resource. Each dimension can be represented as a tree, where non-leaf nodes of the tree can be collapsed or expanded to achieve the desired level of granularity. This module provides the Cube general purpose C++ library component and command-line tools. | +| [CubeLib](https://www.scalasca.org/software/cube-4.x/download.html) | 4.9 | perf | Cube, which is used as performance report explorer for Scalasca and Score-P, is a generic tool for displaying a multi-dimensional performance space consisting of the dimensions (i) performance metric, (ii) call path, and (iii) system resource. Each dimension can be represented as a tree, where non-leaf nodes of the tree can be collapsed or expanded to achieve the desired level of granularity. This module provides the Cube general purpose C++ library component and command-line tools. | +| [CubeWriter](https://www.scalasca.org/software/cube-4.x/download.html) | 4.9 | perf | Cube, which is used as performance report explorer for Scalasca and Score-P, is a generic tool for displaying a multi-dimensional performance space consisting of the dimensions (i) performance metric, (ii) call path, and (iii) system resource. Each dimension can be represented as a tree, where non-leaf nodes of the tree can be collapsed or expanded to achieve the desired level of granularity. This module provides the Cube high-performance C writer library component. | +| [CubeWriter](https://www.scalasca.org/software/cube-4.x/download.html) | 4.9 | perf | Cube, which is used as performance report explorer for Scalasca and Score-P, is a generic tool for displaying a multi-dimensional performance space consisting of the dimensions (i) performance metric, (ii) call path, and (iii) system resource. Each dimension can be represented as a tree, where non-leaf nodes of the tree can be collapsed or expanded to achieve the desired level of granularity. This module provides the Cube high-performance C writer library component. | +| [Cython](https://cython.org/) | 3.0.10 | lang | Cython is an optimising static compiler for both the Python programming language and the extended Cython programming language (based on Pyrex). | +| [Cython](https://cython.org/) | 3.0.10 | lang | Cython is an optimising static compiler for both the Python programming language and the extended Cython programming language (based on Pyrex). | +| [Cython](https://cython.org/) | 3.1.1 | lang | Cython is an optimising static compiler for both the Python programming language and the extended Cython programming language (based on Pyrex). | +| [Cython](https://cython.org/) | 3.1.1 | lang | Cython is an optimising static compiler for both the Python programming language and the extended Cython programming language (based on Pyrex). | +| [DBCSR](https://cp2k.github.io/dbcsr/develop/) | 2.8.0 | chem | DBCSR stands for Distributed Blocked Compressed Sparse Row. DBCSR is a library designed to efficiently perform sparse matrix-matrix multiplication, among other operations. | +| [DBCSR](https://cp2k.github.io/dbcsr/develop/) | 2.8.0 | chem | DBCSR stands for Distributed Blocked Compressed Sparse Row. DBCSR is a library designed to efficiently perform sparse matrix-matrix multiplication, among other operations. | +| [DBus](https://dbus.freedesktop.org/) | 1.16.2 | devel | D-Bus is a message bus system, a simple way for applications to talk to one another. In addition to interprocess communication, D-Bus helps coordinate process lifecycle; it makes it simple and reliable to code a "single instance" application or daemon, and to launch applications and daemons on demand when their services are needed. | +| [DBus](https://dbus.freedesktop.org/) | 1.16.2 | devel | D-Bus is a message bus system, a simple way for applications to talk to one another. In addition to interprocess communication, D-Bus helps coordinate process lifecycle; it makes it simple and reliable to code a "single instance" application or daemon, and to launch applications and daemons on demand when their services are needed. | +| [Doxygen](https://www.doxygen.nl) | 1.14.0 | devel | Doxygen is a documentation system for C++, C, Java, Objective-C, Python, IDL (Corba and Microsoft flavors), Fortran, VHDL, PHP, C#, and to some extent D. | +| [Doxygen](https://www.doxygen.nl) | 1.14.0 | devel | Doxygen is a documentation system for C++, C, Java, Objective-C, Python, IDL (Corba and Microsoft flavors), Fortran, VHDL, PHP, C#, and to some extent D. | +| [ELPA](https://elpa.mpcdf.mpg.de/) | 2025.01.002 | math | Eigenvalue SoLvers for Petaflop-Applications. | +| [ELPA](https://elpa.mpcdf.mpg.de/) | 2025.01.002 | math | Eigenvalue SoLvers for Petaflop-Applications. | +| [Eigen](https://eigen.tuxfamily.org) | 3.4.0 | math | Eigen is a C++ template library for linear algebra: matrices, vectors, numerical solvers, and related algorithms. | +| [Eigen](https://eigen.tuxfamily.org) | 3.4.0 | math | Eigen is a C++ template library for linear algebra: matrices, vectors, numerical solvers, and related algorithms. | +| [FFTW.MPI](https://www.fftw.org) | 3.3.10 | numlib | FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) in one or more dimensions, of arbitrary input size, and of both real and complex data. | +| [FFTW.MPI](https://www.fftw.org) | 3.3.10 | numlib | FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) in one or more dimensions, of arbitrary input size, and of both real and complex data. | +| [FFTW](https://www.fftw.org) | 3.3.10 | numlib | FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) in one or more dimensions, of arbitrary input size, and of both real and complex data. | +| [FFTW](https://www.fftw.org) | 3.3.10 | numlib | FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) in one or more dimensions, of arbitrary input size, and of both real and complex data. | +| [FFmpeg](https://www.ffmpeg.org/) | 7.1.1 | vis | A complete, cross-platform solution to record, convert and stream audio and video. | +| [FFmpeg](https://www.ffmpeg.org/) | 7.1.1 | vis | A complete, cross-platform solution to record, convert and stream audio and video. | +| [FLINT](https://www.flintlib.org/) | 3.3.1 | math | FLINT (Fast Library for Number Theory) is a C library in support of computations in number theory. Operations that can be performed include conversions, arithmetic, computing GCDs, factoring, solving linear systems, and evaluating special functions. In addition, FLINT provides various low-level routines for fast arithmetic. FLINT is extensively documented and tested. | +| [FLINT](https://www.flintlib.org/) | 3.3.1 | math | FLINT (Fast Library for Number Theory) is a C library in support of computations in number theory. Operations that can be performed include conversions, arithmetic, computing GCDs, factoring, solving linear systems, and evaluating special functions. In addition, FLINT provides various low-level routines for fast arithmetic. FLINT is extensively documented and tested. | +| [Fiona](https://github.com/Toblerity/Fiona) | 1.10.1 | data | Fiona is designed to be simple and dependable. It focuses on reading and writing data in standard Python IO style and relies upon familiar Python types and protocols such as files, dictionaries, mappings, and iterators instead of classes specific to OGR. Fiona can read and write real-world data using multi-layered GIS formats and zipped virtual file systems and integrates readily with other Python GIS packages such as pyproj, Rtree, and Shapely. | +| [Fiona](https://github.com/Toblerity/Fiona) | 1.10.1 | data | Fiona is designed to be simple and dependable. It focuses on reading and writing data in standard Python IO style and relies upon familiar Python types and protocols such as files, dictionaries, mappings, and iterators instead of classes specific to OGR. Fiona can read and write real-world data using multi-layered GIS formats and zipped virtual file systems and integrates readily with other Python GIS packages such as pyproj, Rtree, and Shapely. | +| [Flask](https://flask.palletsprojects.com/) | 3.1.1 | lib | Flask is a lightweight WSGI web application framework. It is designed to make getting started quick and easy, with the ability to scale up to complex applications. This module includes the Flask extensions: Flask-Cors | +| [Flask](https://flask.palletsprojects.com/) | 3.1.1 | lib | Flask is a lightweight WSGI web application framework. It is designed to make getting started quick and easy, with the ability to scale up to complex applications. This module includes the Flask extensions: Flask-Cors | +| [FlexiBLAS](https://gitlab.mpi-magdeburg.mpg.de/software/flexiblas-release) | 3.4.5 | lib | FlexiBLAS is a wrapper library that enables the exchange of the BLAS and LAPACK implementation used by a program without recompiling or relinking it. | +| [FlexiBLAS](https://gitlab.mpi-magdeburg.mpg.de/software/flexiblas-release) | 3.4.5 | lib | FlexiBLAS is a wrapper library that enables the exchange of the BLAS and LAPACK implementation used by a program without recompiling or relinking it. | +| [FreeImage](http://freeimage.sourceforge.net) | 3.18.0 | vis | FreeImage is an Open Source library project for developers who would like to support popular graphics image formats like PNG, BMP, JPEG, TIFF and others as needed by today's multimedia applications. FreeImage is easy to use, fast, multithreading safe. | +| [FreeImage](http://freeimage.sourceforge.net) | 3.18.0 | vis | FreeImage is an Open Source library project for developers who would like to support popular graphics image formats like PNG, BMP, JPEG, TIFF and others as needed by today's multimedia applications. FreeImage is easy to use, fast, multithreading safe. | +| [FriBidi](https://github.com/fribidi/fribidi) | 1.0.16 | lang | The Free Implementation of the Unicode Bidirectional Algorithm. | +| [FriBidi](https://github.com/fribidi/fribidi) | 1.0.16 | lang | The Free Implementation of the Unicode Bidirectional Algorithm. | +| [GCC](https://gcc.gnu.org/) | 14.2.0 | compiler | The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,...). | +| [GCC](https://gcc.gnu.org/) | 14.2.0 | compiler | The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,...). | +| [GCCcore](https://gcc.gnu.org/) | 14.2.0 | compiler | The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,...). | +| [GCCcore](https://gcc.gnu.org/) | 14.2.0 | compiler | The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,...). | +| [GDAL](https://www.gdal.org) | 3.11.1 | data | GDAL is a translator library for raster geospatial data formats that is released under an X/MIT style Open Source license by the Open Source Geospatial Foundation. As a library, it presents a single abstract data model to the calling application for all supported formats. It also comes with a variety of useful commandline utilities for data translation and processing. | +| [GDAL](https://www.gdal.org) | 3.11.1 | data | GDAL is a translator library for raster geospatial data formats that is released under an X/MIT style Open Source license by the Open Source Geospatial Foundation. As a library, it presents a single abstract data model to the calling application for all supported formats. It also comes with a variety of useful commandline utilities for data translation and processing. | +| [GDB](https://www.gnu.org/software/gdb/gdb.html) | 16.3 | debugger | The GNU Project Debugger | +| [GDB](https://www.gnu.org/software/gdb/gdb.html) | 16.3 | debugger | The GNU Project Debugger | +| [GDRCopy](https://github.com/NVIDIA/gdrcopy) | 2.4.4 | lib | A low-latency GPU memory copy library based on NVIDIA GPUDirect RDMA technology. | +| [GDRCopy](https://github.com/NVIDIA/gdrcopy) | 2.4.4 | lib | A low-latency GPU memory copy library based on NVIDIA GPUDirect RDMA technology. | +| [GEOS](https://trac.osgeo.org/geos) | 3.13.1 | math | GEOS (Geometry Engine - Open Source) is a C++ port of the Java Topology Suite (JTS) | +| [GEOS](https://trac.osgeo.org/geos) | 3.13.1 | math | GEOS (Geometry Engine - Open Source) is a C++ port of the Java Topology Suite (JTS) | +| [GLM](https://github.com/g-truc/glm) | 1.0.1 | lib | OpenGL Mathematics (GLM) is a header only C++ mathematics library for graphics software based on the OpenGL Shading Language (GLSL) specifications. | +| [GLM](https://github.com/g-truc/glm) | 1.0.1 | lib | OpenGL Mathematics (GLM) is a header only C++ mathematics library for graphics software based on the OpenGL Shading Language (GLSL) specifications. | +| [GLPK](https://www.gnu.org/software/glpk/) | 5.0 | tools | The GLPK (GNU Linear Programming Kit) package is intended for solving large-scale linear programming (LP), mixed integer programming (MIP), and other related problems. It is a set of routines written in ANSI C and organized in the form of a callable library. | +| [GLPK](https://www.gnu.org/software/glpk/) | 5.0 | tools | The GLPK (GNU Linear Programming Kit) package is intended for solving large-scale linear programming (LP), mixed integer programming (MIP), and other related problems. It is a set of routines written in ANSI C and organized in the form of a callable library. | +| [GLib](https://www.gtk.org/) | 2.85.1 | vis | GLib is one of the base libraries of the GTK+ project | +| [GLib](https://www.gtk.org/) | 2.85.1 | vis | GLib is one of the base libraries of the GTK+ project | +| [GMP](https://gmplib.org/) | 6.3.0 | math | GMP is a free library for arbitrary precision arithmetic, operating on signed integers, rational numbers, and floating point numbers. | +| [GMP](https://gmplib.org/) | 6.3.0 | math | GMP is a free library for arbitrary precision arithmetic, operating on signed integers, rational numbers, and floating point numbers. | +| [GOTCHA](https://gotcha.readthedocs.io/en/latest/) | 1.0.8 | devel | Gotcha is a library that wraps functions. Tools can use gotcha to install hooks into other libraries, for example putting a wrapper function around libc's malloc. It is similar to LD_PRELOAD, but operates via a programmable API. This enables easy methods of accomplishing tasks like code instrumentation or wholesale replacement of mechanisms in programs without disrupting their source code. | +| [GOTCHA](https://gotcha.readthedocs.io/en/latest/) | 1.0.8 | devel | Gotcha is a library that wraps functions. Tools can use gotcha to install hooks into other libraries, for example putting a wrapper function around libc's malloc. It is similar to LD_PRELOAD, but operates via a programmable API. This enables easy methods of accomplishing tasks like code instrumentation or wholesale replacement of mechanisms in programs without disrupting their source code. | +| [GObject-Introspection](https://gi.readthedocs.io/en/latest/) | 1.84.0 | devel | GObject introspection is a middleware layer between C libraries (using GObject) and language bindings. The C library can be scanned at compile time and generate a metadata file, in addition to the actual native C library. Then at runtime, language bindings can read this metadata and automatically provide bindings to call into the C library. | +| [GObject-Introspection](https://gi.readthedocs.io/en/latest/) | 1.84.0 | devel | GObject introspection is a middleware layer between C libraries (using GObject) and language bindings. The C library can be scanned at compile time and generate a metadata file, in addition to the actual native C library. Then at runtime, language bindings can read this metadata and automatically provide bindings to call into the C library. | +| [GROMACS](https://www.gromacs.org) | 2025.2 | bio | GROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles. This is a GPU enabled build, containing both MPI and threadMPI builds for both single and double precision. It also contains the gmxapi extension for the single precision MPI build next to PLUMED. | +| [GROMACS](https://www.gromacs.org) | 2025.2 | bio | GROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles. This is a GPU enabled build, containing both MPI and threadMPI builds for both single and double precision. It also contains the gmxapi extension for the single precision MPI build next to PLUMED. | +| [GROMACS](https://www.gromacs.org) | 2025.2 | bio | GROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles. This is a CPU only build, containing both MPI and threadMPI binaries for both single and double precision. It also contains the gmxapi extension for the single precision MPI build. | +| [GROMACS](https://www.gromacs.org) | 2025.2 | bio | GROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles. This is a CPU only build, containing both MPI and threadMPI binaries for both single and double precision. It also contains the gmxapi extension for the single precision MPI build. | +| [GSL](https://www.gnu.org/software/gsl/) | 2.8 | numlib | The GNU Scientific Library (GSL) is a numerical library for C and C++ programmers. The library provides a wide range of mathematical routines such as random number generators, special functions and least-squares fitting. | +| [GSL](https://www.gnu.org/software/gsl/) | 2.8 | numlib | The GNU Scientific Library (GSL) is a numerical library for C and C++ programmers. The library provides a wide range of mathematical routines such as random number generators, special functions and least-squares fitting. | +| [GST-plugins-bad](https://gstreamer.freedesktop.org/) | 1.26.6 | vis | GStreamer is a library for constructing graphs of media-handling components. The applications it supports range from simple Ogg/Vorbis playback, audio/video streaming to complex audio (mixing) and video (non-linear editing) processing. | +| [GST-plugins-bad](https://gstreamer.freedesktop.org/) | 1.26.6 | vis | GStreamer is a library for constructing graphs of media-handling components. The applications it supports range from simple Ogg/Vorbis playback, audio/video streaming to complex audio (mixing) and video (non-linear editing) processing. | +| [GST-plugins-base](https://gstreamer.freedesktop.org/) | 1.26.6 | vis | GStreamer is a library for constructing graphs of media-handling components. The applications it supports range from simple Ogg/Vorbis playback, audio/video streaming to complex audio (mixing) and video (non-linear editing) processing. | +| [GST-plugins-base](https://gstreamer.freedesktop.org/) | 1.26.6 | vis | GStreamer is a library for constructing graphs of media-handling components. The applications it supports range from simple Ogg/Vorbis playback, audio/video streaming to complex audio (mixing) and video (non-linear editing) processing. | +| [GStreamer](https://gstreamer.freedesktop.org/) | 1.26.6 | vis | GStreamer is a library for constructing graphs of media-handling components. The applications it supports range from simple Ogg/Vorbis playback, audio/video streaming to complex audio (mixing) and video (non-linear editing) processing. | +| [GStreamer](https://gstreamer.freedesktop.org/) | 1.26.6 | vis | GStreamer is a library for constructing graphs of media-handling components. The applications it supports range from simple Ogg/Vorbis playback, audio/video streaming to complex audio (mixing) and video (non-linear editing) processing. | +| [GTK4](https://docs.gtk.org/gtk4/) | 4.20.2 | vis | GTK+ is the primary library used to construct user interfaces in GNOME. It provides all the user interface controls, or widgets, used in a common graphical application. Its object-oriented API allows you to construct user interfaces without dealing with the low-level details of drawing and device interaction. | +| [GTK4](https://docs.gtk.org/gtk4/) | 4.20.2 | vis | GTK+ is the primary library used to construct user interfaces in GNOME. It provides all the user interface controls, or widgets, used in a common graphical application. Its object-oriented API allows you to construct user interfaces without dealing with the low-level details of drawing and device interaction. | +| [GTS](https://gts.sourceforge.net/) | 0.7.6 | vis | GTS stands for the GNU Triangulated Surface Library. It is an Open Source Free Software Library intended to provide a set of useful functions to deal with 3D surfaces meshed with interconnected triangles. | +| [GTS](https://gts.sourceforge.net/) | 0.7.6 | vis | GTS stands for the GNU Triangulated Surface Library. It is an Open Source Free Software Library intended to provide a set of useful functions to deal with 3D surfaces meshed with interconnected triangles. | +| [Gdk-Pixbuf](https://docs.gtk.org/gdk-pixbuf/) | 2.42.12 | vis | The Gdk Pixbuf is a toolkit for image loading and pixel buffer manipulation. It is used by GTK+ 2 and GTK+ 3 to load and manipulate images. In the past it was distributed as part of GTK+ 2 but it was split off into a separate package in preparation for the change to GTK+ 3. | +| [Gdk-Pixbuf](https://docs.gtk.org/gdk-pixbuf/) | 2.42.12 | vis | The Gdk Pixbuf is a toolkit for image loading and pixel buffer manipulation. It is used by GTK+ 2 and GTK+ 3 to load and manipulate images. In the past it was distributed as part of GTK+ 2 but it was split off into a separate package in preparation for the change to GTK+ 3. | +| [Ghostscript](https://ghostscript.com) | 10.05.1 | tools | Ghostscript is a versatile processor for PostScript data with the ability to render PostScript to different targets. It used to be part of the cups printing stack, but is no longer used for that. | +| [Ghostscript](https://ghostscript.com) | 10.05.1 | tools | Ghostscript is a versatile processor for PostScript data with the ability to render PostScript to different targets. It used to be part of the cups printing stack, but is no longer used for that. | +| [GitPython](https://gitpython.readthedocs.org) | 3.1.45 | lib | GitPython is a python library used to interact with Git repositories | +| [GitPython](https://gitpython.readthedocs.org) | 3.1.45 | lib | GitPython is a python library used to interact with Git repositories | +| [Go](https://www.golang.org) | 1.23.6 | compiler | Go is an open source programming language that makes it easy to build simple, reliable, and efficient software. | +| [Go](https://www.golang.org) | 1.23.6 | compiler | Go is an open source programming language that makes it easy to build simple, reliable, and efficient software. | +| [Graphene](https://ebassi.github.io/graphene/) | 1.10.8 | lib | Graphene is a thin layer of types for graphic libraries | +| [Graphene](https://ebassi.github.io/graphene/) | 1.10.8 | lib | Graphene is a thin layer of types for graphic libraries | +| [Graphviz](https://www.graphviz.org/) | 13.1.2 | vis | Graphviz is open source graph visualization software. Graph visualization is a way of representing structural information as diagrams of abstract graphs and networks. It has important applications in networking, bioinformatics, software engineering, database and web design, machine learning, and in visual interfaces for other technical domains. | +| [Graphviz](https://www.graphviz.org/) | 13.1.2 | vis | Graphviz is open source graph visualization software. Graph visualization is a way of representing structural information as diagrams of abstract graphs and networks. It has important applications in networking, bioinformatics, software engineering, database and web design, machine learning, and in visual interfaces for other technical domains. | +| [Greenlet](https://github.com/python-greenlet/greenlet) | 3.2.3 | devel | The greenlet package is a spin-off of Stackless, a version of CPython that supports micro-threads called "tasklets". Tasklets run pseudo-concurrently (typically in a single or a few OS-level threads) and are synchronized with data exchanges on "channels". A "greenlet", on the other hand, is a still more primitive notion of micro-thread with no implicit scheduling; coroutines, in other words. This is useful when you want to control exactly when your code runs. | +| [Greenlet](https://github.com/python-greenlet/greenlet) | 3.2.3 | devel | The greenlet package is a spin-off of Stackless, a version of CPython that supports micro-threads called "tasklets". Tasklets run pseudo-concurrently (typically in a single or a few OS-level threads) and are synchronized with data exchanges on "channels". A "greenlet", on the other hand, is a still more primitive notion of micro-thread with no implicit scheduling; coroutines, in other words. This is useful when you want to control exactly when your code runs. | +| [HDF5](https://portal.hdfgroup.org/display/support) | 1.14.6 | data | HDF5 is a data model, library, and file format for storing and managing data. It supports an unlimited variety of datatypes, and is designed for flexible and efficient I/O and for high volume and complex data. | +| [HDF5](https://portal.hdfgroup.org/display/support) | 1.14.6 | data | HDF5 is a data model, library, and file format for storing and managing data. It supports an unlimited variety of datatypes, and is designed for flexible and efficient I/O and for high volume and complex data. | +| [HDF5](https://portal.hdfgroup.org/display/support) | 1.14.6 | data | HDF5 is a data model, library, and file format for storing and managing data. It supports an unlimited variety of datatypes, and is designed for flexible and efficient I/O and for high volume and complex data. | +| [HDF5](https://portal.hdfgroup.org/display/support) | 1.14.6 | data | HDF5 is a data model, library, and file format for storing and managing data. It supports an unlimited variety of datatypes, and is designed for flexible and efficient I/O and for high volume and complex data. | +| [HDF](https://support.hdfgroup.org/products/hdf4/) | 4.3.1 | data | HDF (also known as HDF4) is a library and multi-object file format for storing and managing data between machines. | +| [HDF](https://support.hdfgroup.org/products/hdf4/) | 4.3.1 | data | HDF (also known as HDF4) is a library and multi-object file format for storing and managing data between machines. | +| [HPL](https://www.netlib.org/benchmark/hpl/) | 2.3 | tools | HPL is a software package that solves a (random) dense linear system in double precision (64 bits) arithmetic on distributed-memory computers. It can thus be regarded as a portable as well as freely available implementation of the High Performance Computing Linpack Benchmark. | +| [HPL](https://www.netlib.org/benchmark/hpl/) | 2.3 | tools | HPL is a software package that solves a (random) dense linear system in double precision (64 bits) arithmetic on distributed-memory computers. It can thus be regarded as a portable as well as freely available implementation of the High Performance Computing Linpack Benchmark. | +| [HPL](https://www.netlib.org/benchmark/hpl/) | 2.3 | tools | HPL is a software package that solves a (random) dense linear system in double precision (64 bits) arithmetic on distributed-memory computers. It can thus be regarded as a portable as well as freely available implementation of the High Performance Computing Linpack Benchmark. | +| [HPL](https://www.netlib.org/benchmark/hpl/) | 2.3 | tools | HPL is a software package that solves a (random) dense linear system in double precision (64 bits) arithmetic on distributed-memory computers. It can thus be regarded as a portable as well as freely available implementation of the High Performance Computing Linpack Benchmark. | +| [HPX](http://stellar-group.org/libraries/hpx/) | 1.10.0 | math | HPX (High Performance ParalleX) is a general purpose C++ runtime system for parallel and distributed applications of any scale. | +| [HPX](http://stellar-group.org/libraries/hpx/) | 1.10.0 | math | HPX (High Performance ParalleX) is a general purpose C++ runtime system for parallel and distributed applications of any scale. | +| [HTSlib](https://www.htslib.org/) | 1.22.1 | bio | A C library for reading/writing high-throughput sequencing data. This package includes the utilities bgzip and tabix | +| [HTSlib](https://www.htslib.org/) | 1.22.1 | bio | A C library for reading/writing high-throughput sequencing data. This package includes the utilities bgzip and tabix | +| [HarfBuzz](https://www.freedesktop.org/wiki/Software/HarfBuzz) | 11.2.1 | vis | HarfBuzz is an OpenType text shaping engine. | +| [HarfBuzz](https://www.freedesktop.org/wiki/Software/HarfBuzz) | 11.2.1 | vis | HarfBuzz is an OpenType text shaping engine. | +| [HyperQueue](https://it4innovations.github.io/hyperqueue/stable/) | 0.24.0 | tools | HyperQueue is a tool designed to simplify execution of large workflows (task graphs) on HPC clusters. It allows you to execute a large number of tasks in a simple way, without having to manually submit jobs into batch schedulers like Slurm or PBS. You just specify what you want to compute – HyperQueue will automatically ask for computational resources and dynamically load-balance tasks across all allocated nodes and cores. HyperQueue can also work without Slurm/PBS as a general task executor. | +| [HyperQueue](https://it4innovations.github.io/hyperqueue/stable/) | 0.24.0 | tools | HyperQueue is a tool designed to simplify execution of large workflows (task graphs) on HPC clusters. It allows you to execute a large number of tasks in a simple way, without having to manually submit jobs into batch schedulers like Slurm or PBS. You just specify what you want to compute – HyperQueue will automatically ask for computational resources and dynamically load-balance tasks across all allocated nodes and cores. HyperQueue can also work without Slurm/PBS as a general task executor. | +| [Hypre](https://computation.llnl.gov/projects/hypre-scalable-linear-solvers-multigrid-methods) | 2.33.0 | numlib | Hypre is a library for solving large, sparse linear systems of equations on massively parallel computers. The problems of interest arise in the simulation codes being developed at LLNL and elsewhere to study physical phenomena in the defense, environmental, energy, and biological sciences. | +| [Hypre](https://computation.llnl.gov/projects/hypre-scalable-linear-solvers-multigrid-methods) | 2.33.0 | numlib | Hypre is a library for solving large, sparse linear systems of equations on massively parallel computers. The problems of interest arise in the simulation codes being developed at LLNL and elsewhere to study physical phenomena in the defense, environmental, energy, and biological sciences. | +| [ICU](https://icu.unicode.org) | 76.1 | lib | ICU is a mature, widely used set of C/C++ and Java libraries providing Unicode and Globalization support for software applications. | +| [ICU](https://icu.unicode.org) | 76.1 | lib | ICU is a mature, widely used set of C/C++ and Java libraries providing Unicode and Globalization support for software applications. | +| [IJulia](https://github.com/JuliaLang/IJulia.jl) | 1.29.0 | lib | Julia kernel for Jupyter | +| [IJulia](https://github.com/JuliaLang/IJulia.jl) | 1.29.0 | lib | Julia kernel for Jupyter | +| [IPython](https://ipython.org/index.html) | 9.3.0 | tools | IPython provides a rich architecture for interactive computing with: Powerful interactive shells (terminal and Qt-based). A browser-based notebook with support for code, text, mathematical expressions, inline plots and other rich media. Support for interactive data visualization and use of GUI toolkits. Flexible, embeddable interpreters to load into your own projects. Easy to use, high performance tools for parallel computing. | +| [IPython](https://ipython.org/index.html) | 9.3.0 | tools | IPython provides a rich architecture for interactive computing with: Powerful interactive shells (terminal and Qt-based). A browser-based notebook with support for code, text, mathematical expressions, inline plots and other rich media. Support for interactive data visualization and use of GUI toolkits. Flexible, embeddable interpreters to load into your own projects. Easy to use, high performance tools for parallel computing. | +| [IRkernel](https://irkernel.github.io) | 1.3.2 | tools | The R kernel for the 'Jupyter' environment executes R code which the front-end (Jupyter Notebook or other front-ends) submits to the kernel via the network. | +| [IRkernel](https://irkernel.github.io) | 1.3.2 | tools | The R kernel for the 'Jupyter' environment executes R code which the front-end (Jupyter Notebook or other front-ends) submits to the kernel via the network. | +| [ISL](https://libisl.sourceforge.io) | 0.27 | math | isl is a library for manipulating sets and relations of integer points bounded by linear constraints. | +| [ISL](https://libisl.sourceforge.io) | 0.27 | math | isl is a library for manipulating sets and relations of integer points bounded by linear constraints. | +| [Imath](https://imath.readthedocs.io/en/latest/) | 3.1.12 | lib | Imath is a C++ and python library of 2D and 3D vector, matrix, and math operations for computer graphics | +| [Imath](https://imath.readthedocs.io/en/latest/) | 3.1.12 | lib | Imath is a C++ and python library of 2D and 3D vector, matrix, and math operations for computer graphics | +| [Inspector](https://software.intel.com/content/www/us/en/develop/tools/oneapi/components/inspector.html) | 2024.2.0 | tools | Intel Inspector is a dynamic memory and threading error checking tool for users developing serial and parallel applications | +| [Inspector](https://software.intel.com/content/www/us/en/develop/tools/oneapi/components/inspector.html) | 2024.2.0 | tools | Intel Inspector is a dynamic memory and threading error checking tool for users developing serial and parallel applications | +| [JasPer](https://www.ece.uvic.ca/~frodo/jasper/) | 4.2.5 | vis | The JasPer Project is an open-source initiative to provide a free software-based reference implementation of the codec specified in the JPEG-2000 Part-1 standard. | +| [JasPer](https://www.ece.uvic.ca/~frodo/jasper/) | 4.2.5 | vis | The JasPer Project is an open-source initiative to provide a free software-based reference implementation of the codec specified in the JPEG-2000 Part-1 standard. | +| [Java](http://openjdk.java.net) | 11.0.27 | lang | Java Platform, Standard Edition (Java SE) lets you develop and deploy Java applications on desktops and servers. | +| [Java](http://openjdk.java.net) | 11.0.27 | lang | Java Platform, Standard Edition (Java SE) lets you develop and deploy Java applications on desktops and servers. | +| [Java](https://java.com/) | 11 | lang | Java Platform, Standard Edition (Java SE) lets you develop and deploy Java applications on desktops and servers. | +| [Java](https://java.com/) | 11 | lang | Java Platform, Standard Edition (Java SE) lets you develop and deploy Java applications on desktops and servers. | +| [Java](https://java.com/) | 21 | lang | Java Platform, Standard Edition (Java SE) lets you develop and deploy Java applications on desktops and servers. | +| [Java](https://java.com/) | 21 | lang | Java Platform, Standard Edition (Java SE) lets you develop and deploy Java applications on desktops and servers. | +| [Java](https://openjdk.org) | 21.0.7 | lang | Java Platform, Standard Edition (Java SE) lets you develop and deploy Java applications on desktops and servers. | +| [Java](https://openjdk.org) | 21.0.7 | lang | Java Platform, Standard Edition (Java SE) lets you develop and deploy Java applications on desktops and servers. | +| [Java](https://openjdk.org) | 21.0.8 | lang | Java Platform, Standard Edition (Java SE) lets you develop and deploy Java applications on desktops and servers. | +| [Java](https://openjdk.org) | 21.0.8 | lang | Java Platform, Standard Edition (Java SE) lets you develop and deploy Java applications on desktops and servers. | +| [Java](https://openjdk.org) | 23.0.2 | lang | Java Platform, Standard Edition (Java SE) lets you develop and deploy Java applications on desktops and servers. | +| [Java](https://openjdk.org) | 23.0.2 | lang | Java Platform, Standard Edition (Java SE) lets you develop and deploy Java applications on desktops and servers. | +| [JsonCpp](https://open-source-parsers.github.io/jsoncpp-docs/doxygen/index.html) | 1.9.6 | lib | JsonCpp is a C++ library that allows manipulating JSON values, including serialization and deserialization to and from strings. It can also preserve existing comment in unserialization/serialization steps, making it a convenient format to store user input files. | +| [JsonCpp](https://open-source-parsers.github.io/jsoncpp-docs/doxygen/index.html) | 1.9.6 | lib | JsonCpp is a C++ library that allows manipulating JSON values, including serialization and deserialization to and from strings. It can also preserve existing comment in unserialization/serialization steps, making it a convenient format to store user input files. | +| [Judy](http://judy.sourceforge.net/) | 1.0.5 | lib | A C library that implements a dynamic array. | +| [Judy](http://judy.sourceforge.net/) | 1.0.5 | lib | A C library that implements a dynamic array. | +| [Julia](https://julialang.org) | 1.11.3 | lang | Julia is a high-level, high-performance dynamic programming language for numerical computing | +| [Julia](https://julialang.org) | 1.11.3 | lang | Julia is a high-level, high-performance dynamic programming language for numerical computing | +| [Jupyter-bundle](https://jupyter.org/) | 20250702 | tools | This bundle collects a range of Jupyter interfaces (Lab, Notebook and nbclassic), extensions (Jupyter Server Proxy, Jupyter Resource Monitor, Jupyter Lmod) and the JupyterHub. | +| [Jupyter-bundle](https://jupyter.org/) | 20250702 | tools | This bundle collects a range of Jupyter interfaces (Lab, Notebook and nbclassic), extensions (Jupyter Server Proxy, Jupyter Resource Monitor, Jupyter Lmod) and the JupyterHub. | +| [JupyterHub](https://jupyter.org) | 5.3.0 | tools | JupyterHub is a multiuser version of the Jupyter (IPython) notebook designed for centralized deployments in companies, university classrooms and research labs. | +| [JupyterHub](https://jupyter.org) | 5.3.0 | tools | JupyterHub is a multiuser version of the Jupyter (IPython) notebook designed for centralized deployments in companies, university classrooms and research labs. | +| [JupyterLab](https://jupyter.org/) | 4.4.4 | tools | JupyterLab is the next-generation user interface for Project Jupyter offering all the familiar building blocks of the classic Jupyter Notebook (notebook, terminal, text editor, file browser, rich outputs, etc.) in a flexible and powerful user interface. JupyterLab will eventually replace the classic Jupyter Notebook. | +| [JupyterLab](https://jupyter.org/) | 4.4.4 | tools | JupyterLab is the next-generation user interface for Project Jupyter offering all the familiar building blocks of the classic Jupyter Notebook (notebook, terminal, text editor, file browser, rich outputs, etc.) in a flexible and powerful user interface. JupyterLab will eventually replace the classic Jupyter Notebook. | +| [JupyterNotebook](https://jupyter.org/) | 7.4.4 | tools | The Jupyter Notebook is the original web application for creating and sharing computational documents. It offers a simple, streamlined, document-centric experience. | +| [JupyterNotebook](https://jupyter.org/) | 7.4.4 | tools | The Jupyter Notebook is the original web application for creating and sharing computational documents. It offers a simple, streamlined, document-centric experience. | +| [Kokkos](https://kokkos.org) | 4.7.1 | base | Kokkos Core implements a programming model in C++ for writing performance portable applications targeting all major HPC platforms. For that purpose it provides abstractions for both parallel execution of code and data management. Kokkos is designed to target complex node architectures with N-level memory hierarchies and multiple types of execution resources. It currently can use CUDA, HPX, OpenMP and Pthreads as backend programming models with several other backends in development. | +| [Kokkos](https://kokkos.org) | 4.7.1 | base | Kokkos Core implements a programming model in C++ for writing performance portable applications targeting all major HPC platforms. For that purpose it provides abstractions for both parallel execution of code and data management. Kokkos is designed to target complex node architectures with N-level memory hierarchies and multiple types of execution resources. It currently can use CUDA, HPX, OpenMP and Pthreads as backend programming models with several other backends in development. | +| [Kokkos](https://kokkos.org) | 4.7.1 | base | Kokkos Core implements a programming model in C++ for writing performance portable applications targeting all major HPC platforms. For that purpose it provides abstractions for both parallel execution of code and data management. Kokkos is designed to target complex node architectures with N-level memory hierarchies and multiple types of execution resources. It currently can use CUDA, HPX, OpenMP and Pthreads as backend programming models with several other backends in development. | +| [Kokkos](https://kokkos.org) | 4.7.1 | base | Kokkos Core implements a programming model in C++ for writing performance portable applications targeting all major HPC platforms. For that purpose it provides abstractions for both parallel execution of code and data management. Kokkos is designed to target complex node architectures with N-level memory hierarchies and multiple types of execution resources. It currently can use CUDA, HPX, OpenMP and Pthreads as backend programming models with several other backends in development. | +| [LAME](http://lame.sourceforge.net/) | 3.100 | data | LAME is a high quality MPEG Audio Layer III (MP3) encoder licensed under the LGPL. | +| [LAME](http://lame.sourceforge.net/) | 3.100 | data | LAME is a high quality MPEG Audio Layer III (MP3) encoder licensed under the LGPL. | +| [LERC](https://github.com/Esri/lerc) | 4.0.0 | lib | LERC is an open-source image or raster format which supports rapid encoding and decoding for any pixel type (not just RGB or Byte). Users set the maximum compression error per pixel while encoding, so the precision of the original input image is preserved (within user defined error bounds). | +| [LERC](https://github.com/Esri/lerc) | 4.0.0 | lib | LERC is an open-source image or raster format which supports rapid encoding and decoding for any pixel type (not just RGB or Byte). Users set the maximum compression error per pixel while encoding, so the precision of the original input image is preserved (within user defined error bounds). | +| [LLVM](https://llvm.org/) | 20.1.7 | compiler | The LLVM Core libraries provide a modern source- and target-independent optimizer, along with code generation support for many popular CPUs (as well as some less common ones!) These libraries are built around a well specified code representation known as the LLVM intermediate representation ("LLVM IR"). The LLVM Core libraries are well documented, and it is particularly easy to invent your own language (or port an existing compiler) to use LLVM as an optimizer and code generator. | +| [LLVM](https://llvm.org/) | 20.1.7 | compiler | The LLVM Core libraries provide a modern source- and target-independent optimizer, along with code generation support for many popular CPUs (as well as some less common ones!) These libraries are built around a well specified code representation known as the LLVM intermediate representation ("LLVM IR"). The LLVM Core libraries are well documented, and it is particularly easy to invent your own language (or port an existing compiler) to use LLVM as an optimizer and code generator. | +| [LZO](https://www.oberhumer.com/opensource/lzo/) | 2.10 | devel | Portable lossless data compression library | +| [LZO](https://www.oberhumer.com/opensource/lzo/) | 2.10 | devel | Portable lossless data compression library | +| [LibRaw](https://www.libraw.org/) | 0.21.4 | vis | The LibRaw library provides a simple and unified interface for extracting out of RAW files generated by digital photo cameras the following: - RAW data (pixel values) - Metadata necessary for processing RAW (geometry, CFA / Bayer pattern, black level, white balance, etc.) - Embedded preview / thumbnail. | +| [LibRaw](https://www.libraw.org/) | 0.21.4 | vis | The LibRaw library provides a simple and unified interface for extracting out of RAW files generated by digital photo cameras the following: - RAW data (pixel values) - Metadata necessary for processing RAW (geometry, CFA / Bayer pattern, black level, white balance, etc.) - Embedded preview / thumbnail. | +| [LibTIFF](https://libtiff.gitlab.io/libtiff/) | 4.7.0 | lib | tiff: Library and tools for reading and writing TIFF data files | +| [LibTIFF](https://libtiff.gitlab.io/libtiff/) | 4.7.0 | lib | tiff: Library and tools for reading and writing TIFF data files | +| [Libint](https://github.com/evaleev/libint) | 2.11.1 | chem | Libint library is used to evaluate the traditional (electron repulsion) and certain novel two-body matrix elements (integrals) over Cartesian Gaussian functions used in modern atomic and molecular theory. | +| [Libint](https://github.com/evaleev/libint) | 2.11.1 | chem | Libint library is used to evaluate the traditional (electron repulsion) and certain novel two-body matrix elements (integrals) over Cartesian Gaussian functions used in modern atomic and molecular theory. | +| [LightGBM](https://lightgbm.readthedocs.io) | 4.6.0 | ai | A fast, distributed, high performance gradient boosting (GBT, GBDT, GBRT, GBM or MART) framework based on decision tree algorithms, used for ranking, classification and many other machine learning tasks. | +| [LightGBM](https://lightgbm.readthedocs.io) | 4.6.0 | ai | A fast, distributed, high performance gradient boosting (GBT, GBDT, GBRT, GBM or MART) framework based on decision tree algorithms, used for ranking, classification and many other machine learning tasks. | +| [Linaro-Forge](https://www.linaroforge.com/) | 25.1 | tools | Build reliable and optimized code for the right results on multiple Server and HPC architectures, from the latest compilers and C++ standards to Intel, 64-bit Arm, AMD, OpenPOWER and Nvidia GPU hardware. Linaro Forge combines Linaro DDT, the leading debugger for time-saving high performance application debugging, Linaro MAP, the trusted performance profiler for invaluable optimization advice across native and Python HPC codes, and Linaro Performance Reports for advanced reporting capabilities. Linaro DDT and Linaro MAP are also available as standalone products. | +| [Linaro-Forge](https://www.linaroforge.com/) | 25.1 | tools | Build reliable and optimized code for the right results on multiple Server and HPC architectures, from the latest compilers and C++ standards to Intel, 64-bit Arm, AMD, OpenPOWER and Nvidia GPU hardware. Linaro Forge combines Linaro DDT, the leading debugger for time-saving high performance application debugging, Linaro MAP, the trusted performance profiler for invaluable optimization advice across native and Python HPC codes, and Linaro Performance Reports for advanced reporting capabilities. Linaro DDT and Linaro MAP are also available as standalone products. | +| [LittleCMS](https://www.littlecms.com/) | 2.17 | vis | Little CMS intends to be an OPEN SOURCE small-footprint color management engine, with special focus on accuracy and performance. | +| [LittleCMS](https://www.littlecms.com/) | 2.17 | vis | Little CMS intends to be an OPEN SOURCE small-footprint color management engine, with special focus on accuracy and performance. | +| [Lua](https://www.lua.org/) | 5.4.8 | lang | Lua is a powerful, fast, lightweight, embeddable scripting language. Lua combines simple procedural syntax with powerful data description constructs based on associative arrays and extensible semantics. Lua is dynamically typed, runs by interpreting bytecode for a register-based virtual machine, and has automatic memory management with incremental garbage collection, making it ideal for configuration, scripting, and rapid prototyping. | +| [Lua](https://www.lua.org/) | 5.4.8 | lang | Lua is a powerful, fast, lightweight, embeddable scripting language. Lua combines simple procedural syntax with powerful data description constructs based on associative arrays and extensible semantics. Lua is dynamically typed, runs by interpreting bytecode for a register-based virtual machine, and has automatic memory management with incremental garbage collection, making it ideal for configuration, scripting, and rapid prototyping. | +| [M4](https://www.gnu.org/software/m4/m4.html) | 1.4.19 | devel | GNU M4 is an implementation of the traditional Unix macro processor. It is mostly SVR4 compatible although it has some extensions (for example, handling more than 9 positional parameters to macros). GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, etc. | +| [M4](https://www.gnu.org/software/m4/m4.html) | 1.4.19 | devel | GNU M4 is an implementation of the traditional Unix macro processor. It is mostly SVR4 compatible although it has some extensions (for example, handling more than 9 positional parameters to macros). GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, etc. | +| [M4](https://www.gnu.org/software/m4/m4.html) | 1.4.19 | devel | GNU M4 is an implementation of the traditional Unix macro processor. It is mostly SVR4 compatible although it has some extensions (for example, handling more than 9 positional parameters to macros). GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, etc. | +| [M4](https://www.gnu.org/software/m4/m4.html) | 1.4.19 | devel | GNU M4 is an implementation of the traditional Unix macro processor. It is mostly SVR4 compatible although it has some extensions (for example, handling more than 9 positional parameters to macros). GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, etc. | +| [MAQAO](https://maqao.org) | 2025.1.0 | perf | MAQAO (Modular Assembly Quality Analyzer and Optimizer) is a performance analysis and optimization framework operating at binary level with a focus on core performance. Its main goal of is to guide application developers along the optimization process through synthetic reports and hints. MAQAO mixes both dynamic and static analyses based on its ability to reconstruct high level structures such as functions and loops from an application binary. Since MAQAO operates at binary level, it is agnostic with regard to the language used in the source code and does not require recompiling the application to perform analyses. | +| [MAQAO](https://maqao.org) | 2025.1.0 | perf | MAQAO (Modular Assembly Quality Analyzer and Optimizer) is a performance analysis and optimization framework operating at binary level with a focus on core performance. Its main goal of is to guide application developers along the optimization process through synthetic reports and hints. MAQAO mixes both dynamic and static analyses based on its ability to reconstruct high level structures such as functions and loops from an application binary. Since MAQAO operates at binary level, it is agnostic with regard to the language used in the source code and does not require recompiling the application to perform analyses. | +| [MCR](https://www.mathworks.com/products/compiler/mcr/) | R2024b | math | The MATLAB Runtime is a standalone set of shared libraries that enables the execution of compiled MATLAB applications or components on computers that do not have MATLAB installed. | +| [MCR](https://www.mathworks.com/products/compiler/mcr/) | R2024b | math | The MATLAB Runtime is a standalone set of shared libraries that enables the execution of compiled MATLAB applications or components on computers that do not have MATLAB installed. | +| [METIS](https://karypis.github.io/glaros/projects/gp.html) | 5.1.0 | math | METIS is a set of serial programs for partitioning graphs, partitioning finite element meshes, and producing fill reducing orderings for sparse matrices. The algorithms implemented in METIS are based on the multilevel recursive-bisection, multilevel k-way, and multi-constraint partitioning schemes. | +| [METIS](https://karypis.github.io/glaros/projects/gp.html) | 5.1.0 | math | METIS is a set of serial programs for partitioning graphs, partitioning finite element meshes, and producing fill reducing orderings for sparse matrices. The algorithms implemented in METIS are based on the multilevel recursive-bisection, multilevel k-way, and multi-constraint partitioning schemes. | +| [MLflow](https://mlflow.org) | 3.1.1 | tools | MLflow is a platform to streamline machine learning development, including tracking experiments, packaging code into reproducible runs, and sharing and deploying models. | +| [MLflow](https://mlflow.org) | 3.1.1 | tools | MLflow is a platform to streamline machine learning development, including tracking experiments, packaging code into reproducible runs, and sharing and deploying models. | +| [MPC](http://www.multiprecision.org/) | 1.3.1 | math | Gnu Mpc is a C library for the arithmetic of complex numbers with arbitrarily high precision and correct rounding of the result. It extends the principles of the IEEE-754 standard for fixed precision real floating point numbers to complex numbers, providing well-defined semantics for every operation. At the same time, speed of operation at high precision is a major design goal. | +| [MPC](http://www.multiprecision.org/) | 1.3.1 | math | Gnu Mpc is a C library for the arithmetic of complex numbers with arbitrarily high precision and correct rounding of the result. It extends the principles of the IEEE-754 standard for fixed precision real floating point numbers to complex numbers, providing well-defined semantics for every operation. At the same time, speed of operation at high precision is a major design goal. | +| [MPFR](https://www.mpfr.org) | 4.2.2 | math | The MPFR library is a C library for multiple-precision floating-point computations with correct rounding. | +| [MPFR](https://www.mpfr.org) | 4.2.2 | math | The MPFR library is a C library for multiple-precision floating-point computations with correct rounding. | +| [MPICH](https://www.mpich.org/) | 4.3.0 | mpi | MPICH is a high-performance and widely portable implementation of the Message Passing Interface (MPI) standard (MPI-1, MPI-2 and MPI-3). | +| [MPICH](https://www.mpich.org/) | 4.3.0 | mpi | MPICH is a high-performance and widely portable implementation of the Message Passing Interface (MPI) standard (MPI-1, MPI-2 and MPI-3). | +| [MUMPS](https://mumps-solver.org) | 5.8.1 | math | A parallel sparse direct solver | +| [MUMPS](https://mumps-solver.org) | 5.8.1 | math | A parallel sparse direct solver | +| [Mako](https://www.makotemplates.org) | 1.3.10 | devel | A super-fast templating language that borrows the best ideas from the existing templating languages | +| [Mako](https://www.makotemplates.org) | 1.3.10 | devel | A super-fast templating language that borrows the best ideas from the existing templating languages | +| [MariaDB](https://mariadb.org/) | 11.8.3 | data | MariaDB is an enhanced, drop-in replacement for MySQL. Included engines: myISAM, Aria, InnoDB, RocksDB, TokuDB, OQGraph, Mroonga. | +| [MariaDB](https://mariadb.org/) | 11.8.3 | data | MariaDB is an enhanced, drop-in replacement for MySQL. Included engines: myISAM, Aria, InnoDB, RocksDB, TokuDB, OQGraph, Mroonga. | +| [Mesa](https://www.mesa3d.org/) | 25.1.3 | vis | Mesa is an open-source implementation of the OpenGL specification - a system for rendering interactive 3D graphics. | +| [Mesa](https://www.mesa3d.org/) | 25.1.3 | vis | Mesa is an open-source implementation of the OpenGL specification - a system for rendering interactive 3D graphics. | +| [Meson](https://mesonbuild.com) | 1.6.1 | tools | Meson is a cross-platform build system designed to be both as fast and as user friendly as possible. | +| [Meson](https://mesonbuild.com) | 1.6.1 | tools | Meson is a cross-platform build system designed to be both as fast and as user friendly as possible. | +| [Miniconda3](https://docs.conda.io/en/latest/miniconda.html) | 25.7.0-2 | lang | Miniconda is a free minimal installer for conda. It is a small, bootstrap version of Anaconda that includes only conda, Python, the packages they depend on, and a small number of other useful packages. | +| [Miniconda3](https://docs.conda.io/en/latest/miniconda.html) | 25.7.0-2 | lang | Miniconda is a free minimal installer for conda. It is a small, bootstrap version of Anaconda that includes only conda, Python, the packages they depend on, and a small number of other useful packages. | +| [NAMD](https://www.ks.uiuc.edu/Research/namd/) | 3.0.2 | chem | NAMD is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems. | +| [NAMD](https://www.ks.uiuc.edu/Research/namd/) | 3.0.2 | chem | NAMD is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems. | +| [NAMD](https://www.ks.uiuc.edu/Research/namd/) | 3.0.2 | chem | NAMD is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems. | +| [NAMD](https://www.ks.uiuc.edu/Research/namd/) | 3.0.2 | chem | NAMD is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems. | +| [NASM](https://www.nasm.us/) | 2.16.03 | lang | NASM: General-purpose x86 assembler | +| [NASM](https://www.nasm.us/) | 2.16.03 | lang | NASM: General-purpose x86 assembler | +| [NCCL](https://developer.nvidia.com/nccl) | 2.26.6 | lib | The NVIDIA Collective Communications Library (NCCL) implements multi-GPU and multi-node collective communication primitives that are performance optimized for NVIDIA GPUs. | +| [NLopt](https://nlopt.readthedocs.io/en/latest/) | 2.10.0 | numlib | NLopt is a free/open-source library for nonlinear optimization, providing a common interface for a number of different free optimization routines available online as well as original implementations of various other algorithms. | +| [NLopt](https://nlopt.readthedocs.io/en/latest/) | 2.10.0 | numlib | NLopt is a free/open-source library for nonlinear optimization, providing a common interface for a number of different free optimization routines available online as well as original implementations of various other algorithms. | +| [NSPR](https://developer.mozilla.org/en-US/docs/Mozilla/Projects/NSPR) | 4.36 | lib | Netscape Portable Runtime (NSPR) provides a platform-neutral API for system level and libc-like functions. | +| [NSPR](https://developer.mozilla.org/en-US/docs/Mozilla/Projects/NSPR) | 4.36 | lib | Netscape Portable Runtime (NSPR) provides a platform-neutral API for system level and libc-like functions. | +| [NSS](https://developer.mozilla.org/en-US/docs/Mozilla/Projects/NSS) | 3.113 | lib | Network Security Services (NSS) is a set of libraries designed to support cross-platform development of security-enabled client and server applications. | +| [NSS](https://developer.mozilla.org/en-US/docs/Mozilla/Projects/NSS) | 3.113 | lib | Network Security Services (NSS) is a set of libraries designed to support cross-platform development of security-enabled client and server applications. | +| [NTL](https://shoup.net/ntl/) | 11.5.1 | math | NTL is a high-performance, portable C++ library providing data structures and algorithms for manipulating signed, arbitrary length integers, and for vectors, matrices, and polynomials over the integers and over finite fields. | +| [NTL](https://shoup.net/ntl/) | 11.5.1 | math | NTL is a high-performance, portable C++ library providing data structures and algorithms for manipulating signed, arbitrary length integers, and for vectors, matrices, and polynomials over the integers and over finite fields. | +| [NVHPC](https://developer.nvidia.com/hpc-sdk/) | 25.3 | compiler | C, C++ and Fortran compilers included with the NVIDIA HPC SDK (previously: PGI) | +| [NVHPC](https://developer.nvidia.com/hpc-sdk/) | 25.3 | compiler | C, C++ and Fortran compilers included with the NVIDIA HPC SDK (previously: PGI) | +| [NVSHMEM](https://developer.nvidia.com/nvshmem) | 3.4.5 | devel | NVSHMEM is a parallel programming interface based on OpenSHMEM that provides efficient and scalable communication for NVIDIA GPU clusters. NVSHMEM creates a global address space for data that spans the memory of multiple GPUs and can be accessed with fine-grained GPU-initiated operations, CPU-initiated operations, and operations on CUDA streams. | +| [NVSHMEM](https://developer.nvidia.com/nvshmem) | 3.4.5 | devel | NVSHMEM is a parallel programming interface based on OpenSHMEM that provides efficient and scalable communication for NVIDIA GPU clusters. NVSHMEM creates a global address space for data that spans the memory of multiple GPUs and can be accessed with fine-grained GPU-initiated operations, CPU-initiated operations, and operations on CUDA streams. | +| [Nextflow](https://www.nextflow.io/) | 25.04.6 | tools | Nextflow is a reactive workflow framework and a programming DSL that eases writing computational pipelines with complex data | +| [Nextflow](https://www.nextflow.io/) | 25.04.6 | tools | Nextflow is a reactive workflow framework and a programming DSL that eases writing computational pipelines with complex data | +| [Nextflow](https://www.nextflow.io/) | 25.04.8 | tools | Nextflow is a reactive workflow framework and a programming DSL that eases writing computational pipelines with complex data | +| [Nextflow](https://www.nextflow.io/) | 25.04.8 | tools | Nextflow is a reactive workflow framework and a programming DSL that eases writing computational pipelines with complex data | +| [Nextflow](https://www.nextflow.io/) | 25.10.0 | tools | Nextflow is a reactive workflow framework and a programming DSL that eases writing computational pipelines with complex data | +| [Nextflow](https://www.nextflow.io/) | 25.10.0 | tools | Nextflow is a reactive workflow framework and a programming DSL that eases writing computational pipelines with complex data | +| [Ninja](https://ninja-build.org/) | 1.12.1 | tools | Ninja is a small build system with a focus on speed. | +| [Ninja](https://ninja-build.org/) | 1.12.1 | tools | Ninja is a small build system with a focus on speed. | +| [Nsight-Compute](https://developer.nvidia.com/nsight-compute) | 2025.2.0 | tools | NVIDIA Nsight Compute is an interactive kernel profiler for CUDA applications | +| [Nsight-Compute](https://developer.nvidia.com/nsight-compute) | 2025.2.0 | tools | NVIDIA Nsight Compute is an interactive kernel profiler for CUDA applications | +| [Nsight-Systems](https://developer.nvidia.com/nsight-systems) | 2025.3.1 | tools | NVIDIA® Nsight™ Systems is a system-wide performance analysis tool designed to visualize an application’s algorithm, help you select the largest opportunities to optimize, and tune to scale efficiently across any quantity of CPUs and GPUs in your computer; from laptops to DGX servers. | +| [Nsight-Systems](https://developer.nvidia.com/nsight-systems) | 2025.3.1 | tools | NVIDIA® Nsight™ Systems is a system-wide performance analysis tool designed to visualize an application’s algorithm, help you select the largest opportunities to optimize, and tune to scale efficiently across any quantity of CPUs and GPUs in your computer; from laptops to DGX servers. | +| [OPARI2](https://www.score-p.org) | 2.0.9 | perf | OPARI2, the successor of Forschungszentrum Juelich's OPARI, is a source-to-source instrumentation tool for OpenMP and hybrid codes. It surrounds OpenMP directives and runtime library calls with calls to the POMP2 measurement interface. | +| [OPARI2](https://www.score-p.org) | 2.0.9 | perf | OPARI2, the successor of Forschungszentrum Juelich's OPARI, is a source-to-source instrumentation tool for OpenMP and hybrid codes. It surrounds OpenMP directives and runtime library calls with calls to the POMP2 measurement interface. | +| [ORCA](https://orcaforum.kofo.mpg.de) | 6.0.0 | chem | ORCA is a flexible, efficient and easy-to-use general purpose tool for quantum chemistry with specific emphasis on spectroscopic properties of open-shell molecules. It features a wide variety of standard quantum chemical methods ranging from semiempirical methods to DFT to single- and multireference correlated ab initio methods. It can also treat environmental and relativistic effects. | +| [ORCA](https://orcaforum.kofo.mpg.de) | 6.0.0 | chem | ORCA is a flexible, efficient and easy-to-use general purpose tool for quantum chemistry with specific emphasis on spectroscopic properties of open-shell molecules. It features a wide variety of standard quantum chemical methods ranging from semiempirical methods to DFT to single- and multireference correlated ab initio methods. It can also treat environmental and relativistic effects. | +| [OSPRay](https://www.ospray.org) | 2.12.0 | vis | Open, Scalable, and Portable Ray Tracing Engine | +| [OSPRay](https://www.ospray.org) | 2.12.0 | vis | Open, Scalable, and Portable Ray Tracing Engine | +| [OSU-Micro-Benchmarks](https://mvapich.cse.ohio-state.edu/benchmarks/) | 7.5 | perf | OSU Micro-Benchmarks | +| [OSU-Micro-Benchmarks](https://mvapich.cse.ohio-state.edu/benchmarks/) | 7.5 | perf | OSU Micro-Benchmarks | +| [OSU-Micro-Benchmarks](https://mvapich.cse.ohio-state.edu/benchmarks/) | 7.5 | perf | OSU Micro-Benchmarks | +| [OSU-Micro-Benchmarks](https://mvapich.cse.ohio-state.edu/benchmarks/) | 7.5 | perf | OSU Micro-Benchmarks | +| [OSU-Micro-Benchmarks](https://mvapich.cse.ohio-state.edu/benchmarks/) | 7.5 | perf | OSU Micro-Benchmarks | +| [OSU-Micro-Benchmarks](https://mvapich.cse.ohio-state.edu/benchmarks/) | 7.5 | perf | OSU Micro-Benchmarks | +| [OTF2](https://www.score-p.org) | 3.1.1 | perf | The Open Trace Format 2 is a highly scalable, memory efficient event trace data format plus support library. It is the new standard trace format for Scalasca, Vampir, and TAU and is open for other tools. | +| [OTF2](https://www.score-p.org) | 3.1.1 | perf | The Open Trace Format 2 is a highly scalable, memory efficient event trace data format plus support library. It is the new standard trace format for Scalasca, Vampir, and TAU and is open for other tools. | +| [OpenBLAS](https://www.openblas.net/) | 0.3.29 | numlib | OpenBLAS is an optimized BLAS library based on GotoBLAS2 1.13 BSD version. | +| [OpenBLAS](https://www.openblas.net/) | 0.3.29 | numlib | OpenBLAS is an optimized BLAS library based on GotoBLAS2 1.13 BSD version. | +| [OpenCV](https://opencv.org/) | 4.12.0 | vis | OpenCV (Open Source Computer Vision Library) is an open source computer vision and machine learning software library. OpenCV was built to provide a common infrastructure for computer vision applications and to accelerate the use of machine perception in the commercial products. Includes extra modules for OpenCV from the contrib repository. | +| [OpenCV](https://opencv.org/) | 4.12.0 | vis | OpenCV (Open Source Computer Vision Library) is an open source computer vision and machine learning software library. OpenCV was built to provide a common infrastructure for computer vision applications and to accelerate the use of machine perception in the commercial products. Includes extra modules for OpenCV from the contrib repository. | +| [OpenCV](https://opencv.org/) | 4.12.0 | vis | OpenCV (Open Source Computer Vision Library) is an open source computer vision and machine learning software library. OpenCV was built to provide a common infrastructure for computer vision applications and to accelerate the use of machine perception in the commercial products. Includes extra modules for OpenCV from the contrib repository. | +| [OpenCV](https://opencv.org/) | 4.12.0 | vis | OpenCV (Open Source Computer Vision Library) is an open source computer vision and machine learning software library. OpenCV was built to provide a common infrastructure for computer vision applications and to accelerate the use of machine perception in the commercial products. Includes extra modules for OpenCV from the contrib repository. | +| [OpenEXR](https://www.openexr.com/) | 3.3.4 | vis | OpenEXR is a high dynamic-range (HDR) image file format developed by Industrial Light & Magic for use in computer imaging applications | +| [OpenEXR](https://www.openexr.com/) | 3.3.4 | vis | OpenEXR is a high dynamic-range (HDR) image file format developed by Industrial Light & Magic for use in computer imaging applications | +| [OpenFOAM](https://www.openfoam.org/) | 13 | cae | OpenFOAM is a free, open source CFD software package. OpenFOAM has an extensive range of features to solve anything from complex fluid flows involving chemical reactions, turbulence and heat transfer, to solid dynamics and electromagnetics. | +| [OpenFOAM](https://www.openfoam.org/) | 13 | cae | OpenFOAM is a free, open source CFD software package. OpenFOAM has an extensive range of features to solve anything from complex fluid flows involving chemical reactions, turbulence and heat transfer, to solid dynamics and electromagnetics. | +| [OpenJPEG](https://www.openjpeg.org/) | 2.5.3 | lib | OpenJPEG is an open-source JPEG 2000 codec written in C language. It has been developed in order to promote the use of JPEG 2000, a still-image compression standard from the Joint Photographic Experts Group (JPEG). Since may 2015, it is officially recognized by ISO/IEC and ITU-T as a JPEG 2000 Reference Software. | +| [OpenJPEG](https://www.openjpeg.org/) | 2.5.3 | lib | OpenJPEG is an open-source JPEG 2000 codec written in C language. It has been developed in order to promote the use of JPEG 2000, a still-image compression standard from the Joint Photographic Experts Group (JPEG). Since may 2015, it is officially recognized by ISO/IEC and ITU-T as a JPEG 2000 Reference Software. | +| [OpenMPI](https://www.open-mpi.org/) | 5.0.7 | mpi | The Open MPI Project is an open source MPI-3 implementation. | +| [OpenMPI](https://www.open-mpi.org/) | 5.0.7 | mpi | The Open MPI Project is an open source MPI-3 implementation. | +| [OpenMPI](https://www.open-mpi.org/) | 5.0.7 | mpi | The Open MPI Project is an open source MPI-3 implementation. | +| [OpenMPI](https://www.open-mpi.org/) | 5.0.7 | mpi | The Open MPI Project is an open source MPI-3 implementation. | +| [OpenPGM](https://code.google.com/p/openpgm/) | 5.2.122 | system | OpenPGM is an open source implementation of the Pragmatic General Multicast (PGM) specification in RFC 3208 available at www.ietf.org. PGM is a reliable and scalable multicast protocol that enables receivers to detect loss, request retransmission of lost data, or notify an application of unrecoverable loss. PGM is a receiver-reliable protocol, which means the receiver is responsible for ensuring all data is received, absolving the sender of reception responsibility. | +| [OpenPGM](https://code.google.com/p/openpgm/) | 5.2.122 | system | OpenPGM is an open source implementation of the Pragmatic General Multicast (PGM) specification in RFC 3208 available at www.ietf.org. PGM is a reliable and scalable multicast protocol that enables receivers to detect loss, request retransmission of lost data, or notify an application of unrecoverable loss. PGM is a receiver-reliable protocol, which means the receiver is responsible for ensuring all data is received, absolving the sender of reception responsibility. | +| [OpenSSL](https://www.openssl.org/) | 3 | system | The OpenSSL Project is a collaborative effort to develop a robust, commercial-grade, full-featured, and Open Source toolchain implementing the Secure Sockets Layer (SSL v2/v3) and Transport Layer Security (TLS v1) protocols as well as a full-strength general purpose cryptography library. | +| [OpenSSL](https://www.openssl.org/) | 3 | system | The OpenSSL Project is a collaborative effort to develop a robust, commercial-grade, full-featured, and Open Source toolchain implementing the Secure Sockets Layer (SSL v2/v3) and Transport Layer Security (TLS v1) protocols as well as a full-strength general purpose cryptography library. | +| [Osi](https://github.com/coin-or/Osi) | 0.108.11 | math | Osi (Open Solver Interface) provides an abstract base class to a generic linear programming (LP) solver, along with derived classes for specific solvers. Many applications may be able to use the Osi to insulate themselves from a specific LP solver. That is, programs written to the OSI standard may be linked to any solver with an OSI interface and should produce correct results. The OSI has been significantly extended compared to its first incarnation. Currently, the OSI supports linear programming solvers and has rudimentary support for integer programming. | +| [Osi](https://github.com/coin-or/Osi) | 0.108.11 | math | Osi (Open Solver Interface) provides an abstract base class to a generic linear programming (LP) solver, along with derived classes for specific solvers. Many applications may be able to use the Osi to insulate themselves from a specific LP solver. That is, programs written to the OSI standard may be linked to any solver with an OSI interface and should produce correct results. The OSI has been significantly extended compared to its first incarnation. Currently, the OSI supports linear programming solvers and has rudimentary support for integer programming. | +| [PAPI](https://icl.cs.utk.edu/projects/papi/) | 7.2.0 | perf | PAPI provides the tool designer and application engineer with a consistent interface and methodology for use of the performance counter hardware found in most major microprocessors. PAPI enables software engineers to see, in near real time, the relation between software performance and processor events. In addition Component PAPI provides access to a collection of components that expose performance measurement opportunites across the hardware and software stack. | +| [PAPI](https://icl.cs.utk.edu/projects/papi/) | 7.2.0 | perf | PAPI provides the tool designer and application engineer with a consistent interface and methodology for use of the performance counter hardware found in most major microprocessors. PAPI enables software engineers to see, in near real time, the relation between software performance and processor events. In addition Component PAPI provides access to a collection of components that expose performance measurement opportunites across the hardware and software stack. | +| [PAPI](https://icl.cs.utk.edu/projects/papi/) | 7.2.0 | perf | PAPI provides the tool designer and application engineer with a consistent interface and methodology for use of the performance counter hardware found in most major microprocessors. PAPI enables software engineers to see, in near real time, the relation between software performance and processor events. In addition Component PAPI provides access to a collection of components that expose performance measurement opportunites across the hardware and software stack. | +| [PAPI](https://icl.cs.utk.edu/projects/papi/) | 7.2.0 | perf | PAPI provides the tool designer and application engineer with a consistent interface and methodology for use of the performance counter hardware found in most major microprocessors. PAPI enables software engineers to see, in near real time, the relation between software performance and processor events. In addition Component PAPI provides access to a collection of components that expose performance measurement opportunites across the hardware and software stack. | +| [PCRE2](https://www.pcre.org/) | 10.45 | devel | The PCRE library is a set of functions that implement regular expression pattern matching using the same syntax and semantics as Perl 5. | +| [PCRE2](https://www.pcre.org/) | 10.45 | devel | The PCRE library is a set of functions that implement regular expression pattern matching using the same syntax and semantics as Perl 5. | +| [PCRE](https://www.pcre.org/) | 8.45 | devel | The PCRE library is a set of functions that implement regular expression pattern matching using the same syntax and semantics as Perl 5. | +| [PCRE](https://www.pcre.org/) | 8.45 | devel | The PCRE library is a set of functions that implement regular expression pattern matching using the same syntax and semantics as Perl 5. | +| [PETSc](https://www.mcs.anl.gov/petsc) | 3.23.5 | numlib | PETSc, pronounced PET-see (the S is silent), is a suite of data structures and routines for the scalable (parallel) solution of scientific applications modeled by partial differential equations. | +| [PETSc](https://www.mcs.anl.gov/petsc) | 3.23.5 | numlib | PETSc, pronounced PET-see (the S is silent), is a suite of data structures and routines for the scalable (parallel) solution of scientific applications modeled by partial differential equations. | +| [PLUMED](https://www.plumed.org) | 2.9.4 | chem | PLUMED is an open source library for free energy calculations in molecular systems which works together with some of the most popular molecular dynamics engines. Free energy calculations can be performed as a function of many order parameters with a particular focus on biological problems, using state of the art methods such as metadynamics, umbrella sampling and Jarzynski-equation based steered MD. The software, written in C++, can be easily interfaced with both fortran and C/C++ codes. | +| [PLUMED](https://www.plumed.org) | 2.9.4 | chem | PLUMED is an open source library for free energy calculations in molecular systems which works together with some of the most popular molecular dynamics engines. Free energy calculations can be performed as a function of many order parameters with a particular focus on biological problems, using state of the art methods such as metadynamics, umbrella sampling and Jarzynski-equation based steered MD. The software, written in C++, can be easily interfaced with both fortran and C/C++ codes. | +| [PMIx](https://pmix.org/) | 5.0.6 | lib | Process Management for Exascale Environments PMI Exascale (PMIx) represents an attempt to provide an extended version of the PMI standard specifically designed to support clusters up to and including exascale sizes. The overall objective of the project is not to branch the existing pseudo-standard definitions - in fact, PMIx fully supports both of the existing PMI-1 and PMI-2 APIs - but rather to (a) augment and extend those APIs to eliminate some current restrictions that impact scalability, and (b) provide a reference implementation of the PMI-server that demonstrates the desired level of scalability. | +| [PMIx](https://pmix.org/) | 5.0.6 | lib | Process Management for Exascale Environments PMI Exascale (PMIx) represents an attempt to provide an extended version of the PMI standard specifically designed to support clusters up to and including exascale sizes. The overall objective of the project is not to branch the existing pseudo-standard definitions - in fact, PMIx fully supports both of the existing PMI-1 and PMI-2 APIs - but rather to (a) augment and extend those APIs to eliminate some current restrictions that impact scalability, and (b) provide a reference implementation of the PMI-server that demonstrates the desired level of scalability. | +| [PROJ](https://proj.org) | 9.6.2 | lib | Program proj is a standard Unix filter function which converts geographic longitude and latitude coordinates into cartesian coordinates | +| [PROJ](https://proj.org) | 9.6.2 | lib | Program proj is a standard Unix filter function which converts geographic longitude and latitude coordinates into cartesian coordinates | +| [PRRTE](https://docs.prrte.org/) | 3.0.8 | lib | PRRTE is the PMIx Reference RunTime Environment | +| [PRRTE](https://docs.prrte.org/) | 3.0.8 | lib | PRRTE is the PMIx Reference RunTime Environment | +| [Pango](https://www.pango.org/) | 1.56.3 | vis | Pango is a library for laying out and rendering of text, with an emphasis on internationalization. Pango can be used anywhere that text layout is needed, though most of the work on Pango so far has been done in the context of the GTK+ widget toolkit. Pango forms the core of text and font handling for GTK+-2.x. | +| [Pango](https://www.pango.org/) | 1.56.3 | vis | Pango is a library for laying out and rendering of text, with an emphasis on internationalization. Pango can be used anywhere that text layout is needed, though most of the work on Pango so far has been done in the context of the GTK+ widget toolkit. Pango forms the core of text and font handling for GTK+-2.x. | +| [ParMETIS](https://karypis.github.io/glaros/projects/gp.html) | 4.0.3 | math | ParMETIS is an MPI-based parallel library that implements a variety of algorithms for partitioning unstructured graphs, meshes, and for computing fill-reducing orderings of sparse matrices. ParMETIS extends the functionality provided by METIS and includes routines that are especially suited for parallel AMR computations and large scale numerical simulations. The algorithms implemented in ParMETIS are based on the parallel multilevel k-way graph-partitioning, adaptive repartitioning, and parallel multi-constrained partitioning schemes. | +| [ParMETIS](https://karypis.github.io/glaros/projects/gp.html) | 4.0.3 | math | ParMETIS is an MPI-based parallel library that implements a variety of algorithms for partitioning unstructured graphs, meshes, and for computing fill-reducing orderings of sparse matrices. ParMETIS extends the functionality provided by METIS and includes routines that are especially suited for parallel AMR computations and large scale numerical simulations. The algorithms implemented in ParMETIS are based on the parallel multilevel k-way graph-partitioning, adaptive repartitioning, and parallel multi-constrained partitioning schemes. | +| [ParaView](https://www.paraview.org) | 6.0.1 | vis | ParaView is a scientific parallel visualizer. | +| [ParaView](https://www.paraview.org) | 6.0.1 | vis | ParaView is a scientific parallel visualizer. | +| [PennyLane-Lightning](https://pennylane.ai/) | 0.43.0 | quantum | PennyLane is a cross-platform Python library for quantum computing, quantum machine learning, and quantum chemistry. | +| [PennyLane-Lightning](https://pennylane.ai/) | 0.43.0 | quantum | PennyLane is a cross-platform Python library for quantum computing, quantum machine learning, and quantum chemistry. | +| [PennyLane](https://pennylane.ai/) | 0.43.0 | quantum | PennyLane is a cross-platform Python library for quantum computing, quantum machine learning, and quantum chemistry. | +| [PennyLane](https://pennylane.ai/) | 0.43.0 | quantum | PennyLane is a cross-platform Python library for quantum computing, quantum machine learning, and quantum chemistry. | +| [Perl-bundle-CPAN](https://www.perl.org/) | 5.40.0 | lang | A set of common packages from CPAN | +| [Perl-bundle-CPAN](https://www.perl.org/) | 5.40.0 | lang | A set of common packages from CPAN | +| [Perl](https://www.perl.org/) | 5.38.0 | lang | Larry Wall's Practical Extraction and Report Language Includes a small selection of extra CPAN packages for core functionality. | +| [Perl](https://www.perl.org/) | 5.38.0 | lang | Larry Wall's Practical Extraction and Report Language Includes a small selection of extra CPAN packages for core functionality. | +| [Perl](https://www.perl.org/) | 5.40.0 | lang | Larry Wall's Practical Extraction and Report Language Includes a small selection of extra CPAN packages for core functionality. | +| [Perl](https://www.perl.org/) | 5.40.0 | lang | Larry Wall's Practical Extraction and Report Language Includes a small selection of extra CPAN packages for core functionality. | +| [Pillow](https://pillow.readthedocs.org/) | 11.3.0 | vis | Pillow is the 'friendly PIL fork' by Alex Clark and Contributors. PIL is the Python Imaging Library by Fredrik Lundh and Contributors. | +| [Pillow](https://pillow.readthedocs.org/) | 11.3.0 | vis | Pillow is the 'friendly PIL fork' by Alex Clark and Contributors. PIL is the Python Imaging Library by Fredrik Lundh and Contributors. | +| [PnetCDF](https://parallel-netcdf.github.io/) | 1.14.0 | data | Parallel netCDF: A Parallel I/O Library for NetCDF File Access | +| [PnetCDF](https://parallel-netcdf.github.io/) | 1.14.0 | data | Parallel netCDF: A Parallel I/O Library for NetCDF File Access | +| [PostgreSQL](https://www.postgresql.org/) | 17.5 | data | PostgreSQL is a powerful, open source object-relational database system. It is fully ACID compliant, has full support for foreign keys, joins, views, triggers, and stored procedures (in multiple languages). It includes most SQL:2008 data types, including INTEGER, NUMERIC, BOOLEAN, CHAR, VARCHAR, DATE, INTERVAL, and TIMESTAMP. It also supports storage of binary large objects, including pictures, sounds, or video. It has native programming interfaces for C/C++, Java, .Net, Perl, Python, Ruby, Tcl, ODBC, among others, and exceptional documentation. | +| [PostgreSQL](https://www.postgresql.org/) | 17.5 | data | PostgreSQL is a powerful, open source object-relational database system. It is fully ACID compliant, has full support for foreign keys, joins, views, triggers, and stored procedures (in multiple languages). It includes most SQL:2008 data types, including INTEGER, NUMERIC, BOOLEAN, CHAR, VARCHAR, DATE, INTERVAL, and TIMESTAMP. It also supports storage of binary large objects, including pictures, sounds, or video. It has native programming interfaces for C/C++, Java, .Net, Perl, Python, Ruby, Tcl, ODBC, among others, and exceptional documentation. | +| [PuLP](https://github.com/coin-or/pulp) | 2.9.0 | tools | PuLP is an LP modeler written in Python. PuLP can generate MPS or LP files and call GLPK, COIN-OR CLP/CBC, CPLEX, GUROBI, MOSEK, XPRESS, CHOCO, MIPCL, SCIP to solve linear problems. | +| [PuLP](https://github.com/coin-or/pulp) | 2.9.0 | tools | PuLP is an LP modeler written in Python. PuLP can generate MPS or LP files and call GLPK, COIN-OR CLP/CBC, CPLEX, GUROBI, MOSEK, XPRESS, CHOCO, MIPCL, SCIP to solve linear problems. | +| [PyCUDA](https://mathema.tician.de/software/pycuda) | 2025.1.1 | lang | PyCUDA lets you access Nvidia’s CUDA parallel computation API from Python. | +| [PyCUDA](https://mathema.tician.de/software/pycuda) | 2025.1.1 | lang | PyCUDA lets you access Nvidia’s CUDA parallel computation API from Python. | +| [PyCairo](https://pycairo.readthedocs.io/) | 1.28.0 | vis | Python bindings for the cairo library | +| [PyCairo](https://pycairo.readthedocs.io/) | 1.28.0 | vis | Python bindings for the cairo library | +| [PyGObject](https://pygobject.readthedocs.io/) | 3.54.2 | vis | PyGObject is a Python package which provides bindings for GObject based libraries such as GTK, GStreamer, WebKitGTK, GLib, GIO and many more. | +| [PyGObject](https://pygobject.readthedocs.io/) | 3.54.2 | vis | PyGObject is a Python package which provides bindings for GObject based libraries such as GTK, GStreamer, WebKitGTK, GLib, GIO and many more. | +| [PyOpenCL](https://mathema.tician.de/software/pyopencl/) | 2026.1 | vis | PyOpenCL lets you access GPUs and other massively parallel compute devices from Python. | +| [PyOpenCL](https://mathema.tician.de/software/pyopencl/) | 2026.1 | vis | PyOpenCL lets you access GPUs and other massively parallel compute devices from Python. | +| [PyOpenGL](http://pyopengl.sourceforge.net) | 3.1.9 | vis | PyOpenGL is the most common cross platform Python binding to OpenGL and related APIs. | +| [PyOpenGL](http://pyopengl.sourceforge.net) | 3.1.9 | vis | PyOpenGL is the most common cross platform Python binding to OpenGL and related APIs. | +| [PyTorch](https://pytorch.org/) | 2.9.1 | ai | Tensors and Dynamic neural networks in Python with strong GPU acceleration. PyTorch is a deep learning framework that puts Python first. | +| [PyTorch](https://pytorch.org/) | 2.9.1 | ai | Tensors and Dynamic neural networks in Python with strong GPU acceleration. PyTorch is a deep learning framework that puts Python first. | +| [PyWavelets](https://pywavelets.readthedocs.io) | 1.9.0 | lib | PyWavelets is open source wavelet transform software for Python. | +| [PyWavelets](https://pywavelets.readthedocs.io) | 1.9.0 | lib | PyWavelets is open source wavelet transform software for Python. | +| [PyYAML](https://github.com/yaml/pyyaml) | 6.0.2 | lib | PyYAML is a YAML parser and emitter for the Python programming language. | +| [PyYAML](https://github.com/yaml/pyyaml) | 6.0.2 | lib | PyYAML is a YAML parser and emitter for the Python programming language. | +| [PyZMQ](https://www.zeromq.org/bindings:python) | 27.0.0 | devel | Python bindings for ZeroMQ | +| [PyZMQ](https://www.zeromq.org/bindings:python) | 27.0.0 | devel | Python bindings for ZeroMQ | +| [PycURL](http://pycurl.io/) | 7.45.6 | tools | PycURL is a Python interface to libcurl. PycURL can be used to fetch objects identified by a URL from a Python program, similar to the urllib Python module. PycURL is mature, very fast, and supports a lot of features. | +| [PycURL](http://pycurl.io/) | 7.45.6 | tools | PycURL is a Python interface to libcurl. PycURL can be used to fetch objects identified by a URL from a Python program, similar to the urllib Python module. PycURL is mature, very fast, and supports a lot of features. | +| [Python-bundle-PyPI](https://python.org/) | 2025.04 | lang | Bundle of Python packages from PyPI | +| [Python-bundle-PyPI](https://python.org/) | 2025.04 | lang | Bundle of Python packages from PyPI | +| [Python](https://python.org/) | 3.13.1 | lang | Python is a programming language that lets you work more quickly and integrate your systems more effectively. | +| [Python](https://python.org/) | 3.13.1 | lang | Python is a programming language that lets you work more quickly and integrate your systems more effectively. | +| [QCFPGA](https://github.com/ekieffer/qcfpga) | 0.0.1 | quantum | QCFPGA is a FPGA-based fork of QCGPU, an open source, high performance & hardware accelerated, quantum computer simulator | +| [QCFPGA](https://github.com/ekieffer/qcfpga) | 0.0.1 | quantum | QCFPGA is a FPGA-based fork of QCGPU, an open source, high performance & hardware accelerated, quantum computer simulator | +| [Qhull](http://www.qhull.org) | 2020.2 | math | Qhull computes the convex hull, Delaunay triangulation, Voronoi diagram, halfspace intersection about a point, furthest-site Delaunay triangulation, and furthest-site Voronoi diagram. The source code runs in 2-d, 3-d, 4-d, and higher dimensions. Qhull implements the Quickhull algorithm for computing the convex hull. | +| [Qhull](http://www.qhull.org) | 2020.2 | math | Qhull computes the convex hull, Delaunay triangulation, Voronoi diagram, halfspace intersection about a point, furthest-site Delaunay triangulation, and furthest-site Voronoi diagram. The source code runs in 2-d, 3-d, 4-d, and higher dimensions. Qhull implements the Quickhull algorithm for computing the convex hull. | +| [Qiskit](https://qiskit.org) | 2.0.2 | quantum | Qiskit is an open-source framework for working with noisy quantum computers at the level of pulses, circuits, and algorithms. | +| [Qiskit](https://qiskit.org) | 2.0.2 | quantum | Qiskit is an open-source framework for working with noisy quantum computers at the level of pulses, circuits, and algorithms. | +| [Qt6](https://qt.io/) | 6.9.3 | devel | Qt is a comprehensive cross-platform C++ application framework. | +| [Qt6](https://qt.io/) | 6.9.3 | devel | Qt is a comprehensive cross-platform C++ application framework. | +| [QuantumESPRESSO](https://www.quantum-espresso.org) | 7.5 | chem | Quantum ESPRESSO is an integrated suite of computer codes for electronic-structure calculations and materials modeling at the nanoscale. It is based on density-functional theory, plane waves, and pseudopotentials (both norm-conserving and ultrasoft). | +| [QuantumESPRESSO](https://www.quantum-espresso.org) | 7.5 | chem | Quantum ESPRESSO is an integrated suite of computer codes for electronic-structure calculations and materials modeling at the nanoscale. It is based on density-functional theory, plane waves, and pseudopotentials (both norm-conserving and ultrasoft). | +| [RE2](https://github.com/google/re2) | 2024-07-02 | lib | RE2 is a fast, safe, thread-friendly alternative to backtracking regular expression engines like those used in PCRE, Perl, and Python. It is a C++ library. | +| [RE2](https://github.com/google/re2) | 2024-07-02 | lib | RE2 is a fast, safe, thread-friendly alternative to backtracking regular expression engines like those used in PCRE, Perl, and Python. It is a C++ library. | +| [R](https://www.r-project.org/) | 4.5.1 | lang | R is a free software environment for statistical computing and graphics. | +| [R](https://www.r-project.org/) | 4.5.1 | lang | R is a free software environment for statistical computing and graphics. | +| [RapidJSON](https://rapidjson.org) | 1.1.0-20250205 | lib | A fast JSON parser/generator for C++ with both SAX/DOM style API | +| [RapidJSON](https://rapidjson.org) | 1.1.0-20250205 | lib | A fast JSON parser/generator for C++ with both SAX/DOM style API | +| [ReFrame](https://github.com/reframe-hpc/reframe) | 4.8.4 | devel | ReFrame is a framework for writing regression tests for HPC systems. | +| [ReFrame](https://github.com/reframe-hpc/reframe) | 4.8.4 | devel | ReFrame is a framework for writing regression tests for HPC systems. | +| [Rust](https://www.rust-lang.org) | 1.85.1 | lang | Rust is a systems programming language that runs blazingly fast, prevents segfaults, and guarantees thread safety. | +| [Rust](https://www.rust-lang.org) | 1.85.1 | lang | Rust is a systems programming language that runs blazingly fast, prevents segfaults, and guarantees thread safety. | +| [SCOTCH](https://www.labri.fr/perso/pelegrin/scotch/) | 7.0.8 | math | Software package and libraries for sequential and parallel graph partitioning, static mapping, and sparse matrix block ordering, and sequential mesh and hypergraph partitioning. | +| [SCOTCH](https://www.labri.fr/perso/pelegrin/scotch/) | 7.0.8 | math | Software package and libraries for sequential and parallel graph partitioning, static mapping, and sparse matrix block ordering, and sequential mesh and hypergraph partitioning. | +| [SDL2](https://www.libsdl.org/) | 2.32.8 | lib | SDL: Simple DirectMedia Layer, a cross-platform multimedia library | +| [SDL2](https://www.libsdl.org/) | 2.32.8 | lib | SDL: Simple DirectMedia Layer, a cross-platform multimedia library | +| [SIONlib](https://www.fz-juelich.de/ias/jsc/EN/Expertise/Support/Software/SIONlib/_node.html) | 1.7.7 | lib | SIONlib is a scalable I/O library for parallel access to task-local files. The library not only supports writing and reading binary data to or from several thousands of processors into a single or a small number of physical files, but also provides global open and close functions to access SIONlib files in parallel. This package provides a stripped-down installation of SIONlib for use with performance tools (e.g., Score-P), with renamed symbols to avoid conflicts when an application using SIONlib itself is linked against a tool requiring a different SIONlib version. | +| [SIONlib](https://www.fz-juelich.de/ias/jsc/EN/Expertise/Support/Software/SIONlib/_node.html) | 1.7.7 | lib | SIONlib is a scalable I/O library for parallel access to task-local files. The library not only supports writing and reading binary data to or from several thousands of processors into a single or a small number of physical files, but also provides global open and close functions to access SIONlib files in parallel. This package provides a stripped-down installation of SIONlib for use with performance tools (e.g., Score-P), with renamed symbols to avoid conflicts when an application using SIONlib itself is linked against a tool requiring a different SIONlib version. | +| [SOCI](http://soci.sourceforge.net/) | 4.1.2 | lang | SOCI is a database access library for C++ that makes the illusion of embedding SQL queries in the regular C++ code, staying entirely within the Standard C++. | +| [SOCI](http://soci.sourceforge.net/) | 4.1.2 | lang | SOCI is a database access library for C++ that makes the illusion of embedding SQL queries in the regular C++ code, staying entirely within the Standard C++. | +| [SQLAlchemy](https://www.sqlalchemy.org/) | 2.0.41 | lib | SQLAlchemy is the Python SQL toolkit and Object Relational Mapper that gives application developers the full power and flexibility of SQL. SQLAlchemy provides a full suite of well known enterprise-level persistence patterns, designed for efficient and high-performing database access, adapted into a simple and Pythonic domain language. | +| [SQLAlchemy](https://www.sqlalchemy.org/) | 2.0.41 | lib | SQLAlchemy is the Python SQL toolkit and Object Relational Mapper that gives application developers the full power and flexibility of SQL. SQLAlchemy provides a full suite of well known enterprise-level persistence patterns, designed for efficient and high-performing database access, adapted into a simple and Pythonic domain language. | +| [SQLite](https://www.sqlite.org/) | 3.47.2 | devel | SQLite: SQL Database Engine in a C Library | +| [SQLite](https://www.sqlite.org/) | 3.47.2 | devel | SQLite: SQL Database Engine in a C Library | +| [SWIG](http://www.swig.org/) | 4.3.1 | devel | SWIG is a software development tool that connects programs written in C and C++ with a variety of high-level programming languages. | +| [SWIG](http://www.swig.org/) | 4.3.1 | devel | SWIG is a software development tool that connects programs written in C and C++ with a variety of high-level programming languages. | +| [ScaLAPACK](https://www.netlib.org/scalapack/) | 2.2.2 | numlib | The ScaLAPACK (or Scalable LAPACK) library includes a subset of LAPACK routines redesigned for distributed memory MIMD parallel computers. | +| [ScaLAPACK](https://www.netlib.org/scalapack/) | 2.2.2 | numlib | The ScaLAPACK (or Scalable LAPACK) library includes a subset of LAPACK routines redesigned for distributed memory MIMD parallel computers. | +| [Scalasca](https://www.scalasca.org/) | 2.6.2 | perf | Scalasca is a software tool that supports the performance optimization of parallel programs by measuring and analyzing their runtime behavior. The analysis identifies potential performance bottlenecks -- in particular those concerning communication and synchronization -- and offers guidance in exploring their causes. | +| [Scalasca](https://www.scalasca.org/) | 2.6.2 | perf | Scalasca is a software tool that supports the performance optimization of parallel programs by measuring and analyzing their runtime behavior. The analysis identifies potential performance bottlenecks -- in particular those concerning communication and synchronization -- and offers guidance in exploring their causes. | +| [SciPy-bundle](https://python.org/) | 2025.06 | lang | Bundle of Python packages for scientific software | +| [SciPy-bundle](https://python.org/) | 2025.06 | lang | Bundle of Python packages for scientific software | +| [Score-P](https://www.score-p.org) | 9.0 | perf | The Score-P measurement infrastructure is a highly scalable and easy-to-use tool suite for profiling, event tracing, and online analysis of HPC applications. | +| [Score-P](https://www.score-p.org) | 9.0 | perf | The Score-P measurement infrastructure is a highly scalable and easy-to-use tool suite for profiling, event tracing, and online analysis of HPC applications. | +| [Score-P](https://www.score-p.org) | 9.3 | perf | The Score-P measurement infrastructure is a highly scalable and easy-to-use tool suite for profiling, event tracing, and online analysis of HPC applications. | +| [Score-P](https://www.score-p.org) | 9.3 | perf | The Score-P measurement infrastructure is a highly scalable and easy-to-use tool suite for profiling, event tracing, and online analysis of HPC applications. | +| [Score-P](https://www.score-p.org) | 9.3 | perf | The Score-P measurement infrastructure is a highly scalable and easy-to-use tool suite for profiling, event tracing, and online analysis of HPC applications. | +| [Score-P](https://www.score-p.org) | 9.3 | perf | The Score-P measurement infrastructure is a highly scalable and easy-to-use tool suite for profiling, event tracing, and online analysis of HPC applications. | +| [Seaborn](https://seaborn.pydata.org/) | 0.13.2 | bio | Seaborn is a Python visualization library based on matplotlib. It provides a high-level interface for drawing attractive statistical graphics. | +| [Seaborn](https://seaborn.pydata.org/) | 0.13.2 | bio | Seaborn is a Python visualization library based on matplotlib. It provides a high-level interface for drawing attractive statistical graphics. | +| [Shapely](https://github.com/Toblerity/Shapely) | 2.1.1 | math | Shapely is a BSD-licensed Python package for manipulation and analysis of planar geometric objects. It is based on the widely deployed GEOS (the engine of PostGIS) and JTS (from which GEOS is ported) libraries. | +| [Shapely](https://github.com/Toblerity/Shapely) | 2.1.1 | math | Shapely is a BSD-licensed Python package for manipulation and analysis of planar geometric objects. It is based on the widely deployed GEOS (the engine of PostGIS) and JTS (from which GEOS is ported) libraries. | +| [Spark](https://spark.apache.org) | 4.0.0 | devel | Spark is Hadoop MapReduce done in memory | +| [Spark](https://spark.apache.org) | 4.0.0 | devel | Spark is Hadoop MapReduce done in memory | +| [SuiteSparse](https://faculty.cse.tamu.edu/davis/suitesparse.html) | 7.10.3 | numlib | SuiteSparse is a collection of libraries to manipulate sparse matrices. | +| [SuiteSparse](https://faculty.cse.tamu.edu/davis/suitesparse.html) | 7.10.3 | numlib | SuiteSparse is a collection of libraries to manipulate sparse matrices. | +| [SuperLU_DIST](https://crd-legacy.lbl.gov/~xiaoye/SuperLU/) | 9.1.0 | numlib | SuperLU is a general purpose library for the direct solution of large, sparse, nonsymmetric systems of linear equations on high performance machines. | +| [SuperLU_DIST](https://crd-legacy.lbl.gov/~xiaoye/SuperLU/) | 9.1.0 | numlib | SuperLU is a general purpose library for the direct solution of large, sparse, nonsymmetric systems of linear equations on high performance machines. | +| [SymEngine-python](https://github.com/symengine/symengine.py) | 0.14.0 | lib | Python wrappers to the C++ library SymEngine, a fast C++ symbolic manipulation library. | +| [SymEngine-python](https://github.com/symengine/symengine.py) | 0.14.0 | lib | Python wrappers to the C++ library SymEngine, a fast C++ symbolic manipulation library. | +| [SymEngine](https://github.com/symengine/symengine) | 0.14.0 | lib | SymEngine is a standalone fast C++ symbolic manipulation library | +| [SymEngine](https://github.com/symengine/symengine) | 0.14.0 | lib | SymEngine is a standalone fast C++ symbolic manipulation library | +| [Szip](https://docs.hdfgroup.org/archive/support/doc_resource/SZIP/index.html) | 2.1.1 | tools | Szip compression software, providing lossless compression of scientific data | +| [Szip](https://docs.hdfgroup.org/archive/support/doc_resource/SZIP/index.html) | 2.1.1 | tools | Szip compression software, providing lossless compression of scientific data | +| [Tcl](https://www.tcl.tk/) | 8.6.16 | lang | Tcl (Tool Command Language) is a very powerful but easy to learn dynamic programming language, suitable for a very wide range of uses, including web and desktop applications, networking, administration, testing and many more. | +| [Tcl](https://www.tcl.tk/) | 8.6.16 | lang | Tcl (Tool Command Language) is a very powerful but easy to learn dynamic programming language, suitable for a very wide range of uses, including web and desktop applications, networking, administration, testing and many more. | +| [Tk](https://www.tcl.tk/) | 8.6.16 | vis | Tk is an open source, cross-platform widget toolchain that provides a library of basic elements for building a graphical user interface (GUI) in many different programming languages. | +| [Tk](https://www.tcl.tk/) | 8.6.16 | vis | Tk is an open source, cross-platform widget toolchain that provides a library of basic elements for building a graphical user interface (GUI) in many different programming languages. | +| [Tkinter](https://python.org/) | 3.13.1 | lang | Tkinter module, built with the Python buildsystem | +| [Tkinter](https://python.org/) | 3.13.1 | lang | Tkinter module, built with the Python buildsystem | +| [Triton](https://triton-lang.org/) | 3.4.0 | devel | Triton is a language and compiler for parallel programming. It aims to provide a Python-based programming environment for productively writing custom DNN compute kernels capable of running at maximal throughput on modern GPU hardware. | +| [Triton](https://triton-lang.org/) | 3.4.0 | devel | Triton is a language and compiler for parallel programming. It aims to provide a Python-based programming environment for productively writing custom DNN compute kernels capable of running at maximal throughput on modern GPU hardware. | +| [UCC-CUDA](https://www.openucx.org/) | 1.3.0 | lib | UCC (Unified Collective Communication) is a collective communication operations API and library that is flexible, complete, and feature-rich for current and emerging programming models and runtimes. This module adds the UCC CUDA support. | +| [UCC-CUDA](https://www.openucx.org/) | 1.3.0 | lib | UCC (Unified Collective Communication) is a collective communication operations API and library that is flexible, complete, and feature-rich for current and emerging programming models and runtimes. This module adds the UCC CUDA support. | +| [UCC](https://www.openucx.org/) | 1.3.0 | lib | UCC (Unified Collective Communication) is a collective communication operations API and library that is flexible, complete, and feature-rich for current and emerging programming models and runtimes. | +| [UCC](https://www.openucx.org/) | 1.3.0 | lib | UCC (Unified Collective Communication) is a collective communication operations API and library that is flexible, complete, and feature-rich for current and emerging programming models and runtimes. | +| [UCX-CUDA](http://www.openucx.org/) | 1.18.0 | lib | Unified Communication X An open-source production grade communication framework for data centric and high-performance applications This module adds the UCX CUDA support. | +| [UCX-CUDA](http://www.openucx.org/) | 1.18.0 | lib | Unified Communication X An open-source production grade communication framework for data centric and high-performance applications This module adds the UCX CUDA support. | +| [UCX](https://www.openucx.org/) | 1.18.0 | lib | Unified Communication X An open-source production grade communication framework for data centric and high-performance applications | +| [UCX](https://www.openucx.org/) | 1.18.0 | lib | Unified Communication X An open-source production grade communication framework for data centric and high-performance applications | +| [UDUNITS](https://www.unidata.ucar.edu/software/udunits/) | 2.2.28 | phys | UDUNITS supports conversion of unit specifications between formatted and binary forms, arithmetic manipulation of units, and conversion of values between compatible scales of measurement. | +| [UDUNITS](https://www.unidata.ucar.edu/software/udunits/) | 2.2.28 | phys | UDUNITS supports conversion of unit specifications between formatted and binary forms, arithmetic manipulation of units, and conversion of values between compatible scales of measurement. | +| [UnZip](http://www.info-zip.org/UnZip.html) | 6.0 | tools | UnZip is an extraction utility for archives compressed in .zip format (also called "zipfiles"). Although highly compatible both with PKWARE's PKZIP and PKUNZIP utilities for MS-DOS and with Info-ZIP's own Zip program, our primary objectives have been portability and non-MSDOS functionality. | +| [UnZip](http://www.info-zip.org/UnZip.html) | 6.0 | tools | UnZip is an extraction utility for archives compressed in .zip format (also called "zipfiles"). Although highly compatible both with PKWARE's PKZIP and PKUNZIP utilities for MS-DOS and with Info-ZIP's own Zip program, our primary objectives have been portability and non-MSDOS functionality. | +| [VTune](https://software.intel.com/en-us/vtune) | 2025.4.0 | tools | Intel VTune Amplifier XE is the premier performance profiler for C, C++, C#, Fortran, Assembly and Java. | +| [VTune](https://software.intel.com/en-us/vtune) | 2025.4.0 | tools | Intel VTune Amplifier XE is the premier performance profiler for C, C++, C#, Fortran, Assembly and Java. | +| [Valgrind](https://valgrind.org) | 3.25.0 | debugger | Valgrind: Debugging and profiling tools | +| [Valgrind](https://valgrind.org) | 3.25.0 | debugger | Valgrind: Debugging and profiling tools | +| [VirtualGL](https://virtualgl.org/) | 3.1.3 | vis | VirtualGL is an open source toolkit that gives any Linux or Unix remote display software the ability to run OpenGL applications with full hardware acceleration. | +| [VirtualGL](https://virtualgl.org/) | 3.1.3 | vis | VirtualGL is an open source toolkit that gives any Linux or Unix remote display software the ability to run OpenGL applications with full hardware acceleration. | +| [WRF](https://www.mmm.ucar.edu/models/wrf) | 4.6.1 | geo | The Weather Research and Forecasting (WRF) Model is a next-generation mesoscale numerical weather prediction system designed to serve both operational forecasting and atmospheric research needs. | +| [WRF](https://www.mmm.ucar.edu/models/wrf) | 4.6.1 | geo | The Weather Research and Forecasting (WRF) Model is a next-generation mesoscale numerical weather prediction system designed to serve both operational forecasting and atmospheric research needs. | +| [Wannier90](http://www.wannier.org) | 3.1.0 | chem | A tool for obtaining maximally-localised Wannier functions | +| [Wannier90](http://www.wannier.org) | 3.1.0 | chem | A tool for obtaining maximally-localised Wannier functions | +| [Wannier90](http://www.wannier.org) | 3.1.0 | chem | A tool for obtaining maximally-localised Wannier functions | +| [Wannier90](http://www.wannier.org) | 3.1.0 | chem | A tool for obtaining maximally-localised Wannier functions | +| [Wayland](https://wayland.freedesktop.org/) | 1.23.92 | vis | Wayland is a project to define a protocol for a compositor to talk to its clients as well as a library implementation of the protocol. The compositor can be a standalone display server running on Linux kernel modesetting and evdev input devices, an X application, or a wayland client itself. The clients can be traditional applications, X servers (rootless or fullscreen) or other display servers. | +| [Wayland](https://wayland.freedesktop.org/) | 1.23.92 | vis | Wayland is a project to define a protocol for a compositor to talk to its clients as well as a library implementation of the protocol. The compositor can be a standalone display server running on Linux kernel modesetting and evdev input devices, an X application, or a wayland client itself. The clients can be traditional applications, X servers (rootless or fullscreen) or other display servers. | +| [X11](https://www.x.org) | 20250521 | vis | The X Window System (X11) is a windowing system for bitmap displays | +| [X11](https://www.x.org) | 20250521 | vis | The X Window System (X11) is a windowing system for bitmap displays | +| [XGBoost](https://github.com/dmlc/xgboost) | 3.1.1 | ai | XGBoost is an optimized distributed gradient boosting library designed to be highly efficient, flexible and portable. | +| [XGBoost](https://github.com/dmlc/xgboost) | 3.1.1 | ai | XGBoost is an optimized distributed gradient boosting library designed to be highly efficient, flexible and portable. | +| [XZ](https://tukaani.org/xz/) | 5.6.3 | tools | xz: XZ utilities | +| [XZ](https://tukaani.org/xz/) | 5.6.3 | tools | xz: XZ utilities | +| [Xerces-C++](https://xerces.apache.org/xerces-c/) | 3.3.0 | lib | Xerces-C++ is a validating XML parser written in a portable subset of C++. Xerces-C++ makes it easy to give your application the ability to read and write XML data. A shared library is provided for parsing, generating, manipulating, and validating XML documents using the DOM, SAX, and SAX2 APIs. | +| [Xerces-C++](https://xerces.apache.org/xerces-c/) | 3.3.0 | lib | Xerces-C++ is a validating XML parser written in a portable subset of C++. Xerces-C++ makes it easy to give your application the ability to read and write XML data. A shared library is provided for parsing, generating, manipulating, and validating XML documents using the DOM, SAX, and SAX2 APIs. | +| [Xvfb](https://www.x.org/releases/X11R7.6/doc/man/man1/Xvfb.1.xhtml) | 21.1.18 | vis | Xvfb is an X server that can run on machines with no display hardware and no physical input devices. It emulates a dumb framebuffer using virtual memory. | +| [Xvfb](https://www.x.org/releases/X11R7.6/doc/man/man1/Xvfb.1.xhtml) | 21.1.18 | vis | Xvfb is an X server that can run on machines with no display hardware and no physical input devices. It emulates a dumb framebuffer using virtual memory. | +| [Yasm](https://www.tortall.net/projects/yasm/) | 1.3.0 | lang | Yasm: Complete rewrite of the NASM assembler with BSD license | +| [Yasm](https://www.tortall.net/projects/yasm/) | 1.3.0 | lang | Yasm: Complete rewrite of the NASM assembler with BSD license | +| [Z3](https://github.com/Z3Prover/z3) | 4.13.4 | tools | Z3 is a theorem prover from Microsoft Research with support for bitvectors, booleans, arrays, floating point numbers, strings, and other data types. This module includes z3-solver, the Python interface of Z3. | +| [Z3](https://github.com/Z3Prover/z3) | 4.13.4 | tools | Z3 is a theorem prover from Microsoft Research with support for bitvectors, booleans, arrays, floating point numbers, strings, and other data types. This module includes z3-solver, the Python interface of Z3. | +| [ZeroMQ](https://www.zeromq.org/) | 4.3.5 | devel | ZeroMQ looks like an embeddable networking library but acts like a concurrency framework. It gives you sockets that carry atomic messages across various transports like in-process, inter-process, TCP, and multicast. You can connect sockets N-to-N with patterns like fanout, pub-sub, task distribution, and request-reply. It's fast enough to be the fabric for clustered products. Its asynchronous I/O model gives you scalable multicore applications, built as asynchronous message-processing tasks. It has a score of language APIs and runs on most operating systems. | +| [ZeroMQ](https://www.zeromq.org/) | 4.3.5 | devel | ZeroMQ looks like an embeddable networking library but acts like a concurrency framework. It gives you sockets that carry atomic messages across various transports like in-process, inter-process, TCP, and multicast. You can connect sockets N-to-N with patterns like fanout, pub-sub, task distribution, and request-reply. It's fast enough to be the fabric for clustered products. Its asynchronous I/O model gives you scalable multicore applications, built as asynchronous message-processing tasks. It has a score of language APIs and runs on most operating systems. | +| [Zip](http://www.info-zip.org/Zip.html) | 3.0 | tools | Zip is a compression and file packaging/archive utility. Although highly compatible both with PKWARE's PKZIP and PKUNZIP utilities for MS-DOS and with Info-ZIP's own UnZip, our primary objectives have been portability and other-than-MSDOS functionality | +| [Zip](http://www.info-zip.org/Zip.html) | 3.0 | tools | Zip is a compression and file packaging/archive utility. Although highly compatible both with PKWARE's PKZIP and PKUNZIP utilities for MS-DOS and with Info-ZIP's own UnZip, our primary objectives have been portability and other-than-MSDOS functionality | +| [Zoltan](https://sandialabs.github.io/Zoltan/) | 3.901 | cae | Zoltan Dynamic Load Balancing and Graph Algorithm Toolkit | +| [Zoltan](https://sandialabs.github.io/Zoltan/) | 3.901 | cae | Zoltan Dynamic Load Balancing and Graph Algorithm Toolkit | +| [absl-py](https://github.com/abseil/abseil-py) | 2.3.1 | tools | absl-py is a collection of Python library code for building Python applications. The code is collected from Google's own Python code base, and has been extensively tested and used in production. | +| [absl-py](https://github.com/abseil/abseil-py) | 2.3.1 | tools | absl-py is a collection of Python library code for building Python applications. The code is collected from Google's own Python code base, and has been extensively tested and used in production. | +| [aiohttp](https://github.com/aio-libs/aiohttp) | 3.12.13 | lib | Asynchronous HTTP client/server framework for asyncio and Python. | +| [aiohttp](https://github.com/aio-libs/aiohttp) | 3.12.13 | lib | Asynchronous HTTP client/server framework for asyncio and Python. | +| [ant](https://ant.apache.org/) | 1.10.14 | devel | Apache Ant is a Java library and command-line tool whose mission is to drive processes described in build files as targets and extension points dependent upon each other. The main known usage of Ant is the build of Java applications. | +| [ant](https://ant.apache.org/) | 1.10.14 | devel | Apache Ant is a Java library and command-line tool whose mission is to drive processes described in build files as targets and extension points dependent upon each other. The main known usage of Ant is the build of Java applications. | +| [ant](https://ant.apache.org/) | 1.10.14 | devel | Apache Ant is a Java library and command-line tool whose mission is to drive processes described in build files as targets and extension points dependent upon each other. The main known usage of Ant is the build of Java applications. | +| [ant](https://ant.apache.org/) | 1.10.14 | devel | Apache Ant is a Java library and command-line tool whose mission is to drive processes described in build files as targets and extension points dependent upon each other. The main known usage of Ant is the build of Java applications. | +| [archspec](https://github.com/archspec/archspec) | 0.2.5 | tools | A library for detecting, labeling, and reasoning about microarchitectures | +| [archspec](https://github.com/archspec/archspec) | 0.2.5 | tools | A library for detecting, labeling, and reasoning about microarchitectures | +| [arpack-ng](https://github.com/opencollab/arpack-ng) | 3.9.1 | numlib | ARPACK is a collection of Fortran77 subroutines designed to solve large scale eigenvalue problems. | +| [arpack-ng](https://github.com/opencollab/arpack-ng) | 3.9.1 | numlib | ARPACK is a collection of Fortran77 subroutines designed to solve large scale eigenvalue problems. | +| [assimp](https://github.com/assimp/assimp) | 6.0.2 | vis | Open Asset Import Library (assimp) is a library to import and export various 3d-model-formats including scene-post-processing to generate missing render data. | +| [assimp](https://github.com/assimp/assimp) | 6.0.2 | vis | Open Asset Import Library (assimp) is a library to import and export various 3d-model-formats including scene-post-processing to generate missing render data. | +| [at-spi2-atk](https://wiki.gnome.org/Accessibility) | 2.38.0 | vis | AT-SPI 2 toolkit bridge | +| [at-spi2-atk](https://wiki.gnome.org/Accessibility) | 2.38.0 | vis | AT-SPI 2 toolkit bridge | +| [at-spi2-core](https://wiki.gnome.org/Accessibility) | 2.56.2 | vis | Assistive Technology Service Provider Interface. | +| [at-spi2-core](https://wiki.gnome.org/Accessibility) | 2.56.2 | vis | Assistive Technology Service Provider Interface. | +| [attr](https://savannah.nongnu.org/projects/attr) | 2.5.2 | tools | Commands for Manipulating Filesystem Extended Attributes | +| [attr](https://savannah.nongnu.org/projects/attr) | 2.5.2 | tools | Commands for Manipulating Filesystem Extended Attributes | +| [bcrypt](https://github.com/pyca/bcrypt/) | 4.3.0 | tools | Acceptable password hashing for your software and your servers (but you should really use argon2id or scrypt) | +| [bcrypt](https://github.com/pyca/bcrypt/) | 4.3.0 | tools | Acceptable password hashing for your software and your servers (but you should really use argon2id or scrypt) | +| [binutils](https://directory.fsf.org/project/binutils/) | 2.40 | tools | binutils: GNU binary utilities | +| [binutils](https://directory.fsf.org/project/binutils/) | 2.40 | tools | binutils: GNU binary utilities | +| [binutils](https://directory.fsf.org/project/binutils/) | 2.42 | tools | binutils: GNU binary utilities | +| [binutils](https://directory.fsf.org/project/binutils/) | 2.42 | tools | binutils: GNU binary utilities | +| [binutils](https://directory.fsf.org/project/binutils/) | 2.42 | tools | binutils: GNU binary utilities | +| [binutils](https://directory.fsf.org/project/binutils/) | 2.42 | tools | binutils: GNU binary utilities | +| [bokeh](https://github.com/bokeh/bokeh) | 3.7.3 | tools | Statistical and novel interactive HTML plots for Python | +| [bokeh](https://github.com/bokeh/bokeh) | 3.7.3 | tools | Statistical and novel interactive HTML plots for Python | +| [bzip2](https://sourceware.org/bzip2) | 1.0.8 | tools | bzip2 is a freely available, patent free, high-quality data compressor. It typically compresses files to within 10% to 15% of the best available techniques (the PPM family of statistical compressors), whilst being around twice as fast at compression and six times faster at decompression. | +| [bzip2](https://sourceware.org/bzip2) | 1.0.8 | tools | bzip2 is a freely available, patent free, high-quality data compressor. It typically compresses files to within 10% to 15% of the best available techniques (the PPM family of statistical compressors), whilst being around twice as fast at compression and six times faster at decompression. | +| [cURL](https://curl.haxx.se) | 8.11.1 | tools | libcurl is a free and easy-to-use client-side URL transfer library, supporting DICT, FILE, FTP, FTPS, Gopher, HTTP, HTTPS, IMAP, IMAPS, LDAP, LDAPS, POP3, POP3S, RTMP, RTSP, SCP, SFTP, SMTP, SMTPS, Telnet and TFTP. libcurl supports SSL certificates, HTTP POST, HTTP PUT, FTP uploading, HTTP form based upload, proxies, cookies, user+password authentication (Basic, Digest, NTLM, Negotiate, Kerberos), file transfer resume, http proxy tunneling and more. | +| [cURL](https://curl.haxx.se) | 8.11.1 | tools | libcurl is a free and easy-to-use client-side URL transfer library, supporting DICT, FILE, FTP, FTPS, Gopher, HTTP, HTTPS, IMAP, IMAPS, LDAP, LDAPS, POP3, POP3S, RTMP, RTSP, SCP, SFTP, SMTP, SMTPS, Telnet and TFTP. libcurl supports SSL certificates, HTTP POST, HTTP PUT, FTP uploading, HTTP form based upload, proxies, cookies, user+password authentication (Basic, Digest, NTLM, Negotiate, Kerberos), file transfer resume, http proxy tunneling and more. | +| [cairo](https://cairographics.org) | 1.18.4 | vis | Cairo is a 2D graphics library with support for multiple output devices. Currently supported output targets include the X Window System (via both Xlib and XCB), Quartz, Win32, image buffers, PostScript, PDF, and SVG file output. Experimental backends include OpenGL, BeOS, OS/2, and DirectFB | +| [cairo](https://cairographics.org) | 1.18.4 | vis | Cairo is a 2D graphics library with support for multiple output devices. Currently supported output targets include the X Window System (via both Xlib and XCB), Quartz, Win32, image buffers, PostScript, PDF, and SVG file output. Experimental backends include OpenGL, BeOS, OS/2, and DirectFB | +| [cargo-c](https://github.com/lu-zero/cargo-c) | 0.10.13 | tools | Applet for cargo to build and install C-ABI compatible dynamic and static libraries. It produces and installs a correct pkg-config file, a static library and a dynamic library, and a C header to be used by any C (and C-compatible) software. | +| [cargo-c](https://github.com/lu-zero/cargo-c) | 0.10.13 | tools | Applet for cargo to build and install C-ABI compatible dynamic and static libraries. It produces and installs a correct pkg-config file, a static library and a dynamic library, and a C header to be used by any C (and C-compatible) software. | +| [cffi](https://cffi.readthedocs.io/en/latest/) | 1.17.1 | tools | C Foreign Function Interface for Python. Interact with almost any C code from Python, based on C-like declarations that you can often copy-paste from header files or documentation. | +| [cffi](https://cffi.readthedocs.io/en/latest/) | 1.17.1 | tools | C Foreign Function Interface for Python. Interact with almost any C code from Python, based on C-like declarations that you can often copy-paste from header files or documentation. | +| [conan](https://conan.io) | 1.66.0 | devel | Decentralized, open-source (MIT), C/C++ package manager. | +| [conan](https://conan.io) | 1.66.0 | devel | Decentralized, open-source (MIT), C/C++ package manager. | +| [configurable-http-proxy](https://github.com/jupyterhub/configurable-http-proxy) | 5.0.1 | tools | HTTP proxy for node.js including a REST API for updating the routing table. Developed as a part of the Jupyter Hub multi-user server. | +| [configurable-http-proxy](https://github.com/jupyterhub/configurable-http-proxy) | 5.0.1 | tools | HTTP proxy for node.js including a REST API for updating the routing table. Developed as a part of the Jupyter Hub multi-user server. | +| [cooler](https://open2c.github.io/cooler) | 0.10.4 | bio | Cooler is a support library for a storage format, also called cooler, used to store genomic interaction data of any size, such as Hi-C contact matrices. | +| [cooler](https://open2c.github.io/cooler) | 0.10.4 | bio | Cooler is a support library for a storage format, also called cooler, used to store genomic interaction data of any size, such as Hi-C contact matrices. | +| [cppy](https://github.com/nucleic/cppy) | 1.3.1 | tools | A small C++ header library which makes it easier to write Python extension modules. The primary feature is a PyObject smart pointer which automatically handles reference counting and provides convenience methods for performing common object operations. | +| [cppy](https://github.com/nucleic/cppy) | 1.3.1 | tools | A small C++ header library which makes it easier to write Python extension modules. The primary feature is a PyObject smart pointer which automatically handles reference counting and provides convenience methods for performing common object operations. | +| [cryptography](https://github.com/pyca/cryptography) | 44.0.2 | tools | cryptography is a package designed to expose cryptographic primitives and recipes to Python developers. | +| [cryptography](https://github.com/pyca/cryptography) | 44.0.2 | tools | cryptography is a package designed to expose cryptographic primitives and recipes to Python developers. | +| [cuDNN](https://developer.nvidia.com/cudnn) | 9.10.1.4 | numlib | The NVIDIA CUDA Deep Neural Network library (cuDNN) is a GPU-accelerated library of primitives for deep neural networks. | +| [cuDNN](https://developer.nvidia.com/cudnn) | 9.10.1.4 | numlib | The NVIDIA CUDA Deep Neural Network library (cuDNN) is a GPU-accelerated library of primitives for deep neural networks. | +| [cuQuantum-Python](https://developer.nvidia.com/cuquantum-sdk) | 25.11.0.7 | devel | NVIDIA cuQuantum is an SDK of optimized libraries and tools for accelerating quantum computing workflows. With NVIDIA Tensor Core GPUs, developers can use cuQuantum to speed up quantum circuit simulations based on state vector and tensor network methods by orders of magnitude. | +| [cuQuantum-Python](https://developer.nvidia.com/cuquantum-sdk) | 25.11.0.7 | devel | NVIDIA cuQuantum is an SDK of optimized libraries and tools for accelerating quantum computing workflows. With NVIDIA Tensor Core GPUs, developers can use cuQuantum to speed up quantum circuit simulations based on state vector and tensor network methods by orders of magnitude. | +| [cuQuantum](https://developer.nvidia.com/cuquantum-sdk) | 25.03.0.11 | lib | NVIDIA cuQuantum is an SDK of libraries and tools for quantum computing workflows. | +| [cuQuantum](https://developer.nvidia.com/cuquantum-sdk) | 25.03.0.11 | lib | NVIDIA cuQuantum is an SDK of libraries and tools for quantum computing workflows. | +| [cuQuantum](https://developer.nvidia.com/cuquantum-sdk) | 25.11.0.7 | lib | NVIDIA cuQuantum is an SDK of libraries and tools for quantum computing workflows. | +| [cuQuantum](https://developer.nvidia.com/cuquantum-sdk) | 25.11.0.7 | lib | NVIDIA cuQuantum is an SDK of libraries and tools for quantum computing workflows. | +| [cuSPARSELt](https://docs.nvidia.com/cuda/cusparselt/index.html) | 0.7.1.0 | lib | NVIDIA cuSPARSELt is a high-performance CUDA library dedicated to general matrix-matrix operations in which at least one operand is a sparse matrix | +| [cuSPARSELt](https://docs.nvidia.com/cuda/cusparselt/index.html) | 0.7.1.0 | lib | NVIDIA cuSPARSELt is a high-performance CUDA library dedicated to general matrix-matrix operations in which at least one operand is a sparse matrix | +| [cuTENSOR](https://developer.nvidia.com/cutensor) | 2.0.2.5 | lib | The cuTENSOR Library is a GPU-accelerated tensor linear algebra library providing tensor contraction, reduction and elementwise operations. | +| [cuTENSOR](https://developer.nvidia.com/cutensor) | 2.0.2.5 | lib | The cuTENSOR Library is a GPU-accelerated tensor linear algebra library providing tensor contraction, reduction and elementwise operations. | +| [dask-labextension](https://github.com/dask/dask-labextension) | 7.0.0 | tools | This package provides a JupyterLab extension to manage Dask clusters, as well as embed Dask's dashboard plots directly into JupyterLab panes. | +| [dask-labextension](https://github.com/dask/dask-labextension) | 7.0.0 | tools | This package provides a JupyterLab extension to manage Dask clusters, as well as embed Dask's dashboard plots directly into JupyterLab panes. | +| [dask](https://dask.org/) | 2025.5.1 | data | Dask natively scales Python. Dask provides advanced parallelism for analytics, enabling performance at scale for the tools you love. | +| [dask](https://dask.org/) | 2025.5.1 | data | Dask natively scales Python. Dask provides advanced parallelism for analytics, enabling performance at scale for the tools you love. | +| [dill](https://pypi.org/project/dill/) | 0.4.0 | data | dill extends python's pickle module for serializing and de-serializing python objects to the majority of the built-in python types. Serialization is the process of converting an object to a byte stream, and the inverse of which is converting a byte stream back to on python object hierarchy. | +| [dill](https://pypi.org/project/dill/) | 0.4.0 | data | dill extends python's pickle module for serializing and de-serializing python objects to the majority of the built-in python types. Serialization is the process of converting an object to a byte stream, and the inverse of which is converting a byte stream back to on python object hierarchy. | +| [dlb](https://pm.bsc.es/dlb/) | 3.5.3 | lib | DLB is a dynamic library designed to speed up HPC hybrid applications (i.e., two levels of parallelism) by improving the load balance of the outer level of parallelism (e.g., MPI) by dynamically redistributing the computational resources at the inner level of parallelism (e.g., OpenMP). at run time. | +| [dlb](https://pm.bsc.es/dlb/) | 3.5.3 | lib | DLB is a dynamic library designed to speed up HPC hybrid applications (i.e., two levels of parallelism) by improving the load balance of the outer level of parallelism (e.g., MPI) by dynamically redistributing the computational resources at the inner level of parallelism (e.g., OpenMP). at run time. | +| [dlb](https://pm.bsc.es/dlb/) | 3.5.3 | lib | DLB is a dynamic library designed to speed up HPC hybrid applications (i.e., two levels of parallelism) by improving the load balance of the outer level of parallelism (e.g., MPI) by dynamically redistributing the computational resources at the inner level of parallelism (e.g., OpenMP). at run time. | +| [dlb](https://pm.bsc.es/dlb/) | 3.5.3 | lib | DLB is a dynamic library designed to speed up HPC hybrid applications (i.e., two levels of parallelism) by improving the load balance of the outer level of parallelism (e.g., MPI) by dynamically redistributing the computational resources at the inner level of parallelism (e.g., OpenMP). at run time. | +| [double-conversion](https://github.com/google/double-conversion) | 3.3.1 | lib | Efficient binary-decimal and decimal-binary conversion routines for IEEE doubles. | +| [double-conversion](https://github.com/google/double-conversion) | 3.3.1 | lib | Efficient binary-decimal and decimal-binary conversion routines for IEEE doubles. | +| [dtcmp](https://github.com/LLNL/dtcmp) | 1.1.5 | lib | The Datatype Comparison (DTCMP) Library provides pre-defined and user-defined comparison operations to compare the values of two items which can be arbitrary MPI datatypes. Using these comparison operations, the library provides various routines for manipulating data, which may be distributed over the processes of an MPI communicator. | +| [dtcmp](https://github.com/LLNL/dtcmp) | 1.1.5 | lib | The Datatype Comparison (DTCMP) Library provides pre-defined and user-defined comparison operations to compare the values of two items which can be arbitrary MPI datatypes. Using these comparison operations, the library provides various routines for manipulating data, which may be distributed over the processes of an MPI communicator. | +| [elbencho](https://github.com/breuner/elbencho) | 3.0-35 | tools | A distributed storage benchmark for files, objects & blocks with support for GPUs | +| [elbencho](https://github.com/breuner/elbencho) | 3.0-35 | tools | A distributed storage benchmark for files, objects & blocks with support for GPUs | +| [elfutils](https://elfutils.org/) | 0.193 | lib | The elfutils project provides libraries and tools for ELF files and DWARF data. | +| [elfutils](https://elfutils.org/) | 0.193 | lib | The elfutils project provides libraries and tools for ELF files and DWARF data. | +| [expat](https://libexpat.github.io) | 2.6.4 | tools | Expat is an XML parser library written in C. It is a stream-oriented parser in which an application registers handlers for things the parser might find in the XML document (like start tags). | +| [expat](https://libexpat.github.io) | 2.6.4 | tools | Expat is an XML parser library written in C. It is a stream-oriented parser in which an application registers handlers for things the parser might find in the XML document (like start tags). | +| [expecttest](https://github.com/ezyang/expecttest) | 0.2.1 | tools | This library implements expect tests (also known as "golden" tests). Expect tests are a method of writing tests where instead of hard-coding the expected output of a test, you run the test to get the output, and the test framework automatically populates the expected output. If the output of the test changes, you can rerun the test with the environment variable EXPECTTEST_ACCEPT=1 to automatically update the expected output. | +| [expecttest](https://github.com/ezyang/expecttest) | 0.2.1 | tools | This library implements expect tests (also known as "golden" tests). Expect tests are a method of writing tests where instead of hard-coding the expected output of a test, you run the test to get the output, and the test framework automatically populates the expected output. If the output of the test changes, you can rerun the test with the environment variable EXPECTTEST_ACCEPT=1 to automatically update the expected output. | +| [ffnvcodec](https://git.videolan.org/?p=ffmpeg/nv-codec-headers.git) | 13.0.19.0 | lib | FFmpeg nvidia headers. Adds support for nvenc and nvdec. Requires Nvidia GPU and drivers to be present (picked up dynamically). | +| [ffnvcodec](https://git.videolan.org/?p=ffmpeg/nv-codec-headers.git) | 13.0.19.0 | lib | FFmpeg nvidia headers. Adds support for nvenc and nvdec. Requires Nvidia GPU and drivers to be present (picked up dynamically). | +| [flatbuffers-python](https://github.com/google/flatbuffers/) | 25.2.10 | devel | Python Flatbuffers runtime library. | +| [flatbuffers-python](https://github.com/google/flatbuffers/) | 25.2.10 | devel | Python Flatbuffers runtime library. | +| [flatbuffers](https://github.com/google/flatbuffers/) | 25.2.10 | devel | FlatBuffers: Memory Efficient Serialization Library | +| [flatbuffers](https://github.com/google/flatbuffers/) | 25.2.10 | devel | FlatBuffers: Memory Efficient Serialization Library | +| [flex](http://flex.sourceforge.net/) | 2.6.4 | lang | Flex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner, sometimes called a tokenizer, is a program which recognizes lexical patterns in text. | +| [flex](http://flex.sourceforge.net/) | 2.6.4 | lang | Flex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner, sometimes called a tokenizer, is a program which recognizes lexical patterns in text. | +| [flex](https://github.com/westes/flex) | 2.6.4 | lang | Flex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner, sometimes called a tokenizer, is a program which recognizes lexical patterns in text. | +| [flex](https://github.com/westes/flex) | 2.6.4 | lang | Flex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner, sometimes called a tokenizer, is a program which recognizes lexical patterns in text. | +| [flit](https://github.com/pypa/flit) | 3.10.1 | tools | A simple packaging tool for simple packages. | +| [flit](https://github.com/pypa/flit) | 3.10.1 | tools | A simple packaging tool for simple packages. | +| [fontconfig](https://www.freedesktop.org/wiki/Software/fontconfig/) | 2.16.2 | vis | Fontconfig is a library designed to provide system-wide font configuration, customization and application access. | +| [fontconfig](https://www.freedesktop.org/wiki/Software/fontconfig/) | 2.16.2 | vis | Fontconfig is a library designed to provide system-wide font configuration, customization and application access. | +| [fonttools](https://python-markdown.github.io/) | 4.58.4 | devel | fontTools is a library for manipulating fonts, written in Python. The project includes the TTX tool, that can convert TrueType and OpenType fonts to and from an XML text format, which is also called TTX. It supports TrueType, OpenType, AFM and to an extent Type 1 and some Mac-specific formats. | +| [fonttools](https://python-markdown.github.io/) | 4.58.4 | devel | fontTools is a library for manipulating fonts, written in Python. The project includes the TTX tool, that can convert TrueType and OpenType fonts to and from an XML text format, which is also called TTX. It supports TrueType, OpenType, AFM and to an extent Type 1 and some Mac-specific formats. | +| [foss](https://easybuild.readthedocs.io/en/master/Common-toolchains.html#foss-toolchain) | 2025a | toolchain | GNU Compiler Collection (GCC) based compiler toolchain, including OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK. | +| [foss](https://easybuild.readthedocs.io/en/master/Common-toolchains.html#foss-toolchain) | 2025a | toolchain | GNU Compiler Collection (GCC) based compiler toolchain, including OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK. | +| [freetype](https://www.freetype.org) | 2.13.3 | vis | FreeType 2 is a software font engine that is designed to be small, efficient, highly customizable, and portable while capable of producing high-quality output (glyph images). It can be used in graphics libraries, display servers, font conversion tools, text image generation tools, and many other products as well. | +| [freetype](https://www.freetype.org) | 2.13.3 | vis | FreeType 2 is a software font engine that is designed to be small, efficient, highly customizable, and portable while capable of producing high-quality output (glyph images). It can be used in graphics libraries, display servers, font conversion tools, text image generation tools, and many other products as well. | +| [fuse-overlayfs](https://github.com/containers/fuse-overlayfs) | 1.16 | tools | fuse-overlayfs is a FUSE-based implementation of overlayfs, allowing unprivileged users to create overlay filesystems. Built against system fuse3-devel. | +| [fuse-overlayfs](https://github.com/containers/fuse-overlayfs) | 1.16 | tools | fuse-overlayfs is a FUSE-based implementation of overlayfs, allowing unprivileged users to create overlay filesystems. Built against system fuse3-devel. | +| [geopandas](https://geopandas.org) | 1.1.1 | geo | GeoPandas is a project to add support for geographic data to pandas objects. It currently implements GeoSeries and GeoDataFrame types which are subclasses of pandas.Series and pandas.DataFrame respectively. GeoPandas objects can act on shapely geometry objects and perform geometric operations. | +| [geopandas](https://geopandas.org) | 1.1.1 | geo | GeoPandas is a project to add support for geographic data to pandas objects. It currently implements GeoSeries and GeoDataFrame types which are subclasses of pandas.Series and pandas.DataFrame respectively. GeoPandas objects can act on shapely geometry objects and perform geometric operations. | +| [gettext](https://www.gnu.org/software/gettext/) | 0.22.5 | tools | GNU 'gettext' is an important step for the GNU Translation Project, as it is an asset on which we may build many other steps. This package offers to programmers, translators, and even users, a well integrated set of tools and documentation | +| [gettext](https://www.gnu.org/software/gettext/) | 0.22.5 | tools | GNU 'gettext' is an important step for the GNU Translation Project, as it is an asset on which we may build many other steps. This package offers to programmers, translators, and even users, a well integrated set of tools and documentation | +| [gettext](https://www.gnu.org/software/gettext/) | 0.24 | tools | GNU 'gettext' is an important step for the GNU Translation Project, as it is an asset on which we may build many other steps. This package offers to programmers, translators, and even users, a well integrated set of tools and documentation | +| [gettext](https://www.gnu.org/software/gettext/) | 0.24 | tools | GNU 'gettext' is an important step for the GNU Translation Project, as it is an asset on which we may build many other steps. This package offers to programmers, translators, and even users, a well integrated set of tools and documentation | +| [gettext](https://www.gnu.org/software/gettext/) | 0.25 | tools | GNU 'gettext' is an important step for the GNU Translation Project, as it is an asset on which we may build many other steps. This package offers to programmers, translators, and even users, a well integrated set of tools and documentation | +| [gettext](https://www.gnu.org/software/gettext/) | 0.25 | tools | GNU 'gettext' is an important step for the GNU Translation Project, as it is an asset on which we may build many other steps. This package offers to programmers, translators, and even users, a well integrated set of tools and documentation | +| [gfbf]((none)) | 2025a | toolchain | GNU Compiler Collection (GCC) based compiler toolchain, including FlexiBLAS (BLAS and LAPACK support) and (serial) FFTW. | +| [gfbf]((none)) | 2025a | toolchain | GNU Compiler Collection (GCC) based compiler toolchain, including FlexiBLAS (BLAS and LAPACK support) and (serial) FFTW. | +| [giflib](http://giflib.sourceforge.net/) | 5.2.2 | lib | giflib is a library for reading and writing gif images. It is API and ABI compatible with libungif which was in wide use while the LZW compression algorithm was patented. | +| [giflib](http://giflib.sourceforge.net/) | 5.2.2 | lib | giflib is a library for reading and writing gif images. It is API and ABI compatible with libungif which was in wide use while the LZW compression algorithm was patented. | +| [git-lfs](https://git-lfs.github.com) | 3.6.1 | tools | Git Large File Storage (LFS) replaces large files such as audio samples, videos, datasets, and graphics with text pointers inside Git, while storing the file contents on a remote server like GitHub.com | +| [git-lfs](https://git-lfs.github.com) | 3.6.1 | tools | Git Large File Storage (LFS) replaces large files such as audio samples, videos, datasets, and graphics with text pointers inside Git, while storing the file contents on a remote server like GitHub.com | +| [git](https://git-scm.com) | 2.49.0 | tools | Git is a free and open source distributed version control system designed to handle everything from small to very large projects with speed and efficiency. | +| [git](https://git-scm.com) | 2.49.0 | tools | Git is a free and open source distributed version control system designed to handle everything from small to very large projects with speed and efficiency. | +| [glslang-SPIRV](https://www.khronos.org/opengles/sdk/tools/Reference-Compiler/) | 15.3.0 | compiler | Glslang is the official reference compiler front end for the OpenGL ES and OpenGL shading languages. It implements a strict interpretation of the specifications for these languages. It is open and free for anyone to use, either from a command line or programmatically. The OpenGL and OpenGL ES working groups are committed to maintaining consistency between the reference compiler and the corresponding shading language specifications. | +| [glslang-SPIRV](https://www.khronos.org/opengles/sdk/tools/Reference-Compiler/) | 15.3.0 | compiler | Glslang is the official reference compiler front end for the OpenGL ES and OpenGL shading languages. It implements a strict interpretation of the specifications for these languages. It is open and free for anyone to use, either from a command line or programmatically. The OpenGL and OpenGL ES working groups are committed to maintaining consistency between the reference compiler and the corresponding shading language specifications. | +| [gmpy2](https://github.com/aleaxit/gmpy) | 2.2.0 | math | GMP/MPIR, MPFR, and MPC interface to Python 2.6+ and 3.x | +| [gmpy2](https://github.com/aleaxit/gmpy) | 2.2.0 | math | GMP/MPIR, MPFR, and MPC interface to Python 2.6+ and 3.x | +| [gnuplot](http://gnuplot.sourceforge.net) | 6.0.3 | vis | Portable interactive, function plotting utility | +| [gnuplot](http://gnuplot.sourceforge.net) | 6.0.3 | vis | Portable interactive, function plotting utility | +| [gocryptfs](https://github.com/rfjakob/gocryptfs/) | 2.6.1 | lib | Squashfuse lets you mount SquashFS archives in user-space. It supports almost all features of the SquashFS format, yet is still fast and memory-efficient. So that everyone can use it, squashfuse supports many different operating systems #and is available under a permissing license. SquashFS is an efficiently compressed, read-only storage format. Support for it has been built into the Linux kernel since 2009. It is very common on Live CDs and embedded Linux distributions. | +| [gocryptfs](https://github.com/rfjakob/gocryptfs/) | 2.6.1 | lib | Squashfuse lets you mount SquashFS archives in user-space. It supports almost all features of the SquashFS format, yet is still fast and memory-efficient. So that everyone can use it, squashfuse supports many different operating systems #and is available under a permissing license. SquashFS is an efficiently compressed, read-only storage format. Support for it has been built into the Linux kernel since 2009. It is very common on Live CDs and embedded Linux distributions. | +| [gompi]((none)) | 2025a | toolchain | GNU Compiler Collection (GCC) based compiler toolchain, including OpenMPI for MPI support. | +| [gompi]((none)) | 2025a | toolchain | GNU Compiler Collection (GCC) based compiler toolchain, including OpenMPI for MPI support. | +| [googleapis-python](https://googleapis.github.io) | 2025.03 | tools | Clients and tools for Google APIs in Python | +| [googleapis-python](https://googleapis.github.io) | 2025.03 | tools | Clients and tools for Google APIs in Python | +| [googlebenchmark](https://github.com/google/benchmark) | 1.9.4 | tools | Google's framework for writing C++ tests on a variety of platforms | +| [googlebenchmark](https://github.com/google/benchmark) | 1.9.4 | tools | Google's framework for writing C++ tests on a variety of platforms | +| [googletest](https://github.com/google/googletest) | 1.17.0 | tools | Google's framework for writing C++ tests on a variety of platforms | +| [googletest](https://github.com/google/googletest) | 1.17.0 | tools | Google's framework for writing C++ tests on a variety of platforms | +| [gperf](https://www.gnu.org/software/gperf/) | 3.3 | devel | GNU gperf is a perfect hash function generator. For a given list of strings, it produces a hash function and hash table, in form of C or C++ code, for looking up a value depending on the input string. The hash function is perfect, which means that the hash table has no collisions, and the hash table lookup needs a single string comparison only. | +| [gperf](https://www.gnu.org/software/gperf/) | 3.3 | devel | GNU gperf is a perfect hash function generator. For a given list of strings, it produces a hash function and hash table, in form of C or C++ code, for looking up a value depending on the input string. The hash function is perfect, which means that the hash table has no collisions, and the hash table lookup needs a single string comparison only. | +| [gperftools](https://github.com/gperftools/gperftools) | 2.16 | tools | gperftools is a collection of a high-performance multi-threaded malloc() implementation, plus some pretty nifty performance analysis tools. Includes TCMalloc, heap-checker, heap-profiler and cpu-profiler. | +| [gperftools](https://github.com/gperftools/gperftools) | 2.16 | tools | gperftools is a collection of a high-performance multi-threaded malloc() implementation, plus some pretty nifty performance analysis tools. Includes TCMalloc, heap-checker, heap-profiler and cpu-profiler. | +| [graphite2](https://scripts.sil.org/cms/scripts/page.php?site_id=projects&item_id=graphite_home) | 1.3.14 | lib | Graphite is a "smart font" system developed specifically to handle the complexities of lesser-known languages of the world. | +| [graphite2](https://scripts.sil.org/cms/scripts/page.php?site_id=projects&item_id=graphite_home) | 1.3.14 | lib | Graphite is a "smart font" system developed specifically to handle the complexities of lesser-known languages of the world. | +| [groff](https://www.gnu.org/software/groff) | 1.23.0 | tools | Groff (GNU troff) is a typesetting system that reads plain text mixed with formatting commands and produces formatted output. | +| [groff](https://www.gnu.org/software/groff) | 1.23.0 | tools | Groff (GNU troff) is a typesetting system that reads plain text mixed with formatting commands and produces formatted output. | +| [gzip](https://www.gnu.org/software/gzip/) | 1.13 | tools | gzip (GNU zip) is a popular data compression program as a replacement for compress | +| [gzip](https://www.gnu.org/software/gzip/) | 1.13 | tools | gzip (GNU zip) is a popular data compression program as a replacement for compress | +| [h5py](https://www.h5py.org/) | 3.14.0 | data | HDF5 for Python (h5py) is a general-purpose Python interface to the Hierarchical Data Format library, version 5. HDF5 is a versatile, mature scientific software library designed for the fast, flexible storage of enormous amounts of data. | +| [h5py](https://www.h5py.org/) | 3.14.0 | data | HDF5 for Python (h5py) is a general-purpose Python interface to the Hierarchical Data Format library, version 5. HDF5 is a versatile, mature scientific software library designed for the fast, flexible storage of enormous amounts of data. | +| [hatch-jupyter-builder](https://hatch-jupyter-builder.readthedocs.io) | 0.9.1 | tools | Hatch Jupyter Builder is a plugin for the hatchling Python build backend. It is primarily targeted for package authors who are providing JavaScript as part of their Python packages. Typical use cases are Jupyter Lab Extensions and Jupyter Widgets. | +| [hatch-jupyter-builder](https://hatch-jupyter-builder.readthedocs.io) | 0.9.1 | tools | Hatch Jupyter Builder is a plugin for the hatchling Python build backend. It is primarily targeted for package authors who are providing JavaScript as part of their Python packages. Typical use cases are Jupyter Lab Extensions and Jupyter Widgets. | +| [hatchling](https://hatch.pypa.io) | 1.27.0 | tools | Extensible, standards compliant build backend used by Hatch, a modern, extensible Python project manager. | +| [hatchling](https://hatch.pypa.io) | 1.27.0 | tools | Extensible, standards compliant build backend used by Hatch, a modern, extensible Python project manager. | +| [help2man](https://www.gnu.org/software/help2man/) | 1.49.3 | tools | help2man produces simple manual pages from the '--help' and '--version' output of other commands. | +| [help2man](https://www.gnu.org/software/help2man/) | 1.49.3 | tools | help2man produces simple manual pages from the '--help' and '--version' output of other commands. | +| [hwloc-CUDA](https://www.open-mpi.org/projects/hwloc/) | 2.11.2 | system | The Portable Hardware Locality (hwloc) software package provides a portable abstraction (across OS, versions, architectures, ...) of the hierarchical topology of modern architectures, including NUMA memory nodes, sockets, shared caches, cores and simultaneous multithreading. It also gathers various system attributes such as cache and memory information as well as the locality of I/O devices such as network interfaces, InfiniBand HCAs or GPUs. It primarily aims at helping applications with gathering information about modern computing hardware so as to exploit it accordingly and efficiently. This provides the CUDA and NVML plugins for hwloc | +| [hwloc-CUDA](https://www.open-mpi.org/projects/hwloc/) | 2.11.2 | system | The Portable Hardware Locality (hwloc) software package provides a portable abstraction (across OS, versions, architectures, ...) of the hierarchical topology of modern architectures, including NUMA memory nodes, sockets, shared caches, cores and simultaneous multithreading. It also gathers various system attributes such as cache and memory information as well as the locality of I/O devices such as network interfaces, InfiniBand HCAs or GPUs. It primarily aims at helping applications with gathering information about modern computing hardware so as to exploit it accordingly and efficiently. This provides the CUDA and NVML plugins for hwloc | +| [hwloc](https://www.open-mpi.org/projects/hwloc/) | 2.11.2 | system | The Portable Hardware Locality (hwloc) software package provides a portable abstraction (across OS, versions, architectures, ...) of the hierarchical topology of modern architectures, including NUMA memory nodes, sockets, shared caches, cores and simultaneous multithreading. It also gathers various system attributes such as cache and memory information as well as the locality of I/O devices such as network interfaces, InfiniBand HCAs or GPUs. It primarily aims at helping applications with gathering information about modern computing hardware so as to exploit it accordingly and efficiently. | +| [hwloc](https://www.open-mpi.org/projects/hwloc/) | 2.11.2 | system | The Portable Hardware Locality (hwloc) software package provides a portable abstraction (across OS, versions, architectures, ...) of the hierarchical topology of modern architectures, including NUMA memory nodes, sockets, shared caches, cores and simultaneous multithreading. It also gathers various system attributes such as cache and memory information as well as the locality of I/O devices such as network interfaces, InfiniBand HCAs or GPUs. It primarily aims at helping applications with gathering information about modern computing hardware so as to exploit it accordingly and efficiently. | +| [hypothesis](https://github.com/HypothesisWorks/hypothesis) | 6.133.2 | tools | Hypothesis is an advanced testing library for Python. It lets you write tests which are parametrized by a source of examples, and then generates simple and comprehensible examples that make your tests fail. This lets you find more bugs in your code with less work. | +| [hypothesis](https://github.com/HypothesisWorks/hypothesis) | 6.133.2 | tools | Hypothesis is an advanced testing library for Python. It lets you write tests which are parametrized by a source of examples, and then generates simple and comprehensible examples that make your tests fail. This lets you find more bugs in your code with less work. | +| [ifpgasdk](https://www.intel.com/content/www/us/en/software/programmable/sdk-for-opencl/overview.html) | 20.4 | tools | Intel FPGA SDK for OpenCL software technology is a development environment that enables software developers to accelerate their applications by targeting heterogeneous platforms with Intel CPUs and FPGAs. This environment combines Intel’s state-of-the-art software development frameworks and compiler technology with the revolutionary, new Intel® Quartus® Prime Software to deliver next generation development environment that abstracts FPGA details while delivering optimized results. Intel® FPGA SDK for OpenCL™ software technology enables you to fully leverage the unique capabilities of FPGAs to deliver acceleration performance with power efficiency and low latency. | +| [ifpgasdk](https://www.intel.com/content/www/us/en/software/programmable/sdk-for-opencl/overview.html) | 20.4 | tools | Intel FPGA SDK for OpenCL software technology is a development environment that enables software developers to accelerate their applications by targeting heterogeneous platforms with Intel CPUs and FPGAs. This environment combines Intel’s state-of-the-art software development frameworks and compiler technology with the revolutionary, new Intel® Quartus® Prime Software to deliver next generation development environment that abstracts FPGA details while delivering optimized results. Intel® FPGA SDK for OpenCL™ software technology enables you to fully leverage the unique capabilities of FPGAs to deliver acceleration performance with power efficiency and low latency. | +| [iimpi](https://software.intel.com/parallel-studio-xe) | 2025a | toolchain | Intel C/C++ and Fortran compilers, alongside Intel MPI. | +| [iimpi](https://software.intel.com/parallel-studio-xe) | 2025a | toolchain | Intel C/C++ and Fortran compilers, alongside Intel MPI. | +| [imageio](https://imageio.github.io) | 2.37.0 | vis | Imageio is a Python library that provides an easy interface to read and write a wide range of image data, including animated images, video, volumetric data, and scientific formats. | +| [imageio](https://imageio.github.io) | 2.37.0 | vis | Imageio is a Python library that provides an easy interface to read and write a wide range of image data, including animated images, video, volumetric data, and scientific formats. | +| [imkl-FFTW](https://software.intel.com/content/www/us/en/develop/tools/oneapi/components/onemkl.html) | 2025.1.0 | numlib | FFTW interfaces using Intel oneAPI Math Kernel Library | +| [imkl-FFTW](https://software.intel.com/content/www/us/en/develop/tools/oneapi/components/onemkl.html) | 2025.1.0 | numlib | FFTW interfaces using Intel oneAPI Math Kernel Library | +| [imkl](https://software.intel.com/content/www/us/en/develop/tools/oneapi/components/onemkl.html) | 2025.1.0 | numlib | Intel oneAPI Math Kernel Library | +| [imkl](https://software.intel.com/content/www/us/en/develop/tools/oneapi/components/onemkl.html) | 2025.1.0 | numlib | Intel oneAPI Math Kernel Library | +| [impi](https://software.intel.com/content/www/us/en/develop/tools/mpi-library.html) | 2021.15.0 | mpi | Intel MPI Library, compatible with MPICH ABI | +| [impi](https://software.intel.com/content/www/us/en/develop/tools/mpi-library.html) | 2021.15.0 | mpi | Intel MPI Library, compatible with MPICH ABI | +| [intel-compilers](https://software.intel.com/content/www/us/en/develop/tools/oneapi/hpc-toolkit.html) | 2025.1.1 | compiler | Intel C, C++ & Fortran compilers | +| [intel-compilers](https://software.intel.com/content/www/us/en/develop/tools/oneapi/hpc-toolkit.html) | 2025.1.1 | compiler | Intel C, C++ & Fortran compilers | +| [intel-oneapi](https://software.intel.com/content/www/us/en/develop/tools/oneapi/hpc-toolkit.html) | 2024.2.1 | compiler | Intel C, C++ & Fortran compilers (classic and oneAPI) | +| [intel-oneapi](https://software.intel.com/content/www/us/en/develop/tools/oneapi/hpc-toolkit.html) | 2024.2.1 | compiler | Intel C, C++ & Fortran compilers (classic and oneAPI) | +| [intel](https://docs.easybuild.io/common-toolchains/#common_toolchains_overview_intel) | 2025a | toolchain | Compiler toolchain including Intel compilers, Intel MPI and Intel Math Kernel Library (MKL). | +| [intel](https://docs.easybuild.io/common-toolchains/#common_toolchains_overview_intel) | 2025a | toolchain | Compiler toolchain including Intel compilers, Intel MPI and Intel Math Kernel Library (MKL). | +| [intltool](https://freedesktop.org/wiki/Software/intltool/) | 0.51.0 | devel | intltool is a set of tools to centralize translation of many different file formats using GNU gettext-compatible PO files. | +| [intltool](https://freedesktop.org/wiki/Software/intltool/) | 0.51.0 | devel | intltool is a set of tools to centralize translation of many different file formats using GNU gettext-compatible PO files. | +| [iperf](https://software.es.net/iperf) | 3.17.1 | tools | iperf is a tool for active measurements of the maximum achievable bandwidth on IP networks. | +| [iperf](https://software.es.net/iperf) | 3.17.1 | tools | iperf is a tool for active measurements of the maximum achievable bandwidth on IP networks. | +| [jbigkit](https://www.cl.cam.ac.uk/~mgk25/jbigkit/) | 2.1 | vis | JBIG-KIT is a software implementation of the JBIG1 data compression standard (ITU-T T.82), which was designed for bi-level image data, such as scanned documents. | +| [jbigkit](https://www.cl.cam.ac.uk/~mgk25/jbigkit/) | 2.1 | vis | JBIG-KIT is a software implementation of the JBIG1 data compression standard (ITU-T T.82), which was designed for bi-level image data, such as scanned documents. | +| [jedi](https://github.com/davidhalter/jedi) | 0.19.1 | tools | Jedi - an awesome autocompletion, static analysis and refactoring library for Python. | +| [jedi](https://github.com/davidhalter/jedi) | 0.19.1 | tools | Jedi - an awesome autocompletion, static analysis and refactoring library for Python. | +| [jemalloc](https://jemalloc.net) | 5.3.0 | lib | jemalloc is a general purpose malloc(3) implementation that emphasizes fragmentation avoidance and scalable concurrency support. | +| [jemalloc](https://jemalloc.net) | 5.3.0 | lib | jemalloc is a general purpose malloc(3) implementation that emphasizes fragmentation avoidance and scalable concurrency support. | +| [jq](https://jqlang.org/) | 1.8.1 | tools | jq is a lightweight and flexible command-line JSON processor. | +| [jq](https://jqlang.org/) | 1.8.1 | tools | jq is a lightweight and flexible command-line JSON processor. | +| [json-c](https://github.com/json-c/json-c) | 0.18 | lib | JSON-C implements a reference counting object model that allows you to easily construct JSON objects in C, output them as JSON formatted strings and parse JSON formatted strings back into the C representation of JSON objects. | +| [json-c](https://github.com/json-c/json-c) | 0.18 | lib | JSON-C implements a reference counting object model that allows you to easily construct JSON objects in C, output them as JSON formatted strings and parse JSON formatted strings back into the C representation of JSON objects. | +| [jupyter-lsp](https://jupyter.org/) | 2.3.0 | tools | The Jupyter Server provides the backend (i.e. the core services, APIs, and REST endpoints) for Jupyter web applications like Jupyter notebook, JupyterLab, and Voila. | +| [jupyter-lsp](https://jupyter.org/) | 2.3.0 | tools | The Jupyter Server provides the backend (i.e. the core services, APIs, and REST endpoints) for Jupyter web applications like Jupyter notebook, JupyterLab, and Voila. | +| [jupyter-matlab-proxy](https://github.com/mathworks/jupyter-matlab-proxy) | 0.17.5 | math | MATLAB Integration for Jupyter | +| [jupyter-matlab-proxy](https://github.com/mathworks/jupyter-matlab-proxy) | 0.17.5 | math | MATLAB Integration for Jupyter | +| [jupyter-resource-usage](https://github.com/jupyter-server/jupyter-resource-usage) | 1.1.1 | tools | Jupyter Notebook Extension for monitoring your own Resource Usage (memory and/or CPU) | +| [jupyter-resource-usage](https://github.com/jupyter-server/jupyter-resource-usage) | 1.1.1 | tools | Jupyter Notebook Extension for monitoring your own Resource Usage (memory and/or CPU) | +| [jupyter-server-proxy](https://github.com/jupyterhub/jupyter-server-proxy) | 4.4.0 | tools | Jupyter Server Proxy lets you run arbitrary external processes (such as RStudio, Shiny Server, Syncthing, PostgreSQL, Code Server, etc) alongside your notebook server and provide authenticated web access to them using a path like /rstudio next to others like /lab. Alongside the python package that provides the main functionality, the JupyterLab extension (@jupyterlab/server-proxy) provides buttons in the JupyterLab launcher window to get to RStudio for example. | +| [jupyter-server-proxy](https://github.com/jupyterhub/jupyter-server-proxy) | 4.4.0 | tools | Jupyter Server Proxy lets you run arbitrary external processes (such as RStudio, Shiny Server, Syncthing, PostgreSQL, Code Server, etc) alongside your notebook server and provide authenticated web access to them using a path like /rstudio next to others like /lab. Alongside the python package that provides the main functionality, the JupyterLab extension (@jupyterlab/server-proxy) provides buttons in the JupyterLab launcher window to get to RStudio for example. | +| [jupyter-server](https://jupyter.org/) | 2.16.0 | tools | The Jupyter Server provides the backend (i.e. the core services, APIs, and REST endpoints) for Jupyter web applications like Jupyter notebook, JupyterLab, and Voila. | +| [jupyter-server](https://jupyter.org/) | 2.16.0 | tools | The Jupyter Server provides the backend (i.e. the core services, APIs, and REST endpoints) for Jupyter web applications like Jupyter notebook, JupyterLab, and Voila. | +| [jupyterlab-lsp](https://jupyter.org/) | 5.2.0 | tools | The Jupyter Server provides the backend (i.e. the core services, APIs, and REST endpoints) for Jupyter web applications like Jupyter notebook, JupyterLab, and Voila. | +| [jupyterlab-lsp](https://jupyter.org/) | 5.2.0 | tools | The Jupyter Server provides the backend (i.e. the core services, APIs, and REST endpoints) for Jupyter web applications like Jupyter notebook, JupyterLab, and Voila. | +| [jupyterlmod](https://github.com/cmd-ntrf/jupyter-lmod) | 5.2.2 | tools | Jupyter interactive notebook server extension that allows users to interact with environment modules before launching kernels. The extension uses Lmod's Python interface to accomplish module-related tasks like loading, unloading, saving collections, etc. | +| [jupyterlmod](https://github.com/cmd-ntrf/jupyter-lmod) | 5.2.2 | tools | Jupyter interactive notebook server extension that allows users to interact with environment modules before launching kernels. The extension uses Lmod's Python interface to accomplish module-related tasks like loading, unloading, saving collections, etc. | +| [jupyterlmod](https://github.com/cmd-ntrf/jupyter-lmod) | 5.3.0 | tools | Jupyter interactive notebook server extension that allows users to interact with environment modules before launching kernels. The extension uses Lmod's Python interface to accomplish module-related tasks like loading, unloading, saving collections, etc. | +| [jupyterlmod](https://github.com/cmd-ntrf/jupyter-lmod) | 5.3.0 | tools | Jupyter interactive notebook server extension that allows users to interact with environment modules before launching kernels. The extension uses Lmod's Python interface to accomplish module-related tasks like loading, unloading, saving collections, etc. | +| [jxrlib](https://github.com/4creators/jxrlib) | 2019.10.9 | lib | Open source implementation of jpegxr | +| [jxrlib](https://github.com/4creators/jxrlib) | 2019.10.9 | lib | Open source implementation of jpegxr | +| [libGLU](https://gitlab.freedesktop.org/mesa/glu) | 9.0.3 | vis | The OpenGL Utility Library (GLU) is a computer graphics library for OpenGL. | +| [libGLU](https://gitlab.freedesktop.org/mesa/glu) | 9.0.3 | vis | The OpenGL Utility Library (GLU) is a computer graphics library for OpenGL. | +| [libaio](https://pagure.io/libaio) | 0.3.113 | lib | Asynchronous input/output library that uses the kernels native interface. | +| [libaio](https://pagure.io/libaio) | 0.3.113 | lib | Asynchronous input/output library that uses the kernels native interface. | +| [libarchive](https://www.libarchive.org/) | 3.7.7 | tools | Multi-format archive and compression library | +| [libarchive](https://www.libarchive.org/) | 3.7.7 | tools | Multi-format archive and compression library | +| [libcerf](https://jugit.fz-juelich.de/mlz/libcerf) | 3.0 | math | libcerf is a self-contained numeric library that provides an efficient and accurate implementation of complex error functions, along with Dawson, Faddeeva, and Voigt functions. | +| [libcerf](https://jugit.fz-juelich.de/mlz/libcerf) | 3.0 | math | libcerf is a self-contained numeric library that provides an efficient and accurate implementation of complex error functions, along with Dawson, Faddeeva, and Voigt functions. | +| [libcircle](https://github.com/hpc/libcircle/) | 0.3 | lib | An API to provide an efficient distributed queue on a cluster. libcircle is an API for distributing embarrassingly parallel workloads using self-stabilization. | +| [libcircle](https://github.com/hpc/libcircle/) | 0.3 | lib | An API to provide an efficient distributed queue on a cluster. libcircle is an API for distributing embarrassingly parallel workloads using self-stabilization. | +| [libcroco](https://gitlab.gnome.org/Archive/libcroco) | 0.6.13 | lib | Libcroco is a standalone css2 parsing and manipulation library. | +| [libcroco](https://gitlab.gnome.org/Archive/libcroco) | 0.6.13 | lib | Libcroco is a standalone css2 parsing and manipulation library. | +| [libde265](https://github.com/strukturag/libde265) | 1.0.16 | tools | libde265 is an open source implementation of the h.265 video codec | +| [libde265](https://github.com/strukturag/libde265) | 1.0.16 | tools | libde265 is an open source implementation of the h.265 video codec | +| [libdeflate](https://github.com/ebiggers/libdeflate) | 1.24 | system | Heavily optimized library for DEFLATE/zlib/gzip compression and decompression. | +| [libdeflate](https://github.com/ebiggers/libdeflate) | 1.24 | system | Heavily optimized library for DEFLATE/zlib/gzip compression and decompression. | +| [libdrm](https://dri.freedesktop.org) | 2.4.125 | lib | Direct Rendering Manager runtime library. | +| [libdrm](https://dri.freedesktop.org) | 2.4.125 | lib | Direct Rendering Manager runtime library. | +| [libepoxy](https://github.com/anholt/libepoxy) | 1.5.10 | lib | Epoxy is a library for handling OpenGL function pointer management for you | +| [libepoxy](https://github.com/anholt/libepoxy) | 1.5.10 | lib | Epoxy is a library for handling OpenGL function pointer management for you | +| [libevent](https://libevent.org/) | 2.1.12 | lib | The libevent API provides a mechanism to execute a callback function when a specific event occurs on a file descriptor or after a timeout has been reached. Furthermore, libevent also support callbacks due to signals or regular timeouts. | +| [libevent](https://libevent.org/) | 2.1.12 | lib | The libevent API provides a mechanism to execute a callback function when a specific event occurs on a file descriptor or after a timeout has been reached. Furthermore, libevent also support callbacks due to signals or regular timeouts. | +| [libfabric](https://ofiwg.github.io/libfabric/) | 2.0.0 | lib | Libfabric is a core component of OFI. It is the library that defines and exports the user-space API of OFI, and is typically the only software that applications deal with directly. It works in conjunction with provider libraries, which are often integrated directly into libfabric. | +| [libfabric](https://ofiwg.github.io/libfabric/) | 2.0.0 | lib | Libfabric is a core component of OFI. It is the library that defines and exports the user-space API of OFI, and is typically the only software that applications deal with directly. It works in conjunction with provider libraries, which are often integrated directly into libfabric. | +| [libffi](https://sourceware.org/libffi/) | 3.4.5 | lib | The libffi library provides a portable, high level programming interface to various calling conventions. This allows a programmer to call any function specified by a call interface description at run-time. | +| [libffi](https://sourceware.org/libffi/) | 3.4.5 | lib | The libffi library provides a portable, high level programming interface to various calling conventions. This allows a programmer to call any function specified by a call interface description at run-time. | +| [libgd](https://libgd.github.io) | 2.3.3 | lib | GD is an open source code library for the dynamic creation of images by programmers. | +| [libgd](https://libgd.github.io) | 2.3.3 | lib | GD is an open source code library for the dynamic creation of images by programmers. | +| [libgeotiff](https://trac.osgeo.org/geotiff/wiki/WikiStart) | 1.7.4 | lib | Library for reading and writing coordinate system information from/to GeoTIFF files | +| [libgeotiff](https://trac.osgeo.org/geotiff/wiki/WikiStart) | 1.7.4 | lib | Library for reading and writing coordinate system information from/to GeoTIFF files | +| [libgit2](https://libgit2.org/) | 1.9.1 | devel | libgit2 is a portable, pure C implementation of the Git core methods provided as a re-entrant linkable library with a solid API, allowing you to write native speed custom Git applications in any language which supports C bindings. | +| [libgit2](https://libgit2.org/) | 1.9.1 | devel | libgit2 is a portable, pure C implementation of the Git core methods provided as a re-entrant linkable library with a solid API, allowing you to write native speed custom Git applications in any language which supports C bindings. | +| [libglvnd](https://gitlab.freedesktop.org/glvnd/libglvnd) | 1.7.0 | lib | libglvnd is a vendor-neutral dispatch layer for arbitrating OpenGL API calls between multiple vendors. | +| [libglvnd](https://gitlab.freedesktop.org/glvnd/libglvnd) | 1.7.0 | lib | libglvnd is a vendor-neutral dispatch layer for arbitrating OpenGL API calls between multiple vendors. | +| [libheif](https://github.com/strukturag/libheif) | 1.19.8 | tools | libheif is an HEIF and AVIF file format decoder and encoder | +| [libheif](https://github.com/strukturag/libheif) | 1.19.8 | tools | libheif is an HEIF and AVIF file format decoder and encoder | +| [libiconv](https://www.gnu.org/software/libiconv) | 1.18 | lib | Libiconv converts from one character encoding to another through Unicode conversion | +| [libiconv](https://www.gnu.org/software/libiconv) | 1.18 | lib | Libiconv converts from one character encoding to another through Unicode conversion | +| [libidn2](http://www.gnu.org/software/libidn2) | 2.3.7 | lib | Libidn2 implements the revised algorithm for internationalized domain names called IDNA2008/TR46. | +| [libidn2](http://www.gnu.org/software/libidn2) | 2.3.7 | lib | Libidn2 implements the revised algorithm for internationalized domain names called IDNA2008/TR46. | +| [libjpeg-turbo](https://libjpeg-turbo.org/) | 3.1.0 | lib | libjpeg-turbo is a fork of the original IJG libjpeg which uses SIMD to accelerate baseline JPEG compression and decompression. libjpeg is a library that implements JPEG image encoding, decoding and transcoding. | +| [libjpeg-turbo](https://libjpeg-turbo.org/) | 3.1.0 | lib | libjpeg-turbo is a fork of the original IJG libjpeg which uses SIMD to accelerate baseline JPEG compression and decompression. libjpeg is a library that implements JPEG image encoding, decoding and transcoding. | +| [libnsl](https://github.com/thkukuk/libnsl) | 2.0.1 | devel | The libnsl package contains the public client interface for NIS(YP). | +| [libnsl](https://github.com/thkukuk/libnsl) | 2.0.1 | devel | The libnsl package contains the public client interface for NIS(YP). | +| [libpciaccess](https://cgit.freedesktop.org/xorg/lib/libpciaccess/) | 0.18.1 | system | Generic PCI access library. | +| [libpciaccess](https://cgit.freedesktop.org/xorg/lib/libpciaccess/) | 0.18.1 | system | Generic PCI access library. | +| [libpng](https://www.libpng.org/pub/png/libpng.html) | 1.6.48 | lib | libpng is the official PNG reference library | +| [libpng](https://www.libpng.org/pub/png/libpng.html) | 1.6.48 | lib | libpng is the official PNG reference library | +| [libpsl](https://rockdaboot.github.io/libpsl) | 0.21.5 | lib | C library for the Public Suffix List | +| [libpsl](https://rockdaboot.github.io/libpsl) | 0.21.5 | lib | C library for the Public Suffix List | +| [libreadline](https://tiswww.case.edu/php/chet/readline/rltop.html) | 8.2 | lib | The GNU Readline library provides a set of functions for use by applications that allow users to edit command lines as they are typed in. Both Emacs and vi editing modes are available. The Readline library includes additional functions to maintain a list of previously-entered command lines, to recall and perhaps reedit those lines, and perform csh-like history expansion on previous commands. | +| [libreadline](https://tiswww.case.edu/php/chet/readline/rltop.html) | 8.2 | lib | The GNU Readline library provides a set of functions for use by applications that allow users to edit command lines as they are typed in. Both Emacs and vi editing modes are available. The Readline library includes additional functions to maintain a list of previously-entered command lines, to recall and perhaps reedit those lines, and perform csh-like history expansion on previous commands. | +| [librsvg](https://wiki.gnome.org/Projects/LibRsvg) | 2.61.0 | lib | Librsvg is a library to render SVG files using cairo. | +| [librsvg](https://wiki.gnome.org/Projects/LibRsvg) | 2.61.0 | lib | Librsvg is a library to render SVG files using cairo. | +| [libsodium](https://doc.libsodium.org/) | 1.0.20 | lib | Sodium is a modern, easy-to-use software library for encryption, decryption, signatures, password hashing and more. | +| [libsodium](https://doc.libsodium.org/) | 1.0.20 | lib | Sodium is a modern, easy-to-use software library for encryption, decryption, signatures, password hashing and more. | +| [libtirpc](https://sourceforge.net/projects/libtirpc/) | 1.3.6 | lib | Libtirpc is a port of Suns Transport-Independent RPC library to Linux. | +| [libtirpc](https://sourceforge.net/projects/libtirpc/) | 1.3.6 | lib | Libtirpc is a port of Suns Transport-Independent RPC library to Linux. | +| [libtool](https://www.gnu.org/software/libtool) | 2.5.4 | lib | GNU libtool is a generic library support script. Libtool hides the complexity of using shared libraries behind a consistent, portable interface. | +| [libtool](https://www.gnu.org/software/libtool) | 2.5.4 | lib | GNU libtool is a generic library support script. Libtool hides the complexity of using shared libraries behind a consistent, portable interface. | +| [libunistring](https://www.gnu.org/software/libunistring/) | 1.3 | lib | This library provides functions for manipulating Unicode strings and for manipulating C strings according to the Unicode standard. | +| [libunistring](https://www.gnu.org/software/libunistring/) | 1.3 | lib | This library provides functions for manipulating Unicode strings and for manipulating C strings according to the Unicode standard. | +| [libunwind](https://www.nongnu.org/libunwind/) | 1.8.1 | lib | The primary goal of libunwind is to define a portable and efficient C programming interface (API) to determine the call-chain of a program. The API additionally provides the means to manipulate the preserved (callee-saved) state of each call-frame and to resume execution at any point in the call-chain (non-local goto). The API supports both local (same-process) and remote (across-process) operation. As such, the API is useful in a number of applications | +| [libunwind](https://www.nongnu.org/libunwind/) | 1.8.1 | lib | The primary goal of libunwind is to define a portable and efficient C programming interface (API) to determine the call-chain of a program. The API additionally provides the means to manipulate the preserved (callee-saved) state of each call-frame and to resume execution at any point in the call-chain (non-local goto). The API supports both local (same-process) and remote (across-process) operation. As such, the API is useful in a number of applications | +| [libvori](https://brehm-research.de/libvori.php) | 220621 | lib | C++ library implementing the Voronoi integration as well as the compressed bqb file format. The present version of libvori is a very early development version, which is hard-coded to work with the CP2k program package. | +| [libvori](https://brehm-research.de/libvori.php) | 220621 | lib | C++ library implementing the Voronoi integration as well as the compressed bqb file format. The present version of libvori is a very early development version, which is hard-coded to work with the CP2k program package. | +| [libwebp](https://developers.google.com/speed/webp/) | 1.5.0 | lib | WebP is a modern image format that provides superior lossless and lossy compression for images on the web. Using WebP, webmasters and web developers can create smaller, richer images that make the web faster. | +| [libwebp](https://developers.google.com/speed/webp/) | 1.5.0 | lib | WebP is a modern image format that provides superior lossless and lossy compression for images on the web. Using WebP, webmasters and web developers can create smaller, richer images that make the web faster. | +| [libxc](https://libxc.gitlab.io) | 7.0.0 | chem | Libxc is a library of exchange-correlation functionals for density-functional theory. The aim is to provide a portable, well tested and reliable set of exchange and correlation functionals. | +| [libxc](https://libxc.gitlab.io) | 7.0.0 | chem | Libxc is a library of exchange-correlation functionals for density-functional theory. The aim is to provide a portable, well tested and reliable set of exchange and correlation functionals. | +| [libxml2](https://gitlab.gnome.org/GNOME/libxml2/-/wikis) | 2.13.4 | lib | Libxml2 is the XML C parser and toolchain developed for the Gnome project (but usable outside of the Gnome platform). | +| [libxml2](https://gitlab.gnome.org/GNOME/libxml2/-/wikis) | 2.13.4 | lib | Libxml2 is the XML C parser and toolchain developed for the Gnome project (but usable outside of the Gnome platform). | +| [libxslt](https://gitlab.gnome.org/GNOME/libxslt/-/wikis) | 1.1.42 | lib | Libxslt is the XSLT C library developed for the GNOME project (but usable outside of the Gnome platform). | +| [libxslt](https://gitlab.gnome.org/GNOME/libxslt/-/wikis) | 1.1.42 | lib | Libxslt is the XSLT C library developed for the GNOME project (but usable outside of the Gnome platform). | +| [libxsmm](https://github.com/libxsmm/libxsmm) | 1.17 | math | LIBXSMM is a library for small dense and small sparse matrix-matrix multiplications targeting Intel Architecture (x86). | +| [libxsmm](https://github.com/libxsmm/libxsmm) | 1.17 | math | LIBXSMM is a library for small dense and small sparse matrix-matrix multiplications targeting Intel Architecture (x86). | +| [libyaml](https://pyyaml.org/wiki/LibYAML) | 0.2.5 | lib | LibYAML is a YAML parser and emitter written in C. | +| [libyaml](https://pyyaml.org/wiki/LibYAML) | 0.2.5 | lib | LibYAML is a YAML parser and emitter written in C. | +| [likwid](https://github.com/RRZE-HPC/likwid) | 5.4.1 | tools | Likwid stands for Like I knew what I am doing. This project contributes easy to use command line tools for Linux to support programmers in developing high performance multi threaded programs. | +| [likwid](https://github.com/RRZE-HPC/likwid) | 5.4.1 | tools | Likwid stands for Like I knew what I am doing. This project contributes easy to use command line tools for Linux to support programmers in developing high performance multi threaded programs. | +| [lit](https://llvm.org/docs/CommandGuide/lit.html) | 18.1.8 | tools | lit is a portable tool for executing LLVM and Clang style test suites, summarizing their results, and providing indication of failures. | +| [lit](https://llvm.org/docs/CommandGuide/lit.html) | 18.1.8 | tools | lit is a portable tool for executing LLVM and Clang style test suites, summarizing their results, and providing indication of failures. | +| [lwgrp](https://github.com/LLNL/lwgrp) | 1.0.6 | lib | The light-weight group library defines data structures and collective operations to group MPI processes as an ordered set. Such groups are useful as substitutes for MPI communicators when the overhead of communicator creation is too costly. For example, certain sorting algorithms recursively divide processes into subgroups as the sort algorithm progresses. These groups may be different with each invocation, so that it is inefficient to create and destroy communicators during the sort routine. | +| [lwgrp](https://github.com/LLNL/lwgrp) | 1.0.6 | lib | The light-weight group library defines data structures and collective operations to group MPI processes as an ordered set. Such groups are useful as substitutes for MPI communicators when the overhead of communicator creation is too costly. For example, certain sorting algorithms recursively divide processes into subgroups as the sort algorithm progresses. These groups may be different with each invocation, so that it is inefficient to create and destroy communicators during the sort routine. | +| [lxml](https://lxml.de/) | 5.3.0 | lib | The lxml XML toolkit is a Pythonic binding for the C libraries libxml2 and libxslt. | +| [lxml](https://lxml.de/) | 5.3.0 | lib | The lxml XML toolkit is a Pythonic binding for the C libraries libxml2 and libxslt. | +| [lz4](https://lz4.github.io/lz4/) | 1.10.0 | lib | LZ4 is lossless compression algorithm, providing compression speed at 400 MB/s per core. It features an extremely fast decoder, with speed in multiple GB/s per core. | +| [lz4](https://lz4.github.io/lz4/) | 1.10.0 | lib | LZ4 is lossless compression algorithm, providing compression speed at 400 MB/s per core. It features an extremely fast decoder, with speed in multiple GB/s per core. | +| [magma](https://icl.cs.utk.edu/magma/) | 2.9.0 | math | The MAGMA project aims to develop a dense linear algebra library similar to LAPACK but for heterogeneous/hybrid architectures, starting with current Multicore+GPU systems. | +| [make](https://www.gnu.org/software/make/make.html) | 4.4.1 | devel | GNU version of make utility | +| [make](https://www.gnu.org/software/make/make.html) | 4.4.1 | devel | GNU version of make utility | +| [makeinfo](https://www.gnu.org/software/texinfo/) | 7.2 | devel | makeinfo is part of the Texinfo project, the official documentation format of the GNU project. | +| [makeinfo](https://www.gnu.org/software/texinfo/) | 7.2 | devel | makeinfo is part of the Texinfo project, the official documentation format of the GNU project. | +| [matlab-proxy](https://github.com/mathworks/matlab-proxy) | 0.28.1 | math | A Python package which enables you to launch MATLAB and access it from a web browser. | +| [matlab-proxy](https://github.com/mathworks/matlab-proxy) | 0.28.1 | math | A Python package which enables you to launch MATLAB and access it from a web browser. | +| [matplotlib](https://matplotlib.org) | 3.10.3 | vis | matplotlib is a python 2D plotting library which produces publication quality figures in a variety of hardcopy formats and interactive environments across platforms. matplotlib can be used in python scripts, the python and ipython shell, web application servers, and six graphical user interface toolkits. | +| [matplotlib](https://matplotlib.org) | 3.10.3 | vis | matplotlib is a python 2D plotting library which produces publication quality figures in a variety of hardcopy formats and interactive environments across platforms. matplotlib can be used in python scripts, the python and ipython shell, web application servers, and six graphical user interface toolkits. | +| [maturin](https://github.com/pyo3/maturin) | 1.8.3 | tools | This project is meant as a zero configuration replacement for setuptools-rust and milksnake. It supports building wheels for python 3.5+ on windows, linux, mac and freebsd, can upload them to pypi and has basic pypy and graalpy support. | +| [maturin](https://github.com/pyo3/maturin) | 1.8.3 | tools | This project is meant as a zero configuration replacement for setuptools-rust and milksnake. It supports building wheels for python 3.5+ on windows, linux, mac and freebsd, can upload them to pypi and has basic pypy and graalpy support. | +| [meson-python](https://github.com/mesonbuild/meson-python) | 0.18.0 | tools | Python build backend (PEP 517) for Meson projects | +| [meson-python](https://github.com/mesonbuild/meson-python) | 0.18.0 | tools | Python build backend (PEP 517) for Meson projects | +| [motif](https://motif.ics.com/) | 2.3.8 | vis | Motif refers to both a graphical user interface (GUI) specification and the widget toolkit for building applications that follow that specification under the X Window System on Unix and other POSIX-compliant systems. It was the standard toolkit for the Common Desktop Environment and thus for Unix. | +| [motif](https://motif.ics.com/) | 2.3.8 | vis | Motif refers to both a graphical user interface (GUI) specification and the widget toolkit for building applications that follow that specification under the X Window System on Unix and other POSIX-compliant systems. It was the standard toolkit for the Common Desktop Environment and thus for Unix. | +| [mpi4py](https://github.com/mpi4py/mpi4py) | 4.1.0 | lib | MPI for Python (mpi4py) provides bindings of the Message Passing Interface (MPI) standard for the Python programming language, allowing any Python program to exploit multiple processors. | +| [mpi4py](https://github.com/mpi4py/mpi4py) | 4.1.0 | lib | MPI for Python (mpi4py) provides bindings of the Message Passing Interface (MPI) standard for the Python programming language, allowing any Python program to exploit multiple processors. | +| [mpifileutils](https://hpc.github.io/mpifileutils/) | 0.12 | tools | MPI-Based File Utilities For Distributed Systems | +| [mpifileutils](https://hpc.github.io/mpifileutils/) | 0.12 | tools | MPI-Based File Utilities For Distributed Systems | +| [msisensor-pro](https://github.com/xjtu-omics/msisensor-pro/wiki) | 1.3.0 | bio | MSIsensor-pro evaluates Microsatellite Instability (MSI) for cancer patients with next generation sequencing data. It accepts the whole genome sequencing, whole exome sequencing and target region (panel) sequencing data as input. | +| [msisensor-pro](https://github.com/xjtu-omics/msisensor-pro/wiki) | 1.3.0 | bio | MSIsensor-pro evaluates Microsatellite Instability (MSI) for cancer patients with next generation sequencing data. It accepts the whole genome sequencing, whole exome sequencing and target region (panel) sequencing data as input. | +| [multiprocess](https://github.com/uqfoundation/multiprocess) | 0.70.18 | lib | better multiprocessing and multithreading in python | +| [multiprocess](https://github.com/uqfoundation/multiprocess) | 0.70.18 | lib | better multiprocessing and multithreading in python | +| [nanobind](https://github.com/wjakob/nanobind) | 2.9.2 | lang | Nanobind is a small binding library that exposes C++ types in Python and vice versa. It is reminiscent of Boost.Python and pybind11 and uses near-identical syntax. In contrast to these existing tools, nanobind is more efficient: bindings compile in a shorter amount of time, produce smaller binaries, and have better runtime performance. | +| [nanobind](https://github.com/wjakob/nanobind) | 2.9.2 | lang | Nanobind is a small binding library that exposes C++ types in Python and vice versa. It is reminiscent of Boost.Python and pybind11 and uses near-identical syntax. In contrast to these existing tools, nanobind is more efficient: bindings compile in a shorter amount of time, produce smaller binaries, and have better runtime performance. | +| [nbclassic](https://jupyter.org/) | 1.3.1 | tools | NbClassic provides a backwards compatible Jupyter Notebook interface that you can install side-by-side with the latest versions: That way, you can fearlessly upgrade without worrying about your classic extensions and customizations breaking. | +| [nbclassic](https://jupyter.org/) | 1.3.1 | tools | NbClassic provides a backwards compatible Jupyter Notebook interface that you can install side-by-side with the latest versions: That way, you can fearlessly upgrade without worrying about your classic extensions and customizations breaking. | +| [ncurses](https://www.gnu.org/software/ncurses/) | 5.9 | devel | The Ncurses (new curses) library is a free software emulation of curses in System V Release 4.0, and more. It uses Terminfo format, supports pads and color and multiple highlights and forms characters and function-key mapping, and has all the other SYSV-curses enhancements over BSD Curses. | +| [ncurses](https://www.gnu.org/software/ncurses/) | 5.9 | devel | The Ncurses (new curses) library is a free software emulation of curses in System V Release 4.0, and more. It uses Terminfo format, supports pads and color and multiple highlights and forms characters and function-key mapping, and has all the other SYSV-curses enhancements over BSD Curses. | +| [ncurses](https://www.gnu.org/software/ncurses/) | 6.5 | devel | The Ncurses (new curses) library is a free software emulation of curses in System V Release 4.0, and more. It uses Terminfo format, supports pads and color and multiple highlights and forms characters and function-key mapping, and has all the other SYSV-curses enhancements over BSD Curses. | +| [ncurses](https://www.gnu.org/software/ncurses/) | 6.5 | devel | The Ncurses (new curses) library is a free software emulation of curses in System V Release 4.0, and more. It uses Terminfo format, supports pads and color and multiple highlights and forms characters and function-key mapping, and has all the other SYSV-curses enhancements over BSD Curses. | +| [ncurses](https://www.gnu.org/software/ncurses/) | 6.5 | devel | The Ncurses (new curses) library is a free software emulation of curses in System V Release 4.0, and more. It uses Terminfo format, supports pads and color and multiple highlights and forms characters and function-key mapping, and has all the other SYSV-curses enhancements over BSD Curses. | +| [ncurses](https://www.gnu.org/software/ncurses/) | 6.5 | devel | The Ncurses (new curses) library is a free software emulation of curses in System V Release 4.0, and more. It uses Terminfo format, supports pads and color and multiple highlights and forms characters and function-key mapping, and has all the other SYSV-curses enhancements over BSD Curses. | +| [netCDF-C++4](https://www.unidata.ucar.edu/software/netcdf/) | 4.3.1 | data | NetCDF (network Common Data Form) is a set of software libraries and machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data. | +| [netCDF-C++4](https://www.unidata.ucar.edu/software/netcdf/) | 4.3.1 | data | NetCDF (network Common Data Form) is a set of software libraries and machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data. | +| [netCDF-C++4](https://www.unidata.ucar.edu/software/netcdf/) | 4.3.1 | data | NetCDF (network Common Data Form) is a set of software libraries and machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data. | +| [netCDF-C++4](https://www.unidata.ucar.edu/software/netcdf/) | 4.3.1 | data | NetCDF (network Common Data Form) is a set of software libraries and machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data. | +| [netCDF-Fortran](https://www.unidata.ucar.edu/software/netcdf/) | 4.6.2 | data | NetCDF (network Common Data Form) is a set of software libraries and machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data. | +| [netCDF-Fortran](https://www.unidata.ucar.edu/software/netcdf/) | 4.6.2 | data | NetCDF (network Common Data Form) is a set of software libraries and machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data. | +| [netCDF-Fortran](https://www.unidata.ucar.edu/software/netcdf/) | 4.6.2 | data | NetCDF (network Common Data Form) is a set of software libraries and machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data. | +| [netCDF-Fortran](https://www.unidata.ucar.edu/software/netcdf/) | 4.6.2 | data | NetCDF (network Common Data Form) is a set of software libraries and machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data. | +| [netCDF](https://www.unidata.ucar.edu/software/netcdf/) | 4.9.3 | data | NetCDF (network Common Data Form) is a set of software libraries and machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data. | +| [netCDF](https://www.unidata.ucar.edu/software/netcdf/) | 4.9.3 | data | NetCDF (network Common Data Form) is a set of software libraries and machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data. | +| [netCDF](https://www.unidata.ucar.edu/software/netcdf/) | 4.9.3 | data | NetCDF (network Common Data Form) is a set of software libraries and machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data. | +| [netCDF](https://www.unidata.ucar.edu/software/netcdf/) | 4.9.3 | data | NetCDF (network Common Data Form) is a set of software libraries and machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data. | +| [nettle](https://www.lysator.liu.se/~nisse/nettle/) | 3.10.1 | lib | Nettle is a cryptographic library that is designed to fit easily in more or less any context: In crypto toolkits for object-oriented languages (C++, Python, Pike, ...), in applications like LSH or GNUPG, or even in kernel space. | +| [nettle](https://www.lysator.liu.se/~nisse/nettle/) | 3.10.1 | lib | Nettle is a cryptographic library that is designed to fit easily in more or less any context: In crypto toolkits for object-oriented languages (C++, Python, Pike, ...), in applications like LSH or GNUPG, or even in kernel space. | +| [networkx](https://pypi.python.org/pypi/networkx) | 3.5 | tools | NetworkX is a Python package for the creation, manipulation, and study of the structure, dynamics, and functions of complex networks. | +| [networkx](https://pypi.python.org/pypi/networkx) | 3.5 | tools | NetworkX is a Python package for the creation, manipulation, and study of the structure, dynamics, and functions of complex networks. | +| [nlohmann_json](https://github.com/nlohmann/json) | 3.12.0 | lib | JSON for Modern C++ | +| [nlohmann_json](https://github.com/nlohmann/json) | 3.12.0 | lib | JSON for Modern C++ | +| [nodejs](https://nodejs.org) | 22.16.0 | lang | Node.js is a platform built on Chrome's JavaScript runtime for easily building fast, scalable network applications. Node.js uses an event-driven, non-blocking I/O model that makes it lightweight and efficient, perfect for data-intensive real-time applications that run across distributed devices. | +| [nodejs](https://nodejs.org) | 22.16.0 | lang | Node.js is a platform built on Chrome's JavaScript runtime for easily building fast, scalable network applications. Node.js uses an event-driven, non-blocking I/O model that makes it lightweight and efficient, perfect for data-intensive real-time applications that run across distributed devices. | +| [nsync](https://github.com/google/nsync) | 1.29.2 | devel | nsync is a C library that exports various synchronization primitives, such as mutexes | +| [nsync](https://github.com/google/nsync) | 1.29.2 | devel | nsync is a C library that exports various synchronization primitives, such as mutexes | +| [numactl](https://github.com/numactl/numactl) | 2.0.19 | tools | The numactl program allows you to run your application program on specific cpu's and memory nodes. It does this by supplying a NUMA memory policy to the operating system before running your program. The libnuma library provides convenient ways for you to add NUMA memory policies into your own program. | +| [numactl](https://github.com/numactl/numactl) | 2.0.19 | tools | The numactl program allows you to run your application program on specific cpu's and memory nodes. It does this by supplying a NUMA memory policy to the operating system before running your program. The libnuma library provides convenient ways for you to add NUMA memory policies into your own program. | +| [numba](https://numba.pydata.org/) | 0.62.0 | lang | Numba is an Open Source NumPy-aware optimizing compiler for Python sponsored by Continuum Analytics, Inc. It uses the remarkable LLVM compiler infrastructure to compile Python syntax to machine code. | +| [numba](https://numba.pydata.org/) | 0.62.0 | lang | Numba is an Open Source NumPy-aware optimizing compiler for Python sponsored by Continuum Analytics, Inc. It uses the remarkable LLVM compiler infrastructure to compile Python syntax to machine code. | +| [nvbandwidth](https://github.com/NVIDIA/nvbandwidth) | 0.8 | perf | A tool for bandwidth measurements on NVIDIA GPUs. Measures bandwidth for various memcpy patterns across different links using copy engine or kernel copy methods. nvbandwidth reports current measured bandwidth on your system. Additional system-specific tuning may be required to achieve maximal peak bandwidth. | +| [nvbandwidth](https://github.com/NVIDIA/nvbandwidth) | 0.8 | perf | A tool for bandwidth measurements on NVIDIA GPUs. Measures bandwidth for various memcpy patterns across different links using copy engine or kernel copy methods. nvbandwidth reports current measured bandwidth on your system. Additional system-specific tuning may be required to achieve maximal peak bandwidth. | +| [nvidia-cutlass](https://github.com/nvidia/cutlass) | 3.8.0.0 | lib | CUTLASS is a collection of CUDA C++ template abstractions for implementing high-performance matrix-matrix multiplication (GEMM) and related computations at all levels and scales within CUDA. It incorporates strategies for hierarchical decomposition and data movement similar to those used to implement cuBLAS and cuDNN. CUTLASS decomposes these "moving parts" into reusable, modular software components abstracted by C++ template classes. Primitives for different levels of a conceptual parallelization hierarchy can be specialized and tuned via custom tiling sizes, data types, and other algorithmic policy. The resulting flexibility simplifies their use as building blocks within custom kernels and applications. | +| [nvidia-cutlass](https://github.com/nvidia/cutlass) | 3.8.0.0 | lib | CUTLASS is a collection of CUDA C++ template abstractions for implementing high-performance matrix-matrix multiplication (GEMM) and related computations at all levels and scales within CUDA. It incorporates strategies for hierarchical decomposition and data movement similar to those used to implement cuBLAS and cuDNN. CUTLASS decomposes these "moving parts" into reusable, modular software components abstracted by C++ template classes. Primitives for different levels of a conceptual parallelization hierarchy can be specialized and tuned via custom tiling sizes, data types, and other algorithmic policy. The resulting flexibility simplifies their use as building blocks within custom kernels and applications. | +| [nvompi]((none)) | 2025a | toolchain | NVHPC based compiler toolchain, including OpenMPI for MPI support. | +| [nvompi]((none)) | 2025a | toolchain | NVHPC based compiler toolchain, including OpenMPI for MPI support. | +| [nvtop](https://github.com/Syllo/nvtop) | 3.2.0 | tools | htop-like GPU usage monitor | +| [nvtop](https://github.com/Syllo/nvtop) | 3.2.0 | tools | htop-like GPU usage monitor | +| [ompi-configs](https://openucx.org/) | UCX | system | This module initiates the standard OpenMPI configuration and depends on UCX. A module for setting environment variables. | +| [ompi-configs](https://openucx.org/) | UCX | system | This module initiates the standard OpenMPI configuration and depends on UCX. A module for setting environment variables. | +| [ompi-configs](https://openucx.org/) | UCX-CUDA | system | This module initiates the standard OpenMPI configuration and depends on UCX-CUDA. A module for setting environment variables. | +| [ompi-configs](https://openucx.org/) | UCX-CUDA | system | This module initiates the standard OpenMPI configuration and depends on UCX-CUDA. A module for setting environment variables. | +| [ompi-configs](https://openucx.org/) | UCX-UCC | system | This module initiates the standard OpenMPI configuration and depends on UCX and prioritizes UCC for collective communication. A module for setting environment variables. | +| [ompi-configs](https://openucx.org/) | UCX-UCC | system | This module initiates the standard OpenMPI configuration and depends on UCX and prioritizes UCC for collective communication. A module for setting environment variables. | +| [ompi-configs](https://openucx.org/) | UCX-UCC-CUDA | system | This module initiates the standard OpenMPI configuration and depends on UCX-CUDA and prioritizes UCC for collective communication. A module for setting environment variables. | +| [ompi-configs](https://openucx.org/) | UCX-UCC-CUDA | system | This module initiates the standard OpenMPI configuration and depends on UCX-CUDA and prioritizes UCC for collective communication. A module for setting environment variables. | +| [p7zip](https://github.com/p7zip-project/p7zip/) | 17.05 | tools | p7zip is a quick port of 7z.exe and 7za.exe (CLI version of 7zip) for Unix. 7-Zip is a file archiver with highest compression ratio. | +| [p7zip](https://github.com/p7zip-project/p7zip/) | 17.05 | tools | p7zip is a quick port of 7z.exe and 7za.exe (CLI version of 7zip) for Unix. 7-Zip is a file archiver with highest compression ratio. | +| [parallel](https://savannah.gnu.org/projects/parallel/) | 20250722 | tools | parallel: Build and execute shell commands in parallel | +| [parallel](https://savannah.gnu.org/projects/parallel/) | 20250722 | tools | parallel: Build and execute shell commands in parallel | +| [parameterized](https://github.com/wolever/parameterized) | 0.9.0 | tools | Parameterized testing with any Python test framework | +| [parameterized](https://github.com/wolever/parameterized) | 0.9.0 | tools | Parameterized testing with any Python test framework | +| [patchelf](https://github.com/NixOS/patchelf) | 0.18.0 | tools | PatchELF is a small utility to modify the dynamic linker and RPATH of ELF executables. | +| [patchelf](https://github.com/NixOS/patchelf) | 0.18.0 | tools | PatchELF is a small utility to modify the dynamic linker and RPATH of ELF executables. | +| [pixman](http://www.pixman.org/) | 0.46.2 | vis | Pixman is a low-level software library for pixel manipulation, providing features such as image compositing and trapezoid rasterization. Important users of pixman are the cairo graphics library and the X server. | +| [pixman](http://www.pixman.org/) | 0.46.2 | vis | Pixman is a low-level software library for pixel manipulation, providing features such as image compositing and trapezoid rasterization. Important users of pixman are the cairo graphics library and the X server. | +| [pkg-config](https://www.freedesktop.org/wiki/Software/pkg-config/) | 0.29.2 | devel | pkg-config is a helper tool used when compiling applications and libraries. It helps you insert the correct compiler options on the command line so an application can use gcc -o test test.c `pkg-config --libs --cflags glib-2.0` for instance, rather than hard-coding values on where to find glib (or other libraries). | +| [pkg-config](https://www.freedesktop.org/wiki/Software/pkg-config/) | 0.29.2 | devel | pkg-config is a helper tool used when compiling applications and libraries. It helps you insert the correct compiler options on the command line so an application can use gcc -o test test.c `pkg-config --libs --cflags glib-2.0` for instance, rather than hard-coding values on where to find glib (or other libraries). | +| [pkgconf](https://github.com/pkgconf/pkgconf) | 1.8.0 | devel | pkgconf is a program which helps to configure compiler and linker flags for development libraries. It is similar to pkg-config from freedesktop.org. | +| [pkgconf](https://github.com/pkgconf/pkgconf) | 1.8.0 | devel | pkgconf is a program which helps to configure compiler and linker flags for development libraries. It is similar to pkg-config from freedesktop.org. | +| [pkgconf](https://github.com/pkgconf/pkgconf) | 2.3.0 | devel | pkgconf is a program which helps to configure compiler and linker flags for development libraries. It is similar to pkg-config from freedesktop.org. | +| [pkgconf](https://github.com/pkgconf/pkgconf) | 2.3.0 | devel | pkgconf is a program which helps to configure compiler and linker flags for development libraries. It is similar to pkg-config from freedesktop.org. | +| [plotly.py](https://plot.ly/python) | 6.3.1 | vis | An open-source, interactive graphing library for Python | +| [plotly.py](https://plot.ly/python) | 6.3.1 | vis | An open-source, interactive graphing library for Python | +| [pocl](http://portablecl.org) | 7.0 | lib | PoCL is a conformant implementation (for CPU and Level Zero GPU targets) of the OpenCL 3.0 standard which can be easily adapted for new targets. | +| [pocl](http://portablecl.org) | 7.0 | lib | PoCL is a conformant implementation (for CPU and Level Zero GPU targets) of the OpenCL 3.0 standard which can be easily adapted for new targets. | +| [poetry](https://python-poetry.org) | 2.1.2 | tools | Python packaging and dependency management made easy. Poetry helps you declare, manage and install dependencies of Python projects, ensuring you have the right stack everywhere. | +| [poetry](https://python-poetry.org) | 2.1.2 | tools | Python packaging and dependency management made easy. Poetry helps you declare, manage and install dependencies of Python projects, ensuring you have the right stack everywhere. | +| [popt](http://freecode.com/projects/popt) | 1.19 | lib | Popt is a C library for parsing command line parameters. | +| [popt](http://freecode.com/projects/popt) | 1.19 | lib | Popt is a C library for parsing command line parameters. | +| [protobuf-python](https://github.com/google/protobuf/) | 6.31.1 | devel | Python Protocol Buffers runtime library. | +| [protobuf-python](https://github.com/google/protobuf/) | 6.31.1 | devel | Python Protocol Buffers runtime library. | +| [protobuf](https://github.com/protocolbuffers/protobuf) | 31.1 | devel | Protocol Buffers (a.k.a., protobuf) are Google's language-neutral, platform-neutral, extensible mechanism for serializing structured data. | +| [protobuf](https://github.com/protocolbuffers/protobuf) | 31.1 | devel | Protocol Buffers (a.k.a., protobuf) are Google's language-neutral, platform-neutral, extensible mechanism for serializing structured data. | +| [psutil](https://github.com/giampaolo/psutil) | 7.0.0 | lib | A cross-platform process and system utilities module for Python | +| [psutil](https://github.com/giampaolo/psutil) | 7.0.0 | lib | A cross-platform process and system utilities module for Python | +| [psycopg](https://psycopg.org/) | 3.2.9 | lib | Psycopg is the most popular PostgreSQL adapter for the Python programming language. | +| [psycopg](https://psycopg.org/) | 3.2.9 | lib | Psycopg is the most popular PostgreSQL adapter for the Python programming language. | +| [pybind11](https://pybind11.readthedocs.io) | 2.13.6 | lib | pybind11 is a lightweight header-only library that exposes C++ types in Python and vice versa, mainly to create Python bindings of existing C++ code. | +| [pybind11](https://pybind11.readthedocs.io) | 2.13.6 | lib | pybind11 is a lightweight header-only library that exposes C++ types in Python and vice versa, mainly to create Python bindings of existing C++ code. | +| [pydantic](https://github.com/samuelcolvin/pydantic) | 2.11.7 | devel | Data validation and settings management using Python type hinting. | +| [pydantic](https://github.com/samuelcolvin/pydantic) | 2.11.7 | devel | Data validation and settings management using Python type hinting. | +| [pydot](https://github.com/pydot/pydot) | 4.0.0 | vis | Python interface to Graphviz's Dot language. | +| [pydot](https://github.com/pydot/pydot) | 4.0.0 | vis | Python interface to Graphviz's Dot language. | +| [pyfaidx](https://pypi.python.org/pypi/pyfaidx) | 0.8.1.4 | bio | pyfaidx: efficient pythonic random access to fasta subsequences | +| [pyfaidx](https://pypi.python.org/pypi/pyfaidx) | 0.8.1.4 | bio | pyfaidx: efficient pythonic random access to fasta subsequences | +| [pyproj](https://pyproj4.github.io/pyproj) | 3.7.1 | data | Python interface to PROJ4 library for cartographic transformations | +| [pyproj](https://pyproj4.github.io/pyproj) | 3.7.1 | data | Python interface to PROJ4 library for cartographic transformations | +| [pytest-flakefinder](https://github.com/dropbox/pytest-flakefinder) | 1.1.0 | tools | Runs tests multiple times to expose flakiness. | +| [pytest-flakefinder](https://github.com/dropbox/pytest-flakefinder) | 1.1.0 | tools | Runs tests multiple times to expose flakiness. | +| [pytest-rerunfailures](https://github.com/pytest-dev/pytest-rerunfailures) | 15.0 | tools | pytest plugin to re-run tests to eliminate flaky failures. | +| [pytest-rerunfailures](https://github.com/pytest-dev/pytest-rerunfailures) | 15.0 | tools | pytest plugin to re-run tests to eliminate flaky failures. | +| [pytest-shard](https://github.com/AdamGleave/pytest-shard) | 0.1.2 | tools | pytest plugin to support parallelism across multiple machines. Shards tests based on a hash of their test name enabling easy parallelism across machines, suitable for a wide variety of continuous integration services. Tests are split at the finest level of granularity, individual test cases, enabling parallelism even if all of your tests are in a single file (or even single parameterized test method). | +| [pytest-shard](https://github.com/AdamGleave/pytest-shard) | 0.1.2 | tools | pytest plugin to support parallelism across multiple machines. Shards tests based on a hash of their test name enabling easy parallelism across machines, suitable for a wide variety of continuous integration services. Tests are split at the finest level of granularity, individual test cases, enabling parallelism even if all of your tests are in a single file (or even single parameterized test method). | +| [pytest-subtests](https://github.com/pytest-dev/pytest-subtests) | 0.13.1 | tools | unittest subTest() support and subtests fixture. | +| [pytest-subtests](https://github.com/pytest-dev/pytest-subtests) | 0.13.1 | tools | unittest subTest() support and subtests fixture. | +| [pyzstd](https://github.com/pycompression/python-zlib-ng) | 0.17.0 | tools | Pyzstd module provides classes and functions for compressing and decompressing data, using Facebook's Zstandard (or zstd as short name) algorithm. The API style is similar to Python's bz2/lzma/zlib modules. | +| [pyzstd](https://github.com/pycompression/python-zlib-ng) | 0.17.0 | tools | Pyzstd module provides classes and functions for compressing and decompressing data, using Facebook's Zstandard (or zstd as short name) algorithm. The API style is similar to Python's bz2/lzma/zlib modules. | +| [qsimcirq](https://github.com/quantumlib/qsim) | 0.22.0 | quantum | qsim is a state-vector simulator for quantum circuits. It is highly tuned to take advantage of vector arithmetic instruction sets and multithreading on computers that provide them, as well as GPUs when available. qsim also provides a Cirq interface (qsimcirq) and can be used to simulate quantum circuits written in Cirq. | +| [qsimcirq](https://github.com/quantumlib/qsim) | 0.22.0 | quantum | qsim is a state-vector simulator for quantum circuits. It is highly tuned to take advantage of vector arithmetic instruction sets and multithreading on computers that provide them, as well as GPUs when available. qsim also provides a Cirq interface (qsimcirq) and can be used to simulate quantum circuits written in Cirq. | +| [re2c](https://re2c.org) | 4.2 | tools | re2c is a free and open-source lexer generator for C and C++. Its main goal is generating fast lexers: at least as fast as their reasonably optimized hand-coded counterparts. Instead of using traditional table-driven approach, re2c encodes the generated finite state automata directly in the form of conditional jumps and comparisons. | +| [re2c](https://re2c.org) | 4.2 | tools | re2c is a free and open-source lexer generator for C and C++. Its main goal is generating fast lexers: at least as fast as their reasonably optimized hand-coded counterparts. Instead of using traditional table-driven approach, re2c encodes the generated finite state automata directly in the form of conditional jumps and comparisons. | +| [retworkx](https://github.com/Qiskit/retworkx) | 0.9.0 | math | retworkx is a general purpose graph library for python3 written in Rust to take advantage of the performance and safety that Rust provides. It was built as a replacement for qiskit's previous (and current) networkx usage (hence the name) but is designed to provide a high performance general purpose graph library for any python application. The project was originally started to build a faster directed graph to use as the underlying data structure for the DAG at the center of qiskit-terra's transpiler, but it has since grown to cover all the graph usage in Qiskit and other applications. | +| [retworkx](https://github.com/Qiskit/retworkx) | 0.9.0 | math | retworkx is a general purpose graph library for python3 written in Rust to take advantage of the performance and safety that Rust provides. It was built as a replacement for qiskit's previous (and current) networkx usage (hence the name) but is designed to provide a high performance general purpose graph library for any python application. The project was originally started to build a faster directed graph to use as the underlying data structure for the DAG at the center of qiskit-terra's transpiler, but it has since grown to cover all the graph usage in Qiskit and other applications. | +| [rustworkx](https://github.com/Qiskit/rustworkx) | 0.16.0 | math | rustworkx (previously retworkx) is a general purpose graph library for Python written in Rust to take advantage of the performance and safety that Rust provides. It is designed to provide a high performance general purpose graph library for any Python application. | +| [rustworkx](https://github.com/Qiskit/rustworkx) | 0.16.0 | math | rustworkx (previously retworkx) is a general purpose graph library for Python written in Rust to take advantage of the performance and safety that Rust provides. It is designed to provide a high performance general purpose graph library for any Python application. | +| [s3cmd](https://s3tools.org/s3cmd) | 2.4.0 | tools | S3cmd lets you copy files from/to Amazon S3 (Simple Storage Service) using a simple to use command line client. Supports rsync-like backup, GPG encryption, and more. Also supports management of Amazon’s CloudFront content delivery network. | +| [s3cmd](https://s3tools.org/s3cmd) | 2.4.0 | tools | S3cmd lets you copy files from/to Amazon S3 (Simple Storage Service) using a simple to use command line client. Supports rsync-like backup, GPG encryption, and more. Also supports management of Amazon’s CloudFront content delivery network. | +| [scikit-build-core](https://scikit-build.readthedocs.io/en/latest/) | 0.11.1 | lib | Scikit-build-core is a complete ground-up rewrite of scikit-build on top of modern packaging APIs. It provides a bridge between CMake and the Python build system, allowing you to make Python modules with CMake. | +| [scikit-build-core](https://scikit-build.readthedocs.io/en/latest/) | 0.11.1 | lib | Scikit-build-core is a complete ground-up rewrite of scikit-build on top of modern packaging APIs. It provides a bridge between CMake and the Python build system, allowing you to make Python modules with CMake. | +| [scikit-build](https://scikit-build.readthedocs.io/en/latest) | 0.18.1 | lib | Scikit-Build, or skbuild, is an improved build system generator for CPython C/C++/Fortran/Cython extensions. | +| [scikit-build](https://scikit-build.readthedocs.io/en/latest) | 0.18.1 | lib | Scikit-Build, or skbuild, is an improved build system generator for CPython C/C++/Fortran/Cython extensions. | +| [scikit-image](https://scikit-image.org/) | 0.25.0 | vis | scikit-image is a collection of algorithms for image processing. | +| [scikit-image](https://scikit-image.org/) | 0.25.0 | vis | scikit-image is a collection of algorithms for image processing. | +| [scikit-learn](https://scikit-learn.org/stable/index.html) | 1.7.0 | data | Scikit-learn integrates machine learning algorithms in the tightly-knit scientific Python world, building upon numpy, scipy, and matplotlib. As a machine-learning module, it provides versatile tools for data mining and analysis in any field of science and engineering. It strives to be simple and efficient, accessible to everybody, and reusable in various contexts. | +| [scikit-learn](https://scikit-learn.org/stable/index.html) | 1.7.0 | data | Scikit-learn integrates machine learning algorithms in the tightly-knit scientific Python world, building upon numpy, scipy, and matplotlib. As a machine-learning module, it provides versatile tools for data mining and analysis in any field of science and engineering. It strives to be simple and efficient, accessible to everybody, and reusable in various contexts. | +| [setuptools-rust](https://github.com/PyO3/setuptools-rust) | 1.11.0 | tools | setuptools-rust is a plugin for setuptools to build Rust Python extensions implemented with PyO3 or rust-cpython. | +| [setuptools-rust](https://github.com/PyO3/setuptools-rust) | 1.11.0 | tools | setuptools-rust is a plugin for setuptools to build Rust Python extensions implemented with PyO3 or rust-cpython. | +| [setuptools](https://pypi.org/project/setuptools) | 80.9.0 | devel | Easily download, build, install, upgrade, and uninstall Python packages | +| [setuptools](https://pypi.org/project/setuptools) | 80.9.0 | devel | Easily download, build, install, upgrade, and uninstall Python packages | +| [shared-mime-info](https://gitlab.freedesktop.org/xdg/shared-mime-info) | 2.4 | tools | The shared-mime-info package contains: The core database of common MIME types, their file extensions and icon names. The update-mime-database command, used to extend the DB and install a new MIME data. The freedesktop.org shared MIME database spec. It is used by GLib, GNOME, KDE, XFCE and many others. | +| [shared-mime-info](https://gitlab.freedesktop.org/xdg/shared-mime-info) | 2.4 | tools | The shared-mime-info package contains: The core database of common MIME types, their file extensions and icon names. The update-mime-database command, used to extend the DB and install a new MIME data. The freedesktop.org shared MIME database spec. It is used by GLib, GNOME, KDE, XFCE and many others. | +| [snappy](https://github.com/google/snappy) | 1.2.2 | lib | Snappy is a compression/decompression library. It does not aim for maximum compression, or compatibility with any other compression library; instead, it aims for very high speeds and reasonable compression. | +| [snappy](https://github.com/google/snappy) | 1.2.2 | lib | Snappy is a compression/decompression library. It does not aim for maximum compression, or compatibility with any other compression library; instead, it aims for very high speeds and reasonable compression. | +| [spdlog](https://github.com/gabime/spdlog) | 1.11.0 | lib | Very fast, header-only/compiled, C++ logging library. | +| [spdlog](https://github.com/gabime/spdlog) | 1.11.0 | lib | Very fast, header-only/compiled, C++ logging library. | +| [spglib](https://spglib.github.io/spglib/) | 2.6.0 | chem | Spglib is a C library for finding and handling crystal symmetries. | +| [spglib](https://spglib.github.io/spglib/) | 2.6.0 | chem | Spglib is a C library for finding and handling crystal symmetries. | +| [spin](https://github.com/scientific-python/spin) | 0.14 | devel | Developer tool for scientific Python libraries | +| [spin](https://github.com/scientific-python/spin) | 0.14 | devel | Developer tool for scientific Python libraries | +| [squashfuse](https://github.com/vasi/squashfuse) | 0.6.1 | lib | Squashfuse lets you mount SquashFS archives in user-space. It supports almost all features of the SquashFS format, yet is still fast and memory-efficient. So that everyone can use it, squashfuse supports many different operating systems #and is available under a permissing license. SquashFS is an efficiently compressed, read-only storage format. Support for it has been built into the Linux kernel since 2009. It is very common on Live CDs and embedded Linux distributions. | +| [squashfuse](https://github.com/vasi/squashfuse) | 0.6.1 | lib | Squashfuse lets you mount SquashFS archives in user-space. It supports almost all features of the SquashFS format, yet is still fast and memory-efficient. So that everyone can use it, squashfuse supports many different operating systems #and is available under a permissing license. SquashFS is an efficiently compressed, read-only storage format. Support for it has been built into the Linux kernel since 2009. It is very common on Live CDs and embedded Linux distributions. | +| [sympy](https://sympy.org/) | 1.14.0 | math | SymPy is a Python library for symbolic mathematics. It aims to become a full-featured computer algebra system (CAS) while keeping the code as simple as possible in order to be comprehensible and easily extensible. SymPy is written entirely in Python and does not require any external libraries. | +| [sympy](https://sympy.org/) | 1.14.0 | math | SymPy is a Python library for symbolic mathematics. It aims to become a full-featured computer algebra system (CAS) while keeping the code as simple as possible in order to be comprehensible and easily extensible. SymPy is written entirely in Python and does not require any external libraries. | +| [tbb](https://github.com/oneapi-src/oneTBB) | 2022.2.0 | lib | Intel(R) Threading Building Blocks (Intel(R) TBB) lets you easily write parallel C++ programs that take full advantage of multicore performance, that are portable, composable and have future-proof scalability. | +| [tbb](https://github.com/oneapi-src/oneTBB) | 2022.2.0 | lib | Intel(R) Threading Building Blocks (Intel(R) TBB) lets you easily write parallel C++ programs that take full advantage of multicore performance, that are portable, composable and have future-proof scalability. | +| [tcsh](https://www.tcsh.org) | 6.24.16 | tools | Tcsh is an enhanced, but completely compatible version of the Berkeley UNIX C shell (csh). It is a command language interpreter usable both as an interactive login shell and a shell script command processor. It includes a command-line editor, programmable word completion, spelling correction, a history mechanism, job control and a C-like syntax. | +| [tcsh](https://www.tcsh.org) | 6.24.16 | tools | Tcsh is an enhanced, but completely compatible version of the Berkeley UNIX C shell (csh). It is a command language interpreter usable both as an interactive login shell and a shell script command processor. It includes a command-line editor, programmable word completion, spelling correction, a history mechanism, job control and a C-like syntax. | +| [time](https://www.gnu.org/software/time/) | 1.9 | tools | The `time' command runs another program, then displays information about the resources used by that program, collected by the system while the program was running. | +| [time](https://www.gnu.org/software/time/) | 1.9 | tools | The `time' command runs another program, then displays information about the resources used by that program, collected by the system while the program was running. | +| [tlparse](https://github.com/ezyang/tlparse) | 0.3.37 | tools | Parse structured PT2 (PyTorch 2) logs | +| [tlparse](https://github.com/ezyang/tlparse) | 0.3.37 | tools | Parse structured PT2 (PyTorch 2) logs | +| [torchaudio](https://github.com/pytorch/audio) | 2.9.1 | ai | Data manipulation and transformation for audio signal processing, powered by PyTorch | +| [torchvision](https://github.com/pytorch/vision) | 0.24.1 | vis | Datasets, Transforms and Models specific to Computer Vision | +| [tornado](https://github.com/tornadoweb/tornado) | 6.5.1 | lib | Tornado is a Python web framework and asynchronous networking library. | +| [tornado](https://github.com/tornadoweb/tornado) | 6.5.1 | lib | Tornado is a Python web framework and asynchronous networking library. | +| [tqdm](https://github.com/tqdm/tqdm) | 4.67.1 | lib | A fast, extensible progress bar for Python and CLI | +| [tqdm](https://github.com/tqdm/tqdm) | 4.67.1 | lib | A fast, extensible progress bar for Python and CLI | +| [typing-extensions](https://github.com/python/typing_extensions) | 4.14.0 | devel | Typing Extensions - Backported and Experimental Type Hints for Python | +| [typing-extensions](https://github.com/python/typing_extensions) | 4.14.0 | devel | Typing Extensions - Backported and Experimental Type Hints for Python | +| [ucx-configs](https://openucx.org/) | DC | system | This module configures UCX to use the UD (Dynamically Connected) transport layer. Each process would use a single network device according to NUMA locality. | +| [ucx-configs](https://openucx.org/) | DC | system | This module configures UCX to use the UD (Dynamically Connected) transport layer. Each process would use a single network device according to NUMA locality. | +| [ucx-configs](https://openucx.org/) | DC-CUDA | system | This module configures UCX to use the UD (Dynamically Connected) transport layer with the CUWA-aware transports. Each process would use a single network device according to NUMA locality. | +| [ucx-configs](https://openucx.org/) | DC-CUDA | system | This module configures UCX to use the UD (Dynamically Connected) transport layer with the CUWA-aware transports. Each process would use a single network device according to NUMA locality. | +| [ucx-configs](https://openucx.org/) | RC | system | This module configures UCX to use the RC (Reliable Connected) transport layer. Each process would use a single network device according to NUMA locality. | +| [ucx-configs](https://openucx.org/) | RC | system | This module configures UCX to use the RC (Reliable Connected) transport layer. Each process would use a single network device according to NUMA locality. | +| [ucx-configs](https://openucx.org/) | RC-CUDA | system | This module configures UCX to use the RC (Reliable Connected) transport layer with the CUWA-aware transports. Each process would use a single network device according to NUMA locality. | +| [ucx-configs](https://openucx.org/) | RC-CUDA | system | This module configures UCX to use the RC (Reliable Connected) transport layer with the CUWA-aware transports. Each process would use a single network device according to NUMA locality. | +| [ucx-configs](https://openucx.org/) | UD | system | This module configures UCX to use the UD (Unreliable Datagram) transport layer. Each process would use a single network device according to NUMA locality. | +| [ucx-configs](https://openucx.org/) | UD | system | This module configures UCX to use the UD (Unreliable Datagram) transport layer. Each process would use a single network device according to NUMA locality. | +| [ucx-configs](https://openucx.org/) | UD-CUDA | system | This module configures UCX to use the UD (Unreliable Datagram) transport layer with the CUWA-aware transports. Each process would use a single network device according to NUMA locality. | +| [ucx-configs](https://openucx.org/) | UD-CUDA | system | This module configures UCX to use the UD (Unreliable Datagram) transport layer with the CUWA-aware transports. Each process would use a single network device according to NUMA locality. | +| [utf8proc](https://github.com/JuliaStrings/utf8proc) | 2.10.0 | lib | utf8proc is a small, clean C library that provides Unicode normalization, case-folding, and other operations for data in the UTF-8 encoding. | +| [utf8proc](https://github.com/JuliaStrings/utf8proc) | 2.10.0 | lib | utf8proc is a small, clean C library that provides Unicode normalization, case-folding, and other operations for data in the UTF-8 encoding. | +| [util-linux](https://www.kernel.org/pub/linux/utils/util-linux) | 2.41 | tools | Set of Linux utilities | +| [util-linux](https://www.kernel.org/pub/linux/utils/util-linux) | 2.41 | tools | Set of Linux utilities | +| [virtualenv](https://github.com/pypa/virtualenv) | 20.29.2 | tools | A tool for creating isolated virtual python environments. | +| [virtualenv](https://github.com/pypa/virtualenv) | 20.29.2 | tools | A tool for creating isolated virtual python environments. | +| [wrapt](https://pypi.org/project/wrapt/) | 1.17.2 | tools | The aim of the wrapt module is to provide a transparent object proxy for Python, which can be used as the basis for the construction of function wrappers and decorator functions. | +| [wrapt](https://pypi.org/project/wrapt/) | 1.17.2 | tools | The aim of the wrapt module is to provide a transparent object proxy for Python, which can be used as the basis for the construction of function wrappers and decorator functions. | +| [x264](https://www.videolan.org/developers/x264.html) | 20250619 | vis | x264 is a free software library and application for encoding video streams into the H.264/MPEG-4 AVC compression format, and is released under the terms of the GNU GPL. | +| [x264](https://www.videolan.org/developers/x264.html) | 20250619 | vis | x264 is a free software library and application for encoding video streams into the H.264/MPEG-4 AVC compression format, and is released under the terms of the GNU GPL. | +| [x265](https://x265.org/) | 4.1 | vis | x265 is a free software library and application for encoding video streams into the H.265 AVC compression format, and is released under the terms of the GNU GPL. | +| [x265](https://x265.org/) | 4.1 | vis | x265 is a free software library and application for encoding video streams into the H.265 AVC compression format, and is released under the terms of the GNU GPL. | +| [xcb-proto](https://xcb.freedesktop.org/) | 1.17.0 | devel | The X protocol C-language Binding (XCB) is a replacement for Xlib featuring a small footprint, latency hiding, direct access to the protocol, improved threading support, and extensibility. | +| [xcb-proto](https://xcb.freedesktop.org/) | 1.17.0 | devel | The X protocol C-language Binding (XCB) is a replacement for Xlib featuring a small footprint, latency hiding, direct access to the protocol, improved threading support, and extensibility. | +| [xorg-macros](https://gitlab.freedesktop.org/xorg/util/macros) | 1.20.2 | devel | X.org macros utilities. | +| [xorg-macros](https://gitlab.freedesktop.org/xorg/util/macros) | 1.20.2 | devel | X.org macros utilities. | +| [xxd](https://www.vim.org) | 9.1.1457 | tools | xxd is part of the VIM package and this will only install xxd, not vim! xxd converts to/from hexdumps of binary files. | +| [xxd](https://www.vim.org) | 9.1.1457 | tools | xxd is part of the VIM package and this will only install xxd, not vim! xxd converts to/from hexdumps of binary files. | +| [yaml-cpp](https://github.com/jbeder/yaml-cpp) | 0.8.0 | tools | yaml-cpp is a YAML parser and emitter in C++ matching the YAML 1.2 spec | +| [yaml-cpp](https://github.com/jbeder/yaml-cpp) | 0.8.0 | tools | yaml-cpp is a YAML parser and emitter in C++ matching the YAML 1.2 spec | +| [zlib](https://www.zlib.net/) | 1.2.13 | lib | zlib is designed to be a free, general-purpose, legally unencumbered -- that is, not covered by any patents -- lossless data-compression library for use on virtually any computer hardware and operating system. | +| [zlib](https://www.zlib.net/) | 1.2.13 | lib | zlib is designed to be a free, general-purpose, legally unencumbered -- that is, not covered by any patents -- lossless data-compression library for use on virtually any computer hardware and operating system. | +| [zlib](https://www.zlib.net/) | 1.3.1 | lib | zlib is designed to be a free, general-purpose, legally unencumbered -- that is, not covered by any patents -- lossless data-compression library for use on virtually any computer hardware and operating system. | +| [zlib](https://www.zlib.net/) | 1.3.1 | lib | zlib is designed to be a free, general-purpose, legally unencumbered -- that is, not covered by any patents -- lossless data-compression library for use on virtually any computer hardware and operating system. | +| [zlib](https://www.zlib.net/) | 1.3.1 | lib | zlib is designed to be a free, general-purpose, legally unencumbered -- that is, not covered by any patents -- lossless data-compression library for use on virtually any computer hardware and operating system. | +| [zlib](https://www.zlib.net/) | 1.3.1 | lib | zlib is designed to be a free, general-purpose, legally unencumbered -- that is, not covered by any patents -- lossless data-compression library for use on virtually any computer hardware and operating system. | +| [zstd](https://facebook.github.io/zstd) | 1.5.6 | lib | Zstandard is a real-time compression algorithm, providing high compression ratios. It offers a very wide range of compression/speed trade-off, while being backed by a very fast decoder. It also offers a special mode for small data, called dictionary compression, and can create dictionaries from any sample set. | +| [zstd](https://facebook.github.io/zstd) | 1.5.6 | lib | Zstandard is a real-time compression algorithm, providing high compression ratios. It offers a very wide range of compression/speed trade-off, while being backed by a very fast decoder. It also offers a special mode for small data, called dictionary compression, and can create dictionaries from any sample set. | \ No newline at end of file From ad32c5b006d11ae7a545c55b0b055a2c8426ebfc Mon Sep 17 00:00:00 2001 From: jdelguerrero Date: Tue, 21 Jul 2026 20:03:52 +0200 Subject: [PATCH 04/20] Remove duplicates and group software versions --- scripts/eb_metadata.py | 64 +++++++++++++++++++++++++----------------- 1 file changed, 38 insertions(+), 26 deletions(-) diff --git a/scripts/eb_metadata.py b/scripts/eb_metadata.py index b79aafdbe..3f31b96de 100644 --- a/scripts/eb_metadata.py +++ b/scripts/eb_metadata.py @@ -14,49 +14,61 @@ def homepage_link(text, url): options, cfg_settings = set_up_configuration(args=[]) -# for eb in software.rglob("*.eb"): -# print(eb) +for eb in software.rglob("*.eb"): + print(eb) -# try: -# ecs = process_easyconfig(str(eb), validate = False) + try: + ecs = process_easyconfig(str(eb), validate = False) -# for ecdict in ecs: -# ec = ecdict["ec"] + for ecdict in ecs: + ec = ecdict["ec"] -# package = { -# "name": ec["name"], -# "version": ec["version"], -# "homepage": ec["homepage"], -# "description": ec["description"], -# "moduleclass": ec["moduleclass"], -# } + package = { + "name": ec["name"], + "version": ec["version"], + "homepage": ec["homepage"], + "description": ec["description"], + "moduleclass": ec["moduleclass"], + } -# stack.append(package) + stack.append(package) -# except Exception as excpt: -# print(f"Failed: {eb}: {excpt}") - + except Exception as excpt: + print(f"Failed: {eb}: {excpt}") # with open("stack.json", "w") as fp: # json.dump(stack, fp, indent=2, default=str) -stack = pd.read_json("stack.json") +#stack = pd.read_json("stack.json") df = pd.DataFrame(stack) -# Create Markdown hyperlinks -df["software"] = df.apply( - lambda row: homepage_link(row["name"], row["homepage"]), - axis=1, -) - -# Clean descriptions +# Clean software descriptions df["description"] = ( df["description"] .fillna("") .str.replace(r"\s+", " ", regex=True) .str.strip() ) + + +# Combine versions for the same software +df = ( + df.groupby( + ["name", "homepage", "moduleclass", "description"], + as_index=False) + .agg({ + "version": lambda x: "
".join(sorted(set(x))) + }) +) + + +# Create Markdown hyperlinks +df["software"] = df.apply( + lambda row: homepage_link(row["name"], row["homepage"]), + axis=1, +) + #Reorder columns df = df[ [ @@ -75,4 +87,4 @@ def homepage_link(text, url): f.write(df.to_markdown(index=False)) # Keep JSON too -#df.to_json("stack.json", orient="records", indent=2) +df.to_json("stack.json", orient="records", indent=2) From 2a2053e671352a9f1437496fe9fa8c14c53f8fc7 Mon Sep 17 00:00:00 2001 From: jdelguerrero Date: Fri, 24 Jul 2026 18:07:09 +0200 Subject: [PATCH 05/20] [Docs] Add new tables with current software --- docs/software/swsets/2023b.md | 465 +++++++++++++++ docs/software/swsets/2024a.md | 349 +++++++++++ docs/software/swsets/2025a.md | 295 +++++++++ docs/software/swsets/stack.md | 1052 --------------------------------- mkdocs.yml | 8 +- 5 files changed, 1114 insertions(+), 1055 deletions(-) create mode 100644 docs/software/swsets/2023b.md create mode 100644 docs/software/swsets/2024a.md create mode 100644 docs/software/swsets/2025a.md delete mode 100644 docs/software/swsets/stack.md diff --git a/docs/software/swsets/2023b.md b/docs/software/swsets/2023b.md new file mode 100644 index 000000000..238858f8e --- /dev/null +++ b/docs/software/swsets/2023b.md @@ -0,0 +1,465 @@ +| Software | Version | Architectures | Clusters | Category | Description | +|:------------------------------------------------------------------------------------------------------|:-------------------|:------------------------------------------------------------------------------|:-----------|:-----------|:---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------| +| [4ti2](https://4ti2.github.io/) | 1.6.10 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowA software package for algebraic, geometric and combinatorial problems on linear spaces
| +| [ATK](https://developer.gnome.org/atk/) | 2.38.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | vis |
ShowATK provides the set of accessibility interfaces that are implemented by other toolkits and applications. Using the ATK interfaces, accessibility tools have full access to view and control running applications.
| +| [Abseil](https://abseil.io/) | 20240116.1 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowAbseil is an open-source collection of C++ library code designed to augment the C++ standard library. The Abseil library code is collected from Google's own C++ code base, has been extensively tested and used in production, and is the same code we depend on in our daily coding lives.
| +| [Apptainer](https://github.com/apptainer/apptainer) | 1.4.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowApptainer is an open source container platform designed to be simple, fast, and secure. Many container platforms are available, but Apptainer is designed for ease-of-use on shared systems and in high performance computing (HPC) environments
| +| [Armadillo](https://arma.sourceforge.net/) | 12.8.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | numlib |
ShowArmadillo is an open-source C++ linear algebra library (matrix maths) aiming towards a good balance between speed and ease of use. Integer, floating point and complex numbers are supported, as well as a subset of trigonometric and statistics functions.
| +| [Arrow](https://arrow.apache.org) | 16.1.0 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | data |
ShowApache Arrow (incl. PyArrow Python bindings), a cross-language development platform for in-memory data.
| +| [Autoconf](https://www.gnu.org/software/autoconf/) | 2.71 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | devel |
ShowAutoconf is an extensible package of M4 macros that produce shell scripts to automatically configure software source code packages. These scripts can adapt the packages to many kinds of UNIX-like systems without manual user intervention. Autoconf creates a configuration script for a package from a template file that lists the operating system features that the package can use, in the form of M4 macro calls.
| +| [Automake](https://www.gnu.org/software/automake/automake.html) | 1.16.5 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | devel |
ShowAutomake: GNU Standards-compliant Makefile generator
| +| [Autotools](https://autotools.io) | 20220317 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | devel |
ShowThis bundle collect the standard GNU build tools: Autoconf, Automake and libtool
| +| [BEDTools](https://bedtools.readthedocs.io/) | 2.31.1 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | bio |
ShowBEDTools: a powerful toolset for genome arithmetic. The BEDTools utilities allow one to address common genomics tasks such as finding feature overlaps and computing coverage. The utilities are largely based on four widely-used file formats: BED, GFF/GTF, VCF, and SAM/BAM.
| +| [BLAST+](https://blast.ncbi.nlm.nih.gov/) | 2.16.0 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | bio |
ShowBasic Local Alignment Search Tool, or BLAST, is an algorithm for comparing primary biological sequence information, such as the amino-acid sequences of different proteins or the nucleotides of DNA sequences.
| +| [BLIS](https://github.com/flame/blis/) | 0.9.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | numlib |
ShowBLIS is a portable software framework for instantiating high-performance BLAS-like dense linear algebra libraries.
| +| [BRiAl](https://github.com/BRiAl/BRiAl) | 1.2.12 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowBRiAl is the legacy version of PolyBoRi maintained by sagemath developers.
| +| [BamTools](https://github.com/pezmaster31/bamtools) | 2.5.2 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | bio |
ShowBamTools provides both a programmer's API and an end-user's toolkit for handling BAM files.
| +| [BeautifulSoup](https://www.crummy.com/software/BeautifulSoup) | 4.12.2 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | data |
ShowBeautiful Soup is a Python library designed for quick turnaround projects like screen-scraping.
| +| [Biopython](https://www.biopython.org) | 1.84 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | bio |
ShowBiopython is a set of freely available tools for biological computation written in Python by an international team of developers. It is a distributed collaborative effort to develop Python libraries and applications which address the needs of current and future work in bioinformatics.
| +| [Bison](https://www.gnu.org/software/bison) | 3.8.2 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lang |
ShowBison is a general-purpose parser generator that converts an annotated context-free grammar into a deterministic LR or generalized LR (GLR) parser employing LALR(1) parser tables.
| +| [Boost](https://www.boost.org/) | 1.83.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | devel |
ShowBoost provides free peer-reviewed portable C++ source libraries.
| +| [Bowtie2](https://github.com/BenLangmead/bowtie2) | 2.5.4 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | bio |
ShowBowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences. It is particularly good at aligning reads of about 50 up to 100s or 1,000s of characters, and particularly good at aligning to relatively long (e.g. mammalian) genomes. Bowtie 2 indexes the genome with an FM Index to keep its memory footprint small: for the human genome, its memory footprint is typically around 3.2 GB. Bowtie 2 supports gapped, local, and paired-end alignment modes.
| +| [Brotli-python](https://github.com/google/brotli) | 1.1.0 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowBrotli is a generic-purpose lossless compression algorithm that compresses data using a combination of a modern variant of the LZ77 algorithm, Huffman coding and 2nd order context modeling, with a compression ratio comparable to the best currently available general-purpose compression methods. It is similar in speed with deflate but offers more dense compression. The specification of the Brotli Compressed Data Format is defined in RFC 7932.
| +| [Brotli](https://github.com/google/brotli) | 1.1.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowBrotli is a generic-purpose lossless compression algorithm that compresses data using a combination of a modern variant of the LZ77 algorithm, Huffman coding and 2nd order context modeling, with a compression ratio comparable to the best currently available general-purpose compression methods. It is similar in speed with deflate but offers more dense compression. The specification of the Brotli Compressed Data Format is defined in RFC 7932.
| +| [Brunsli](https://github.com/google/brunsli/) | 0.1 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowBrunsli is a lossless JPEG repacking library.
| +| [CFITSIO](https://heasarc.gsfc.nasa.gov/fitsio/) | 4.3.1 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowCFITSIO is a library of C and Fortran subroutines for reading and writing data files in FITS (Flexible Image Transport System) data format.
| +| [CGAL](https://www.cgal.org/) | 5.6.1 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | numlib |
ShowThe goal of the CGAL Open Source Project is to provide easy access to efficient and reliable geometric algorithms in the form of a C++ library.
| +| [CMake](https://www.cmake.org) | 3.27.6 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | devel |
ShowCMake, the cross-platform, open-source build system. CMake is a family of tools designed to build, test and package software.
| +| [CP2K](https://www.cp2k.org/) | 2023.1 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | chem |
ShowCP2K is a freely available (GPL) program, written in Fortran 95, to perform atomistic and molecular simulations of solid state, liquid, molecular and biological systems. It provides a general framework for different methods such as e.g. density functional theory (DFT) using a mixed Gaussian and plane waves approach (GPW), and classical pair and many-body potentials.
| +| [CUDA](https://developer.nvidia.com/cuda-toolkit) | 12.6.0 | NVIDIA Tesla | iris | system |
ShowCUDA (formerly Compute Unified Device Architecture) is a parallel computing platform and programming model created by NVIDIA and implemented by the graphics processing units (GPUs) that they produce. CUDA gives developers access to the virtual instruction set and memory of the parallel computational elements in CUDA GPUs.
| +| [CUDD](https://github.com/ivmai/cudd) | 3.0.0 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowThe CUDD package is a package written in C for the manipulation of decision diagrams. It supports binary decision diagrams (BDDs), algebraic decision diagrams (ADDs), and Zero-Suppressed BDDs (ZDDs).
| +| [Catch2](https://github.com/catchorg/Catch2) | 2.13.9 | Intel Sapphire Rapids | iris | lib |
ShowA modern, C++-native, header-only, test framework for unit-tests, TDD and BDD - using C++11, C++14, C++17 and later
| +| [Catch2](https://github.com/catchorg/Catch2) | 2.13.9
3.8.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowA modern, C++-native, header-only, test framework for unit-tests, TDD and BDD - using C++11, C++14, C++17 and later
| +| [Cbc](https://github.com/coin-or/Cbc) | 2.10.11 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowCbc (Coin-or branch and cut) is an open-source mixed integer linear programming solver written in C++. It can be used as a callable library or using a stand-alone executable.
| +| [Cereal](https://uscilab.github.io/cereal/) | 1.3.2 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
Showcereal is a header-only C++11 serialization library. cereal takes arbitrary data types and reversibly turns them into different representations, such as compact binary encodings, XML, or JSON. cereal was designed to be fast, light-weight, and easy to extend - it has no external dependencies and can be easily bundled with other code or used standalone.
| +| [Cgl](https://github.com/coin-or/Cgl) | 0.60.8 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowThe COIN-OR Cut Generation Library (Cgl) is a collection of cut generators that can be used with other COIN-OR packages that make use of cuts, such as, among others, the linear solver Clp or the mixed integer linear programming solvers Cbc or BCP. Cgl uses the abstract class OsiSolverInterface (see Osi) to use or communicate with a solver. It does not directly call a solver.
| +| [Clp](https://github.com/coin-or/Clp) | 1.17.9 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowClp (Coin-or linear programming) is an open-source linear programming solver. It is primarily meant to be used as a callable library, but a basic, stand-alone executable version is also available.
| +| [CoCoALib](https://cocoa.dima.unige.it/cocoa/cocoalib/) | 0.99850 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowCoCoALib is a free GPL3 C++ library for doing Computations in Commutative Algebra.
| +| [CoinUtils](https://github.com/coin-or/CoinUtils) | 2.11.10 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowCoinUtils (Coin-OR Utilities) is an open-source collection of classes and functions that are generally useful to more than one COIN-OR project.
| +| [CubeGUI](https://www.scalasca.org/software/cube-4.x/download.html) | 4.8.2 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | perf |
ShowCube, which is used as performance report explorer for Scalasca and Score-P, is a generic tool for displaying a multi-dimensional performance space consisting of the dimensions (i) performance metric, (ii) call path, and (iii) system resource. Each dimension can be represented as a tree, where non-leaf nodes of the tree can be collapsed or expanded to achieve the desired level of granularity. This module provides the Cube graphical report explorer.
| +| [CubeLib](https://www.scalasca.org/software/cube-4.x/download.html) | 4.8.2 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | perf |
ShowCube, which is used as performance report explorer for Scalasca and Score-P, is a generic tool for displaying a multi-dimensional performance space consisting of the dimensions (i) performance metric, (ii) call path, and (iii) system resource. Each dimension can be represented as a tree, where non-leaf nodes of the tree can be collapsed or expanded to achieve the desired level of granularity. This module provides the Cube general purpose C++ library component and command-line tools.
| +| [CubeWriter](https://www.scalasca.org/software/cube-4.x/download.html) | 4.8.2 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | perf |
ShowCube, which is used as performance report explorer for Scalasca and Score-P, is a generic tool for displaying a multi-dimensional performance space consisting of the dimensions (i) performance metric, (ii) call path, and (iii) system resource. Each dimension can be represented as a tree, where non-leaf nodes of the tree can be collapsed or expanded to achieve the desired level of granularity. This module provides the Cube high-performance C writer library component.
| +| [Cython](https://cython.org/) | 3.0.10 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lang |
ShowCython is an optimising static compiler for both the Python programming language and the extended Cython programming language (based on Pyrex).
| +| [DBus](https://dbus.freedesktop.org/) | 1.15.8 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | devel |
ShowD-Bus is a message bus system, a simple way for applications to talk to one another. In addition to interprocess communication, D-Bus helps coordinate process lifecycle; it makes it simple and reliable to code a "single instance" application or daemon, and to launch applications and daemons on demand when their services are needed.
| +| [DendroPy](https://jeetsukumaran.github.io/DendroPy) | 5.0.1 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | bio |
ShowA Python library for phylogenetics and phylogenetic computing: reading, writing, simulation, processing and manipulation of phylogenetic trees (phylogenies) and characters.
| +| [Doxygen](https://www.doxygen.org) | 1.9.8 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | devel |
ShowDoxygen is a documentation system for C++, C, Java, Objective-C, Python, IDL (Corba and Microsoft flavors), Fortran, VHDL, PHP, C#, and to some extent D.
| +| [E-ANTIC](https://github.com/flatsurf/e-antic) | 2.0.2 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowE-ANTIC is a C/C++ library to deal with real embedded number fields built on top of ANTIC (https://github.com/wbhart/antic). Its aim is to have as fast as possible exact arithmetic operations and comparisons.
| +| [ECL](https://ecl.common-lisp.dev/) | 24.5.10 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | lang |
ShowECL (Embeddable Common-Lisp) is an interpreter of the Common-Lisp language as described in the X3J13 Ansi specification, featuring CLOS (Common-Lisp Object System), conditions, loops, etc, plus a translator to C, which can produce standalone executables.
| +| [Eigen](https://eigen.tuxfamily.org) | 3.4.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowEigen is a C++ template library for linear algebra: matrices, vectors, numerical solvers, and related algorithms.
| +| [FEniCS-Basix-Python](https://github.com/FEniCS/basix) | 0.9.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | cae |
ShowBasix is a finite element definition and tabulation runtime library - Python binding
| +| [FEniCS-Basix](https://github.com/FEniCS/basix) | 0.9.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | cae |
ShowBasix is a finite element definition and tabulation runtime library - C++ library
| +| [FEniCS-DOLFINx-Python](https://github.com/FEniCS/dolfinx) | 0.9.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | cae |
ShowDOLFINx is the computational environment of FEniCSx - Python binding
| +| [FEniCS-DOLFINx](https://github.com/FEniCS/dolfinx) | 0.9.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | cae |
ShowDOLFINx is the computational environment of FEniCSx - C++ library
| +| [FEniCS-FFCx](https://github.com/FEniCS/ffcx) | 0.9.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | cae |
ShowFFCx is a compiler for finite element variational forms
| +| [FEniCS-UFL](https://github.com/FEniCS/ufl) | 2024.2.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowThe Unified Form Language (UFL) is a domain-specific language for defining variational forms
| +| [FEniCS-ufcx](https://github.com/FEniCS/ffcx) | 0.9.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | cae |
ShowFFCx provides the ufcx.h interface header for generated finite element kernels, used by DOLFINx.
| +| [FFLAS-FFPACK](https://linbox-team.github.io/fflas-ffpack/) | 2.5.0 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowFinite Field Linear Algebra Subroutines / Package
| +| [FFTW.MPI](https://www.fftw.org) | 3.3.10 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | numlib |
ShowFFTW is a C subroutine library for computing the discrete Fourier transform (DFT) in one or more dimensions, of arbitrary input size, and of both real and complex data.
| +| [FFTW](https://www.fftw.org) | 3.3.10 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | numlib |
ShowFFTW is a C subroutine library for computing the discrete Fourier transform (DFT) in one or more dimensions, of arbitrary input size, and of both real and complex data.
| +| [FFmpeg](https://www.ffmpeg.org/) | 6.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | vis |
ShowA complete, cross-platform solution to record, convert and stream audio and video.
| +| [FLAC](https://xiph.org/flac/) | 1.4.3 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowFLAC stands for Free Lossless Audio Codec, an audio format similar to MP3, but lossless, meaning that audio is compressed in FLAC without any loss in quality.
| +| [FLINT](https://www.flintlib.org/) | 3.1.1 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowFLINT (Fast Library for Number Theory) is a C library in support of computations in number theory. Operations that can be performed include conversions, arithmetic, computing GCDs, factoring, solving linear systems, and evaluating special functions. In addition, FLINT provides various low-level routines for fast arithmetic. FLINT is extensively documented and tested.
| +| [FLTK](https://www.fltk.org) | 1.3.9 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | vis |
ShowFLTK is a cross-platform C++ GUI toolkit for UNIX/Linux (X11), Microsoft Windows, and MacOS X. FLTK provides modern GUI functionality without the bloat and supports 3D graphics via OpenGL and its built-in GLUT emulation.
| +| [FastTree](http://www.microbesonline.org/fasttree/) | 2.1.11 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | bio |
ShowFastTree infers approximately-maximum-likelihood phylogenetic trees from alignments of nucleotide or protein sequences. FastTree can handle alignments with up to a million of sequences in a reasonable amount of time and memory.
| +| [FlexiBLAS](https://gitlab.mpi-magdeburg.mpg.de/software/flexiblas-release) | 3.3.1 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowFlexiBLAS is a wrapper library that enables the exchange of the BLAS and LAPACK implementation used by a program without recompiling or relinking it.
| +| [FreeImage](http://freeimage.sourceforge.net) | 3.18.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | vis |
ShowFreeImage is an Open Source library project for developers who would like to support popular graphics image formats like PNG, BMP, JPEG, TIFF and others as needed by today's multimedia applications. FreeImage is easy to use, fast, multithreading safe.
| +| [FriBidi](https://github.com/fribidi/fribidi) | 1.0.13 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lang |
ShowThe Free Implementation of the Unicode Bidirectional Algorithm.
| +| [GCC](https://gcc.gnu.org/) | 13.2.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | compiler |
ShowThe GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,...).
| +| [GCCcore](https://gcc.gnu.org/) | 13.2.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | compiler |
ShowThe GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,...).
| +| [GDAL](https://www.gdal.org) | 3.9.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | data |
ShowGDAL is a translator library for raster geospatial data formats that is released under an X/MIT style Open Source license by the Open Source Geospatial Foundation. As a library, it presents a single abstract data model to the calling application for all supported formats. It also comes with a variety of useful commandline utilities for data translation and processing.
| +| [GDB](https://www.gnu.org/software/gdb/gdb.html) | 13.2 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | debugger |
ShowThe GNU Project Debugger
| +| [GDRCopy](https://github.com/NVIDIA/gdrcopy) | 2.4 | NVIDIA Tesla | iris | lib |
ShowA low-latency GPU memory copy library based on NVIDIA GPUDirect RDMA technology.
| +| [GEOS](https://trac.osgeo.org/geos) | 3.12.1 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowGEOS (Geometry Engine - Open Source) is a C++ port of the Java Topology Suite (JTS)
| +| [GLPK](https://www.gnu.org/software/glpk/) | 5.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowThe GLPK (GNU Linear Programming Kit) package is intended for solving large-scale linear programming (LP), mixed integer programming (MIP), and other related problems. It is a set of routines written in ANSI C and organized in the form of a callable library.
| +| [GLib](https://www.gtk.org/) | 2.78.1 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | vis |
ShowGLib is one of the base libraries of the GTK+ project
| +| [GMP-ECM](https://gitlab.inria.fr/zimmerma/ecm) | 7.0.5 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowYet another implementation of the Elliptic Curve Method.
| +| [GMP](https://gmplib.org/) | 6.3.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowGMP is a free library for arbitrary precision arithmetic, operating on signed integers, rational numbers, and floating point numbers.
| +| [GObject-Introspection](https://gi.readthedocs.io/en/latest/) | 1.78.1 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | devel |
ShowGObject introspection is a middleware layer between C libraries (using GObject) and language bindings. The C library can be scanned at compile time and generate a metadata file, in addition to the actual native C library. Then at runtime, language bindings can read this metadata and automatically provide bindings to call into the C library.
| +| [GROMACS](https://www.gromacs.org) | 2024.4 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | bio |
ShowGROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles. This is a CPU only build, containing both MPI and threadMPI binaries for both single and double precision. It also contains the gmxapi extension for the single precision MPI build.
| +| [GSL](https://www.gnu.org/software/gsl/) | 2.7 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | numlib |
ShowThe GNU Scientific Library (GSL) is a numerical library for C and C++ programmers. The library provides a wide range of mathematical routines such as random number generators, special functions and least-squares fitting.
| +| [GTK3](https://developer.gnome.org/gtk3/stable/) | 3.24.39 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | vis |
ShowGTK+ is the primary library used to construct user interfaces in GNOME. It provides all the user interface controls, or widgets, used in a common graphical application. Its object-oriented API allows you to construct user interfaces without dealing with the low-level details of drawing and device interaction.
| +| [Gdk-Pixbuf](https://docs.gtk.org/gdk-pixbuf/) | 2.42.10 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | vis |
ShowThe Gdk Pixbuf is a toolkit for image loading and pixel buffer manipulation. It is used by GTK+ 2 and GTK+ 3 to load and manipulate images. In the past it was distributed as part of GTK+ 2 but it was split off into a separate package in preparation for the change to GTK+ 3.
| +| [Ghostscript](https://ghostscript.com) | 10.02.1 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowGhostscript is a versatile processor for PostScript data with the ability to render PostScript to different targets. It used to be part of the cups printing stack, but is no longer used for that.
| +| [GitPython](https://gitpython.readthedocs.org) | 3.1.42 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowGitPython is a python library used to interact with Git repositories
| +| [Givaro](https://github.com/linbox-team/givaro) | 4.2.0 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowC++ library for arithmetic and algebraic computations
| +| [Go](https://www.golang.org) | 1.22.1 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | compiler |
ShowGo is an open source programming language that makes it easy to build simple, reliable, and efficient software.
| +| [Greenlet](https://github.com/python-greenlet/greenlet) | 3.0.3 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | devel |
ShowThe greenlet package is a spin-off of Stackless, a version of CPython that supports micro-threads called "tasklets". Tasklets run pseudo-concurrently (typically in a single or a few OS-level threads) and are synchronized with data exchanges on "channels". A "greenlet", on the other hand, is a still more primitive notion of micro-thread with no implicit scheduling; coroutines, in other words. This is useful when you want to control exactly when your code runs.
| +| [Gurobi](https://www.gurobi.com) | 11.0.0 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowThe Gurobi Optimizer is a state-of-the-art solver for mathematical programming. The solvers in the Gurobi Optimizer were designed from the ground up to exploit modern architectures and multi-core processors, using the most advanced implementations of the latest algorithms.
| +| [HDF5](https://portal.hdfgroup.org/display/support) | 1.14.3 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | data |
ShowHDF5 is a data model, library, and file format for storing and managing data. It supports an unlimited variety of datatypes, and is designed for flexible and efficient I/O and for high volume and complex data.
| +| [HDF](https://support.hdfgroup.org/products/hdf4/) | 4.2.16-2 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | data |
ShowHDF (also known as HDF4) is a library and multi-object file format for storing and managing data between machines.
| +| [HMMER](http://hmmer.org/) | 3.4 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | bio |
ShowHMMER is used for searching sequence databases for homologs of protein sequences, and for making protein sequence alignments. It implements methods using probabilistic models called profile hidden Markov models (profile HMMs). Compared to BLAST, FASTA, and other sequence alignment and database search tools based on older scoring methodology, HMMER aims to be significantly more accurate and more able to detect remote homologs because of the strength of its underlying mathematical models. In the past, this strength came at significant computational expense, but in the new HMMER3 project, HMMER is now essentially as fast as BLAST.
| +| [HOOMD-blue](https://github.com/glotzerlab/hoomd-blue) | 5.1.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | phys |
ShowHOOMD-blue is a Python package that runs simulations of particle systems on CPUs and GPUs. It performs hard particle Monte Carlo simulations of a variety of shape classes and molecular dynamics simulations of particles with a range of pair, bond, angle, and other potentials. Many features are targeted at the soft matter research community, though the code is general and capable of many types of particle simulations.
| +| [HTSlib](https://www.htslib.org/) | 1.19.1 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | bio |
ShowA C library for reading/writing high-throughput sequencing data. This package includes the utilities bgzip and tabix
| +| [HarfBuzz](https://www.freedesktop.org/wiki/Software/HarfBuzz) | 8.2.2 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | vis |
ShowHarfBuzz is an OpenType text shaping engine.
| +| [HyperQueue](https://it4innovations.github.io/hyperqueue/stable/) | 0.20.0 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowHyperQueue is a tool designed to simplify execution of large workflows (task graphs) on HPC clusters. It allows you to execute a large number of tasks in a simple way, without having to manually submit jobs into batch schedulers like Slurm or PBS. You just specify what you want to compute – HyperQueue will automatically ask for computational resources and dynamically load-balance tasks across all allocated nodes and cores. HyperQueue can also work without Slurm/PBS as a general task executor.
| +| [Hypre](https://computation.llnl.gov/projects/hypre-scalable-linear-solvers-multigrid-methods) | 2.31.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | numlib |
ShowHypre is a library for solving large, sparse linear systems of equations on massively parallel computers. The problems of interest arise in the simulation codes being developed at LLNL and elsewhere to study physical phenomena in the defense, environmental, energy, and biological sciences.
| +| [ICU](https://icu.unicode.org) | 74.1 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowICU is a mature, widely used set of C/C++ and Java libraries providing Unicode and Globalization support for software applications.
| +| [IML](https://cs.uwaterloo.ca/~astorjoh/iml.html) | 1.0.5 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowIML is a free library of C source code which implements algorithms for computing exact solutions to dense systems of linear equations over the integers.
| +| [IPython](https://ipython.org/index.html) | 8.17.2 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowIPython provides a rich architecture for interactive computing with: Powerful interactive shells (terminal and Qt-based). A browser-based notebook with support for code, text, mathematical expressions, inline plots and other rich media. Support for interactive data visualization and use of GUI toolkits. Flexible, embeddable interpreters to load into your own projects. Easy to use, high performance tools for parallel computing.
| +| [ISA-L](https://github.com/intel/isa-l) | 2.31.0 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowIntelligent Storage Acceleration Library
| +| [ISL](https://libisl.sourceforge.io) | 0.26 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
Showisl is a library for manipulating sets and relations of integer points bounded by linear constraints.
| +| [ImageMagick](https://www.imagemagick.org/) | 7.1.1-34 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | vis |
ShowImageMagick is a software suite to create, edit, compose, or convert bitmap images
| +| [Imath](https://imath.readthedocs.io/en/latest/) | 3.1.9 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowImath is a C++ and python library of 2D and 3D vector, matrix, and math operations for computer graphics
| +| [JasPer](https://www.ece.uvic.ca/~frodo/jasper/) | 4.0.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | vis |
ShowThe JasPer Project is an open-source initiative to provide a free software-based reference implementation of the codec specified in the JPEG-2000 Part-1 standard.
| +| [Java](http://openjdk.java.net) | 11.0.27 | Intel Broadwell | iris | lang |
ShowJava Platform, Standard Edition (Java SE) lets you develop and deploy Java applications on desktops and servers.
| +| [Java](http://openjdk.java.net) | 11.0.27
17.0.15 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | lang |
ShowJava Platform, Standard Edition (Java SE) lets you develop and deploy Java applications on desktops and servers.
| +| [Java](https://java.com/) | 11 | Intel Broadwell | iris | lang |
ShowJava Platform, Standard Edition (Java SE) lets you develop and deploy Java applications on desktops and servers.
| +| [Java](https://java.com/) | 11
17
21 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | lang |
ShowJava Platform, Standard Edition (Java SE) lets you develop and deploy Java applications on desktops and servers.
| +| [Java](https://openjdk.org) | 21.0.8 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | lang |
ShowJava Platform, Standard Edition (Java SE) lets you develop and deploy Java applications on desktops and servers.
| +| [JsonCpp](https://open-source-parsers.github.io/jsoncpp-docs/doxygen/index.html) | 1.9.5 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowJsonCpp is a C++ library that allows manipulating JSON values, including serialization and deserialization to and from strings. It can also preserve existing comment in unserialization/serialization steps, making it a convenient format to store user input files.
| +| [Julia](https://julialang.org) | 1.11.4 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | lang |
ShowJulia is a high-level, high-performance dynamic programming language for numerical computing
| +| [Jupyter-bundle](https://jupyter.org/) | 20240522 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowThis bundle collects a range of Jupyter interfaces (Lab, Notebook and nbclassic), extensions (Jupyter Server Proxy, Jupyter Resource Monitor, Jupyter Lmod) and the JupyterHub.
| +| [JupyterHub](https://jupyter.org) | 4.1.5 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowJupyterHub is a multiuser version of the Jupyter (IPython) notebook designed for centralized deployments in companies, university classrooms and research labs.
| +| [JupyterLab](https://jupyter.org/) | 4.2.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowJupyterLab is the next-generation user interface for Project Jupyter offering all the familiar building blocks of the classic Jupyter Notebook (notebook, terminal, text editor, file browser, rich outputs, etc.) in a flexible and powerful user interface. JupyterLab will eventually replace the classic Jupyter Notebook.
| +| [JupyterNotebook](https://jupyter.org/) | 7.2.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowThe Jupyter Notebook is the original web application for creating and sharing computational documents. It offers a simple, streamlined, document-centric experience.
| +| [KaHIP](https://kahip.github.io/) | 3.16 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowThe graph partitioning framework KaHIP -- Karlsruhe High Quality Partitioning.
| +| [LAME](http://lame.sourceforge.net/) | 3.100 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | data |
ShowLAME is a high quality MPEG Audio Layer III (MP3) encoder licensed under the LGPL.
| +| [LAMMPS](https://www.lammps.org) | 29Aug2024 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | chem |
ShowLAMMPS is a classical molecular dynamics code, and an acronym for Large-scale Atomic/Molecular Massively Parallel Simulator. LAMMPS has potentials for solid-state materials (metals, semiconductors) and soft matter (biomolecules, polymers) and coarse-grained or mesoscopic systems. It can be used to model atoms or, more generically, as a parallel particle simulator at the atomic, meso, or continuum scale. LAMMPS runs on single processors or in parallel using message-passing techniques and a spatial-decomposition of the simulation domain. The code is designed to be easy to modify or extend with new functionality.
| +| [LERC](https://github.com/Esri/lerc) | 4.0.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowLERC is an open-source image or raster format which supports rapid encoding and decoding for any pixel type (not just RGB or Byte). Users set the maximum compression error per pixel while encoding, so the precision of the original input image is preserved (within user defined error bounds).
| +| [LLVM](https://llvm.org/) | 14.0.6 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | compiler |
ShowThe LLVM Core libraries provide a modern source- and target-independent optimizer, along with code generation support for many popular CPUs (as well as some less common ones!) These libraries are built around a well specified code representation known as the LLVM intermediate representation ("LLVM IR"). The LLVM Core libraries are well documented, and it is particularly easy to invent your own language (or port an existing compiler) to use LLVM as an optimizer and code generator. This version include patches for llvmlite / numba.
| +| [LLVM](https://llvm.org/) | 16.0.6 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | compiler |
ShowThe LLVM Core libraries provide a modern source- and target-independent optimizer, along with code generation support for many popular CPUs (as well as some less common ones!) These libraries are built around a well specified code representation known as the LLVM intermediate representation ("LLVM IR"). The LLVM Core libraries are well documented, and it is particularly easy to invent your own language (or port an existing compiler) to use LLVM as an optimizer and code generator.
| +| [LMDB](https://symas.com/lmdb) | 0.9.31 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowLMDB is a fast, memory-efficient database. With memory-mapped files, it has the read performance of a pure in-memory database while retaining the persistence of standard disk-based databases.
| +| [LibRaw](https://www.libraw.org/) | 0.21.3 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | vis |
ShowThe LibRaw library provides a simple and unified interface for extracting out of RAW files generated by digital photo cameras the following: - RAW data (pixel values) - Metadata necessary for processing RAW (geometry, CFA / Bayer pattern, black level, white balance, etc.) - Embedded preview / thumbnail.
| +| [LibTIFF](https://libtiff.gitlab.io/libtiff/) | 4.6.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
Showtiff: Library and tools for reading and writing TIFF data files
| +| [Libint](https://github.com/evaleev/libint) | 2.7.2 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | chem |
ShowLibint library is used to evaluate the traditional (electron repulsion) and certain novel two-body matrix elements (integrals) over Cartesian Gaussian functions used in modern atomic and molecular theory.
| +| [LinBox](https://linalg.org/) | 1.7.0 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowC++ library for exact, high-performance linear algebra
| +| [LittleCMS](https://www.littlecms.com/) | 2.15 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | vis |
ShowLittle CMS intends to be an OPEN SOURCE small-footprint color management engine, with special focus on accuracy and performance.
| +| [Lua](https://www.lua.org/) | 5.4.6 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lang |
ShowLua is a powerful, fast, lightweight, embeddable scripting language. Lua combines simple procedural syntax with powerful data description constructs based on associative arrays and extensible semantics. Lua is dynamically typed, runs by interpreting bytecode for a register-based virtual machine, and has automatic memory management with incremental garbage collection, making it ideal for configuration, scripting, and rapid prototyping.
| +| [M4](https://www.gnu.org/software/m4/m4.html) | 1.4.19 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | devel |
ShowGNU M4 is an implementation of the traditional Unix macro processor. It is mostly SVR4 compatible although it has some extensions (for example, handling more than 9 positional parameters to macros). GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, etc.
| +| [MAFFT](https://mafft.cbrc.jp/alignment/software/source.html) | 7.526 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | bio |
ShowMAFFT is a multiple sequence alignment program for unix-like operating systems. It offers a range of multiple alignment methods, L-INS-i (accurate; for alignment of <∼200 sequences), FFT-NS-2 (fast; for alignment of <∼30,000 sequences), etc.
| +| [MDI](https://github.com/MolSSI-MDI/MDI_Library) | 1.4.29 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | chem |
ShowThe MolSSI Driver Interface (MDI) project provides a standardized API for fast, on-the-fly communication between computational chemistry codes. This greatly simplifies the process of implementing methods that require the cooperation of multiple software packages and enables developers to write a single implementation that works across many different codes. The API is sufficiently general to support a wide variety of techniques, including QM/MM, ab initio MD, machine learning, advanced sampling, and path integral MD, while also being straightforwardly extensible. Communication between codes is handled by the MDI Library, which enables tight coupling between codes using either the MPI or TCP/IP methods.
| +| [METIS](https://karypis.github.io/glaros/projects/gp.html) | 5.1.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowMETIS is a set of serial programs for partitioning graphs, partitioning finite element meshes, and producing fill reducing orderings for sparse matrices. The algorithms implemented in METIS are based on the multilevel recursive-bisection, multilevel k-way, and multi-constraint partitioning schemes.
| +| [MPC](http://www.multiprecision.org/) | 1.3.1 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowGnu Mpc is a C library for the arithmetic of complex numbers with arbitrarily high precision and correct rounding of the result. It extends the principles of the IEEE-754 standard for fixed precision real floating point numbers to complex numbers, providing well-defined semantics for every operation. At the same time, speed of operation at high precision is a major design goal.
| +| [MPFI](https://perso.ens-lyon.fr/nathalie.revol/software.html) | 1.5.4 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowMPFI stands for Multiple Precision Floating-point Interval library.
| +| [MPFR](https://www.mpfr.org) | 4.2.1 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowThe MPFR library is a C library for multiple-precision floating-point computations with correct rounding.
| +| [MPICH](https://www.mpich.org/) | 4.2.2 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | mpi |
ShowMPICH is a high-performance and widely portable implementation of the Message Passing Interface (MPI) standard (MPI-1, MPI-2 and MPI-3).
| +| [MUMPS](https://mumps-solver.org) | 5.6.1 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowA parallel sparse direct solver
| +| [Mako](https://www.makotemplates.org) | 1.2.4 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | devel |
ShowA super-fast templating language that borrows the best ideas from the existing templating languages
| +| [Mesa](https://www.mesa3d.org/) | 23.1.9 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | vis |
ShowMesa is an open-source implementation of the OpenGL specification - a system for rendering interactive 3D graphics.
| +| [Meson](https://mesonbuild.com) | 1.2.3 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowMeson is a cross-platform build system designed to be both as fast and as user friendly as possible.
| +| [NASM](https://www.nasm.us/) | 2.16.01 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lang |
ShowNASM: General-purpose x86 assembler
| +| [NCCL](https://developer.nvidia.com/nccl) | 2.20.5 | NVIDIA Tesla | iris | lib |
ShowThe NVIDIA Collective Communications Library (NCCL) implements multi-GPU and multi-node collective communication primitives that are performance optimized for NVIDIA GPUs.
| +| [NLopt](http://ab-initio.mit.edu/wiki/index.php/NLopt) | 2.7.1 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | numlib |
ShowNLopt is a free/open-source library for nonlinear optimization, providing a common interface for a number of different free optimization routines available online as well as original implementations of various other algorithms.
| +| [NSPR](https://developer.mozilla.org/en-US/docs/Mozilla/Projects/NSPR) | 4.35 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowNetscape Portable Runtime (NSPR) provides a platform-neutral API for system level and libc-like functions.
| +| [NSS](https://developer.mozilla.org/en-US/docs/Mozilla/Projects/NSS) | 3.94 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowNetwork Security Services (NSS) is a set of libraries designed to support cross-platform development of security-enabled client and server applications.
| +| [NTL](https://shoup.net/ntl/) | 11.5.1 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowNTL is a high-performance, portable C++ library providing data structures and algorithms for manipulating signed, arbitrary length integers, and for vectors, matrices, and polynomials over the integers and over finite fields.
| +| [NVHPC](https://developer.nvidia.com/hpc-sdk/) | 24.11 | NVIDIA Tesla | iris | compiler |
ShowC, C++ and Fortran compilers included with the NVIDIA HPC SDK (previously: PGI)
| +| [Nextflow](https://www.nextflow.io/) | 24.10.2 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowNextflow is a reactive workflow framework and a programming DSL that eases writing computational pipelines with complex data
| +| [Ninja](https://ninja-build.org/) | 1.11.1 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowNinja is a small build system with a focus on speed.
| +| [Normaliz](https://www.normaliz.uni-osnabrueck.de/) | 3.10.3 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowNormaliz is a open source tool for computations in affine monoids, vector configurations, rational polyhedra and rational cones. Normaliz now computes rational and algebraic polyhedra, i.e., polyhedra defined over real algebraic extensions of QQ.
| +| [OCaml](http://ocaml.org/) | 5.1.1 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | lang |
ShowOCaml is a general purpose industrial-strength programming language with an emphasis on expressiveness and safety. Developed for more than 20 years at Inria it benefits from one of the most advanced type systems and supports functional, imperative and object-oriented styles of programming.
| +| [OPARI2](https://www.score-p.org) | 2.0.8 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | perf |
ShowOPARI2, the successor of Forschungszentrum Juelich's OPARI, is a source-to-source instrumentation tool for OpenMP and hybrid codes. It surrounds OpenMP directives and runtime library calls with calls to the POMP2 measurement interface.
| +| [OSU-Micro-Benchmarks](https://mvapich.cse.ohio-state.edu/benchmarks/) | 7.5 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake, NVIDIA Tesla | aion, iris | perf |
ShowOSU Micro-Benchmarks
| +| [OTF2](https://www.score-p.org) | 3.0.3 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | perf |
ShowThe Open Trace Format 2 is a highly scalable, memory efficient event trace data format plus support library. It is the new standard trace format for Scalasca, Vampir, and TAU and is open for other tools.
| +| [OpenBLAS](http://www.openblas.net/) | 0.3.24 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | numlib |
ShowOpenBLAS is an optimized BLAS library based on GotoBLAS2 1.13 BSD version.
| +| [OpenEXR](https://www.openexr.com/) | 3.2.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | vis |
ShowOpenEXR is a high dynamic-range (HDR) image file format developed by Industrial Light & Magic for use in computer imaging applications
| +| [OpenFOAM](https://www.openfoam.com/) | v2312 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | cae |
ShowOpenFOAM is a free, open source CFD software package. OpenFOAM has an extensive range of features to solve anything from complex fluid flows involving chemical reactions, turbulence and heat transfer, to solid dynamics and electromagnetics.
| +| [OpenJPEG](https://www.openjpeg.org/) | 2.5.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowOpenJPEG is an open-source JPEG 2000 codec written in C language. It has been developed in order to promote the use of JPEG 2000, a still-image compression standard from the Joint Photographic Experts Group (JPEG). Since may 2015, it is officially recognized by ISO/IEC and ITU-T as a JPEG 2000 Reference Software.
| +| [OpenMPI](https://www.open-mpi.org/) | 4.1.6 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | mpi |
ShowThe Open MPI Project is an open source MPI-3 implementation.
| +| [OpenPGM](https://code.google.com/p/openpgm/) | 5.2.122 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | system |
ShowOpenPGM is an open source implementation of the Pragmatic General Multicast (PGM) specification in RFC 3208 available at www.ietf.org. PGM is a reliable and scalable multicast protocol that enables receivers to detect loss, request retransmission of lost data, or notify an application of unrecoverable loss. PGM is a receiver-reliable protocol, which means the receiver is responsible for ensuring all data is received, absolving the sender of reception responsibility.
| +| [OpenSSL](https://www.openssl.org/) | 1.1
3 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | system |
ShowThe OpenSSL Project is a collaborative effort to develop a robust, commercial-grade, full-featured, and Open Source toolchain implementing the Secure Sockets Layer (SSL v2/v3) and Transport Layer Security (TLS v1) protocols as well as a full-strength general purpose cryptography library.
| +| [Osi](https://github.com/coin-or/Osi) | 0.108.9 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowOsi (Open Solver Interface) provides an abstract base class to a generic linear programming (LP) solver, along with derived classes for specific solvers. Many applications may be able to use the Osi to insulate themselves from a specific LP solver. That is, programs written to the OSI standard may be linked to any solver with an OSI interface and should produce correct results. The OSI has been significantly extended compared to its first incarnation. Currently, the OSI supports linear programming solvers and has rudimentary support for integer programming.
| +| [PAPI](https://icl.cs.utk.edu/projects/papi/) | 7.1.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | perf |
ShowPAPI provides the tool designer and application engineer with a consistent interface and methodology for use of the performance counter hardware found in most major microprocessors. PAPI enables software engineers to see, in near real time, the relation between software performance and processor events. In addition Component PAPI provides access to a collection of components that expose performance measurement opportunites across the hardware and software stack.
| +| [PARI-GP](https://pari.math.u-bordeaux.fr) | 2.15.5 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowPARI/GP is a widely used computer algebra system designed for fast computations in number theory (factorizations, algebraic number theory, elliptic curves...), but also contains a large number of other useful functions to compute with mathematical entities such as matrices, polynomials, power series, algebraic numbers etc., and a lot of transcendental functions. PARI is also available as a C library to allow for faster computations.
| +| [PCRE2](https://www.pcre.org/) | 10.42 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | devel |
ShowThe PCRE library is a set of functions that implement regular expression pattern matching using the same syntax and semantics as Perl 5.
| +| [PCRE](https://www.pcre.org/) | 8.45 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | devel |
ShowThe PCRE library is a set of functions that implement regular expression pattern matching using the same syntax and semantics as Perl 5.
| +| [PDT](https://www.cs.uoregon.edu/research/pdt/) | 3.25.2 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | perf |
ShowProgram Database Toolkit (PDT) is a framework for analyzing source code written in several programming languages and for making rich program knowledge accessible to developers of static and dynamic analysis tools. PDT implements a standard program representation, the program database (PDB), that can be accessed in a uniform way through a class library supporting common PDB operations.
| +| [PETSc](https://www.mcs.anl.gov/petsc) | 3.22.5 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | numlib |
ShowPETSc, pronounced PET-see (the S is silent), is a suite of data structures and routines for the scalable (parallel) solution of scientific applications modeled by partial differential equations.
| +| [PLUMED](https://www.plumed.org) | 2.9.2 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | chem |
ShowPLUMED is an open source library for free energy calculations in molecular systems which works together with some of the most popular molecular dynamics engines. Free energy calculations can be performed as a function of many order parameters with a particular focus on biological problems, using state of the art methods such as metadynamics, umbrella sampling and Jarzynski-equation based steered MD. The software, written in C++, can be easily interfaced with both fortran and C/C++ codes.
| +| [PMIx](https://pmix.org/) | 4.2.6 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowProcess Management for Exascale Environments PMI Exascale (PMIx) represents an attempt to provide an extended version of the PMI standard specifically designed to support clusters up to and including exascale sizes. The overall objective of the project is not to branch the existing pseudo-standard definitions - in fact, PMIx fully supports both of the existing PMI-1 and PMI-2 APIs - but rather to (a) augment and extend those APIs to eliminate some current restrictions that impact scalability, and (b) provide a reference implementation of the PMI-server that demonstrates the desired level of scalability.
| +| [PROJ](https://proj.org) | 9.3.1 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowProgram proj is a standard Unix filter function which converts geographic longitude and latitude coordinates into cartesian coordinates
| +| [Pandoc](https://pandoc.org) | 3.6.2 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowIf you need to convert files from one markup format into another, pandoc is your swiss-army knife
| +| [Pango](https://www.pango.org/) | 1.51.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | vis |
ShowPango is a library for laying out and rendering of text, with an emphasis on internationalization. Pango can be used anywhere that text layout is needed, though most of the work on Pango so far has been done in the context of the GTK+ widget toolkit. Pango forms the core of text and font handling for GTK+-2.x.
| +| [ParMETIS](https://karypis.github.io/glaros/projects/gp.html) | 4.0.3 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowParMETIS is an MPI-based parallel library that implements a variety of algorithms for partitioning unstructured graphs, meshes, and for computing fill-reducing orderings of sparse matrices. ParMETIS extends the functionality provided by METIS and includes routines that are especially suited for parallel AMR computations and large scale numerical simulations. The algorithms implemented in ParMETIS are based on the parallel multilevel k-way graph-partitioning, adaptive repartitioning, and parallel multi-constrained partitioning schemes.
| +| [ParaView](https://www.paraview.org) | 5.12.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | vis |
ShowParaView is a scientific parallel visualizer.
| +| [Parsl](https://parsl-project.org/) | 2024.4.22 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowParsl extends parallelism in Python beyond a single computer. You can use Parsl just like Python's parallel executors but across multiple cores and nodes. However, the real power of Parsl is in expressing multi-step workflows of functions. Parsl lets you chain functions together and will launch each function as inputs and computing resources are available.
| +| [Perl-bundle-CPAN](https://www.perl.org/) | 5.38.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lang |
ShowA set of common packages from CPAN
| +| [Perl](https://www.perl.org/) | 5.38.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lang |
ShowLarry Wall's Practical Extraction and Report Language Includes a small selection of extra CPAN packages for core functionality.
| +| [Pillow](https://pillow.readthedocs.org/) | 10.2.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | vis |
ShowPillow is the 'friendly PIL fork' by Alex Clark and Contributors. PIL is the Python Imaging Library by Fredrik Lundh and Contributors.
| +| [PostgreSQL](https://www.postgresql.org/) | 16.1 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | data |
ShowPostgreSQL is a powerful, open source object-relational database system. It is fully ACID compliant, has full support for foreign keys, joins, views, triggers, and stored procedures (in multiple languages). It includes most SQL:2008 data types, including INTEGER, NUMERIC, BOOLEAN, CHAR, VARCHAR, DATE, INTERVAL, and TIMESTAMP. It also supports storage of binary large objects, including pictures, sounds, or video. It has native programming interfaces for C/C++, Java, .Net, Perl, Python, Ruby, Tcl, ODBC, among others, and exceptional documentation.
| +| [PuLP](https://github.com/coin-or/pulp) | 2.8.0 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowPuLP is an LP modeler written in Python. PuLP can generate MPS or LP files and call GLPK, COIN-OR CLP/CBC, CPLEX, GUROBI, MOSEK, XPRESS, CHOCO, MIPCL, SCIP to solve linear problems.
| +| [PyHMMER](https://github.com/althonos/pyhmmer) | 0.10.15 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | bio |
ShowHMMER is a biological sequence analysis tool that uses profile hidden Markov models to search for sequence homologs. HMMER3 is developed and maintained by the Eddy/Rivas Laboratory at Harvard University. pyhmmer is a Python package, implemented using the Cython language, that provides bindings to HMMER3. It directly interacts with the HMMER internals, which has the following advantages over CLI wrappers (like hmmer-py)
| +| [PyTorch](https://pytorch.org/) | 2.3.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | ai |
ShowTensors and Dynamic neural networks in Python with strong GPU acceleration. PyTorch is a deep learning framework that puts Python first.
| +| [PyYAML](https://github.com/yaml/pyyaml) | 6.0.1 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowPyYAML is a YAML parser and emitter for the Python programming language.
| +| [PyZMQ](https://www.zeromq.org/bindings:python) | 25.1.2 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | devel |
ShowPython bindings for ZeroMQ
| +| [PycURL](http://pycurl.io/) | 7.45.3 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowPycURL is a Python interface to libcurl. PycURL can be used to fetch objects identified by a URL from a Python program, similar to the urllib Python module. PycURL is mature, very fast, and supports a lot of features.
| +| [Pysam](https://github.com/pysam-developers/pysam) | 0.22.0 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | bio |
ShowPysam is a python module for reading and manipulating Samfiles. It's a lightweight wrapper of the samtools C-API. Pysam also includes an interface for tabix.
| +| [Python-bundle-PyPI](https://python.org/) | 2023.10 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lang |
ShowBundle of Python packages from PyPI
| +| [Python](https://python.org/) | 3.11.5 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lang |
ShowPython is a programming language that lets you work more quickly and integrate your systems more effectively.
| +| [QIIME2](https://qiime2.org) | 2024.10.1 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | bio |
ShowQIIME 2 is a powerful, extensible, and decentralized microbiome bioinformatics platform that is free, open source, and community developed.
| +| [Qhull](http://www.qhull.org) | 2020.2 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowQhull computes the convex hull, Delaunay triangulation, Voronoi diagram, halfspace intersection about a point, furthest-site Delaunay triangulation, and furthest-site Voronoi diagram. The source code runs in 2-d, 3-d, 4-d, and higher dimensions. Qhull implements the Quickhull algorithm for computing the convex hull.
| +| [Qt5](https://qt.io/) | 5.15.13 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | devel |
ShowQt is a comprehensive cross-platform C++ application framework.
| +| [Qt6](https://qt.io/) | 6.6.3 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | devel |
ShowQt is a comprehensive cross-platform C++ application framework.
| +| [R-bundle-Bioconductor](https://bioconductor.org) | 3.19 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | bio |
ShowBioconductor provides tools for the analysis and coprehension of high-throughput genomic data.
| +| [R-bundle-CRAN](https://www.r-project.org/) | 2024.06 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lang |
ShowBundle of R packages from CRAN
| +| [RE2](https://github.com/google/re2) | 2024-03-01 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowRE2 is a fast, safe, thread-friendly alternative to backtracking regular expression engines like those used in PCRE, Perl, and Python. It is a C++ library.
| +| [R](https://www.r-project.org/) | 4.4.1 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lang |
ShowR is a free software environment for statistical computing and graphics.
| +| [RapidJSON](https://rapidjson.org) | 1.1.0-20240409 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowA fast JSON parser/generator for C++ with both SAX/DOM style API
| +| [ReFrame](https://github.com/reframe-hpc/reframe) | 4.7.4 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | devel |
ShowReFrame is a framework for writing regression tests for HPC systems.
| +| [Rust](https://www.rust-lang.org) | 1.73.0
1.76.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lang |
ShowRust is a systems programming language that runs blazingly fast, prevents segfaults, and guarantees thread safety.
| +| [SAMtools](https://www.htslib.org/) | 1.19.2 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | bio |
ShowSAM Tools provide various utilities for manipulating alignments in the SAM format, including sorting, merging, indexing and generating alignments in a per-position format.
| +| [SCOTCH](https://www.labri.fr/perso/pelegrin/scotch/) | 7.0.4 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowSoftware package and libraries for sequential and parallel graph partitioning, static mapping, and sparse matrix block ordering, and sequential mesh and hypergraph partitioning.
| +| [SDL2](https://www.libsdl.org/) | 2.28.5 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowSDL: Simple DirectMedia Layer, a cross-platform multimedia library
| +| [SIONlib](https://www.fz-juelich.de/ias/jsc/EN/Expertise/Support/Software/SIONlib/_node.html) | 1.7.7 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowSIONlib is a scalable I/O library for parallel access to task-local files. The library not only supports writing and reading binary data to or from several thousands of processors into a single or a small number of physical files, but also provides global open and close functions to access SIONlib files in parallel. This package provides a stripped-down installation of SIONlib for use with performance tools (e.g., Score-P), with renamed symbols to avoid conflicts when an application using SIONlib itself is linked against a tool requiring a different SIONlib version.
| +| [SLEPc](https://slepc.upv.es) | 3.22.2 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | numlib |
ShowSLEPc (Scalable Library for Eigenvalue Problem Computations) is a software library for the solution of large scale sparse eigenvalue problems on parallel computers. It is an extension of PETSc and can be used for either standard or generalized eigenproblems, with real or complex arithmetic. It can also be used for computing a partial SVD of a large, sparse, rectangular matrix, and to solve quadratic eigenvalue problems.
| +| [SQLAlchemy](https://www.sqlalchemy.org/) | 2.0.29 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowSQLAlchemy is the Python SQL toolkit and Object Relational Mapper that gives application developers the full power and flexibility of SQL. SQLAlchemy provides a full suite of well known enterprise-level persistence patterns, designed for efficient and high-performing database access, adapted into a simple and Pythonic domain language.
| +| [SQLite](https://www.sqlite.org/) | 3.43.1 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | devel |
ShowSQLite: SQL Database Engine in a C Library
| +| [SWIG](http://www.swig.org/) | 4.1.1 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | devel |
ShowSWIG is a software development tool that connects programs written in C and C++ with a variety of high-level programming languages.
| +| [SYMMETRICA](https://www.algorithm.uni-bayreuth.de/en/research/SYMMETRICA) | 2.0 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowSymmetrica is a Collection of C routines for representation theory.
| +| [Sagemath](https://doc.sagemath.org/html/en/index.html) | 10.4 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowSage is open source mathematical software released under the GNU General Public Licence GPLv2+, and includes packages that have compatible software licenses. People all around the globe have contributed to the development of Sage. Full documentation is available online.
| +| [ScaFaCoS](http://www.scafacos.de/) | 1.0.4 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowScaFaCoS is a library of scalable fast coulomb solvers.
| +| [ScaLAPACK](https://www.netlib.org/scalapack/) | 2.2.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | numlib |
ShowThe ScaLAPACK (or Scalable LAPACK) library includes a subset of LAPACK routines redesigned for distributed memory MIMD parallel computers.
| +| [Scalasca](https://www.scalasca.org/) | 2.6.1 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | perf |
ShowScalasca is a software tool that supports the performance optimization of parallel programs by measuring and analyzing their runtime behavior. The analysis identifies potential performance bottlenecks -- in particular those concerning communication and synchronization -- and offers guidance in exploring their causes.
| +| [SciPy-bundle](https://python.org/) | 2023.11 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lang |
ShowBundle of Python packages for scientific software
| +| [Score-P](https://www.score-p.org) | 8.4 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | perf |
ShowThe Score-P measurement infrastructure is a highly scalable and easy-to-use tool suite for profiling, event tracing, and online analysis of HPC applications.
| +| [Seaborn](https://seaborn.pydata.org/) | 0.13.2 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | bio |
ShowSeaborn is a Python visualization library based on matplotlib. It provides a high-level interface for drawing attractive statistical graphics.
| +| [SharedMeatAxe](https://github.com/simon-king-jena/SharedMeatAxe) | 1.0.1 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowThis is an autotoolized shared library version of C MeatAxe 2.4.24, a set of programs for computing with modular representations.
| +| [Singular](https://www.singular.uni-kl.de/) | 4.4.0 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowSingular is a computer algebra system for polynomial computations, with special emphasis on commutative and non-commutative algebra, algebraic geometry, and singularity theory.
| +| [Spack](https://spack.io/) | 0.21.2 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | devel |
ShowSpack is a package manager for supercomputers, Linux, and macOS. It makes installing scientific software easy. With Spack, you can build a package with multiple versions, configurations, platforms, and compilers, and all of these builds can coexist on the same machine.
| +| [Spark](https://spark.apache.org) | 3.5.4 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | devel |
ShowSpark is Hadoop MapReduce done in memory
| +| [SuiteSparse](https://faculty.cse.tamu.edu/davis/suitesparse.html) | 7.7.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | numlib |
ShowSuiteSparse is a collection of libraries to manipulate sparse matrices.
| +| [SuperLU_DIST](https://crd-legacy.lbl.gov/~xiaoye/SuperLU/) | 8.2.1 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | numlib |
ShowSuperLU is a general purpose library for the direct solution of large, sparse, nonsymmetric systems of linear equations on high performance machines.
| +| [Szip](https://support.hdfgroup.org/doc_resource/SZIP/) | 2.1.1 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowSzip compression software, providing lossless compression of scientific data
| +| [Tcl](https://www.tcl.tk/) | 8.6.13 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lang |
ShowTcl (Tool Command Language) is a very powerful but easy to learn dynamic programming language, suitable for a very wide range of uses, including web and desktop applications, networking, administration, testing and many more.
| +| [Tk](https://www.tcl.tk/) | 8.6.13 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | vis |
ShowTk is an open source, cross-platform widget toolchain that provides a library of basic elements for building a graphical user interface (GUI) in many different programming languages.
| +| [Tkinter](https://python.org/) | 3.11.5 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lang |
ShowTkinter module, built with the Python buildsystem
| +| [UCC-CUDA](https://www.openucx.org/) | 1.2.0 | NVIDIA Tesla | iris | lib |
ShowUCC (Unified Collective Communication) is a collective communication operations API and library that is flexible, complete, and feature-rich for current and emerging programming models and runtimes. This module adds the UCC CUDA support.
| +| [UCC](https://www.openucx.org/) | 1.2.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowUCC (Unified Collective Communication) is a collective communication operations API and library that is flexible, complete, and feature-rich for current and emerging programming models and runtimes.
| +| [UCX-CUDA](http://www.openucx.org/) | 1.15.0 | NVIDIA Tesla | iris | lib |
ShowUnified Communication X An open-source production grade communication framework for data centric and high-performance applications This module adds the UCX CUDA support.
| +| [UCX](https://www.openucx.org/) | 1.15.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowUnified Communication X An open-source production grade communication framework for data centric and high-performance applications
| +| [UDUNITS](https://www.unidata.ucar.edu/software/udunits/) | 2.2.28 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | phys |
ShowUDUNITS supports conversion of unit specifications between formatted and binary forms, arithmetic manipulation of units, and conversion of values between compatible scales of measurement.
| +| [UnZip](http://www.info-zip.org/UnZip.html) | 6.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowUnZip is an extraction utility for archives compressed in .zip format (also called "zipfiles"). Although highly compatible both with PKWARE's PKZIP and PKUNZIP utilities for MS-DOS and with Info-ZIP's own Zip program, our primary objectives have been portability and non-MSDOS functionality.
| +| [UniFrac](https://github.com/biocore/unifrac-binaries) | 1.4 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | bio |
ShowUniFrac is the de facto repository for high-performance phylogenetic diversity calculations. The methods in this repository are based on an implementation of the Strided State UniFrac algorithm which is faster, and uses less memory than Fast UniFrac. Strided State UniFrac supports Unweighted UniFrac, Weighted UniFrac, Generalized UniFrac, Variance Adjusted UniFrac and meta UniFrac, in both double and single precision (fp32). This repository also includes Stacked Faith (manuscript in preparation), a method for calculating Faith's PD that is faster and uses less memory than the Fast UniFrac-based reference implementation.
| +| [VSEARCH](https://github.com/torognes/vsearch) | 2.30.0 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | bio |
ShowVSEARCH supports de novo and reference based chimera detection, clustering, full-length and prefix dereplication, rereplication, reverse complementation, masking, all-vs-all pairwise global alignment, exact and global alignment searching, shuffling, subsampling and sorting. It also supports FASTQ file analysis, filtering, conversion and merging of paired-end reads.
| +| [VTK](https://www.vtk.org) | 9.3.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | vis |
ShowThe Visualization Toolkit (VTK) is an open-source, freely available software system for 3D computer graphics, image processing and visualization. VTK consists of a C++ class library and several interpreted interface layers including Tcl/Tk, Java, and Python. VTK supports a wide variety of visualization algorithms including: scalar, vector, tensor, texture, and volumetric methods; and advanced modeling techniques such as: implicit modeling, polygon reduction, mesh smoothing, cutting, contouring, and Delaunay triangulation.
| +| [Valgrind](https://valgrind.org) | 3.23.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | debugger |
ShowValgrind: Debugging and profiling tools
| +| [Voro++](http://math.lbl.gov/voro++/) | 0.4.6 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowVoro++ is a software library for carrying out three-dimensional computations of the Voronoi tessellation. A distinguishing feature of the Voro++ library is that it carries out cell-based calculations, computing the Voronoi cell for each particle individually. It is particularly well-suited for applications that rely on cell-based statistics, where features of Voronoi cells (eg. volume, centroid, number of faces) can be used to analyze a system of particles.
| +| [Wayland](https://wayland.freedesktop.org/) | 1.22.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | vis |
ShowWayland is a project to define a protocol for a compositor to talk to its clients as well as a library implementation of the protocol. The compositor can be a standalone display server running on Linux kernel modesetting and evdev input devices, an X application, or a wayland client itself. The clients can be traditional applications, X servers (rootless or fullscreen) or other display servers.
| +| [X11](https://www.x.org) | 20231019 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | vis |
ShowThe X Window System (X11) is a windowing system for bitmap displays
| +| [XZ](https://tukaani.org/xz/) | 5.4.4 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
Showxz: XZ utilities
| +| [Xerces-C++](https://xerces.apache.org/xerces-c/) | 3.2.5 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowXerces-C++ is a validating XML parser written in a portable subset of C++. Xerces-C++ makes it easy to give your application the ability to read and write XML data. A shared library is provided for parsing, generating, manipulating, and validating XML documents using the DOM, SAX, and SAX2 APIs.
| +| [Xvfb](https://www.x.org/releases/X11R7.6/doc/man/man1/Xvfb.1.xhtml) | 21.1.9 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | vis |
ShowXvfb is an X server that can run on machines with no display hardware and no physical input devices. It emulates a dumb framebuffer using virtual memory.
| +| [Yasm](https://www.tortall.net/projects/yasm/) | 1.3.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lang |
ShowYasm: Complete rewrite of the NASM assembler with BSD license
| +| [Z3](https://github.com/Z3Prover/z3) | 4.13.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowZ3 is a theorem prover from Microsoft Research with support for bitvectors, booleans, arrays, floating point numbers, strings, and other data types. This module includes z3-solver, the Python interface of Z3.
| +| [ZeroMQ](https://www.zeromq.org/) | 4.3.5 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | devel |
ShowZeroMQ looks like an embeddable networking library but acts like a concurrency framework. It gives you sockets that carry atomic messages across various transports like in-process, inter-process, TCP, and multicast. You can connect sockets N-to-N with patterns like fanout, pub-sub, task distribution, and request-reply. It's fast enough to be the fabric for clustered products. Its asynchronous I/O model gives you scalable multicore applications, built as asynchronous message-processing tasks. It has a score of language APIs and runs on most operating systems.
| +| [aiohttp](https://github.com/aio-libs/aiohttp) | 3.9.5 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowAsynchronous HTTP client/server framework for asyncio and Python.
| +| [alsa-lib](https://www.alsa-project.org) | 1.2.11 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowThe Advanced Linux Sound Architecture (ALSA) provides audio and MIDI functionality to the Linux operating system.
| +| [archspec](https://github.com/archspec/archspec) | 0.2.2 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowA library for detecting, labeling, and reasoning about microarchitectures
| +| [arpack-ng](https://github.com/opencollab/arpack-ng) | 3.9.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | numlib |
ShowARPACK is a collection of Fortran77 subroutines designed to solve large scale eigenvalue problems.
| +| [arrow-R](https://cran.r-project.org/web/packages/arrow) | 16.1.0 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowR interface to the Apache Arrow C++ library
| +| [assimp](https://github.com/assimp/assimp) | 5.3.1 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | vis |
ShowOpen Asset Import Library (assimp) is a library to import and export various 3d-model-formats including scene-post-processing to generate missing render data.
| +| [at-spi2-atk](https://wiki.gnome.org/Accessibility) | 2.38.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | vis |
ShowAT-SPI 2 toolkit bridge
| +| [at-spi2-core](https://wiki.gnome.org/Accessibility) | 2.50.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | vis |
ShowAssistive Technology Service Provider Interface.
| +| [attr](https://savannah.nongnu.org/projects/attr) | 2.5.2 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowCommands for Manipulating Filesystem Extended Attributes
| +| [bcrypt](https://github.com/pyca/bcrypt/) | 4.1.3 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowAcceptable password hashing for your software and your servers (but you should really use argon2id or scrypt)
| +| [binutils](https://directory.fsf.org/project/binutils/) | 2.40 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
Showbinutils: GNU binary utilities
| +| [biom-format](https://biom-format.org) | 2.1.16 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | bio |
ShowThe BIOM file format (canonically pronounced biome) is designed to be a general-use format for representing biological sample by observation contingency tables. BIOM is a recognized standard for the Earth Microbiome Project and is a Genomics Standards Consortium supported project.
| +| [bliss](https://users.aalto.fi/~tjunttil/bliss/) | 0.77 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowBliss is an open-source tool for computing canonical labelings and automorphism groups of graphs.
| +| [bokeh](https://github.com/bokeh/bokeh) | 3.4.1 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowStatistical and novel interactive HTML plots for Python
| +| [bzip2](https://sourceware.org/bzip2) | 1.0.8 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
Showbzip2 is a freely available, patent free, high-quality data compressor. It typically compresses files to within 10% to 15% of the best available techniques (the PPM family of statistical compressors), whilst being around twice as fast at compression and six times faster at decompression.
| +| [cURL](https://curl.haxx.se) | 8.3.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
Showlibcurl is a free and easy-to-use client-side URL transfer library, supporting DICT, FILE, FTP, FTPS, Gopher, HTTP, HTTPS, IMAP, IMAPS, LDAP, LDAPS, POP3, POP3S, RTMP, RTSP, SCP, SFTP, SMTP, SMTPS, Telnet and TFTP. libcurl supports SSL certificates, HTTP POST, HTTP PUT, FTP uploading, HTTP form based upload, proxies, cookies, user+password authentication (Basic, Digest, NTLM, Negotiate, Kerberos), file transfer resume, http proxy tunneling and more.
| +| [cairo](https://cairographics.org) | 1.18.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | vis |
ShowCairo is a 2D graphics library with support for multiple output devices. Currently supported output targets include the X Window System (via both Xlib and XCB), Quartz, Win32, image buffers, PostScript, PDF, and SVG file output. Experimental backends include OpenGL, BeOS, OS/2, and DirectFB
| +| [cddlib](https://github.com/cddlib/cddlib) | 0.94m | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowAn efficient implementation of the Double Description Method
| +| [cffi](https://cffi.readthedocs.io/en/latest/) | 1.15.1 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowC Foreign Function Interface for Python. Interact with almost any C code from Python, based on C-like declarations that you can often copy-paste from header files or documentation.
| +| [cliquer](https://users.aalto.fi/~pat/cliquer.html) | 1.21 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowCliquer is a set of C routines for finding cliques in an arbitrary weighted graph. It uses an exact branch-and-bound algorithm developed by Patric Ostergard. It is designed with the aim of being efficient while still being flexible and easy to use.
| +| [configurable-http-proxy](https://github.com/jupyterhub/configurable-http-proxy) | 4.6.1 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowHTTP proxy for node.js including a REST API for updating the routing table. Developed as a part of the Jupyter Hub multi-user server.
| +| [coverage](https://coverage.readthedocs.io) | 7.4.4 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowCoverage.py is a tool for measuring code coverage of Python programs. It monitors your program, noting which parts of the code have been executed, then analyzes the source to identify code that could have been executed but was not.
| +| [coxeter](https://github.com/tscrim/coxeter) | 20180226 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowA library for the study of combinatorial aspects of Coxeter group theory
| +| [cpio](https://savannah.gnu.org/projects/cpio/) | 2.15 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowThe cpio package contains tools for archiving.
| +| [cppy](https://github.com/nucleic/cppy) | 1.2.1 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowA small C++ header library which makes it easier to write Python extension modules. The primary feature is a PyObject smart pointer which automatically handles reference counting and provides convenience methods for performing common object operations.
| +| [cppyy](https://cppyy.readthedocs.io) | 3.1.2 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | lang |
Showcppyy is an automatic, run-time, Python-C++ bindings generator, for calling C++ from Python and Python from C++.
| +| [cryptography](https://github.com/pyca/cryptography) | 41.0.5 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
Showcryptography is a package designed to expose cryptographic primitives and recipes to Python developers.
| +| [cutadapt](https://opensource.scilifelab.se/projects/cutadapt/) | 5.0 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | bio |
ShowCutadapt finds and removes adapter sequences, primers, poly-A tails and other types of unwanted sequence from your high-throughput sequencing reads.
| +| [cysignals](https://pypi.org/project/cysignals/) | 1.11.4 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | lang |
ShowThe cysignals package provides mechanisms to handle interrupts (and other signals and errors) in Cython code.
| +| [debugpy](https://aka.ms/debugpy) | 1.8.1 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | debugger |
ShowAn implementation of the Debug Adapter Protocol for Python
| +| [deprecation](http://deprecation.readthedocs.io) | 2.1.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowThe deprecation library provides a deprecated decorator and a fail_if_not_removed decorator for your tests.
| +| [dill](https://pypi.org/project/dill/) | 0.3.8 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | data |
Showdill extends python's pickle module for serializing and de-serializing python objects to the majority of the built-in python types. Serialization is the process of converting an object to a byte stream, and the inverse of which is converting a byte stream back to on python object hierarchy.
| +| [double-conversion](https://github.com/google/double-conversion) | 3.3.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowEfficient binary-decimal and decimal-binary conversion routines for IEEE doubles.
| +| [eclib](https://github.com/JohnCremona/eclib) | 20240408 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowThe eclib package includes mwrank (for 2-descent on elliptic curves over Q) and modular symbol code used to create the elliptic curve database.
| +| [expat](https://libexpat.github.io) | 2.5.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowExpat is an XML parser library written in C. It is a stream-oriented parser in which an application registers handlers for things the parser might find in the XML document (like start tags).
| +| [expecttest](https://github.com/ezyang/expecttest) | 0.2.1 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowThis library implements expect tests (also known as "golden" tests). Expect tests are a method of writing tests where instead of hard-coding the expected output of a test, you run the test to get the output, and the test framework automatically populates the expected output. If the output of the test changes, you can rerun the test with the environment variable EXPECTTEST_ACCEPT=1 to automatically update the expected output.
| +| [ffnvcodec](https://git.videolan.org/?p=ffmpeg/nv-codec-headers.git) | 12.1.14.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowFFmpeg nvidia headers. Adds support for nvenc and nvdec. Requires Nvidia GPU and drivers to be present (picked up dynamically).
| +| [flex](http://flex.sourceforge.net/) | 2.6.4 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lang |
ShowFlex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner, sometimes called a tokenizer, is a program which recognizes lexical patterns in text.
| +| [flex](https://github.com/westes/flex) | 2.6.4 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lang |
ShowFlex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner, sometimes called a tokenizer, is a program which recognizes lexical patterns in text.
| +| [flit](https://github.com/pypa/flit) | 3.9.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowA simple packaging tool for simple packages.
| +| [fontconfig](https://www.freedesktop.org/wiki/Software/fontconfig/) | 2.14.2 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | vis |
ShowFontconfig is a library designed to provide system-wide font configuration, customization and application access.
| +| [foss](https://docs.easybuild.io/common-toolchains/#common_toolchains_foss) | 2023b | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | toolchain |
ShowGNU Compiler Collection (GCC) based compiler toolchain, including OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK.
| +| [fplll](https://github.com/fplll/fplll) | 5.4.5 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
Showfplll contains implementations of several lattice algorithms. The implementation relies on floating-point orthogonalization, and the 1982 paper from Lenstra, Lenstra Jr. and Lovasz (LLL) is central to the code, hence the name.
| +| [fpylll](https://pypi.org/project/fpylll) | 0.6.1 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowA Python wrapper for fplll.
| +| [freetype](https://www.freetype.org) | 2.13.2 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | vis |
ShowFreeType 2 is a software font engine that is designed to be small, efficient, highly customizable, and portable while capable of producing high-quality output (glyph images). It can be used in graphics libraries, display servers, font conversion tools, text image generation tools, and many other products as well.
| +| [gap](https://www.gap-system.org) | 4.13.0 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowGAP is a system for computational discrete algebra, with particular emphasis on Computational Group Theory.
| +| [gc](https://hboehm.info/gc/) | 8.2.6 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowThe Boehm-Demers-Weiser conservative garbage collector can be used as a garbage collecting replacement for C malloc or C++ new.
| +| [gengetopt](https://www.gnu.org/software/gengetopt/gengetopt.html) | 2.23 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowGengetopt is a tool to write command line option parsing code for C programs.
| +| [gettext](https://www.gnu.org/software/gettext/) | 0.22 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowGNU 'gettext' is an important step for the GNU Translation Project, as it is an asset on which we may build many other steps. This package offers to programmers, translators, and even users, a well integrated set of tools and documentation
| +| [gfbf]((none)) | 2023b | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | toolchain |
ShowGNU Compiler Collection (GCC) based compiler toolchain, including FlexiBLAS (BLAS and LAPACK support) and (serial) FFTW.
| +| [gffutils](https://github.com/daler/gffutils) | 0.13 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | bio |
ShowGffutils is a Python package for working with and manipulating the GFF and GTF format files typically used for genomic annotations.
| +| [giac](https://www-fourier.ujf-grenoble.fr/~parisse/giac.html) | 1.9.0-99 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowGiac is a C++ library, it is the CAS computing kernel. It may be used inside other C++ programs, and also Python, Java and Javascript programs.
| +| [giflib](http://giflib.sourceforge.net/) | 5.2.1 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
Showgiflib is a library for reading and writing gif images. It is API and ABI compatible with libungif which was in wide use while the LZW compression algorithm was patented.
| +| [git](https://git-scm.com) | 2.42.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowGit is a free and open source distributed version control system designed to handle everything from small to very large projects with speed and efficiency.
| +| [gmpy2](https://github.com/aleaxit/gmpy) | 2.1.5 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowGMP/MPIR, MPFR, and MPC interface to Python 2.6+ and 3.x
| +| [gmsh](https://gmsh.info/) | 4.12.2 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowGmsh is a 3D finite element grid generator with a build-in CAD engine and post-processor.
| +| [gnupg-bundle](https://www.gnupg.org/software/index.html) | 20240306 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | system |
ShowGnuPG — The Universal Crypto Engine
| +| [gnuplot](http://gnuplot.sourceforge.net) | 6.0.1 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | vis |
ShowPortable interactive, function plotting utility
| +| [gocryptfs](https://nuetzlich.net/gocryptfs/) | 2.5.4 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowAn encrypted overlay filesystem written in Go and built on top the go-fuse FUSE library.
| +| [gompi]((none)) | 2023b | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | toolchain |
ShowGNU Compiler Collection (GCC) based compiler toolchain, including OpenMPI for MPI support.
| +| [googletest](https://github.com/google/googletest) | 1.14.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowGoogle's framework for writing C++ tests on a variety of platforms
| +| [gperf](https://www.gnu.org/software/gperf/) | 3.1 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | devel |
ShowGNU gperf is a perfect hash function generator. For a given list of strings, it produces a hash function and hash table, in form of C or C++ code, for looking up a value depending on the input string. The hash function is perfect, which means that the hash table has no collisions, and the hash table lookup needs a single string comparison only.
| +| [graphite2](https://scripts.sil.org/cms/scripts/page.php?site_id=projects&item_id=graphite_home) | 1.3.14 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowGraphite is a "smart font" system developed specifically to handle the complexities of lesser-known languages of the world.
| +| [groff](https://www.gnu.org/software/groff) | 1.23.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowGroff (GNU troff) is a typesetting system that reads plain text mixed with formatting commands and produces formatted output.
| +| [gzip](https://www.gnu.org/software/gzip/) | 1.13 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
Showgzip (GNU zip) is a popular data compression program as a replacement for compress
| +| [h5py](https://www.h5py.org/) | 3.11.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | data |
ShowHDF5 for Python (h5py) is a general-purpose Python interface to the Hierarchical Data Format library, version 5. HDF5 is a versatile, mature scientific software library designed for the fast, flexible storage of enormous amounts of data.
| +| [hatch-jupyter-builder](https://hatch-jupyter-builder.readthedocs.io) | 0.9.1 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowHatch Jupyter Builder is a plugin for the hatchling Python build backend. It is primarily targeted for package authors who are providing JavaScript as part of their Python packages. Typical use cases are Jupyter Lab Extensions and Jupyter Widgets.
| +| [hatchling](https://hatch.pypa.io) | 1.18.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowExtensible, standards compliant build backend used by Hatch, a modern, extensible Python project manager.
| +| [help2man](https://www.gnu.org/software/help2man/) | 1.49.3 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
Showhelp2man produces simple manual pages from the '--help' and '--version' output of other commands.
| +| [hevea](http://pauillac.inria.fr/~maranget/hevea/) | 2.36 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | devel |
ShowA quite complete and fast LATEX to HTML translator
| +| [hwloc](https://www.open-mpi.org/projects/hwloc/) | 2.9.2 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | system |
ShowThe Portable Hardware Locality (hwloc) software package provides a portable abstraction (across OS, versions, architectures, ...) of the hierarchical topology of modern architectures, including NUMA memory nodes, sockets, shared caches, cores and simultaneous multithreading. It also gathers various system attributes such as cache and memory information as well as the locality of I/O devices such as network interfaces, InfiniBand HCAs or GPUs. It primarily aims at helping applications with gathering information about modern computing hardware so as to exploit it accordingly and efficiently.
| +| [hypothesis](https://github.com/HypothesisWorks/hypothesis) | 6.90.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowHypothesis is an advanced testing library for Python. It lets you write tests which are parametrized by a source of examples, and then generates simple and comprehensible examples that make your tests fail. This lets you find more bugs in your code with less work.
| +| [igraph](https://igraph.org) | 0.10.12 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
Showigraph is a collection of network analysis tools with the emphasis on efficiency, portability and ease of use. igraph is open source and free. igraph can be programmed in R, Python and C/C++.
| +| [iimpi](https://software.intel.com/parallel-studio-xe) | 2023b | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | toolchain |
ShowIntel C/C++ and Fortran compilers, alongside Intel MPI.
| +| [imkl-FFTW](https://software.intel.com/content/www/us/en/develop/tools/oneapi/components/onemkl.html) | 2023.2.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | numlib |
ShowFFTW interfaces using Intel oneAPI Math Kernel Library
| +| [imkl](https://software.intel.com/content/www/us/en/develop/tools/oneapi/components/onemkl.html) | 2023.2.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | numlib |
ShowIntel oneAPI Math Kernel Library
| +| [impi](https://software.intel.com/content/www/us/en/develop/tools/mpi-library.html) | 2021.10.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | mpi |
ShowIntel MPI Library, compatible with MPICH ABI
| +| [intel-compilers](https://software.intel.com/content/www/us/en/develop/tools/oneapi/hpc-toolkit.html) | 2023.2.1 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | compiler |
ShowIntel C, C++ & Fortran compilers (classic and oneAPI)
| +| [intel](https://docs.easybuild.io/common-toolchains/#common_toolchains_overview_intel) | 2023b | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | toolchain |
ShowCompiler toolchain including Intel compilers, Intel MPI and Intel Math Kernel Library (MKL).
| +| [intltool](https://freedesktop.org/wiki/Software/intltool/) | 0.51.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | devel |
Showintltool is a set of tools to centralize translation of many different file formats using GNU gettext-compatible PO files.
| +| [ipywidgets](https://jupyter.org/) | 8.1.2 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowJupyter Widgets are interactive browser controls for Jupyter notebooks
| +| [jbigkit](https://www.cl.cam.ac.uk/~mgk25/jbigkit/) | 2.1 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | vis |
ShowJBIG-KIT is a software implementation of the JBIG1 data compression standard (ITU-T T.82), which was designed for bi-level image data, such as scanned documents.
| +| [jedi](https://github.com/davidhalter/jedi) | 0.19.1 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowJedi - an awesome autocompletion, static analysis and refactoring library for Python. It is typically used in IDEs/editors plugins. Jedi has a focus on autocompletion and goto functionality. Other features include refactoring, code search and finding references.
| +| [json-c](https://github.com/json-c/json-c) | 0.17 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowJSON-C implements a reference counting object model that allows you to easily construct JSON objects in C, output them as JSON formatted strings and parse JSON formatted strings back into the C representation of JSON objects.
| +| [jupyter-resource-usage](https://github.com/jupyter-server/jupyter-resource-usage) | 1.0.2 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowJupyter Notebook Extension for monitoring your own Resource Usage (memory and/or CPU)
| +| [jupyter-server-proxy](https://github.com/jupyterhub/jupyter-server-proxy) | 4.1.2 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowJupyter Server Proxy lets you run arbitrary external processes (such as RStudio, Shiny Server, Syncthing, PostgreSQL, Code Server, etc) alongside your notebook server and provide authenticated web access to them using a path like /rstudio next to others like /lab. Alongside the python package that provides the main functionality, the JupyterLab extension (@jupyterlab/server-proxy) provides buttons in the JupyterLab launcher window to get to RStudio for example.
| +| [jupyter-server](https://jupyter.org/) | 2.14.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowThe Jupyter Server provides the backend (i.e. the core services, APIs, and REST endpoints) for Jupyter web applications like Jupyter notebook, JupyterLab, and Voila.
| +| [jupyter_packaging](http://jupyter.org/) | 0.12.3 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowTools to help build and install Jupyter Python packages that require a pre-build step that may include JavaScript build steps.
| +| [jupyterlmod](https://github.com/cmd-ntrf/jupyter-lmod) | 5.2.1 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowJupyter interactive notebook server extension that allows users to interact with environment modules before launching kernels. The extension uses Lmod's Python interface to accomplish module-related tasks like loading, unloading, saving collections, etc.
| +| [jxrlib](https://github.com/4creators/jxrlib) | 1.1 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowOpen source implementation of jpegxr
| +| [kim-api](https://openkim.org/) | 2.3.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | chem |
ShowOpen Knowledgebase of Interatomic Models. KIM is an API and OpenKIM is a collection of interatomic models (potentials) for atomistic simulations. This is a library that can be used by simulation programs to get access to the models in the OpenKIM database. This EasyBuild only installs the API, the models can be installed with the package openkim-models, or the user can install them manually by running kim-api-collections-management install user MODELNAME or kim-api-collections-management install user OpenKIM to install them all.
| +| [lcalc](https://gitlab.com/sagemath/lcalc) | 2.0.5 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowLcalc is a package for working with L-functions.
| +| [libGLU](https://gitlab.freedesktop.org/mesa/glu) | 9.0.3 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | vis |
ShowThe OpenGL Utility Library (GLU) is a computer graphics library for OpenGL.
| +| [libaec](https://gitlab.dkrz.de/k202009/libaec) | 1.0.6 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowLibaec provides fast lossless compression of 1 up to 32 bit wide signed or unsigned integers (samples). The library achieves best results for low entropy data as often encountered in space imaging instrument data or numerical model output from weather or climate simulations. While floating point representations are not directly supported, they can also be efficiently coded by grouping exponents and mantissa.
| +| [libarchive](https://www.libarchive.org/) | 3.7.2 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowMulti-format archive and compression library
| +| [libbraiding](https://github.com/miguelmarco/libbraiding) | 1.2 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowThis is a project to expose the functionalitis of the Braiding program as a shared library. The original goal is to include it as a component of SageMath, but it can be used in any other c++ program.
| +| [libcerf](https://jugit.fz-juelich.de/mlz/libcerf) | 2.4 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
Showlibcerf is a self-contained numeric library that provides an efficient and accurate implementation of complex error functions, along with Dawson, Faddeeva, and Voigt functions.
| +| [libde265](https://github.com/strukturag/libde265) | 1.0.15 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
Showlibde265 is an open source implementation of the h.265 video codec
| +| [libdeflate](https://github.com/ebiggers/libdeflate) | 1.19 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | system |
ShowHeavily optimized library for DEFLATE/zlib/gzip compression and decompression.
| +| [libdrm](https://dri.freedesktop.org) | 2.4.117 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowDirect Rendering Manager runtime library.
| +| [libepoxy](https://github.com/anholt/libepoxy) | 1.5.10 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowEpoxy is a library for handling OpenGL function pointer management for you
| +| [libevent](https://libevent.org/) | 2.1.12 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowThe libevent API provides a mechanism to execute a callback function when a specific event occurs on a file descriptor or after a timeout has been reached. Furthermore, libevent also support callbacks due to signals or regular timeouts.
| +| [libfabric](https://ofiwg.github.io/libfabric/) | 1.19.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowLibfabric is a core component of OFI. It is the library that defines and exports the user-space API of OFI, and is typically the only software that applications deal with directly. It works in conjunction with provider libraries, which are often integrated directly into libfabric.
| +| [libffi](https://sourceware.org/libffi/) | 3.4.4 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowThe libffi library provides a portable, high level programming interface to various calling conventions. This allows a programmer to call any function specified by a call interface description at run-time.
| +| [libgd](https://libgd.github.io) | 2.3.3 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowGD is an open source code library for the dynamic creation of images by programmers.
| +| [libgeotiff](https://directory.fsf.org/wiki/Libgeotiff) | 1.7.3 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowLibrary for reading and writing coordinate system information from/to GeoTIFF files
| +| [libgit2](https://libgit2.org/) | 1.7.2 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | devel |
Showlibgit2 is a portable, pure C implementation of the Git core methods provided as a re-entrant linkable library with a solid API, allowing you to write native speed custom Git applications in any language which supports C bindings.
| +| [libglvnd](https://gitlab.freedesktop.org/glvnd/libglvnd) | 1.7.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
Showlibglvnd is a vendor-neutral dispatch layer for arbitrating OpenGL API calls between multiple vendors.
| +| [libheif](https://github.com/strukturag/libheif) | 1.19.5 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
Showlibheif is an HEIF and AVIF file format decoder and encoder
| +| [libhomfly](https://github.com/miguelmarco/libhomfly) | 1.02r6 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowThis is basically a conversion of the program written by Robert J Jenkins Jr into a shared library. It accepts as entry a character string, formatted in the same way as the input files that the original code used (see below). The returned value is the string that the original program would print on screen.
| +| [libiconv](https://www.gnu.org/software/libiconv) | 1.17 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowLibiconv converts from one character encoding to another through Unicode conversion
| +| [libjpeg-turbo](https://sourceforge.net/projects/libjpeg-turbo/) | 3.0.1 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
Showlibjpeg-turbo is a fork of the original IJG libjpeg which uses SIMD to accelerate baseline JPEG compression and decompression. libjpeg is a library that implements JPEG image encoding, decoding and transcoding.
| +| [libogg](https://xiph.org/ogg/) | 1.3.5 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowOgg is a multimedia container format, and the native file and stream format for the Xiph.org multimedia codecs.
| +| [libopus](https://www.opus-codec.org/) | 1.5.2 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowOpus is a totally open, royalty-free, highly versatile audio codec. Opus is unmatched for interactive speech and music transmission over the Internet, but is also intended for storage and streaming applications. It is standardized by the Internet Engineering Task Force (IETF) as RFC 6716 which incorporated technology from Skype’s SILK codec and Xiph.Org’s CELT codec.
| +| [libpciaccess](https://cgit.freedesktop.org/xorg/lib/libpciaccess/) | 0.17 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | system |
ShowGeneric PCI access library.
| +| [libpng](http://www.libpng.org/pub/png/libpng.html) | 1.6.40 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
Showlibpng is the official PNG reference library
| +| [libreadline](https://tiswww.case.edu/php/chet/readline/rltop.html) | 8.2 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowThe GNU Readline library provides a set of functions for use by applications that allow users to edit command lines as they are typed in. Both Emacs and vi editing modes are available. The Readline library includes additional functions to maintain a list of previously-entered command lines, to recall and perhaps reedit those lines, and perform csh-like history expansion on previous commands.
| +| [libsndfile](http://www.mega-nerd.com/libsndfile) | 1.2.2 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowLibsndfile is a C library for reading and writing files containing sampled sound (such as MS Windows WAV and the Apple/SGI AIFF format) through one standard library interface.
| +| [libsodium](https://doc.libsodium.org/) | 1.0.19 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowSodium is a modern, easy-to-use software library for encryption, decryption, signatures, password hashing and more.
| +| [libtirpc](https://sourceforge.net/projects/libtirpc/) | 1.3.4 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowLibtirpc is a port of Suns Transport-Independent RPC library to Linux.
| +| [libtool](https://www.gnu.org/software/libtool) | 2.4.7 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowGNU libtool is a generic library support script. Libtool hides the complexity of using shared libraries behind a consistent, portable interface.
| +| [libunwind](https://www.nongnu.org/libunwind/) | 1.6.2 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowThe primary goal of libunwind is to define a portable and efficient C programming interface (API) to determine the call-chain of a program. The API additionally provides the means to manipulate the preserved (callee-saved) state of each call-frame and to resume execution at any point in the call-chain (non-local goto). The API supports both local (same-process) and remote (across-process) operation. As such, the API is useful in a number of applications
| +| [libvorbis](https://xiph.org/vorbis/) | 1.3.7 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowOgg Vorbis is a fully open, non-proprietary, patent-and-royalty-free, general-purpose compressed audio format
| +| [libvori](https://brehm-research.de/libvori.php) | 220621 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowC++ library implementing the Voronoi integration as well as the compressed bqb file format. The present version of libvori is a very early development version, which is hard-coded to work with the CP2k program package.
| +| [libwebp](https://developers.google.com/speed/webp/) | 1.3.2 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowWebP is a modern image format that provides superior lossless and lossy compression for images on the web. Using WebP, webmasters and web developers can create smaller, richer images that make the web faster.
| +| [libxc](https://libxc.gitlab.io) | 6.2.2 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | chem |
ShowLibxc is a library of exchange-correlation functionals for density-functional theory. The aim is to provide a portable, well tested and reliable set of exchange and correlation functionals.
| +| [libxml2](https://gitlab.gnome.org/GNOME/libxml2/-/wikis) | 2.11.5 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowLibxml2 is the XML C parser and toolchain developed for the Gnome project (but usable outside of the Gnome platform).
| +| [libxslt](https://gitlab.gnome.org/GNOME/libxslt/-/wikis) | 1.1.38 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowLibxslt is the XSLT C library developed for the GNOME project (but usable outside of the Gnome platform).
| +| [libxsmm](https://github.com/libxsmm/libxsmm) | 1.17 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowLIBXSMM is a library for small dense and small sparse matrix-matrix multiplications targeting Intel Architecture (x86).
| +| [libyaml](https://pyyaml.org/wiki/LibYAML) | 0.2.5 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowLibYAML is a YAML parser and emitter written in C.
| +| [lit](https://llvm.org/docs/CommandGuide/lit.html) | 18.1.7 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
Showlit is a portable tool for executing LLVM and Clang style test suites, summarizing their results, and providing indication of failures.
| +| [lrcalc](https://sites.math.rutgers.edu/~asbuch/lrcalc/) | 2.1 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowThe Littlewood-Richardson Calculator is a program designed to compute Littlewood-Richardson coefficients.
| +| [lrslib](http://cgm.cs.mcgill.ca/~avis/C/lrs.html) | 7.2 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
Showlrslib is a self-contained ANSI C implementation of the reverse search algorithm for vertex enumeration/convex hull problems
| +| [lxml](https://lxml.de/) | 4.9.3 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowThe lxml XML toolkit is a Pythonic binding for the C libraries libxml2 and libxslt.
| +| [lz4](https://lz4.github.io/lz4/) | 1.9.4 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowLZ4 is lossless compression algorithm, providing compression speed at 400 MB/s per core. It features an extremely fast decoder, with speed in multiple GB/s per core.
| +| [m4ri](https://github.com/malb/m4ri) | 20200125 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowM4RI is a library for fast arithmetic with dense matrices over F2.
| +| [m4rie](https://github.com/malb/m4rie) | 20200125 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowM4RIE is a library for fast arithmetic with dense matrices.
| +| [make](https://www.gnu.org/software/make/make.html) | 4.4.1 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | devel |
ShowGNU version of make utility
| +| [makeinfo](https://www.gnu.org/software/texinfo/) | 7.1 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | devel |
Showmakeinfo is part of the Texinfo project, the official documentation format of the GNU project.
| +| [matplotlib](https://matplotlib.org) | 3.8.2 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | vis |
Showmatplotlib is a python 2D plotting library which produces publication quality figures in a variety of hardcopy formats and interactive environments across platforms. matplotlib can be used in python scripts, the python and ipython shell, web application servers, and six graphical user interface toolkits.
| +| [maturin](https://github.com/pyo3/maturin) | 1.3.1
1.5.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowThis project is meant as a zero configuration replacement for setuptools-rust and milksnake. It supports building wheels for python 3.5+ on windows, linux, mac and freebsd, can upload them to pypi and has basic pypy and graalpy support.
| +| [mcqd](https://gitlab.com/janezkonc/mcqd) | 1.0.0 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowMaxCliqueDyn is a fast exact algorithm for finding a maximum clique in an undirected graph.
| +| [meson-python](https://github.com/mesonbuild/meson-python) | 0.15.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowPython build backend (PEP 517) for Meson projects
| +| [mpi4py](https://github.com/mpi4py/mpi4py) | 3.1.5 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowMPI for Python (mpi4py) provides bindings of the Message Passing Interface (MPI) standard for the Python programming language, allowing any Python program to exploit multiple processors.
| +| [nanobind](https://github.com/wjakob/nanobind) | 2.5.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | devel |
Shownanobind is a small binding library for C++11 / C++17 / C++20 that heavily builds on capabilities introduced in recent versions of C++.
| +| [nauty](https://pallini.di.uniroma1.it/) | 2.8.8 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
Shownauty and Traces are programs for computing automorphism groups of graphs and digraphs. They can also produce a canonical label.
| +| [nbclassic](https://jupyter.org/) | 1.0.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowNbClassic provides a backwards compatible Jupyter Notebook interface that you can install side-by-side with the latest versions: That way, you can fearlessly upgrade without worrying about your classic extensions and customizations breaking.
| +| [ncurses](https://www.gnu.org/software/ncurses/) | 6.4 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | devel |
ShowThe Ncurses (new curses) library is a free software emulation of curses in System V Release 4.0, and more. It uses Terminfo format, supports pads and color and multiple highlights and forms characters and function-key mapping, and has all the other SYSV-curses enhancements over BSD Curses.
| +| [netCDF](https://www.unidata.ucar.edu/software/netcdf/) | 4.9.2 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | data |
ShowNetCDF (network Common Data Form) is a set of software libraries and machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data.
| +| [netcdf4-python](https://unidata.github.io/netcdf4-python/) | 1.6.5 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | data |
ShowPython/numpy interface to netCDF.
| +| [nettle](https://www.lysator.liu.se/~nisse/nettle/) | 3.9.1 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowNettle is a cryptographic library that is designed to fit easily in more or less any context: In crypto toolkits for object-oriented languages (C++, Python, Pike, ...), in applications like LSH or GNUPG, or even in kernel space.
| +| [networkx](https://pypi.python.org/pypi/networkx) | 3.2.1 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowNetworkX is a Python package for the creation, manipulation, and study of the structure, dynamics, and functions of complex networks.
| +| [nlohmann_json](https://github.com/nlohmann/json) | 3.11.3 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowJSON for Modern C++
| +| [nodejs](https://nodejs.org) | 20.9.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lang |
ShowNode.js is a platform built on Chrome's JavaScript runtime for easily building fast, scalable network applications. Node.js uses an event-driven, non-blocking I/O model that makes it lightweight and efficient, perfect for data-intensive real-time applications that run across distributed devices.
| +| [nose3](https://nose.readthedocs.io/) | 1.3.8 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | devel |
ShowNose extends unittest to make testing easier.
| +| [numactl](https://github.com/numactl/numactl) | 2.0.16 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowThe numactl program allows you to run your application program on specific cpu's and memory nodes. It does this by supplying a NUMA memory policy to the operating system before running your program. The libnuma library provides convenient ways for you to add NUMA memory policies into your own program.
| +| [numba](https://numba.pydata.org/) | 0.60.0 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | lang |
ShowNumba is an Open Source NumPy-aware optimizing compiler for Python sponsored by Continuum Analytics, Inc. It uses the remarkable LLVM compiler infrastructure to compile Python syntax to machine code.
| +| [ocamlbuild](https://github.com/ocaml/ocamlbuild) | 0.14.3 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | devel |
ShowOCamlbuild is a generic build tool, that has built-in rules for building OCaml library and programs.
| +| [occt](https://www.opencascade.com/) | 7.8.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | cae |
ShowOpen CASCADE Technology (OCCT) is an object-oriented C++ class library designed for rapid production of sophisticated domain-specific CAD/CAM/CAE applications.
| +| [optree](https://optree.readthedocs.io/en/latest/) | 0.13.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowOptimized PyTree Utilities
| +| [paramiko](https://paramiko.org) | 3.5.1 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowParamiko is a pure-Python (3.6+) implementation of the SSHv2 protocol, providing both client and server functionality. It provides the foundation for the high-level SSH library Fabric, which is what we recommend you use for common client use-cases such as running remote shell commands or transferring files.
| +| [patchelf](https://github.com/NixOS/patchelf) | 0.18.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowPatchELF is a small utility to modify the dynamic linker and RPATH of ELF executables.
| +| [petsc4py](https://gitlab.com/petsc/petsc) | 3.22.5 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
Showpetsc4py are Python bindings for PETSc, the Portable, Extensible Toolchain for Scientific Computation.
| +| [pigz](https://zlib.net/pigz/) | 2.8 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
Showpigz, which stands for parallel implementation of gzip, is a fully functional replacement for gzip that exploits multiple processors and multiple cores to the hilt when compressing data. pigz was written by Mark Adler, and uses the zlib and pthread libraries.
| +| [pixman](http://www.pixman.org/) | 0.42.2 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | vis |
ShowPixman is a low-level software library for pixel manipulation, providing features such as image compositing and trapezoid rasterization. Important users of pixman are the cairo graphics library and the X server.
| +| [pkgconf](https://github.com/pkgconf/pkgconf) | 1.8.0
2.0.3 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | devel |
Showpkgconf is a program which helps to configure compiler and linker flags for development libraries. It is similar to pkg-config from freedesktop.org.
| +| [pkgconfig](https://github.com/matze/pkgconfig) | 1.5.5 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | devel |
Showpkgconfig is a Python module to interface with the pkg-config command line tool
| +| [planarity](https://github.com/graph-algorithms/edge-addition-planarity-suite) | 3.0.2.0 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowA library for implementing graph algorithms
| +| [poetry](https://python-poetry.org) | 1.6.1 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowPython packaging and dependency management made easy. Poetry helps you declare, manage and install dependencies of Python projects, ensuring you have the right stack everywhere.
| +| [poppler](https://poppler.freedesktop.org) | 24.04.0 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowPoppler is a PDF rendering library
| +| [primecount](https://github.com/kimwalisch/primecount) | 7.14 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
Showprimecount is a command-line program and C/C++ library that counts the number of primes ≤ x (maximum 1031) using highly optimized implementations of the combinatorial prime counting algorithms.
| +| [primecountpy](https://pypi.org/project/primecountpy) | 0.1.0 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowThis is a Cython interface to the C++ library primecount.
| +| [protobuf-python](https://github.com/google/protobuf/) | 4.25.3 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | devel |
ShowPython Protocol Buffers runtime library.
| +| [protobuf](https://github.com/protocolbuffers/protobuf) | 25.3 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | devel |
ShowProtocol Buffers (a.k.a., protobuf) are Google's language-neutral, platform-neutral, extensible mechanism for serializing structured data.
| +| [psutil](https://github.com/giampaolo/psutil) | 6.1.0 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowA cross-platform process and system utilities module for Python
| +| [psycopg](https://psycopg.org/) | 3.1.18 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowPsycopg is the most popular PostgreSQL adapter for the Python programming language.
| +| [pugixml](https://pugixml.org/) | 1.14 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | data |
Showpugixml is a light-weight C++ XML processing library
| +| [pybedtools](https://daler.github.io/pybedtools) | 0.10.0 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | bio |
Showpybedtools wraps and extends BEDTools and offers feature-level manipulations from within Python.
| +| [pybind11](https://pybind11.readthedocs.io) | 2.11.1 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
Showpybind11 is a lightweight header-only library that exposes C++ types in Python and vice versa, mainly to create Python bindings of existing C++ code.
| +| [pyfaidx](https://pypi.python.org/pypi/pyfaidx) | 0.8.1.1 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | bio |
Showpyfaidx: efficient pythonic random access to fasta subsequences
| +| [pytest-flakefinder](https://github.com/dropbox/pytest-flakefinder) | 1.1.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowRuns tests multiple times to expose flakiness.
| +| [pytest-rerunfailures](https://github.com/pytest-dev/pytest-rerunfailures) | 14.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
Showpytest plugin to re-run tests to eliminate flaky failures.
| +| [pytest-shard](https://github.com/AdamGleave/pytest-shard) | 0.1.2 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
Showpytest plugin to support parallelism across multiple machines. Shards tests based on a hash of their test name enabling easy parallelism across machines, suitable for a wide variety of continuous integration services. Tests are split at the finest level of granularity, individual test cases, enabling parallelism even if all of your tests are in a single file (or even single parameterized test method).
| +| [python-isal](https://github.com/pycompression/python-isal) | 1.6.1 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowFaster zlib and gzip compatible compression and decompression by providing python bindings for the isa-l library.
| +| [rankwidth](https://sourceforge.net/projects/rankwidth/) | 0.9 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
Showrw calculates rank-width and rank-decompositions. It is based on ideas from "Computing rank-width exactly" by Sang-il Oum, "Sopra una formula numerica" by Ernesto Pascal, "Generation of a Vector from the Lexicographical Index" by B.P. Buckles and M. Lybanon and "Fast additions on masked integers" by Michael D. Adams and David S. Wise.
| +| [re2c](https://re2c.org) | 3.1 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
Showre2c is a free and open-source lexer generator for C and C++. Its main goal is generating fast lexers: at least as fast as their reasonably optimized hand-coded counterparts. Instead of using traditional table-driven approach, re2c encodes the generated finite state automata directly in the form of conditional jumps and comparisons.
| +| [robin-map](https://github.com/Tessil/robin-map) | 1.3.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | devel |
Showrobin-map is a C++ implementation of a fast and memory efficient hash table. It is based on Robin Hood hashing with backward shift deletion.
| +| [scikit-bio](http://scikit-bio.org) | 0.6.2 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | bio |
Showscikit-bio is an open-source, BSD-licensed Python 3 package providing data structures, algorithms and educational resources for bioinformatics.
| +| [scikit-build-core](https://scikit-build.readthedocs.io/en/latest/) | 0.10.7
0.9.3 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowScikit-build-core is a complete ground-up rewrite of scikit-build on top of modern packaging APIs. It provides a bridge between CMake and the Python build system, allowing you to make Python modules with CMake.
| +| [scikit-build](https://scikit-build.readthedocs.io/en/latest) | 0.17.6 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowScikit-Build, or skbuild, is an improved build system generator for CPython C/C++/Fortran/Cython extensions.
| +| [scikit-learn](https://scikit-learn.org/stable/index.html) | 1.4.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | data |
ShowScikit-learn integrates machine learning algorithms in the tightly-knit scientific Python world, building upon numpy, scipy, and matplotlib. As a machine-learning module, it provides versatile tools for data mining and analysis in any field of science and engineering. It strives to be simple and efficient, accessible to everybody, and reusable in various contexts.
| +| [setuptools-rust](https://github.com/PyO3/setuptools-rust) | 1.8.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
Showsetuptools-rust is a plugin for setuptools to build Rust Python extensions implemented with PyO3 or rust-cpython.
| +| [setuptools](https://pypi.org/project/setuptools) | 80.9.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | devel |
ShowEasily download, build, install, upgrade, and uninstall Python packages
| +| [sirocco](https://github.com/miguelmarco/SIROCCO2/) | 2.1.0 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowC++ library that allows to compute piecewise linear approximations of the path followed by the root of a complex polynomial
| +| [slepc4py](https://bitbucket.org/slepc/slepc4py) | 3.22.2 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowPython bindings for SLEPc, the Scalable Library for Eigenvalue Problem Computations.
| +| [snakemake](https://snakemake.readthedocs.io) | 8.28.0 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowThe Snakemake workflow management system is a tool to create reproducible and scalable data analyses.
| +| [snappy](https://github.com/google/snappy) | 1.1.10 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowSnappy is a compression/decompression library. It does not aim for maximum compression, or compatibility with any other compression library; instead, it aims for very high speeds and reasonable compression.
| +| [spdlog](https://github.com/gabime/spdlog) | 1.12.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowVery fast, header-only/compiled, C++ logging library.
| +| [statsmodels](https://www.statsmodels.org/) | 0.14.1 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowStatsmodels is a Python module that allows users to explore data, estimate statistical models, and perform statistical tests.
| +| [sympy](https://sympy.org/) | 1.12 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowSymPy is a Python library for symbolic mathematics. It aims to become a full-featured computer algebra system (CAS) while keeping the code as simple as possible in order to be comprehensible and easily extensible. SymPy is written entirely in Python and does not require any external libraries.
| +| [tbb](https://github.com/oneapi-src/oneTBB) | 2021.13.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowIntel(R) Threading Building Blocks (Intel(R) TBB) lets you easily write parallel C++ programs that take full advantage of multicore performance, that are portable, composable and have future-proof scalability.
| +| [tdlib](https://github.com/freetdi/tdlib/) | 0.9.3 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
Showtreedec provides tree decomposition algorithms.
| +| [texlive](https://tug.org) | 20230313 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | devel |
ShowTeX is a typesetting language. Instead of visually formatting your text, you enter your manuscript text intertwined with TeX commands in a plain text file. You then run TeX to produce formatted output, such as a PDF file. Thus, in contrast to standard word processors, your document is a separate file that does not pretend to be a representation of the final typeset output, and so can be easily edited and manipulated.
| +| [tlparse](https://github.com/ezyang/tlparse) | 0.3.5 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowParse structured PT2 (PyTorch 2) logs
| +| [tmpi](https://github.com/Azrael3000/tmpi/) | 1.0.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | debugger |
ShowRun multiple MPI processes as a grid in a new tmux window and multiplex keyboard input to all of them. Useful for debugging MPI application with GDB.
| +| [tornado](https://github.com/tornadoweb/tornado) | 6.4 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowTornado is a Python web framework and asynchronous networking library.
| +| [tqdm](https://github.com/tqdm/tqdm) | 4.66.2 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowA fast, extensible progress bar for Python and CLI
| +| [typing-extensions](https://github.com/python/typing_extensions) | 4.10.0 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | devel |
ShowTyping Extensions - Backported and Experimental Type Hints for Python
| +| [umap-learn](https://umap-learn.readthedocs.io/en/latest/) | 0.5.7 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowUniform Manifold Approximation and Projection (UMAP) is a dimension reduction technique that can be used for visualisation similarly to t-SNE, but also for general non-linear dimension reduction.
| +| [unittest-xml-reporting](http://github.com/xmlrunner/unittest-xml-reporting) | 3.1.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowA unittest test runner that can save test results to XML files in xUnit format. The files can be consumed by a wide range of tools, such as build systems, IDEs and continuous integration servers.
| +| [utf8proc](https://github.com/JuliaStrings/utf8proc) | 2.9.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
Showutf8proc is a small, clean C library that provides Unicode normalization, case-folding, and other operations for data in the UTF-8 encoding.
| +| [util-linux](https://www.kernel.org/pub/linux/utils/util-linux) | 2.39 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowSet of Linux utilities
| +| [virtualenv](https://github.com/pypa/virtualenv) | 20.24.6 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowA tool for creating isolated virtual python environments.
| +| [wrapt](https://pypi.org/project/wrapt/) | 1.16.0 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowThe aim of the wrapt module is to provide a transparent object proxy for Python, which can be used as the basis for the construction of function wrappers and decorator functions.
| +| [x264](https://www.videolan.org/developers/x264.html) | 20231019 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | vis |
Showx264 is a free software library and application for encoding video streams into the H.264/MPEG-4 AVC compression format, and is released under the terms of the GNU GPL.
| +| [x265](https://x265.org/) | 3.5 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | vis |
Showx265 is a free software library and application for encoding video streams into the H.265 AVC compression format, and is released under the terms of the GNU GPL.
| +| [xorg-macros](https://gitlab.freedesktop.org/xorg/util/macros) | 1.20.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | devel |
ShowX.org macros utilities.
| +| [xprop](https://www.x.org/wiki/) | 1.2.7 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | vis |
ShowThe xprop utility is for displaying window and font properties in an X server. One window or font is selected using the command line arguments or possibly in the case of a window, by clicking on the desired window. A list of properties is then given, possibly with formatting information.
| +| [xxd](https://www.vim.org) | 9.1.0307 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
Showxxd is part of the VIM package and this will only install xxd, not vim! xxd converts to/from hexdumps of binary files.
| +| [zlib](https://www.zlib.net/) | 1.2.13 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
Showzlib is designed to be a free, general-purpose, legally unencumbered -- that is, not covered by any patents -- lossless data-compression library for use on virtually any computer hardware and operating system.
| +| [zstd](https://facebook.github.io/zstd) | 1.5.5 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowZstandard is a real-time compression algorithm, providing high compression ratios. It offers a very wide range of compression/speed trade-off, while being backed by a very fast decoder. It also offers a special mode for small data, called dictionary compression, and can create dictionaries from any sample set.
| \ No newline at end of file diff --git a/docs/software/swsets/2024a.md b/docs/software/swsets/2024a.md new file mode 100644 index 000000000..344039733 --- /dev/null +++ b/docs/software/swsets/2024a.md @@ -0,0 +1,349 @@ +| Software | Version | Architectures | Clusters | Category | Description | +|:------------------------------------------------------------------------------------------------------|:------------------|:-------------------------------------------------------|:-----------|:-----------|:---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------| +| [ACTC](https://sourceforge.net/projects/actc) | 1.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowACTC converts independent triangles into triangle strips or fans.
| +| [ATK](https://developer.gnome.org/atk/) | 2.38.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | vis |
ShowATK provides the set of accessibility interfaces that are implemented by other toolkits and applications. Using the ATK interfaces, accessibility tools have full access to view and control running applications.
| +| [Abseil](https://abseil.io/) | 20240722.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowAbseil is an open-source collection of C++ library code designed to augment the C++ standard library. The Abseil library code is collected from Google's own C++ code base, has been extensively tested and used in production, and is the same code we depend on in our daily coding lives.
| +| [Apptainer](https://github.com/apptainer/apptainer) | 1.4.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
ShowApptainer is an open source container platform designed to be simple, fast, and secure. Many container platforms are available, but Apptainer is designed for ease-of-use on shared systems and in high performance computing (HPC) environments
| +| [Armadillo](https://arma.sourceforge.net/) | 14.0.3 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | numlib |
ShowArmadillo is an open-source C++ linear algebra library (matrix maths) aiming towards a good balance between speed and ease of use. Integer, floating point and complex numbers are supported, as well as a subset of trigonometric and statistics functions.
| +| [Arrow](https://arrow.apache.org) | 17.0.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | data |
ShowApache Arrow (incl. PyArrow Python bindings), a cross-language development platform for in-memory data.
| +| [Autoconf](https://www.gnu.org/software/autoconf/) | 2.71 | NVIDIA Tesla | iris | devel |
ShowAutoconf is an extensible package of M4 macros that produce shell scripts to automatically configure software source code packages. These scripts can adapt the packages to many kinds of UNIX-like systems without manual user intervention. Autoconf creates a configuration script for a package from a template file that lists the operating system features that the package can use, in the form of M4 macro calls.
| +| [Autoconf](https://www.gnu.org/software/autoconf/) | 2.72 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | devel |
ShowAutoconf is an extensible package of M4 macros that produce shell scripts to automatically configure software source code packages. These scripts can adapt the packages to many kinds of UNIX-like systems without manual user intervention. Autoconf creates a configuration script for a package from a template file that lists the operating system features that the package can use, in the form of M4 macro calls.
| +| [Automake](https://www.gnu.org/software/automake/automake.html) | 1.16.5 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | devel |
ShowAutomake: GNU Standards-compliant Makefile generator
| +| [Autotools](https://autotools.io) | 20220317 | NVIDIA Tesla | iris | devel |
ShowThis bundle collect the standard GNU build tools: Autoconf, Automake and libtool
| +| [Autotools](https://autotools.io) | 20231222 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | devel |
ShowThis bundle collect the standard GNU build tools: Autoconf, Automake and libtool
| +| [BLIS](https://github.com/flame/blis/) | 1.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | numlib |
ShowBLIS is a portable software framework for instantiating high-performance BLAS-like dense linear algebra libraries.
| +| [Bison](https://www.gnu.org/software/bison) | 3.8.2 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | lang |
ShowBison is a general-purpose parser generator that converts an annotated context-free grammar into a deterministic LR or generalized LR (GLR) parser employing LALR(1) parser tables.
| +| [Boost](https://www.boost.org/) | 1.85.0 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | devel |
ShowBoost provides free peer-reviewed portable C++ source libraries.
| +| [Brotli](https://github.com/google/brotli) | 1.1.0 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | lib |
ShowBrotli is a generic-purpose lossless compression algorithm that compresses data using a combination of a modern variant of the LZ77 algorithm, Huffman coding and 2nd order context modeling, with a compression ratio comparable to the best currently available general-purpose compression methods. It is similar in speed with deflate but offers more dense compression. The specification of the Brotli Compressed Data Format is defined in RFC 7932.
| +| [Brunsli](https://github.com/google/brunsli/) | 0.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowBrunsli is a lossless JPEG repacking library.
| +| [CFITSIO](https://heasarc.gsfc.nasa.gov/fitsio/) | 4.4.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowCFITSIO is a library of C and Fortran subroutines for reading and writing data files in FITS (Flexible Image Transport System) data format.
| +| [CGAL](https://www.cgal.org/) | 5.6.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | numlib |
ShowThe goal of the CGAL Open Source Project is to provide easy access to efficient and reliable geometric algorithms in the form of a C++ library.
| +| [CMake](https://www.cmake.org) | 3.29.3
3.31.8 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | devel |
ShowCMake, the cross-platform, open-source build system. CMake is a family of tools designed to build, test and package software.
| +| [CUDA](https://developer.nvidia.com/cuda-toolkit) | 12.6.0 | NVIDIA Tesla | iris | system |
ShowCUDA (formerly Compute Unified Device Architecture) is a parallel computing platform and programming model created by NVIDIA and implemented by the graphics processing units (GPUs) that they produce. CUDA gives developers access to the virtual instruction set and memory of the parallel computational elements in CUDA GPUs.
| +| [Catch2](https://github.com/catchorg/Catch2) | 2.13.10 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | lib |
ShowA modern, C++-native, header-only, test framework for unit-tests, TDD and BDD - using C++11, C++14, C++17 and later
| +| [Cbc](https://github.com/coin-or/Cbc) | 2.10.12 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | math |
ShowCbc (Coin-or branch and cut) is an open-source mixed integer linear programming solver written in C++. It can be used as a callable library or using a stand-alone executable.
| +| [Cgl](https://github.com/coin-or/Cgl) | 0.60.8 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | math |
ShowThe COIN-OR Cut Generation Library (Cgl) is a collection of cut generators that can be used with other COIN-OR packages that make use of cuts, such as, among others, the linear solver Clp or the mixed integer linear programming solvers Cbc or BCP. Cgl uses the abstract class OsiSolverInterface (see Osi) to use or communicate with a solver. It does not directly call a solver.
| +| [Clp](https://github.com/coin-or/Clp) | 1.17.10 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | math |
ShowClp (Coin-or linear programming) is an open-source linear programming solver. It is primarily meant to be used as a callable library, but a basic, stand-alone executable version is also available.
| +| [CoinUtils](https://github.com/coin-or/CoinUtils) | 2.11.12 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | math |
ShowCoinUtils (Coin-OR Utilities) is an open-source collection of classes and functions that are generally useful to more than one COIN-OR project.
| +| [CubeGUI](https://www.scalasca.org/software/cube-4.x/download.html) | 4.8.2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | perf |
ShowCube, which is used as performance report explorer for Scalasca and Score-P, is a generic tool for displaying a multi-dimensional performance space consisting of the dimensions (i) performance metric, (ii) call path, and (iii) system resource. Each dimension can be represented as a tree, where non-leaf nodes of the tree can be collapsed or expanded to achieve the desired level of granularity. This module provides the Cube graphical report explorer.
| +| [CubeLib](https://www.scalasca.org/software/cube-4.x/download.html) | 4.8.2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | perf |
ShowCube, which is used as performance report explorer for Scalasca and Score-P, is a generic tool for displaying a multi-dimensional performance space consisting of the dimensions (i) performance metric, (ii) call path, and (iii) system resource. Each dimension can be represented as a tree, where non-leaf nodes of the tree can be collapsed or expanded to achieve the desired level of granularity. This module provides the Cube general purpose C++ library component and command-line tools.
| +| [CubeWriter](https://www.scalasca.org/software/cube-4.x/download.html) | 4.8.2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | perf |
ShowCube, which is used as performance report explorer for Scalasca and Score-P, is a generic tool for displaying a multi-dimensional performance space consisting of the dimensions (i) performance metric, (ii) call path, and (iii) system resource. Each dimension can be represented as a tree, where non-leaf nodes of the tree can be collapsed or expanded to achieve the desired level of granularity. This module provides the Cube high-performance C writer library component.
| +| [Cython](https://cython.org/) | 3.0.10 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | lang |
ShowCython is an optimising static compiler for both the Python programming language and the extended Cython programming language (based on Pyrex).
| +| [DBus](https://dbus.freedesktop.org/) | 1.15.8 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | devel |
ShowD-Bus is a message bus system, a simple way for applications to talk to one another. In addition to interprocess communication, D-Bus helps coordinate process lifecycle; it makes it simple and reliable to code a "single instance" application or daemon, and to launch applications and daemons on demand when their services are needed.
| +| [Doxygen](https://www.doxygen.org) | 1.11.0 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | devel |
ShowDoxygen is a documentation system for C++, C, Java, Objective-C, Python, IDL (Corba and Microsoft flavors), Fortran, VHDL, PHP, C#, and to some extent D.
| +| [ELPA](https://elpa.mpcdf.mpg.de/) | 2024.05.001 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | math |
ShowEigenvalue SoLvers for Petaflop-Applications.
| +| [Eigen](https://eigen.tuxfamily.org) | 3.4.0 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | math |
ShowEigen is a C++ template library for linear algebra: matrices, vectors, numerical solvers, and related algorithms.
| +| [FFTW.MPI](https://www.fftw.org) | 3.3.10 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | numlib |
ShowFFTW is a C subroutine library for computing the discrete Fourier transform (DFT) in one or more dimensions, of arbitrary input size, and of both real and complex data.
| +| [FFTW](https://www.fftw.org) | 3.3.10 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | numlib |
ShowFFTW is a C subroutine library for computing the discrete Fourier transform (DFT) in one or more dimensions, of arbitrary input size, and of both real and complex data.
| +| [FFmpeg](https://www.ffmpeg.org/) | 7.0.2 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | vis |
ShowA complete, cross-platform solution to record, convert and stream audio and video.
| +| [FLAC](https://xiph.org/flac/) | 1.4.3 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowFLAC stands for Free Lossless Audio Codec, an audio format similar to MP3, but lossless, meaning that audio is compressed in FLAC without any loss in quality.
| +| [FLTK](https://www.fltk.org) | 1.4.3 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | vis |
ShowFLTK is a cross-platform C++ GUI toolkit for UNIX/Linux (X11), Microsoft Windows, and MacOS X. FLTK provides modern GUI functionality without the bloat and supports 3D graphics via OpenGL and its built-in GLUT emulation.
| +| [FlexiBLAS](https://gitlab.mpi-magdeburg.mpg.de/software/flexiblas-release) | 3.4.4 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowFlexiBLAS is a wrapper library that enables the exchange of the BLAS and LAPACK implementation used by a program without recompiling or relinking it.
| +| [FreeImage](http://freeimage.sourceforge.net) | 3.18.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | vis |
ShowFreeImage is an Open Source library project for developers who would like to support popular graphics image formats like PNG, BMP, JPEG, TIFF and others as needed by today's multimedia applications. FreeImage is easy to use, fast, multithreading safe.
| +| [FriBidi](https://github.com/fribidi/fribidi) | 1.0.15 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | lang |
ShowThe Free Implementation of the Unicode Bidirectional Algorithm.
| +| [GCC](https://gcc.gnu.org/) | 13.3.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | compiler |
ShowThe GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,...).
| +| [GCCcore](https://gcc.gnu.org/) | 13.2.0 | NVIDIA Tesla | iris | compiler |
ShowThe GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,...).
| +| [GCCcore](https://gcc.gnu.org/) | 13.3.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | compiler |
ShowThe GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,...).
| +| [GDAL](https://www.gdal.org) | 3.10.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | data |
ShowGDAL is a translator library for raster geospatial data formats that is released under an X/MIT style Open Source license by the Open Source Geospatial Foundation. As a library, it presents a single abstract data model to the calling application for all supported formats. It also comes with a variety of useful commandline utilities for data translation and processing.
| +| [GDB](https://www.gnu.org/software/gdb/gdb.html) | 14.2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | debugger |
ShowThe GNU Project Debugger
| +| [GDRCopy](https://github.com/NVIDIA/gdrcopy) | 2.4.1 | NVIDIA Tesla | iris | lib |
ShowA low-latency GPU memory copy library based on NVIDIA GPUDirect RDMA technology.
| +| [GEOS](https://trac.osgeo.org/geos) | 3.12.2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | math |
ShowGEOS (Geometry Engine - Open Source) is a C++ port of the Java Topology Suite (JTS)
| +| [GLPK](https://www.gnu.org/software/glpk/) | 5.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
ShowThe GLPK (GNU Linear Programming Kit) package is intended for solving large-scale linear programming (LP), mixed integer programming (MIP), and other related problems. It is a set of routines written in ANSI C and organized in the form of a callable library.
| +| [GLib](https://www.gtk.org/) | 2.80.4 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | vis |
ShowGLib is one of the base libraries of the GTK+ project
| +| [GMP](https://gmplib.org/) | 6.3.0 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | math |
ShowGMP is a free library for arbitrary precision arithmetic, operating on signed integers, rational numbers, and floating point numbers.
| +| [GObject-Introspection](https://gi.readthedocs.io/en/latest/) | 1.80.1 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | devel |
ShowGObject introspection is a middleware layer between C libraries (using GObject) and language bindings. The C library can be scanned at compile time and generate a metadata file, in addition to the actual native C library. Then at runtime, language bindings can read this metadata and automatically provide bindings to call into the C library.
| +| [GSL](https://www.gnu.org/software/gsl/) | 2.8 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | numlib |
ShowThe GNU Scientific Library (GSL) is a numerical library for C and C++ programmers. The library provides a wide range of mathematical routines such as random number generators, special functions and least-squares fitting.
| +| [GST-plugins-base](https://gstreamer.freedesktop.org/) | 1.24.8 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | vis |
ShowGStreamer is a library for constructing graphs of media-handling components. The applications it supports range from simple Ogg/Vorbis playback, audio/video streaming to complex audio (mixing) and video (non-linear editing) processing.
| +| [GStreamer](https://gstreamer.freedesktop.org/) | 1.24.8 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | vis |
ShowGStreamer is a library for constructing graphs of media-handling components. The applications it supports range from simple Ogg/Vorbis playback, audio/video streaming to complex audio (mixing) and video (non-linear editing) processing.
| +| [GTK3](https://developer.gnome.org/gtk3/stable/) | 3.24.42 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | vis |
ShowGTK+ is the primary library used to construct user interfaces in GNOME. It provides all the user interface controls, or widgets, used in a common graphical application. Its object-oriented API allows you to construct user interfaces without dealing with the low-level details of drawing and device interaction.
| +| [Gdk-Pixbuf](https://docs.gtk.org/gdk-pixbuf/) | 2.42.11 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | vis |
ShowThe Gdk Pixbuf is a toolkit for image loading and pixel buffer manipulation. It is used by GTK+ 2 and GTK+ 3 to load and manipulate images. In the past it was distributed as part of GTK+ 2 but it was split off into a separate package in preparation for the change to GTK+ 3.
| +| [Ghostscript](https://ghostscript.com) | 10.03.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
ShowGhostscript is a versatile processor for PostScript data with the ability to render PostScript to different targets. It used to be part of the cups printing stack, but is no longer used for that.
| +| [GitPython](https://gitpython.readthedocs.org) | 3.1.43 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowGitPython is a python library used to interact with Git repositories
| +| [Go](https://www.golang.org) | 1.23.6 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | compiler |
ShowGo is an open source programming language that makes it easy to build simple, reliable, and efficient software.
| +| [Graphene](https://ebassi.github.io/graphene/) | 1.10.8 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowGraphene is a thin layer of types for graphic libraries
| +| [Gurobi](https://www.gurobi.com) | 12.0.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | math |
ShowThe Gurobi Optimizer is a state-of-the-art solver for mathematical programming. The solvers in the Gurobi Optimizer were designed from the ground up to exploit modern architectures and multi-core processors, using the most advanced implementations of the latest algorithms.
| +| [HDF5](https://portal.hdfgroup.org/display/support) | 1.14.5 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | data |
ShowHDF5 is a data model, library, and file format for storing and managing data. It supports an unlimited variety of datatypes, and is designed for flexible and efficient I/O and for high volume and complex data.
| +| [HDF](https://support.hdfgroup.org/products/hdf4/) | 4.3.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | data |
ShowHDF (also known as HDF4) is a library and multi-object file format for storing and managing data between machines.
| +| [HarfBuzz](https://www.freedesktop.org/wiki/Software/HarfBuzz) | 9.0.0 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | vis |
ShowHarfBuzz is an OpenType text shaping engine.
| +| [Hypre](https://computation.llnl.gov/projects/hypre-scalable-linear-solvers-multigrid-methods) | 2.32.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | numlib |
ShowHypre is a library for solving large, sparse linear systems of equations on massively parallel computers. The problems of interest arise in the simulation codes being developed at LLNL and elsewhere to study physical phenomena in the defense, environmental, energy, and biological sciences.
| +| [ICU](https://icu.unicode.org) | 75.1 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | lib |
ShowICU is a mature, widely used set of C/C++ and Java libraries providing Unicode and Globalization support for software applications.
| +| [IPython](https://ipython.org/index.html) | 8.27.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
ShowIPython provides a rich architecture for interactive computing with: Powerful interactive shells (terminal and Qt-based). A browser-based notebook with support for code, text, mathematical expressions, inline plots and other rich media. Support for interactive data visualization and use of GUI toolkits. Flexible, embeddable interpreters to load into your own projects. Easy to use, high performance tools for parallel computing.
| +| [ISL](https://libisl.sourceforge.io) | 0.26 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | math |
Showisl is a library for manipulating sets and relations of integer points bounded by linear constraints.
| +| [ImageMagick](https://www.imagemagick.org/) | 7.1.1-38 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | vis |
ShowImageMagick is a software suite to create, edit, compose, or convert bitmap images
| +| [Imath](https://imath.readthedocs.io/en/latest/) | 3.1.11 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowImath is a C++ and python library of 2D and 3D vector, matrix, and math operations for computer graphics
| +| [JasPer](https://www.ece.uvic.ca/~frodo/jasper/) | 4.2.4 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | vis |
ShowThe JasPer Project is an open-source initiative to provide a free software-based reference implementation of the codec specified in the JPEG-2000 Part-1 standard.
| +| [Java](http://openjdk.java.net) | 17.0.15 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lang |
ShowJava Platform, Standard Edition (Java SE) lets you develop and deploy Java applications on desktops and servers.
| +| [Java](https://java.com/) | 17
21 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lang |
ShowJava Platform, Standard Edition (Java SE) lets you develop and deploy Java applications on desktops and servers.
| +| [Java](https://openjdk.org) | 21.0.8 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lang |
ShowJava Platform, Standard Edition (Java SE) lets you develop and deploy Java applications on desktops and servers.
| +| [Julia](https://julialang.org) | 1.12.4 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lang |
ShowJulia is a high-level, high-performance dynamic programming language for numerical computing
| +| [KaHIP](https://kahip.github.io/) | 3.17 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | math |
ShowThe graph partitioning framework KaHIP -- Karlsruhe High Quality Partitioning.
| +| [LAME](http://lame.sourceforge.net/) | 3.100 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | data |
ShowLAME is a high quality MPEG Audio Layer III (MP3) encoder licensed under the LGPL.
| +| [LAMMPS](https://www.lammps.org) | 29Aug2024_update2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | chem |
ShowLAMMPS is a classical molecular dynamics code, and an acronym for Large-scale Atomic/Molecular Massively Parallel Simulator. LAMMPS has potentials for solid-state materials (metals, semiconductors) and soft matter (biomolecules, polymers) and coarse-grained or mesoscopic systems. It can be used to model atoms or, more generically, as a parallel particle simulator at the atomic, meso, or continuum scale. LAMMPS runs on single processors or in parallel using message-passing techniques and a spatial-decomposition of the simulation domain. The code is designed to be easy to modify or extend with new functionality.
| +| [LERC](https://github.com/Esri/lerc) | 4.0.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowLERC is an open-source image or raster format which supports rapid encoding and decoding for any pixel type (not just RGB or Byte). Users set the maximum compression error per pixel while encoding, so the precision of the original input image is preserved (within user defined error bounds).
| +| [LLVM](https://llvm.org/) | 18.1.8 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | compiler |
ShowThe LLVM Core libraries provide a modern source- and target-independent optimizer, along with code generation support for many popular CPUs (as well as some less common ones!) These libraries are built around a well specified code representation known as the LLVM intermediate representation ("LLVM IR"). The LLVM Core libraries are well documented, and it is particularly easy to invent your own language (or port an existing compiler) to use LLVM as an optimizer and code generator.
| +| [LibRaw](https://www.libraw.org/) | 0.21.3 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | vis |
ShowThe LibRaw library provides a simple and unified interface for extracting out of RAW files generated by digital photo cameras the following: - RAW data (pixel values) - Metadata necessary for processing RAW (geometry, CFA / Bayer pattern, black level, white balance, etc.) - Embedded preview / thumbnail.
| +| [LibTIFF](https://libtiff.gitlab.io/libtiff/) | 4.6.0 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | lib |
Showtiff: Library and tools for reading and writing TIFF data files
| +| [LittleCMS](https://www.littlecms.com/) | 2.16 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | vis |
ShowLittle CMS intends to be an OPEN SOURCE small-footprint color management engine, with special focus on accuracy and performance.
| +| [Lua](https://www.lua.org/) | 5.4.7 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lang |
ShowLua is a powerful, fast, lightweight, embeddable scripting language. Lua combines simple procedural syntax with powerful data description constructs based on associative arrays and extensible semantics. Lua is dynamically typed, runs by interpreting bytecode for a register-based virtual machine, and has automatic memory management with incremental garbage collection, making it ideal for configuration, scripting, and rapid prototyping.
| +| [M4](https://www.gnu.org/software/m4/m4.html) | 1.4.19 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | devel |
ShowGNU M4 is an implementation of the traditional Unix macro processor. It is mostly SVR4 compatible although it has some extensions (for example, handling more than 9 positional parameters to macros). GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, etc.
| +| [MDI](https://github.com/MolSSI-MDI/MDI_Library) | 1.4.26 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | chem |
ShowThe MolSSI Driver Interface (MDI) project provides a standardized API for fast, on-the-fly communication between computational chemistry codes. This greatly simplifies the process of implementing methods that require the cooperation of multiple software packages and enables developers to write a single implementation that works across many different codes. The API is sufficiently general to support a wide variety of techniques, including QM/MM, ab initio MD, machine learning, advanced sampling, and path integral MD, while also being straightforwardly extensible. Communication between codes is handled by the MDI Library, which enables tight coupling between codes using either the MPI or TCP/IP methods.
| +| [METIS](https://karypis.github.io/glaros/projects/gp.html) | 5.1.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | math |
ShowMETIS is a set of serial programs for partitioning graphs, partitioning finite element meshes, and producing fill reducing orderings for sparse matrices. The algorithms implemented in METIS are based on the multilevel recursive-bisection, multilevel k-way, and multi-constraint partitioning schemes.
| +| [MPC](http://www.multiprecision.org/) | 1.3.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | math |
ShowGnu Mpc is a C library for the arithmetic of complex numbers with arbitrarily high precision and correct rounding of the result. It extends the principles of the IEEE-754 standard for fixed precision real floating point numbers to complex numbers, providing well-defined semantics for every operation. At the same time, speed of operation at high precision is a major design goal.
| +| [MPFR](https://www.mpfr.org) | 4.2.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | math |
ShowThe MPFR library is a C library for multiple-precision floating-point computations with correct rounding.
| +| [MUMPS](https://mumps-solver.org) | 5.7.2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | math |
ShowA parallel sparse direct solver
| +| [Mako](https://www.makotemplates.org) | 1.3.5 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | devel |
ShowA super-fast templating language that borrows the best ideas from the existing templating languages
| +| [Mesa](https://www.mesa3d.org/) | 24.1.3 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | vis |
ShowMesa is an open-source implementation of the OpenGL specification - a system for rendering interactive 3D graphics.
| +| [Meson](https://mesonbuild.com) | 1.4.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
ShowMeson is a cross-platform build system designed to be both as fast and as user friendly as possible.
| +| [NASM](https://www.nasm.us/) | 2.16.03 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | lang |
ShowNASM: General-purpose x86 assembler
| +| [NCCL](https://developer.nvidia.com/nccl) | 2.22.3 | NVIDIA Tesla | iris | lib |
ShowThe NVIDIA Collective Communications Library (NCCL) implements multi-GPU and multi-node collective communication primitives that are performance optimized for NVIDIA GPUs.
| +| [NLopt](http://ab-initio.mit.edu/wiki/index.php/NLopt) | 2.7.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | numlib |
ShowNLopt is a free/open-source library for nonlinear optimization, providing a common interface for a number of different free optimization routines available online as well as original implementations of various other algorithms.
| +| [NSPR](https://developer.mozilla.org/en-US/docs/Mozilla/Projects/NSPR) | 4.35 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowNetscape Portable Runtime (NSPR) provides a platform-neutral API for system level and libc-like functions.
| +| [NSS](https://developer.mozilla.org/en-US/docs/Mozilla/Projects/NSS) | 3.104 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowNetwork Security Services (NSS) is a set of libraries designed to support cross-platform development of security-enabled client and server applications.
| +| [NVHPC](https://developer.nvidia.com/hpc-sdk/) | 24.11 | NVIDIA Tesla | iris | compiler |
ShowC, C++ and Fortran compilers included with the NVIDIA HPC SDK (previously: PGI)
| +| [Nextflow](https://www.nextflow.io/) | 25.04.6 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
ShowNextflow is a reactive workflow framework and a programming DSL that eases writing computational pipelines with complex data
| +| [Ninja](https://ninja-build.org/) | 1.12.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
ShowNinja is a small build system with a focus on speed.
| +| [OPARI2](https://www.score-p.org) | 2.0.8 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | perf |
ShowOPARI2, the successor of Forschungszentrum Juelich's OPARI, is a source-to-source instrumentation tool for OpenMP and hybrid codes. It surrounds OpenMP directives and runtime library calls with calls to the POMP2 measurement interface.
| +| [OSU-Micro-Benchmarks](https://mvapich.cse.ohio-state.edu/benchmarks/) | 7.5 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | perf |
ShowOSU Micro-Benchmarks
| +| [OTF2](https://www.score-p.org) | 3.0.3 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | perf |
ShowThe Open Trace Format 2 is a highly scalable, memory efficient event trace data format plus support library. It is the new standard trace format for Scalasca, Vampir, and TAU and is open for other tools.
| +| [OpenBLAS](https://www.openblas.net/) | 0.3.27 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | numlib |
ShowOpenBLAS is an optimized BLAS library based on GotoBLAS2 1.13 BSD version.
| +| [OpenEXR](https://www.openexr.com/) | 3.2.4 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | vis |
ShowOpenEXR is a high dynamic-range (HDR) image file format developed by Industrial Light & Magic for use in computer imaging applications
| +| [OpenFOAM](https://www.openfoam.com/) | v2406 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | cae |
ShowOpenFOAM is a free, open source CFD software package. OpenFOAM has an extensive range of features to solve anything from complex fluid flows involving chemical reactions, turbulence and heat transfer, to solid dynamics and electromagnetics.
| +| [OpenJPEG](https://www.openjpeg.org/) | 2.5.2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowOpenJPEG is an open-source JPEG 2000 codec written in C language. It has been developed in order to promote the use of JPEG 2000, a still-image compression standard from the Joint Photographic Experts Group (JPEG). Since may 2015, it is officially recognized by ISO/IEC and ITU-T as a JPEG 2000 Reference Software.
| +| [OpenMPI](https://www.open-mpi.org/) | 5.0.3 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | mpi |
ShowThe Open MPI Project is an open source MPI-3 implementation.
| +| [OpenPGM](https://code.google.com/p/openpgm/) | 5.2.122 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | system |
ShowOpenPGM is an open source implementation of the Pragmatic General Multicast (PGM) specification in RFC 3208 available at www.ietf.org. PGM is a reliable and scalable multicast protocol that enables receivers to detect loss, request retransmission of lost data, or notify an application of unrecoverable loss. PGM is a receiver-reliable protocol, which means the receiver is responsible for ensuring all data is received, absolving the sender of reception responsibility.
| +| [OpenSSL](https://www.openssl.org/) | 3 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | system |
ShowThe OpenSSL Project is a collaborative effort to develop a robust, commercial-grade, full-featured, and Open Source toolchain implementing the Secure Sockets Layer (SSL v2/v3) and Transport Layer Security (TLS v1) protocols as well as a full-strength general purpose cryptography library.
| +| [Osi](https://github.com/coin-or/Osi) | 0.108.11 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | math |
ShowOsi (Open Solver Interface) provides an abstract base class to a generic linear programming (LP) solver, along with derived classes for specific solvers. Many applications may be able to use the Osi to insulate themselves from a specific LP solver. That is, programs written to the OSI standard may be linked to any solver with an OSI interface and should produce correct results. The OSI has been significantly extended compared to its first incarnation. Currently, the OSI supports linear programming solvers and has rudimentary support for integer programming.
| +| [PAPI](https://icl.cs.utk.edu/projects/papi/) | 7.1.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | perf |
ShowPAPI provides the tool designer and application engineer with a consistent interface and methodology for use of the performance counter hardware found in most major microprocessors. PAPI enables software engineers to see, in near real time, the relation between software performance and processor events. In addition Component PAPI provides access to a collection of components that expose performance measurement opportunites across the hardware and software stack.
| +| [PCRE2](https://www.pcre.org/) | 10.43 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | devel |
ShowThe PCRE library is a set of functions that implement regular expression pattern matching using the same syntax and semantics as Perl 5.
| +| [PCRE](https://www.pcre.org/) | 8.45 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | devel |
ShowThe PCRE library is a set of functions that implement regular expression pattern matching using the same syntax and semantics as Perl 5.
| +| [PDT](https://www.cs.uoregon.edu/research/pdt/) | 3.25.2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | perf |
ShowProgram Database Toolkit (PDT) is a framework for analyzing source code written in several programming languages and for making rich program knowledge accessible to developers of static and dynamic analysis tools. PDT implements a standard program representation, the program database (PDB), that can be accessed in a uniform way through a class library supporting common PDB operations.
| +| [PETSc](https://www.mcs.anl.gov/petsc) | 3.23.5 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | numlib |
ShowPETSc, pronounced PET-see (the S is silent), is a suite of data structures and routines for the scalable (parallel) solution of scientific applications modeled by partial differential equations.
| +| [PLUMED](https://www.plumed.org) | 2.9.3 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | chem |
ShowPLUMED is an open source library for free energy calculations in molecular systems which works together with some of the most popular molecular dynamics engines. Free energy calculations can be performed as a function of many order parameters with a particular focus on biological problems, using state of the art methods such as metadynamics, umbrella sampling and Jarzynski-equation based steered MD. The software, written in C++, can be easily interfaced with both fortran and C/C++ codes.
| +| [PMIx](https://pmix.org/) | 5.0.2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowProcess Management for Exascale Environments PMI Exascale (PMIx) represents an attempt to provide an extended version of the PMI standard specifically designed to support clusters up to and including exascale sizes. The overall objective of the project is not to branch the existing pseudo-standard definitions - in fact, PMIx fully supports both of the existing PMI-1 and PMI-2 APIs - but rather to (a) augment and extend those APIs to eliminate some current restrictions that impact scalability, and (b) provide a reference implementation of the PMI-server that demonstrates the desired level of scalability.
| +| [POV-Ray](https://www.povray.org/) | 3.7.0.10 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | vis |
ShowThe Persistence of Vision Raytracer, or POV-Ray, is a ray tracing program which generates images from a text-based scene description, and is available for a variety of computer platforms. POV-Ray is a high-quality, Free Software tool for creating stunning three-dimensional graphics. The source code is available for those wanting to do their own ports.
| +| [PROJ](https://proj.org) | 9.4.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowProgram proj is a standard Unix filter function which converts geographic longitude and latitude coordinates into cartesian coordinates
| +| [PRRTE](https://docs.prrte.org/) | 3.0.5 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowPRRTE is the PMIx Reference RunTime Environment
| +| [Pandoc](https://pandoc.org) | 3.6.2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
ShowIf you need to convert files from one markup format into another, pandoc is your swiss-army knife
| +| [Pango](https://www.pango.org/) | 1.54.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | vis |
ShowPango is a library for laying out and rendering of text, with an emphasis on internationalization. Pango can be used anywhere that text layout is needed, though most of the work on Pango so far has been done in the context of the GTK+ widget toolkit. Pango forms the core of text and font handling for GTK+-2.x.
| +| [ParMETIS](https://karypis.github.io/glaros/projects/gp.html) | 4.0.3 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | math |
ShowParMETIS is an MPI-based parallel library that implements a variety of algorithms for partitioning unstructured graphs, meshes, and for computing fill-reducing orderings of sparse matrices. ParMETIS extends the functionality provided by METIS and includes routines that are especially suited for parallel AMR computations and large scale numerical simulations. The algorithms implemented in ParMETIS are based on the parallel multilevel k-way graph-partitioning, adaptive repartitioning, and parallel multi-constrained partitioning schemes.
| +| [ParaView](https://www.paraview.org) | 5.13.2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | vis |
ShowParaView is a scientific parallel visualizer.
| +| [Paraver](https://tools.bsc.es/paraver) | 4.12.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | perf |
ShowA very powerful performance visualization and analysis tool based on traces that can be used to analyse any information that is expressed on its input trace format. Traces for parallel MPI, OpenMP and other programs can be genereated with Extrae.
| +| [Perl-bundle-CPAN](https://www.perl.org/) | 5.38.2 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | lang |
ShowA set of common packages from CPAN
| +| [Perl](https://www.perl.org/) | 5.38.0 | NVIDIA Tesla | iris | lang |
ShowLarry Wall's Practical Extraction and Report Language Includes a small selection of extra CPAN packages for core functionality.
| +| [Perl](https://www.perl.org/) | 5.38.0
5.38.2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lang |
ShowLarry Wall's Practical Extraction and Report Language Includes a small selection of extra CPAN packages for core functionality.
| +| [Pillow](https://pillow.readthedocs.org/) | 10.4.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | vis |
ShowPillow is the 'friendly PIL fork' by Alex Clark and Contributors. PIL is the Python Imaging Library by Fredrik Lundh and Contributors.
| +| [PnetCDF](https://parallel-netcdf.github.io/) | 1.14.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | data |
ShowParallel netCDF: A Parallel I/O Library for NetCDF File Access
| +| [PostgreSQL](https://www.postgresql.org/) | 16.4 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | data |
ShowPostgreSQL is a powerful, open source object-relational database system. It is fully ACID compliant, has full support for foreign keys, joins, views, triggers, and stored procedures (in multiple languages). It includes most SQL:2008 data types, including INTEGER, NUMERIC, BOOLEAN, CHAR, VARCHAR, DATE, INTERVAL, and TIMESTAMP. It also supports storage of binary large objects, including pictures, sounds, or video. It has native programming interfaces for C/C++, Java, .Net, Perl, Python, Ruby, Tcl, ODBC, among others, and exceptional documentation.
| +| [PuLP](https://github.com/coin-or/pulp) | 2.8.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
ShowPuLP is an LP modeler written in Python. PuLP can generate MPS or LP files and call GLPK, COIN-OR CLP/CBC, CPLEX, GUROBI, MOSEK, XPRESS, CHOCO, MIPCL, SCIP to solve linear problems.
| +| [PyTorch](https://pytorch.org/) | 2.6.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | ai |
ShowTensors and Dynamic neural networks in Python with strong GPU acceleration. PyTorch is a deep learning framework that puts Python first.
| +| [PyYAML](https://github.com/yaml/pyyaml) | 6.0.2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowPyYAML is a YAML parser and emitter for the Python programming language.
| +| [Python-bundle-PyPI](https://python.org/) | 2024.06 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | lang |
ShowBundle of Python packages from PyPI
| +| [Python](https://python.org/) | 3.12.3 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lang |
ShowPython is a programming language that lets you work more quickly and integrate your systems more effectively.
| +| [Qhull](http://www.qhull.org) | 2020.2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | math |
ShowQhull computes the convex hull, Delaunay triangulation, Voronoi diagram, halfspace intersection about a point, furthest-site Delaunay triangulation, and furthest-site Voronoi diagram. The source code runs in 2-d, 3-d, 4-d, and higher dimensions. Qhull implements the Quickhull algorithm for computing the convex hull.
| +| [Qt6](https://qt.io/) | 6.7.2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | devel |
ShowQt is a comprehensive cross-platform C++ application framework.
| +| [R-bundle-Bioconductor](https://bioconductor.org) | 3.20 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | bio |
ShowBioconductor provides tools for the analysis and coprehension of high-throughput genomic data.
| +| [R-bundle-CRAN](https://www.r-project.org/) | 2024.11 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lang |
ShowBundle of R packages from CRAN
| +| [RE2](https://github.com/google/re2) | 2024-07-02 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowRE2 is a fast, safe, thread-friendly alternative to backtracking regular expression engines like those used in PCRE, Perl, and Python. It is a C++ library.
| +| [R](https://www.r-project.org/) | 4.4.2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lang |
ShowR is a free software environment for statistical computing and graphics.
| +| [RapidJSON](https://rapidjson.org) | 1.1.0-20240815 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowA fast JSON parser/generator for C++ with both SAX/DOM style API
| +| [ReFrame](https://github.com/reframe-hpc/reframe) | 4.8.2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | devel |
ShowReFrame is a framework for writing regression tests for HPC systems.
| +| [Rust](https://www.rust-lang.org) | 1.78.0 | NVIDIA Tesla | iris | lang |
ShowRust is a systems programming language that runs blazingly fast, prevents segfaults, and guarantees thread safety.
| +| [Rust](https://www.rust-lang.org) | 1.78.0
1.83.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lang |
ShowRust is a systems programming language that runs blazingly fast, prevents segfaults, and guarantees thread safety.
| +| [SCOTCH](https://www.labri.fr/perso/pelegrin/scotch/) | 7.0.6 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | math |
ShowSoftware package and libraries for sequential and parallel graph partitioning, static mapping, and sparse matrix block ordering, and sequential mesh and hypergraph partitioning.
| +| [SDL2](https://www.libsdl.org/) | 2.30.6 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | lib |
ShowSDL: Simple DirectMedia Layer, a cross-platform multimedia library
| +| [SIONlib](https://www.fz-juelich.de/ias/jsc/EN/Expertise/Support/Software/SIONlib/_node.html) | 1.7.7 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowSIONlib is a scalable I/O library for parallel access to task-local files. The library not only supports writing and reading binary data to or from several thousands of processors into a single or a small number of physical files, but also provides global open and close functions to access SIONlib files in parallel. This package provides a stripped-down installation of SIONlib for use with performance tools (e.g., Score-P), with renamed symbols to avoid conflicts when an application using SIONlib itself is linked against a tool requiring a different SIONlib version.
| +| [SLEPc](https://slepc.upv.es) | 3.23.2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | numlib |
ShowSLEPc (Scalable Library for Eigenvalue Problem Computations) is a software library for the solution of large scale sparse eigenvalue problems on parallel computers. It is an extension of PETSc and can be used for either standard or generalized eigenproblems, with real or complex arithmetic. It can also be used for computing a partial SVD of a large, sparse, rectangular matrix, and to solve quadratic eigenvalue problems.
| +| [SQLite](https://www.sqlite.org/) | 3.45.3 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | devel |
ShowSQLite: SQL Database Engine in a C Library
| +| [SWIG](http://www.swig.org/) | 4.2.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | devel |
ShowSWIG is a software development tool that connects programs written in C and C++ with a variety of high-level programming languages.
| +| [ScaFaCoS](http://www.scafacos.de/) | 1.0.4 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | math |
ShowScaFaCoS is a library of scalable fast coulomb solvers.
| +| [ScaLAPACK](https://www.netlib.org/scalapack/) | 2.2.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | numlib |
ShowThe ScaLAPACK (or Scalable LAPACK) library includes a subset of LAPACK routines redesigned for distributed memory MIMD parallel computers.
| +| [Scalasca](https://www.scalasca.org/) | 2.6.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | perf |
ShowScalasca is a software tool that supports the performance optimization of parallel programs by measuring and analyzing their runtime behavior. The analysis identifies potential performance bottlenecks -- in particular those concerning communication and synchronization -- and offers guidance in exploring their causes.
| +| [SciPy-bundle](https://python.org/) | 2024.05 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | lang |
ShowBundle of Python packages for scientific software
| +| [Score-P](https://www.score-p.org) | 8.4 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | perf |
ShowThe Score-P measurement infrastructure is a highly scalable and easy-to-use tool suite for profiling, event tracing, and online analysis of HPC applications.
| +| [Siesta](https://siesta-project.org/siesta/About/overview.html) | 5.4.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | phys |
ShowSIESTA is both a method and its computer program implementation, to perform efficient electronic structure calculations and ab initio molecular dynamics simulations of molecules and solids.
| +| [Simple-DFTD3](https://dftd3.readthedocs.io) | 1.2.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | chem |
ShowReimplementation of the D3 dispersion correction. The s-dftd3 project aims to provide a user-friendly and uniform interface to the D3 dispersion model and for the calculation of DFT-D3 dispersion corrections.
| +| [Spack](https://spack.io/) | 1.1.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | devel |
ShowSpack is a package manager for supercomputers, Linux, and macOS. It makes installing scientific software easy. With Spack, you can build a package with multiple versions, configurations, platforms, and compilers, and all of these builds can coexist on the same machine.
| +| [Spark](https://spark.apache.org) | 4.0.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | devel |
ShowSpark is Hadoop MapReduce done in memory
| +| [SuiteSparse](https://faculty.cse.tamu.edu/davis/suitesparse.html) | 7.10.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | numlib |
ShowSuiteSparse is a collection of libraries to manipulate sparse matrices.
| +| [SuperLU_DIST](https://crd-legacy.lbl.gov/~xiaoye/SuperLU/) | 9.1.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | numlib |
ShowSuperLU is a general purpose library for the direct solution of large, sparse, nonsymmetric systems of linear equations on high performance machines.
| +| [Szip](https://docs.hdfgroup.org/archive/support/doc_resource/SZIP/index.html) | 2.1.1 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | tools |
ShowSzip compression software, providing lossless compression of scientific data
| +| [TOML-Fortran](https://github.com/toml-f/toml-f) | 0.4.2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
ShowTOML parser for Fortran projects
| +| [Tcl](https://www.tcl.tk/) | 8.6.14 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lang |
ShowTcl (Tool Command Language) is a very powerful but easy to learn dynamic programming language, suitable for a very wide range of uses, including web and desktop applications, networking, administration, testing and many more.
| +| [Tk](https://www.tcl.tk/) | 8.6.14 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | vis |
ShowTk is an open source, cross-platform widget toolchain that provides a library of basic elements for building a graphical user interface (GUI) in many different programming languages.
| +| [Tkinter](https://python.org/) | 3.12.3 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lang |
ShowTkinter module, built with the Python buildsystem
| +| [UCC-CUDA](https://www.openucx.org/) | 1.3.0 | NVIDIA Tesla | iris | lib |
ShowUCC (Unified Collective Communication) is a collective communication operations API and library that is flexible, complete, and feature-rich for current and emerging programming models and runtimes. This module adds the UCC CUDA support.
| +| [UCC](https://www.openucx.org/) | 1.3.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowUCC (Unified Collective Communication) is a collective communication operations API and library that is flexible, complete, and feature-rich for current and emerging programming models and runtimes.
| +| [UCX-CUDA](http://www.openucx.org/) | 1.16.0 | NVIDIA Tesla | iris | lib |
ShowUnified Communication X An open-source production grade communication framework for data centric and high-performance applications This module adds the UCX CUDA support.
| +| [UCX](https://www.openucx.org/) | 1.16.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowUnified Communication X An open-source production grade communication framework for data centric and high-performance applications
| +| [UDUNITS](https://www.unidata.ucar.edu/software/udunits/) | 2.2.28 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | phys |
ShowUDUNITS supports conversion of unit specifications between formatted and binary forms, arithmetic manipulation of units, and conversion of values between compatible scales of measurement.
| +| [UnZip](http://www.info-zip.org/UnZip.html) | 6.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
ShowUnZip is an extraction utility for archives compressed in .zip format (also called "zipfiles"). Although highly compatible both with PKWARE's PKZIP and PKUNZIP utilities for MS-DOS and with Info-ZIP's own Zip program, our primary objectives have been portability and non-MSDOS functionality.
| +| [VMD](https://www.ks.uiuc.edu/Research/vmd) | 1.9.4a57 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | vis |
ShowVMD is a molecular visualization program for displaying, animating, and analyzing large biomolecular systems using 3-D graphics and built-in scripting.
| +| [VTK](https://www.vtk.org) | 9.3.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | vis |
ShowThe Visualization Toolkit (VTK) is an open-source, freely available software system for 3D computer graphics, image processing and visualization. VTK consists of a C++ class library and several interpreted interface layers including Tcl/Tk, Java, and Python. VTK supports a wide variety of visualization algorithms including: scalar, vector, tensor, texture, and volumetric methods; and advanced modeling techniques such as: implicit modeling, polygon reduction, mesh smoothing, cutting, contouring, and Delaunay triangulation.
| +| [Valgrind](https://valgrind.org) | 3.24.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | debugger |
ShowValgrind: Debugging and profiling tools
| +| [Voro++](http://math.lbl.gov/voro++/) | 0.4.6 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | math |
ShowVoro++ is a software library for carrying out three-dimensional computations of the Voronoi tessellation. A distinguishing feature of the Voro++ library is that it carries out cell-based calculations, computing the Voronoi cell for each particle individually. It is particularly well-suited for applications that rely on cell-based statistics, where features of Voronoi cells (eg. volume, centroid, number of faces) can be used to analyze a system of particles.
| +| [Wayland](https://wayland.freedesktop.org/) | 1.23.0 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | vis |
ShowWayland is a project to define a protocol for a compositor to talk to its clients as well as a library implementation of the protocol. The compositor can be a standalone display server running on Linux kernel modesetting and evdev input devices, an X application, or a wayland client itself. The clients can be traditional applications, X servers (rootless or fullscreen) or other display servers.
| +| [X11](https://www.x.org) | 20240607 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | vis |
ShowThe X Window System (X11) is a windowing system for bitmap displays
| +| [XZ](https://tukaani.org/xz/) | 5.4.5 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
Showxz: XZ utilities
| +| [Xerces-C++](https://xerces.apache.org/xerces-c/) | 3.2.5 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowXerces-C++ is a validating XML parser written in a portable subset of C++. Xerces-C++ makes it easy to give your application the ability to read and write XML data. A shared library is provided for parsing, generating, manipulating, and validating XML documents using the DOM, SAX, and SAX2 APIs.
| +| [Xvfb](https://www.x.org/releases/X11R7.6/doc/man/man1/Xvfb.1.xhtml) | 21.1.14 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | vis |
ShowXvfb is an X server that can run on machines with no display hardware and no physical input devices. It emulates a dumb framebuffer using virtual memory.
| +| [Yasm](https://www.tortall.net/projects/yasm/) | 1.3.0 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | lang |
ShowYasm: Complete rewrite of the NASM assembler with BSD license
| +| [Z3](https://github.com/Z3Prover/z3) | 4.13.0 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | tools |
ShowZ3 is a theorem prover from Microsoft Research with support for bitvectors, booleans, arrays, floating point numbers, strings, and other data types. This module includes z3-solver, the Python interface of Z3.
| +| [ZeroMQ](https://www.zeromq.org/) | 4.3.5 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | devel |
ShowZeroMQ looks like an embeddable networking library but acts like a concurrency framework. It gives you sockets that carry atomic messages across various transports like in-process, inter-process, TCP, and multicast. You can connect sockets N-to-N with patterns like fanout, pub-sub, task distribution, and request-reply. It's fast enough to be the fabric for clustered products. Its asynchronous I/O model gives you scalable multicore applications, built as asynchronous message-processing tasks. It has a score of language APIs and runs on most operating systems.
| +| [archspec](https://github.com/archspec/archspec) | 0.2.5 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | tools |
ShowA library for detecting, labeling, and reasoning about microarchitectures
| +| [arpack-ng](https://github.com/opencollab/arpack-ng) | 3.9.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | numlib |
ShowARPACK is a collection of Fortran77 subroutines designed to solve large scale eigenvalue problems.
| +| [arrow-R](https://cran.r-project.org/web/packages/arrow) | 17.0.0.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
ShowR interface to the Apache Arrow C++ library
| +| [assimp](https://github.com/assimp/assimp) | 5.4.3 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | vis |
ShowOpen Asset Import Library (assimp) is a library to import and export various 3d-model-formats including scene-post-processing to generate missing render data.
| +| [at-spi2-atk](https://wiki.gnome.org/Accessibility) | 2.38.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | vis |
ShowAT-SPI 2 toolkit bridge
| +| [at-spi2-core](https://wiki.gnome.org/Accessibility) | 2.54.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | vis |
ShowAssistive Technology Service Provider Interface.
| +| [binutils](https://directory.fsf.org/project/binutils/) | 2.40 | NVIDIA Tesla | iris | tools |
Showbinutils: GNU binary utilities
| +| [binutils](https://directory.fsf.org/project/binutils/) | 2.40
2.42 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
Showbinutils: GNU binary utilities
| +| [build](https://github.com/pypa/build) | 1.2.2.post1 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | devel |
ShowA simple, correct Python build frontend.
| +| [bzip2](https://sourceware.org/bzip2) | 1.0.8 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
Showbzip2 is a freely available, patent free, high-quality data compressor. It typically compresses files to within 10% to 15% of the best available techniques (the PPM family of statistical compressors), whilst being around twice as fast at compression and six times faster at decompression.
| +| [cURL](https://curl.haxx.se) | 8.7.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
Showlibcurl is a free and easy-to-use client-side URL transfer library, supporting DICT, FILE, FTP, FTPS, Gopher, HTTP, HTTPS, IMAP, IMAPS, LDAP, LDAPS, POP3, POP3S, RTMP, RTSP, SCP, SFTP, SMTP, SMTPS, Telnet and TFTP. libcurl supports SSL certificates, HTTP POST, HTTP PUT, FTP uploading, HTTP form based upload, proxies, cookies, user+password authentication (Basic, Digest, NTLM, Negotiate, Kerberos), file transfer resume, http proxy tunneling and more.
| +| [cairo](https://cairographics.org) | 1.18.0 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | vis |
ShowCairo is a 2D graphics library with support for multiple output devices. Currently supported output targets include the X Window System (via both Xlib and XCB), Quartz, Win32, image buffers, PostScript, PDF, and SVG file output. Experimental backends include OpenGL, BeOS, OS/2, and DirectFB
| +| [cffi](https://cffi.readthedocs.io/en/latest/) | 1.16.0 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | tools |
ShowC Foreign Function Interface for Python. Interact with almost any C code from Python, based on C-like declarations that you can often copy-paste from header files or documentation.
| +| [cryptography](https://github.com/pyca/cryptography) | 42.0.8 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | tools |
Showcryptography is a package designed to expose cryptographic primitives and recipes to Python developers.
| +| [double-conversion](https://github.com/google/double-conversion) | 3.3.0 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | lib |
ShowEfficient binary-decimal and decimal-binary conversion routines for IEEE doubles.
| +| [elfutils](https://elfutils.org/) | 0.191 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowThe elfutils project provides libraries and tools for ELF files and DWARF data.
| +| [expat](https://libexpat.github.io) | 2.6.2 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | tools |
ShowExpat is an XML parser library written in C. It is a stream-oriented parser in which an application registers handlers for things the parser might find in the XML document (like start tags).
| +| [expecttest](https://github.com/ezyang/expecttest) | 0.2.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
ShowThis library implements expect tests (also known as "golden" tests). Expect tests are a method of writing tests where instead of hard-coding the expected output of a test, you run the test to get the output, and the test framework automatically populates the expected output. If the output of the test changes, you can rerun the test with the environment variable EXPECTTEST_ACCEPT=1 to automatically update the expected output.
| +| [ffnvcodec](https://git.videolan.org/?p=ffmpeg/nv-codec-headers.git) | 12.2.72.0 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | lib |
ShowFFmpeg nvidia headers. Adds support for nvenc and nvdec. Requires Nvidia GPU and drivers to be present (picked up dynamically).
| +| [flex](http://flex.sourceforge.net/) | 2.6.4 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lang |
ShowFlex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner, sometimes called a tokenizer, is a program which recognizes lexical patterns in text.
| +| [flex](https://github.com/westes/flex) | 2.6.4 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | lang |
ShowFlex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner, sometimes called a tokenizer, is a program which recognizes lexical patterns in text.
| +| [flit](https://github.com/pypa/flit) | 3.9.0 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | tools |
ShowA simple packaging tool for simple packages.
| +| [flook](https://github.com/ElectronicStructureLibrary/flook) | 0.8.4 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | data |
ShowThe fortran-Lua-hook library.
| +| [fontconfig](https://www.freedesktop.org/wiki/Software/fontconfig/) | 2.15.0 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | vis |
ShowFontconfig is a library designed to provide system-wide font configuration, customization and application access.
| +| [fonttools](https://python-markdown.github.io/) | 4.53.1 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | devel |
ShowfontTools is a library for manipulating fonts, written in Python. The project includes the TTX tool, that can convert TrueType and OpenType fonts to and from an XML text format, which is also called TTX. It supports TrueType, OpenType, AFM and to an extent Type 1 and some Mac-specific formats.
| +| [foss](https://docs.easybuild.io/common-toolchains/#common_toolchains_foss) | 2024a | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | toolchain |
ShowGNU Compiler Collection (GCC) based compiler toolchain, including OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK.
| +| [freetype](https://www.freetype.org) | 2.13.2 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | vis |
ShowFreeType 2 is a software font engine that is designed to be small, efficient, highly customizable, and portable while capable of producing high-quality output (glyph images). It can be used in graphics libraries, display servers, font conversion tools, text image generation tools, and many other products as well.
| +| [gettext](https://www.gnu.org/software/gettext/) | 0.22.5 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | tools |
ShowGNU 'gettext' is an important step for the GNU Translation Project, as it is an asset on which we may build many other steps. This package offers to programmers, translators, and even users, a well integrated set of tools and documentation
| +| [gfbf]((none)) | 2024a | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | toolchain |
ShowGNU Compiler Collection (GCC) based compiler toolchain, including FlexiBLAS (BLAS and LAPACK support) and (serial) FFTW.
| +| [giflib](http://giflib.sourceforge.net/) | 5.2.1 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | lib |
Showgiflib is a library for reading and writing gif images. It is API and ABI compatible with libungif which was in wide use while the LZW compression algorithm was patented.
| +| [git](https://git-scm.com) | 2.45.1 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | tools |
ShowGit is a free and open source distributed version control system designed to handle everything from small to very large projects with speed and efficiency.
| +| [gmpy2](https://github.com/aleaxit/gmpy) | 2.2.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | math |
ShowGMP/MPIR, MPFR, and MPC interface to Python 2.6+ and 3.x
| +| [gmsh](https://gmsh.info/) | 4.14.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | math |
ShowGmsh is a 3D finite element grid generator with a build-in CAD engine and post-processor.
| +| [gnuplot](http://gnuplot.sourceforge.net) | 6.0.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | vis |
ShowPortable interactive, function plotting utility
| +| [gocryptfs](https://nuetzlich.net/gocryptfs/) | 2.5.4 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
ShowAn encrypted overlay filesystem written in Go and built on top the go-fuse FUSE library.
| +| [gompi]((none)) | 2024a | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | toolchain |
ShowGNU Compiler Collection (GCC) based compiler toolchain, including OpenMPI for MPI support.
| +| [googletest](https://github.com/google/googletest) | 1.15.2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
ShowGoogle's framework for writing C++ tests on a variety of platforms
| +| [gperf](https://www.gnu.org/software/gperf/) | 3.1 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | devel |
ShowGNU gperf is a perfect hash function generator. For a given list of strings, it produces a hash function and hash table, in form of C or C++ code, for looking up a value depending on the input string. The hash function is perfect, which means that the hash table has no collisions, and the hash table lookup needs a single string comparison only.
| +| [graphite2](https://scripts.sil.org/cms/scripts/page.php?site_id=projects&item_id=graphite_home) | 1.3.14 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | lib |
ShowGraphite is a "smart font" system developed specifically to handle the complexities of lesser-known languages of the world.
| +| [groff](https://www.gnu.org/software/groff) | 1.23.0 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | tools |
ShowGroff (GNU troff) is a typesetting system that reads plain text mixed with formatting commands and produces formatted output.
| +| [grpcio](https://grpc.io/) | 1.70.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowgRPC is a modern, open source, high-performance remote procedure call (RPC) framework that can run anywhere. gRPC enables client and server applications to communicate transparently, and simplifies the building of connected systems.
| +| [gzip](https://www.gnu.org/software/gzip/) | 1.13 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
Showgzip (GNU zip) is a popular data compression program as a replacement for compress
| +| [h5py](https://www.h5py.org/) | 3.12.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | data |
ShowHDF5 for Python (h5py) is a general-purpose Python interface to the Hierarchical Data Format library, version 5. HDF5 is a versatile, mature scientific software library designed for the fast, flexible storage of enormous amounts of data.
| +| [hatchling](https://hatch.pypa.io) | 1.24.2 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | tools |
ShowExtensible, standards compliant build backend used by Hatch, a modern, extensible Python project manager.
| +| [help2man](https://www.gnu.org/software/help2man/) | 1.49.3 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | tools |
Showhelp2man produces simple manual pages from the '--help' and '--version' output of other commands.
| +| [hwloc](https://www.open-mpi.org/projects/hwloc/) | 2.10.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | system |
ShowThe Portable Hardware Locality (hwloc) software package provides a portable abstraction (across OS, versions, architectures, ...) of the hierarchical topology of modern architectures, including NUMA memory nodes, sockets, shared caches, cores and simultaneous multithreading. It also gathers various system attributes such as cache and memory information as well as the locality of I/O devices such as network interfaces, InfiniBand HCAs or GPUs. It primarily aims at helping applications with gathering information about modern computing hardware so as to exploit it accordingly and efficiently.
| +| [hypothesis](https://github.com/HypothesisWorks/hypothesis) | 6.103.1 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | tools |
ShowHypothesis is an advanced testing library for Python. It lets you write tests which are parametrized by a source of examples, and then generates simple and comprehensible examples that make your tests fail. This lets you find more bugs in your code with less work.
| +| [iimpi](https://software.intel.com/parallel-studio-xe) | 2024a | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | toolchain |
ShowIntel C/C++ and Fortran compilers, alongside Intel MPI.
| +| [imkl-FFTW](https://software.intel.com/content/www/us/en/develop/tools/oneapi/components/onemkl.html) | 2024.2.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | numlib |
ShowFFTW interfaces using Intel oneAPI Math Kernel Library
| +| [imkl](https://software.intel.com/content/www/us/en/develop/tools/oneapi/components/onemkl.html) | 2024.2.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | numlib |
ShowIntel oneAPI Math Kernel Library
| +| [impi](https://software.intel.com/content/www/us/en/develop/tools/mpi-library.html) | 2021.13.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | mpi |
ShowIntel MPI Library, compatible with MPICH ABI
| +| [intel-compilers](https://software.intel.com/content/www/us/en/develop/tools/oneapi/hpc-toolkit.html) | 2024.2.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | compiler |
ShowIntel C, C++ & Fortran compilers (classic and oneAPI)
| +| [intel](https://docs.easybuild.io/common-toolchains/#common_toolchains_overview_intel) | 2024a | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | toolchain |
ShowCompiler toolchain including Intel compilers, Intel MPI and Intel Math Kernel Library (MKL).
| +| [intltool](https://freedesktop.org/wiki/Software/intltool/) | 0.51.0 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | devel |
Showintltool is a set of tools to centralize translation of many different file formats using GNU gettext-compatible PO files.
| +| [jbigkit](https://www.cl.cam.ac.uk/~mgk25/jbigkit/) | 2.1 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | vis |
ShowJBIG-KIT is a software implementation of the JBIG1 data compression standard (ITU-T T.82), which was designed for bi-level image data, such as scanned documents.
| +| [jedi](https://github.com/davidhalter/jedi) | 0.19.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
ShowJedi - an awesome autocompletion, static analysis and refactoring library for Python.
| +| [json-c](https://github.com/json-c/json-c) | 0.17 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowJSON-C implements a reference counting object model that allows you to easily construct JSON objects in C, output them as JSON formatted strings and parse JSON formatted strings back into the C representation of JSON objects.
| +| [json-fortran](https://github.com/jacobwilliams/json-fortran) | 9.0.3 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowJSON-Fortran: A Modern Fortran JSON API
| +| [jxrlib](https://github.com/4creators/jxrlib) | 2019.10.9 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowOpen source implementation of jpegxr
| +| [kim-api](https://openkim.org/) | 2.4.1 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | chem |
ShowOpen Knowledgebase of Interatomic Models. KIM is an API and OpenKIM is a collection of interatomic models (potentials) for atomistic simulations. This is a library that can be used by simulation programs to get access to the models in the OpenKIM database. This EasyBuild only installs the API, the models can be installed with the package openkim-models, or the user can install them manually by running kim-api-collections-management install user MODELNAME or kim-api-collections-management install user OpenKIM to install them all.
| +| [libGLU](https://gitlab.freedesktop.org/mesa/glu) | 9.0.3 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | vis |
ShowThe OpenGL Utility Library (GLU) is a computer graphics library for OpenGL.
| +| [libGridXC](https://gitlab.com/siesta-project/libraries/libgridxc) | 2.0.2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | phys |
ShowA library to compute the exchange and correlation energy and potential in spherical (i.e. atoms) or periodic systems.
| +| [libPSML](https://gitlab.com/siesta-project/libraries/libpsml) | 2.1.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | data |
ShowA library to handle pseudopotentials in PSML format
| +| [libarchive](https://www.libarchive.org/) | 3.7.4 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
ShowMulti-format archive and compression library
| +| [libcerf](https://jugit.fz-juelich.de/mlz/libcerf) | 2.4 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | math |
Showlibcerf is a self-contained numeric library that provides an efficient and accurate implementation of complex error functions, along with Dawson, Faddeeva, and Voigt functions.
| +| [libde265](https://github.com/strukturag/libde265) | 1.0.15 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | tools |
Showlibde265 is an open source implementation of the h.265 video codec
| +| [libdeflate](https://github.com/ebiggers/libdeflate) | 1.20 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | system |
ShowHeavily optimized library for DEFLATE/zlib/gzip compression and decompression.
| +| [libdrm](https://dri.freedesktop.org) | 2.4.122 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | lib |
ShowDirect Rendering Manager runtime library.
| +| [libepoxy](https://github.com/anholt/libepoxy) | 1.5.10 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowEpoxy is a library for handling OpenGL function pointer management for you
| +| [libevent](https://libevent.org/) | 2.1.12 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowThe libevent API provides a mechanism to execute a callback function when a specific event occurs on a file descriptor or after a timeout has been reached. Furthermore, libevent also support callbacks due to signals or regular timeouts.
| +| [libfabric](https://ofiwg.github.io/libfabric/) | 1.21.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowLibfabric is a core component of OFI. It is the library that defines and exports the user-space API of OFI, and is typically the only software that applications deal with directly. It works in conjunction with provider libraries, which are often integrated directly into libfabric.
| +| [libfdf](https://gitlab.com/siesta-project/libraries/libfdf) | 0.5.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | data |
ShowLibFDF is the official implementation of the FDF specifications for use in client codes.
| +| [libffi](https://sourceware.org/libffi/) | 3.4.5 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowThe libffi library provides a portable, high level programming interface to various calling conventions. This allows a programmer to call any function specified by a call interface description at run-time.
| +| [libgd](https://libgd.github.io) | 2.3.3 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowGD is an open source code library for the dynamic creation of images by programmers.
| +| [libgeotiff](https://directory.fsf.org/wiki/Libgeotiff) | 1.7.3 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowLibrary for reading and writing coordinate system information from/to GeoTIFF files
| +| [libgit2](https://libgit2.org/) | 1.8.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | devel |
Showlibgit2 is a portable, pure C implementation of the Git core methods provided as a re-entrant linkable library with a solid API, allowing you to write native speed custom Git applications in any language which supports C bindings.
| +| [libglvnd](https://gitlab.freedesktop.org/glvnd/libglvnd) | 1.7.0 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | lib |
Showlibglvnd is a vendor-neutral dispatch layer for arbitrating OpenGL API calls between multiple vendors.
| +| [libheif](https://github.com/strukturag/libheif) | 1.19.5 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | tools |
Showlibheif is an HEIF and AVIF file format decoder and encoder
| +| [libiconv](https://www.gnu.org/software/libiconv) | 1.17 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | lib |
ShowLibiconv converts from one character encoding to another through Unicode conversion
| +| [libjpeg-turbo](https://sourceforge.net/projects/libjpeg-turbo/) | 3.0.1 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | lib |
Showlibjpeg-turbo is a fork of the original IJG libjpeg which uses SIMD to accelerate baseline JPEG compression and decompression. libjpeg is a library that implements JPEG image encoding, decoding and transcoding.
| +| [libogg](https://xiph.org/ogg/) | 1.3.5 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowOgg is a multimedia container format, and the native file and stream format for the Xiph.org multimedia codecs.
| +| [libopus](https://www.opus-codec.org/) | 1.5.2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowOpus is a totally open, royalty-free, highly versatile audio codec. Opus is unmatched for interactive speech and music transmission over the Internet, but is also intended for storage and streaming applications. It is standardized by the Internet Engineering Task Force (IETF) as RFC 6716 which incorporated technology from Skype’s SILK codec and Xiph.Org’s CELT codec.
| +| [libpciaccess](https://cgit.freedesktop.org/xorg/lib/libpciaccess/) | 0.18.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | system |
ShowGeneric PCI access library.
| +| [libpng](http://www.libpng.org/pub/png/libpng.html) | 1.6.43 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | lib |
Showlibpng is the official PNG reference library
| +| [libreadline](https://tiswww.case.edu/php/chet/readline/rltop.html) | 8.2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowThe GNU Readline library provides a set of functions for use by applications that allow users to edit command lines as they are typed in. Both Emacs and vi editing modes are available. The Readline library includes additional functions to maintain a list of previously-entered command lines, to recall and perhaps reedit those lines, and perform csh-like history expansion on previous commands.
| +| [libsndfile](http://www.mega-nerd.com/libsndfile) | 1.2.2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowLibsndfile is a C library for reading and writing files containing sampled sound (such as MS Windows WAV and the Apple/SGI AIFF format) through one standard library interface.
| +| [libsodium](https://doc.libsodium.org/) | 1.0.20 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowSodium is a modern, easy-to-use software library for encryption, decryption, signatures, password hashing and more.
| +| [libtirpc](https://sourceforge.net/projects/libtirpc/) | 1.3.5 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowLibtirpc is a port of Suns Transport-Independent RPC library to Linux.
| +| [libtool](https://www.gnu.org/software/libtool) | 2.4.7 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | lib |
ShowGNU libtool is a generic library support script. Libtool hides the complexity of using shared libraries behind a consistent, portable interface.
| +| [libunwind](https://www.nongnu.org/libunwind/) | 1.8.1 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | lib |
ShowThe primary goal of libunwind is to define a portable and efficient C programming interface (API) to determine the call-chain of a program. The API additionally provides the means to manipulate the preserved (callee-saved) state of each call-frame and to resume execution at any point in the call-chain (non-local goto). The API supports both local (same-process) and remote (across-process) operation. As such, the API is useful in a number of applications
| +| [libvorbis](https://xiph.org/vorbis/) | 1.3.7 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowOgg Vorbis is a fully open, non-proprietary, patent-and-royalty-free, general-purpose compressed audio format
| +| [libwebp](https://developers.google.com/speed/webp/) | 1.4.0 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | lib |
ShowWebP is a modern image format that provides superior lossless and lossy compression for images on the web. Using WebP, webmasters and web developers can create smaller, richer images that make the web faster.
| +| [libxc](https://libxc.gitlab.io) | 6.2.2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | chem |
ShowLibxc is a library of exchange-correlation functionals for density-functional theory. The aim is to provide a portable, well tested and reliable set of exchange and correlation functionals.
| +| [libxml2](https://gitlab.gnome.org/GNOME/libxml2/-/wikis) | 2.12.7 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowLibxml2 is the XML C parser and toolchain developed for the Gnome project (but usable outside of the Gnome platform).
| +| [libxslt](https://gitlab.gnome.org/GNOME/libxslt/-/wikis) | 1.1.42 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowLibxslt is the XSLT C library developed for the GNOME project (but usable outside of the Gnome platform).
| +| [libyaml](https://pyyaml.org/wiki/LibYAML) | 0.2.5 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowLibYAML is a YAML parser and emitter written in C.
| +| [lit](https://llvm.org/docs/CommandGuide/lit.html) | 18.1.8 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | tools |
Showlit is a portable tool for executing LLVM and Clang style test suites, summarizing their results, and providing indication of failures.
| +| [lxml](https://lxml.de/) | 5.3.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowThe lxml XML toolkit is a Pythonic binding for the C libraries libxml2 and libxslt.
| +| [lz4](https://lz4.github.io/lz4/) | 1.9.4 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowLZ4 is lossless compression algorithm, providing compression speed at 400 MB/s per core. It features an extremely fast decoder, with speed in multiple GB/s per core.
| +| [make](https://www.gnu.org/software/make/make.html) | 4.4.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | devel |
ShowGNU version of make utility
| +| [makeinfo](https://www.gnu.org/software/texinfo/) | 7.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | devel |
Showmakeinfo is part of the Texinfo project, the official documentation format of the GNU project.
| +| [maturin](https://github.com/pyo3/maturin) | 1.6.0 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | tools |
ShowThis project is meant as a zero configuration replacement for setuptools-rust and milksnake. It supports building wheels for python 3.5+ on windows, linux, mac and freebsd, can upload them to pypi and has basic pypy and graalpy support.
| +| [mctc-lib](https://grimme-lab.github.io/mctc-lib) | 0.3.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | chem |
ShowCommon tool chain for working with molecular structure data in various applications. This library provides a unified way to perform operations on molecular structure data, like reading and writing to common geometry file formats.
| +| [meson-python](https://github.com/mesonbuild/meson-python) | 0.16.0 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | tools |
ShowPython build backend (PEP 517) for Meson projects
| +| [mpi4py](https://github.com/mpi4py/mpi4py) | 4.0.1 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | lib |
ShowMPI for Python (mpi4py) provides bindings of the Message Passing Interface (MPI) standard for the Python programming language, allowing any Python program to exploit multiple processors.
| +| [mstore](https://github.com/grimme-lab/mstore) | 0.3.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | chem |
ShowMolecular structure store for testing
| +| [ncurses](https://www.gnu.org/software/ncurses/) | 6.5 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | devel |
ShowThe Ncurses (new curses) library is a free software emulation of curses in System V Release 4.0, and more. It uses Terminfo format, supports pads and color and multiple highlights and forms characters and function-key mapping, and has all the other SYSV-curses enhancements over BSD Curses.
| +| [netCDF-C++4](https://www.unidata.ucar.edu/software/netcdf/) | 4.3.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | data |
ShowNetCDF (network Common Data Form) is a set of software libraries and machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data.
| +| [netCDF-Fortran](https://www.unidata.ucar.edu/software/netcdf/) | 4.6.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | data |
ShowNetCDF (network Common Data Form) is a set of software libraries and machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data.
| +| [netCDF](https://www.unidata.ucar.edu/software/netcdf/) | 4.9.2 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | data |
ShowNetCDF (network Common Data Form) is a set of software libraries and machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data.
| +| [netcdf4-python](https://unidata.github.io/netcdf4-python/) | 1.7.1.post2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | data |
ShowPython/numpy interface to netCDF.
| +| [nettle](https://www.lysator.liu.se/~nisse/nettle/) | 3.10 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowNettle is a cryptographic library that is designed to fit easily in more or less any context: In crypto toolkits for object-oriented languages (C++, Python, Pike, ...), in applications like LSH or GNUPG, or even in kernel space.
| +| [networkx](https://pypi.python.org/pypi/networkx) | 3.4.2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
ShowNetworkX is a Python package for the creation, manipulation, and study of the structure, dynamics, and functions of complex networks.
| +| [nlohmann_json](https://github.com/nlohmann/json) | 3.11.3 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowJSON for Modern C++
| +| [nodejs](https://nodejs.org) | 20.13.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lang |
ShowNode.js is a platform built on Chrome's JavaScript runtime for easily building fast, scalable network applications. Node.js uses an event-driven, non-blocking I/O model that makes it lightweight and efficient, perfect for data-intensive real-time applications that run across distributed devices.
| +| [numactl](https://github.com/numactl/numactl) | 2.0.16 | NVIDIA Tesla | iris | tools |
ShowThe numactl program allows you to run your application program on specific cpu's and memory nodes. It does this by supplying a NUMA memory policy to the operating system before running your program. The libnuma library provides convenient ways for you to add NUMA memory policies into your own program.
| +| [numactl](https://github.com/numactl/numactl) | 2.0.18 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
ShowThe numactl program allows you to run your application program on specific cpu's and memory nodes. It does this by supplying a NUMA memory policy to the operating system before running your program. The libnuma library provides convenient ways for you to add NUMA memory policies into your own program.
| +| [occt](https://www.opencascade.com/) | 7.8.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | cae |
ShowOpen CASCADE Technology (OCCT) is an object-oriented C++ class library designed for rapid production of sophisticated domain-specific CAD/CAM/CAE applications.
| +| [optree](https://optree.readthedocs.io/en/latest/) | 0.14.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowOptimized PyTree Utilities
| +| [parameterized](https://github.com/wolever/parameterized) | 0.9.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
ShowParameterized testing with any Python test framework
| +| [patchelf](https://github.com/NixOS/patchelf) | 0.18.0 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | tools |
ShowPatchELF is a small utility to modify the dynamic linker and RPATH of ELF executables.
| +| [petsc4py](https://gitlab.com/petsc/petsc) | 3.23.5 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
Showpetsc4py are Python bindings for PETSc, the Portable, Extensible Toolchain for Scientific Computation.
| +| [pixman](http://www.pixman.org/) | 0.43.4 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | vis |
ShowPixman is a low-level software library for pixel manipulation, providing features such as image compositing and trapezoid rasterization. Important users of pixman are the cairo graphics library and the X server.
| +| [pkgconf](https://github.com/pkgconf/pkgconf) | 1.8.0
2.2.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | devel |
Showpkgconf is a program which helps to configure compiler and linker flags for development libraries. It is similar to pkg-config from freedesktop.org.
| +| [poetry](https://python-poetry.org) | 1.8.3 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | tools |
ShowPython packaging and dependency management made easy. Poetry helps you declare, manage and install dependencies of Python projects, ensuring you have the right stack everywhere.
| +| [protobuf-python](https://github.com/google/protobuf/) | 5.28.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | devel |
ShowPython Protocol Buffers runtime library.
| +| [protobuf](https://github.com/protocolbuffers/protobuf) | 28.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | devel |
ShowProtocol Buffers (a.k.a., protobuf) are Google's language-neutral, platform-neutral, extensible mechanism for serializing structured data.
| +| [psutil](https://github.com/giampaolo/psutil) | 6.0.0 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | lib |
ShowA cross-platform process and system utilities module for Python
| +| [pybind11](https://pybind11.readthedocs.io) | 2.12.0 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | lib |
Showpybind11 is a lightweight header-only library that exposes C++ types in Python and vice versa, mainly to create Python bindings of existing C++ code.
| +| [pytest-flakefinder](https://github.com/dropbox/pytest-flakefinder) | 1.1.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
ShowRuns tests multiple times to expose flakiness.
| +| [pytest-rerunfailures](https://github.com/pytest-dev/pytest-rerunfailures) | 15.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
Showpytest plugin to re-run tests to eliminate flaky failures.
| +| [pytest-shard](https://github.com/AdamGleave/pytest-shard) | 0.1.2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
Showpytest plugin to support parallelism across multiple machines. Shards tests based on a hash of their test name enabling easy parallelism across machines, suitable for a wide variety of continuous integration services. Tests are split at the finest level of granularity, individual test cases, enabling parallelism even if all of your tests are in a single file (or even single parameterized test method).
| +| [pytest-subtests](https://github.com/pytest-dev/pytest-subtests) | 0.13.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
Showunittest subTest() support and subtests fixture.
| +| [re2c](https://re2c.org) | 3.1 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | tools |
Showre2c is a free and open-source lexer generator for C and C++. Its main goal is generating fast lexers: at least as fast as their reasonably optimized hand-coded counterparts. Instead of using traditional table-driven approach, re2c encodes the generated finite state automata directly in the form of conditional jumps and comparisons.
| +| [ruamel.yaml](https://sourceforge.net/projects/ruamel-yaml) | 0.18.6 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lang |
Showruamel.yaml is a YAML 1.2 loader/dumper package for Python.
| +| [scikit-build](https://scikit-build.readthedocs.io/en/latest) | 0.17.6 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | lib |
ShowScikit-Build, or skbuild, is an improved build system generator for CPython C/C++/Fortran/Cython extensions.
| +| [setuptools-rust](https://github.com/PyO3/setuptools-rust) | 1.9.0 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | tools |
Showsetuptools-rust is a plugin for setuptools to build Rust Python extensions implemented with PyO3 or rust-cpython.
| +| [snakemake](https://snakemake.readthedocs.io) | 9.3.5 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
ShowThe Snakemake workflow management system is a tool to create reproducible and scalable data analyses.
| +| [snappy](https://github.com/google/snappy) | 1.2.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowSnappy is a compression/decompression library. It does not aim for maximum compression, or compatibility with any other compression library; instead, it aims for very high speeds and reasonable compression.
| +| [sympy](https://sympy.org/) | 1.13.3 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | math |
ShowSymPy is a Python library for symbolic mathematics. It aims to become a full-featured computer algebra system (CAS) while keeping the code as simple as possible in order to be comprehensible and easily extensible. SymPy is written entirely in Python and does not require any external libraries.
| +| [tbb](https://github.com/oneapi-src/oneTBB) | 2021.13.0 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | lib |
ShowIntel(R) Threading Building Blocks (Intel(R) TBB) lets you easily write parallel C++ programs that take full advantage of multicore performance, that are portable, composable and have future-proof scalability.
| +| [test-drive](https://github.com/fortran-lang/test-drive) | 0.5.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lang |
ShowThis project offers a lightweight, procedural unit testing framework based on nothing but standard Fortran.
| +| [tlparse](https://github.com/ezyang/tlparse) | 0.3.37 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
ShowParse structured PT2 (PyTorch 2) logs
| +| [tmpi](https://github.com/Azrael3000/tmpi/) | 1.0.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | debugger |
ShowRun multiple MPI processes as a grid in a new tmux window and multiplex keyboard input to all of them. Useful for debugging MPI application with GDB.
| +| [unittest-xml-reporting](http://github.com/xmlrunner/unittest-xml-reporting) | 3.1.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
ShowA unittest test runner that can save test results to XML files in xUnit format. The files can be consumed by a wide range of tools, such as build systems, IDEs and continuous integration servers.
| +| [utf8proc](https://github.com/JuliaStrings/utf8proc) | 2.9.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
Showutf8proc is a small, clean C library that provides Unicode normalization, case-folding, and other operations for data in the UTF-8 encoding.
| +| [util-linux](https://www.kernel.org/pub/linux/utils/util-linux) | 2.40 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | tools |
ShowSet of Linux utilities
| +| [virtualenv](https://github.com/pypa/virtualenv) | 20.26.2 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | tools |
ShowA tool for creating isolated virtual python environments.
| +| [wxWidgets](https://www.wxwidgets.org) | 3.2.6 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | vis |
ShowwxWidgets is a C++ library that lets developers create applications for Windows, Mac OS X, Linux and other platforms with a single code base. It has popular language bindings for Python, Perl, Ruby and many other languages, and unlike other cross-platform toolkits, wxWidgets gives applications a truly native look and feel because it uses the platform's native API rather than emulating the GUI.
| +| [x264](https://www.videolan.org/developers/x264.html) | 20240513 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | vis |
Showx264 is a free software library and application for encoding video streams into the H.264/MPEG-4 AVC compression format, and is released under the terms of the GNU GPL.
| +| [x265](https://x265.org/) | 3.6 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | vis |
Showx265 is a free software library and application for encoding video streams into the H.265 AVC compression format, and is released under the terms of the GNU GPL.
| +| [xmlf90](https://gitlab.com/siesta-project/libraries/xmlf90) | 1.6.3 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | data |
ShowA fast XML parser and generator in Fortran
| +| [xorg-macros](https://gitlab.freedesktop.org/xorg/util/macros) | 1.20.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | devel |
ShowX.org macros utilities.
| +| [xprop](https://www.x.org/wiki/) | 1.2.8 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | vis |
ShowThe xprop utility is for displaying window and font properties in an X server. One window or font is selected using the command line arguments or possibly in the case of a window, by clicking on the desired window. A list of properties is then given, possibly with formatting information.
| +| [xxd](https://www.vim.org) | 9.1.1275 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | tools |
Showxxd is part of the VIM package and this will only install xxd, not vim! xxd converts to/from hexdumps of binary files.
| +| [zlib](https://www.zlib.net/) | 1.2.13 | NVIDIA Tesla | iris | lib |
Showzlib is designed to be a free, general-purpose, legally unencumbered -- that is, not covered by any patents -- lossless data-compression library for use on virtually any computer hardware and operating system.
| +| [zlib](https://www.zlib.net/) | 1.2.13
1.3.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
Showzlib is designed to be a free, general-purpose, legally unencumbered -- that is, not covered by any patents -- lossless data-compression library for use on virtually any computer hardware and operating system.
| +| [zstd](https://facebook.github.io/zstd) | 1.5.6 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowZstandard is a real-time compression algorithm, providing high compression ratios. It offers a very wide range of compression/speed trade-off, while being backed by a very fast decoder. It also offers a special mode for small data, called dictionary compression, and can create dictionaries from any sample set.
| \ No newline at end of file diff --git a/docs/software/swsets/2025a.md b/docs/software/swsets/2025a.md new file mode 100644 index 000000000..df4fc2d3e --- /dev/null +++ b/docs/software/swsets/2025a.md @@ -0,0 +1,295 @@ +| Software | Version | Architectures | Clusters | Category | Description | +|:------------------------------------------------------------------------------------------------------|:-----------------|:-------------------------------------------------------|:-----------|:-----------|:-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------| +| [AOCL-BLAS](https://github.com/amd/blis) | 5.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | numlib |
ShowAOCL-BLAS is AMD's optimized version of BLAS targeted for AMD EPYC and Ryzen CPUs.
| +| [Abseil](https://abseil.io/) | 20250512.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowAbseil is an open-source collection of C++ library code designed to augment the C++ standard library. The Abseil library code is collected from Google's own C++ code base, has been extensively tested and used in production, and is the same code we depend on in our daily coding lives.
| +| [Armadillo](https://arma.sourceforge.net/) | 14.6.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | numlib |
ShowArmadillo is an open-source C++ linear algebra library (matrix maths) aiming towards a good balance between speed and ease of use. Integer, floating point and complex numbers are supported, as well as a subset of trigonometric and statistics functions.
| +| [Arrow](https://arrow.apache.org) | 22.0.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | data |
ShowApache Arrow (incl. PyArrow Python bindings), a cross-language development platform for in-memory data.
| +| [Autoconf](https://www.gnu.org/software/autoconf/) | 2.72 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | devel |
ShowAutoconf is an extensible package of M4 macros that produce shell scripts to automatically configure software source code packages. These scripts can adapt the packages to many kinds of UNIX-like systems without manual user intervention. Autoconf creates a configuration script for a package from a template file that lists the operating system features that the package can use, in the form of M4 macro calls.
| +| [Automake](https://www.gnu.org/software/automake/automake.html) | 1.16.5 | NVIDIA Tesla | iris | devel |
ShowAutomake: GNU Standards-compliant Makefile generator
| +| [Automake](https://www.gnu.org/software/automake/automake.html) | 1.17 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | devel |
ShowAutomake: GNU Standards-compliant Makefile generator
| +| [Autotools](https://autotools.io) | 20231222 | NVIDIA Tesla | iris | devel |
ShowThis bundle collect the standard GNU build tools: Autoconf, Automake and libtool
| +| [Autotools](https://autotools.io) | 20240712 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | devel |
ShowThis bundle collect the standard GNU build tools: Autoconf, Automake and libtool
| +| [BLIS](https://github.com/flame/blis/) | 1.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | numlib |
ShowBLIS is a portable software framework for instantiating high-performance BLAS-like dense linear algebra libraries.
| +| [Bison](https://www.gnu.org/software/bison) | 3.8.2 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | lang |
ShowBison is a general-purpose parser generator that converts an annotated context-free grammar into a deterministic LR or generalized LR (GLR) parser employing LALR(1) parser tables.
| +| [Boost](https://www.boost.org/) | 1.88.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | devel |
ShowBoost provides free peer-reviewed portable C++ source libraries.
| +| [Brotli](https://github.com/google/brotli) | 1.1.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowBrotli is a generic-purpose lossless compression algorithm that compresses data using a combination of a modern variant of the LZ77 algorithm, Huffman coding and 2nd order context modeling, with a compression ratio comparable to the best currently available general-purpose compression methods. It is similar in speed with deflate but offers more dense compression. The specification of the Brotli Compressed Data Format is defined in RFC 7932.
| +| [Brunsli](https://github.com/google/brunsli/) | 0.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowBrunsli is a lossless JPEG repacking library.
| +| [CFITSIO](https://heasarc.gsfc.nasa.gov/fitsio/) | 4.6.2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowCFITSIO is a library of C and Fortran subroutines for reading and writing data files in FITS (Flexible Image Transport System) data format.
| +| [CMake](https://www.cmake.org) | 3.31.3 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | devel |
ShowCMake, the cross-platform, open-source build system. CMake is a family of tools designed to build, test and package software.
| +| [CUDA](https://developer.nvidia.com/cuda-toolkit) | 12.6.0 | NVIDIA Tesla | iris | system |
ShowCUDA (formerly Compute Unified Device Architecture) is a parallel computing platform and programming model created by NVIDIA and implemented by the graphics processing units (GPUs) that they produce. CUDA gives developers access to the virtual instruction set and memory of the parallel computational elements in CUDA GPUs.
| +| [Catch2](https://github.com/catchorg/Catch2) | 2.13.10 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowA modern, C++-native, header-only, test framework for unit-tests, TDD and BDD - using C++11, C++14, C++17 and later
| +| [Cbc](https://github.com/coin-or/Cbc) | 2.10.12 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | math |
ShowCbc (Coin-or branch and cut) is an open-source mixed integer linear programming solver written in C++. It can be used as a callable library or using a stand-alone executable.
| +| [Cgl](https://github.com/coin-or/Cgl) | 0.60.9 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | math |
ShowThe COIN-OR Cut Generation Library (Cgl) is a collection of cut generators that can be used with other COIN-OR packages that make use of cuts, such as, among others, the linear solver Clp or the mixed integer linear programming solvers Cbc or BCP. Cgl uses the abstract class OsiSolverInterface (see Osi) to use or communicate with a solver. It does not directly call a solver.
| +| [Check](https://libcheck.github.io/check/) | 0.15.2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowCheck is a unit testing framework for C. It features a simple interface for defining unit tests, putting little in the way of the developer. Tests are run in a separate address space, so both assertion failures and code errors that cause segmentation faults or other signals can be caught. Test results are reportable in the following: Subunit, TAP, XML, and a generic logging format.
| +| [Clp](https://github.com/coin-or/Clp) | 1.17.10 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | math |
ShowClp (Coin-or linear programming) is an open-source linear programming solver. It is primarily meant to be used as a callable library, but a basic, stand-alone executable version is also available.
| +| [CoinUtils](https://github.com/coin-or/CoinUtils) | 2.11.12 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | math |
ShowCoinUtils (Coin-OR Utilities) is an open-source collection of classes and functions that are generally useful to more than one COIN-OR project.
| +| [CubeLib](https://www.scalasca.org/software/cube-4.x/download.html) | 4.9 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | perf |
ShowCube, which is used as performance report explorer for Scalasca and Score-P, is a generic tool for displaying a multi-dimensional performance space consisting of the dimensions (i) performance metric, (ii) call path, and (iii) system resource. Each dimension can be represented as a tree, where non-leaf nodes of the tree can be collapsed or expanded to achieve the desired level of granularity. This module provides the Cube general purpose C++ library component and command-line tools.
| +| [CubeWriter](https://www.scalasca.org/software/cube-4.x/download.html) | 4.9 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | perf |
ShowCube, which is used as performance report explorer for Scalasca and Score-P, is a generic tool for displaying a multi-dimensional performance space consisting of the dimensions (i) performance metric, (ii) call path, and (iii) system resource. Each dimension can be represented as a tree, where non-leaf nodes of the tree can be collapsed or expanded to achieve the desired level of granularity. This module provides the Cube high-performance C writer library component.
| +| [Cython](https://cython.org/) | 3.1.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lang |
ShowCython is an optimising static compiler for both the Python programming language and the extended Cython programming language (based on Pyrex).
| +| [DBus](https://dbus.freedesktop.org/) | 1.16.2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | devel |
ShowD-Bus is a message bus system, a simple way for applications to talk to one another. In addition to interprocess communication, D-Bus helps coordinate process lifecycle; it makes it simple and reliable to code a "single instance" application or daemon, and to launch applications and daemons on demand when their services are needed.
| +| [Doxygen](https://www.doxygen.nl) | 1.14.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | devel |
ShowDoxygen is a documentation system for C++, C, Java, Objective-C, Python, IDL (Corba and Microsoft flavors), Fortran, VHDL, PHP, C#, and to some extent D.
| +| [ELPA](https://elpa.mpcdf.mpg.de/) | 2025.01.002 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | math |
ShowEigenvalue SoLvers for Petaflop-Applications.
| +| [Eigen](https://eigen.tuxfamily.org) | 3.4.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | math |
ShowEigen is a C++ template library for linear algebra: matrices, vectors, numerical solvers, and related algorithms.
| +| [FFTW.MPI](https://www.fftw.org) | 3.3.10 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | numlib |
ShowFFTW is a C subroutine library for computing the discrete Fourier transform (DFT) in one or more dimensions, of arbitrary input size, and of both real and complex data.
| +| [FFTW](https://www.fftw.org) | 3.3.10 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | numlib |
ShowFFTW is a C subroutine library for computing the discrete Fourier transform (DFT) in one or more dimensions, of arbitrary input size, and of both real and complex data.
| +| [FFmpeg](https://www.ffmpeg.org/) | 7.1.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | vis |
ShowA complete, cross-platform solution to record, convert and stream audio and video.
| +| [FLAC](https://xiph.org/flac/) | 1.5.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowFLAC stands for Free Lossless Audio Codec, an audio format similar to MP3, but lossless, meaning that audio is compressed in FLAC without any loss in quality.
| +| [FLTK](https://www.fltk.org) | 1.4.4 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | vis |
ShowFLTK is a cross-platform C++ GUI toolkit for UNIX/Linux (X11), Microsoft Windows, and MacOS X. FLTK provides modern GUI functionality without the bloat and supports 3D graphics via OpenGL and its built-in GLUT emulation.
| +| [FlexiBLAS](https://gitlab.mpi-magdeburg.mpg.de/software/flexiblas-release) | 3.4.5 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowFlexiBLAS is a wrapper library that enables the exchange of the BLAS and LAPACK implementation used by a program without recompiling or relinking it.
| +| [FreeImage](http://freeimage.sourceforge.net) | 3.18.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | vis |
ShowFreeImage is an Open Source library project for developers who would like to support popular graphics image formats like PNG, BMP, JPEG, TIFF and others as needed by today's multimedia applications. FreeImage is easy to use, fast, multithreading safe.
| +| [FriBidi](https://github.com/fribidi/fribidi) | 1.0.16 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lang |
ShowThe Free Implementation of the Unicode Bidirectional Algorithm.
| +| [GCC](https://gcc.gnu.org/) | 14.2.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | compiler |
ShowThe GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,...).
| +| [GCCcore](https://gcc.gnu.org/) | 13.3.0 | NVIDIA Tesla | iris | compiler |
ShowThe GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,...).
| +| [GCCcore](https://gcc.gnu.org/) | 14.2.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | compiler |
ShowThe GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,...).
| +| [GDAL](https://www.gdal.org) | 3.11.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | data |
ShowGDAL is a translator library for raster geospatial data formats that is released under an X/MIT style Open Source license by the Open Source Geospatial Foundation. As a library, it presents a single abstract data model to the calling application for all supported formats. It also comes with a variety of useful commandline utilities for data translation and processing.
| +| [GDB](https://www.gnu.org/software/gdb/gdb.html) | 16.3 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | debugger |
ShowThe GNU Project Debugger
| +| [GEOS](https://trac.osgeo.org/geos) | 3.13.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | math |
ShowGEOS (Geometry Engine - Open Source) is a C++ port of the Java Topology Suite (JTS)
| +| [GLPK](https://www.gnu.org/software/glpk/) | 5.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
ShowThe GLPK (GNU Linear Programming Kit) package is intended for solving large-scale linear programming (LP), mixed integer programming (MIP), and other related problems. It is a set of routines written in ANSI C and organized in the form of a callable library.
| +| [GLib](https://www.gtk.org/) | 2.85.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | vis |
ShowGLib is one of the base libraries of the GTK+ project
| +| [GMP](https://gmplib.org/) | 6.3.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | math |
ShowGMP is a free library for arbitrary precision arithmetic, operating on signed integers, rational numbers, and floating point numbers.
| +| [GOTCHA](https://gotcha.readthedocs.io/en/latest/) | 1.0.8 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | devel |
ShowGotcha is a library that wraps functions. Tools can use gotcha to install hooks into other libraries, for example putting a wrapper function around libc's malloc. It is similar to LD_PRELOAD, but operates via a programmable API. This enables easy methods of accomplishing tasks like code instrumentation or wholesale replacement of mechanisms in programs without disrupting their source code.
| +| [GObject-Introspection](https://gi.readthedocs.io/en/latest/) | 1.84.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | devel |
ShowGObject introspection is a middleware layer between C libraries (using GObject) and language bindings. The C library can be scanned at compile time and generate a metadata file, in addition to the actual native C library. Then at runtime, language bindings can read this metadata and automatically provide bindings to call into the C library.
| +| [GROMACS](https://www.gromacs.org) | 2025.2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | bio |
ShowGROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles. This is a CPU only build, containing both MPI and threadMPI binaries for both single and double precision. It also contains the gmxapi extension for the single precision MPI build.
| +| [GSL](https://www.gnu.org/software/gsl/) | 2.8 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | numlib |
ShowThe GNU Scientific Library (GSL) is a numerical library for C and C++ programmers. The library provides a wide range of mathematical routines such as random number generators, special functions and least-squares fitting.
| +| [Gdk-Pixbuf](https://docs.gtk.org/gdk-pixbuf/) | 2.42.12 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | vis |
ShowThe Gdk Pixbuf is a toolkit for image loading and pixel buffer manipulation. It is used by GTK+ 2 and GTK+ 3 to load and manipulate images. In the past it was distributed as part of GTK+ 2 but it was split off into a separate package in preparation for the change to GTK+ 3.
| +| [Ghostscript](https://ghostscript.com) | 10.05.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
ShowGhostscript is a versatile processor for PostScript data with the ability to render PostScript to different targets. It used to be part of the cups printing stack, but is no longer used for that.
| +| [GitPython](https://gitpython.readthedocs.org) | 3.1.45 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowGitPython is a python library used to interact with Git repositories
| +| [Go](https://www.golang.org) | 1.25.3 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | compiler |
ShowGo is an open source programming language that makes it easy to build simple, reliable, and efficient software.
| +| [HDF5](https://portal.hdfgroup.org/display/support) | 1.14.6 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | data |
ShowHDF5 is a data model, library, and file format for storing and managing data. It supports an unlimited variety of datatypes, and is designed for flexible and efficient I/O and for high volume and complex data.
| +| [HDF](https://support.hdfgroup.org/products/hdf4/) | 4.3.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | data |
ShowHDF (also known as HDF4) is a library and multi-object file format for storing and managing data between machines.
| +| [HarfBuzz](https://www.freedesktop.org/wiki/Software/HarfBuzz) | 11.2.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | vis |
ShowHarfBuzz is an OpenType text shaping engine.
| +| [Hypre](https://computation.llnl.gov/projects/hypre-scalable-linear-solvers-multigrid-methods) | 2.33.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | numlib |
ShowHypre is a library for solving large, sparse linear systems of equations on massively parallel computers. The problems of interest arise in the simulation codes being developed at LLNL and elsewhere to study physical phenomena in the defense, environmental, energy, and biological sciences.
| +| [ICU](https://icu.unicode.org) | 76.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowICU is a mature, widely used set of C/C++ and Java libraries providing Unicode and Globalization support for software applications.
| +| [IPython](https://ipython.org/index.html) | 9.3.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
ShowIPython provides a rich architecture for interactive computing with: Powerful interactive shells (terminal and Qt-based). A browser-based notebook with support for code, text, mathematical expressions, inline plots and other rich media. Support for interactive data visualization and use of GUI toolkits. Flexible, embeddable interpreters to load into your own projects. Easy to use, high performance tools for parallel computing.
| +| [ISL](https://libisl.sourceforge.io) | 0.27 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | math |
Showisl is a library for manipulating sets and relations of integer points bounded by linear constraints.
| +| [ImageMagick](https://www.imagemagick.org/) | 7.1.1-47 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | vis |
ShowImageMagick is a software suite to create, edit, compose, or convert bitmap images
| +| [Imath](https://imath.readthedocs.io/en/latest/) | 3.1.12 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowImath is a C++ and python library of 2D and 3D vector, matrix, and math operations for computer graphics
| +| [JasPer](https://www.ece.uvic.ca/~frodo/jasper/) | 4.2.5 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | vis |
ShowThe JasPer Project is an open-source initiative to provide a free software-based reference implementation of the codec specified in the JPEG-2000 Part-1 standard.
| +| [Java](https://java.com/) | 21
25 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lang |
ShowJava Platform, Standard Edition (Java SE) lets you develop and deploy Java applications on desktops and servers.
| +| [Java](https://openjdk.org) | 21.0.8
25.36 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lang |
ShowJava Platform, Standard Edition (Java SE) lets you develop and deploy Java applications on desktops and servers.
| +| [LAME](http://lame.sourceforge.net/) | 3.100 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | data |
ShowLAME is a high quality MPEG Audio Layer III (MP3) encoder licensed under the LGPL.
| +| [LERC](https://github.com/Esri/lerc) | 4.0.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowLERC is an open-source image or raster format which supports rapid encoding and decoding for any pixel type (not just RGB or Byte). Users set the maximum compression error per pixel while encoding, so the precision of the original input image is preserved (within user defined error bounds).
| +| [LLVM](https://llvm.org/) | 20.1.7 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | compiler |
ShowThe LLVM Core libraries provide a modern source- and target-independent optimizer, along with code generation support for many popular CPUs (as well as some less common ones!) These libraries are built around a well specified code representation known as the LLVM intermediate representation ("LLVM IR"). The LLVM Core libraries are well documented, and it is particularly easy to invent your own language (or port an existing compiler) to use LLVM as an optimizer and code generator.
| +| [LibRaw](https://www.libraw.org/) | 0.21.4 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | vis |
ShowThe LibRaw library provides a simple and unified interface for extracting out of RAW files generated by digital photo cameras the following: - RAW data (pixel values) - Metadata necessary for processing RAW (geometry, CFA / Bayer pattern, black level, white balance, etc.) - Embedded preview / thumbnail.
| +| [LibTIFF](https://libtiff.gitlab.io/libtiff/) | 4.7.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
Showtiff: Library and tools for reading and writing TIFF data files
| +| [LittleCMS](https://www.littlecms.com/) | 2.17 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | vis |
ShowLittle CMS intends to be an OPEN SOURCE small-footprint color management engine, with special focus on accuracy and performance.
| +| [Lua](https://www.lua.org/) | 5.4.8 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lang |
ShowLua is a powerful, fast, lightweight, embeddable scripting language. Lua combines simple procedural syntax with powerful data description constructs based on associative arrays and extensible semantics. Lua is dynamically typed, runs by interpreting bytecode for a register-based virtual machine, and has automatic memory management with incremental garbage collection, making it ideal for configuration, scripting, and rapid prototyping.
| +| [M4](https://www.gnu.org/software/m4/m4.html) | 1.4.19 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | devel |
ShowGNU M4 is an implementation of the traditional Unix macro processor. It is mostly SVR4 compatible although it has some extensions (for example, handling more than 9 positional parameters to macros). GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, etc.
| +| [METIS](https://karypis.github.io/glaros/projects/gp.html) | 5.1.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | math |
ShowMETIS is a set of serial programs for partitioning graphs, partitioning finite element meshes, and producing fill reducing orderings for sparse matrices. The algorithms implemented in METIS are based on the multilevel recursive-bisection, multilevel k-way, and multi-constraint partitioning schemes.
| +| [MPC](http://www.multiprecision.org/) | 1.3.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | math |
ShowGnu Mpc is a C library for the arithmetic of complex numbers with arbitrarily high precision and correct rounding of the result. It extends the principles of the IEEE-754 standard for fixed precision real floating point numbers to complex numbers, providing well-defined semantics for every operation. At the same time, speed of operation at high precision is a major design goal.
| +| [MPFR](https://www.mpfr.org) | 4.2.2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | math |
ShowThe MPFR library is a C library for multiple-precision floating-point computations with correct rounding.
| +| [MUMPS](https://mumps-solver.org) | 5.8.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | math |
ShowA parallel sparse direct solver
| +| [Mako](https://www.makotemplates.org) | 1.3.10 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | devel |
ShowA super-fast templating language that borrows the best ideas from the existing templating languages
| +| [Mesa](https://www.mesa3d.org/) | 25.1.3 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | vis |
ShowMesa is an open-source implementation of the OpenGL specification - a system for rendering interactive 3D graphics.
| +| [Meson](https://mesonbuild.com) | 1.6.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
ShowMeson is a cross-platform build system designed to be both as fast and as user friendly as possible.
| +| [NASM](https://www.nasm.us/) | 2.16.03 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lang |
ShowNASM: General-purpose x86 assembler
| +| [NLopt](https://nlopt.readthedocs.io/en/latest/) | 2.10.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | numlib |
ShowNLopt is a free/open-source library for nonlinear optimization, providing a common interface for a number of different free optimization routines available online as well as original implementations of various other algorithms.
| +| [NSPR](https://developer.mozilla.org/en-US/docs/Mozilla/Projects/NSPR) | 4.36 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowNetscape Portable Runtime (NSPR) provides a platform-neutral API for system level and libc-like functions.
| +| [NSS](https://developer.mozilla.org/en-US/docs/Mozilla/Projects/NSS) | 3.113 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowNetwork Security Services (NSS) is a set of libraries designed to support cross-platform development of security-enabled client and server applications.
| +| [NVHPC](https://developer.nvidia.com/hpc-sdk/) | 25.1 | NVIDIA Tesla | iris | toolchain |
ShowComplete toolchain based on NVIDIA HPC SDK. Includes C, C++ and FORTRAN compilers (nvidia-compilers), an MPI implementation based on OpenMPI (NVHPCX) and math libraries based on OpenBLAS and ScaLAPACK.
| +| [Nextflow](https://www.nextflow.io/) | 25.10.2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
ShowNextflow is a reactive workflow framework and a programming DSL that eases writing computational pipelines with complex data
| +| [Ninja](https://ninja-build.org/) | 1.12.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
ShowNinja is a small build system with a focus on speed.
| +| [OPARI2](https://www.score-p.org) | 2.0.9 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | perf |
ShowOPARI2, the successor of Forschungszentrum Juelich's OPARI, is a source-to-source instrumentation tool for OpenMP and hybrid codes. It surrounds OpenMP directives and runtime library calls with calls to the POMP2 measurement interface.
| +| [OSPRay](https://www.ospray.org) | 2.12.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | vis |
ShowOpen, Scalable, and Portable Ray Tracing Engine
| +| [OSU-Micro-Benchmarks](https://mvapich.cse.ohio-state.edu/benchmarks/) | 7.5 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | perf |
ShowOSU Micro-Benchmarks
| +| [OTF2](https://www.score-p.org) | 3.1.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | perf |
ShowThe Open Trace Format 2 is a highly scalable, memory efficient event trace data format plus support library. It is the new standard trace format for Scalasca, Vampir, and TAU and is open for other tools.
| +| [OpenBLAS](https://www.openblas.net/) | 0.3.29 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | numlib |
ShowOpenBLAS is an optimized BLAS library based on GotoBLAS2 1.13 BSD version.
| +| [OpenEXR](https://www.openexr.com/) | 3.3.4 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | vis |
ShowOpenEXR is a high dynamic-range (HDR) image file format developed by Industrial Light & Magic for use in computer imaging applications
| +| [OpenJPEG](https://www.openjpeg.org/) | 2.5.3 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowOpenJPEG is an open-source JPEG 2000 codec written in C language. It has been developed in order to promote the use of JPEG 2000, a still-image compression standard from the Joint Photographic Experts Group (JPEG). Since may 2015, it is officially recognized by ISO/IEC and ITU-T as a JPEG 2000 Reference Software.
| +| [OpenMPI](https://www.open-mpi.org/) | 5.0.7 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | mpi |
ShowThe Open MPI Project is an open source MPI-3 implementation.
| +| [OpenPGM](https://code.google.com/p/openpgm/) | 5.2.122 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | system |
ShowOpenPGM is an open source implementation of the Pragmatic General Multicast (PGM) specification in RFC 3208 available at www.ietf.org. PGM is a reliable and scalable multicast protocol that enables receivers to detect loss, request retransmission of lost data, or notify an application of unrecoverable loss. PGM is a receiver-reliable protocol, which means the receiver is responsible for ensuring all data is received, absolving the sender of reception responsibility.
| +| [OpenSSL](https://www.openssl.org/) | 3 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | system |
ShowThe OpenSSL Project is a collaborative effort to develop a robust, commercial-grade, full-featured, and Open Source toolchain implementing the Secure Sockets Layer (SSL v2/v3) and Transport Layer Security (TLS v1) protocols as well as a full-strength general purpose cryptography library.
| +| [Osi](https://github.com/coin-or/Osi) | 0.108.11 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | math |
ShowOsi (Open Solver Interface) provides an abstract base class to a generic linear programming (LP) solver, along with derived classes for specific solvers. Many applications may be able to use the Osi to insulate themselves from a specific LP solver. That is, programs written to the OSI standard may be linked to any solver with an OSI interface and should produce correct results. The OSI has been significantly extended compared to its first incarnation. Currently, the OSI supports linear programming solvers and has rudimentary support for integer programming.
| +| [PCRE2](https://www.pcre.org/) | 10.45 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | devel |
ShowThe PCRE library is a set of functions that implement regular expression pattern matching using the same syntax and semantics as Perl 5.
| +| [PCRE](https://www.pcre.org/) | 8.45 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | devel |
ShowThe PCRE library is a set of functions that implement regular expression pattern matching using the same syntax and semantics as Perl 5.
| +| [PETSc](https://www.mcs.anl.gov/petsc) | 3.23.5 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | numlib |
ShowPETSc, pronounced PET-see (the S is silent), is a suite of data structures and routines for the scalable (parallel) solution of scientific applications modeled by partial differential equations.
| +| [PLUMED](https://www.plumed.org) | 2.9.4 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | chem |
ShowPLUMED is an open source library for free energy calculations in molecular systems which works together with some of the most popular molecular dynamics engines. Free energy calculations can be performed as a function of many order parameters with a particular focus on biological problems, using state of the art methods such as metadynamics, umbrella sampling and Jarzynski-equation based steered MD. The software, written in C++, can be easily interfaced with both fortran and C/C++ codes.
| +| [PMIx](https://pmix.org/) | 5.0.6 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowProcess Management for Exascale Environments PMI Exascale (PMIx) represents an attempt to provide an extended version of the PMI standard specifically designed to support clusters up to and including exascale sizes. The overall objective of the project is not to branch the existing pseudo-standard definitions - in fact, PMIx fully supports both of the existing PMI-1 and PMI-2 APIs - but rather to (a) augment and extend those APIs to eliminate some current restrictions that impact scalability, and (b) provide a reference implementation of the PMI-server that demonstrates the desired level of scalability.
| +| [PROJ](https://proj.org) | 9.6.2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowProgram proj is a standard Unix filter function which converts geographic longitude and latitude coordinates into cartesian coordinates
| +| [PRRTE](https://docs.prrte.org/) | 3.0.8 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowPRRTE is the PMIx Reference RunTime Environment
| +| [Pango](https://www.pango.org/) | 1.56.3 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | vis |
ShowPango is a library for laying out and rendering of text, with an emphasis on internationalization. Pango can be used anywhere that text layout is needed, though most of the work on Pango so far has been done in the context of the GTK+ widget toolkit. Pango forms the core of text and font handling for GTK+-2.x.
| +| [ParMETIS](https://karypis.github.io/glaros/projects/gp.html) | 4.0.3 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | math |
ShowParMETIS is an MPI-based parallel library that implements a variety of algorithms for partitioning unstructured graphs, meshes, and for computing fill-reducing orderings of sparse matrices. ParMETIS extends the functionality provided by METIS and includes routines that are especially suited for parallel AMR computations and large scale numerical simulations. The algorithms implemented in ParMETIS are based on the parallel multilevel k-way graph-partitioning, adaptive repartitioning, and parallel multi-constrained partitioning schemes.
| +| [ParaView](https://www.paraview.org) | 6.0.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | vis |
ShowParaView is a scientific parallel visualizer.
| +| [Perl-bundle-CPAN](https://www.perl.org/) | 5.40.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lang |
ShowA set of common packages from CPAN
| +| [Perl](https://www.perl.org/) | 5.38.0
5.40.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lang |
ShowLarry Wall's Practical Extraction and Report Language Includes a small selection of extra CPAN packages for core functionality.
| +| [Perl](https://www.perl.org/) | 5.38.2 | NVIDIA Tesla | iris | lang |
ShowLarry Wall's Practical Extraction and Report Language Includes a small selection of extra CPAN packages for core functionality.
| +| [Pillow](https://pillow.readthedocs.org/) | 11.3.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | vis |
ShowPillow is the 'friendly PIL fork' by Alex Clark and Contributors. PIL is the Python Imaging Library by Fredrik Lundh and Contributors.
| +| [PostgreSQL](https://www.postgresql.org/) | 17.5 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | data |
ShowPostgreSQL is a powerful, open source object-relational database system. It is fully ACID compliant, has full support for foreign keys, joins, views, triggers, and stored procedures (in multiple languages). It includes most SQL:2008 data types, including INTEGER, NUMERIC, BOOLEAN, CHAR, VARCHAR, DATE, INTERVAL, and TIMESTAMP. It also supports storage of binary large objects, including pictures, sounds, or video. It has native programming interfaces for C/C++, Java, .Net, Perl, Python, Ruby, Tcl, ODBC, among others, and exceptional documentation.
| +| [PuLP](https://github.com/coin-or/pulp) | 3.3.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
ShowPuLP is an LP modeler written in Python. PuLP can generate MPS or LP files and call GLPK, COIN-OR CLP/CBC, CPLEX, GUROBI, MOSEK, XPRESS, CHOCO, MIPCL, SCIP to solve linear problems.
| +| [PyYAML](https://github.com/yaml/pyyaml) | 6.0.2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowPyYAML is a YAML parser and emitter for the Python programming language.
| +| [Python-bundle-PyPI](https://python.org/) | 2025.04 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lang |
ShowBundle of Python packages from PyPI
| +| [Python](https://python.org/) | 3.13.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lang |
ShowPython is a programming language that lets you work more quickly and integrate your systems more effectively.
| +| [Qhull](http://www.qhull.org) | 2020.2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | math |
ShowQhull computes the convex hull, Delaunay triangulation, Voronoi diagram, halfspace intersection about a point, furthest-site Delaunay triangulation, and furthest-site Voronoi diagram. The source code runs in 2-d, 3-d, 4-d, and higher dimensions. Qhull implements the Quickhull algorithm for computing the convex hull.
| +| [Qt6](https://qt.io/) | 6.9.3 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | devel |
ShowQt is a comprehensive cross-platform C++ application framework.
| +| [QuantumESPRESSO](https://www.quantum-espresso.org) | 7.5 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | chem |
ShowQuantum ESPRESSO is an integrated suite of computer codes for electronic-structure calculations and materials modeling at the nanoscale. It is based on density-functional theory, plane waves, and pseudopotentials (both norm-conserving and ultrasoft).
| +| [R-bundle-Bioconductor](https://bioconductor.org) | 3.22 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | bio |
ShowBioconductor provides tools for the analysis and coprehension of high-throughput genomic data.
| +| [R-bundle-CRAN](https://www.r-project.org/) | 2025.10 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lang |
ShowBundle of R packages from CRAN
| +| [RE2](https://github.com/google/re2) | 2024-07-02 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowRE2 is a fast, safe, thread-friendly alternative to backtracking regular expression engines like those used in PCRE, Perl, and Python. It is a C++ library.
| +| [R](https://www.r-project.org/) | 4.5.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lang |
ShowR is a free software environment for statistical computing and graphics.
| +| [RapidJSON](https://rapidjson.org) | 1.1.0-20250205 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowA fast JSON parser/generator for C++ with both SAX/DOM style API
| +| [ReFrame](https://github.com/reframe-hpc/reframe) | 4.8.4 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | devel |
ShowReFrame is a framework for writing regression tests for HPC systems.
| +| [Rust](https://www.rust-lang.org) | 1.85.1
1.91.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lang |
ShowRust is a systems programming language that runs blazingly fast, prevents segfaults, and guarantees thread safety.
| +| [SCOTCH](https://www.labri.fr/perso/pelegrin/scotch/) | 7.0.8 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | math |
ShowSoftware package and libraries for sequential and parallel graph partitioning, static mapping, and sparse matrix block ordering, and sequential mesh and hypergraph partitioning.
| +| [SDL2](https://www.libsdl.org/) | 2.32.8 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowSDL: Simple DirectMedia Layer, a cross-platform multimedia library
| +| [SIONlib](https://www.fz-juelich.de/ias/jsc/EN/Expertise/Support/Software/SIONlib/_node.html) | 1.7.7 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowSIONlib is a scalable I/O library for parallel access to task-local files. The library not only supports writing and reading binary data to or from several thousands of processors into a single or a small number of physical files, but also provides global open and close functions to access SIONlib files in parallel. This package provides a stripped-down installation of SIONlib for use with performance tools (e.g., Score-P), with renamed symbols to avoid conflicts when an application using SIONlib itself is linked against a tool requiring a different SIONlib version.
| +| [SLEPc](https://slepc.upv.es) | 3.23.3 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | numlib |
ShowSLEPc (Scalable Library for Eigenvalue Problem Computations) is a software library for the solution of large scale sparse eigenvalue problems on parallel computers. It is an extension of PETSc and can be used for either standard or generalized eigenproblems, with real or complex arithmetic. It can also be used for computing a partial SVD of a large, sparse, rectangular matrix, and to solve quadratic eigenvalue problems.
| +| [SQLite](https://www.sqlite.org/) | 3.47.2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | devel |
ShowSQLite: SQL Database Engine in a C Library
| +| [SWIG](http://www.swig.org/) | 4.3.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | devel |
ShowSWIG is a software development tool that connects programs written in C and C++ with a variety of high-level programming languages.
| +| [ScaLAPACK](https://www.netlib.org/scalapack/) | 2.2.2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | numlib |
ShowThe ScaLAPACK (or Scalable LAPACK) library includes a subset of LAPACK routines redesigned for distributed memory MIMD parallel computers.
| +| [Scalasca](https://www.scalasca.org/) | 2.6.2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | perf |
ShowScalasca is a software tool that supports the performance optimization of parallel programs by measuring and analyzing their runtime behavior. The analysis identifies potential performance bottlenecks -- in particular those concerning communication and synchronization -- and offers guidance in exploring their causes.
| +| [SciPy-bundle](https://python.org/) | 2025.06 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lang |
ShowBundle of Python packages for scientific software
| +| [Score-P](https://www.score-p.org) | 9.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | perf |
ShowThe Score-P measurement infrastructure is a highly scalable and easy-to-use tool suite for profiling, event tracing, and online analysis of HPC applications.
| +| [Spack](https://spack.io/) | 1.1.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | devel |
ShowSpack is a package manager for supercomputers, Linux, and macOS. It makes installing scientific software easy. With Spack, you can build a package with multiple versions, configurations, platforms, and compilers, and all of these builds can coexist on the same machine.
| +| [SuiteSparse](https://faculty.cse.tamu.edu/davis/suitesparse.html) | 7.10.3 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | numlib |
ShowSuiteSparse is a collection of libraries to manipulate sparse matrices.
| +| [SuperLU_DIST](https://crd-legacy.lbl.gov/~xiaoye/SuperLU/) | 9.1.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | numlib |
ShowSuperLU is a general purpose library for the direct solution of large, sparse, nonsymmetric systems of linear equations on high performance machines.
| +| [Szip](https://docs.hdfgroup.org/archive/support/doc_resource/SZIP/index.html) | 2.1.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
ShowSzip compression software, providing lossless compression of scientific data
| +| [Tcl](https://www.tcl.tk/) | 8.6.16 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lang |
ShowTcl (Tool Command Language) is a very powerful but easy to learn dynamic programming language, suitable for a very wide range of uses, including web and desktop applications, networking, administration, testing and many more.
| +| [Tk](https://www.tcl.tk/) | 8.6.16 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | vis |
ShowTk is an open source, cross-platform widget toolchain that provides a library of basic elements for building a graphical user interface (GUI) in many different programming languages.
| +| [Tkinter](https://python.org/) | 3.13.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lang |
ShowTkinter module, built with the Python buildsystem
| +| [UCC](https://www.openucx.org/) | 1.3.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowUCC (Unified Collective Communication) is a collective communication operations API and library that is flexible, complete, and feature-rich for current and emerging programming models and runtimes.
| +| [UCX](https://www.openucx.org/) | 1.18.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowUnified Communication X An open-source production grade communication framework for data centric and high-performance applications
| +| [UDUNITS](https://www.unidata.ucar.edu/software/udunits/) | 2.2.28 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | phys |
ShowUDUNITS supports conversion of unit specifications between formatted and binary forms, arithmetic manipulation of units, and conversion of values between compatible scales of measurement.
| +| [UnZip](http://www.info-zip.org/UnZip.html) | 6.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
ShowUnZip is an extraction utility for archives compressed in .zip format (also called "zipfiles"). Although highly compatible both with PKWARE's PKZIP and PKUNZIP utilities for MS-DOS and with Info-ZIP's own Zip program, our primary objectives have been portability and non-MSDOS functionality.
| +| [Valgrind](https://valgrind.org) | 3.25.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | debugger |
ShowValgrind: Debugging and profiling tools
| +| [Wayland](https://wayland.freedesktop.org/) | 1.23.92 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | vis |
ShowWayland is a project to define a protocol for a compositor to talk to its clients as well as a library implementation of the protocol. The compositor can be a standalone display server running on Linux kernel modesetting and evdev input devices, an X application, or a wayland client itself. The clients can be traditional applications, X servers (rootless or fullscreen) or other display servers.
| +| [X11](https://www.x.org) | 20250521 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | vis |
ShowThe X Window System (X11) is a windowing system for bitmap displays
| +| [XZ](https://tukaani.org/xz/) | 5.6.3 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
Showxz: XZ utilities
| +| [Xerces-C++](https://xerces.apache.org/xerces-c/) | 3.3.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowXerces-C++ is a validating XML parser written in a portable subset of C++. Xerces-C++ makes it easy to give your application the ability to read and write XML data. A shared library is provided for parsing, generating, manipulating, and validating XML documents using the DOM, SAX, and SAX2 APIs.
| +| [Xvfb](https://www.x.org/releases/X11R7.6/doc/man/man1/Xvfb.1.xhtml) | 21.1.18 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | vis |
ShowXvfb is an X server that can run on machines with no display hardware and no physical input devices. It emulates a dumb framebuffer using virtual memory.
| +| [Yasm](https://www.tortall.net/projects/yasm/) | 1.3.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lang |
ShowYasm: Complete rewrite of the NASM assembler with BSD license
| +| [Z3](https://github.com/Z3Prover/z3) | 4.13.4 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
ShowZ3 is a theorem prover from Microsoft Research with support for bitvectors, booleans, arrays, floating point numbers, strings, and other data types. This module includes z3-solver, the Python interface of Z3.
| +| [ZeroMQ](https://www.zeromq.org/) | 4.3.5 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | devel |
ShowZeroMQ looks like an embeddable networking library but acts like a concurrency framework. It gives you sockets that carry atomic messages across various transports like in-process, inter-process, TCP, and multicast. You can connect sockets N-to-N with patterns like fanout, pub-sub, task distribution, and request-reply. It's fast enough to be the fabric for clustered products. Its asynchronous I/O model gives you scalable multicore applications, built as asynchronous message-processing tasks. It has a score of language APIs and runs on most operating systems.
| +| [arpack-ng](https://github.com/opencollab/arpack-ng) | 3.9.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | numlib |
ShowARPACK is a collection of Fortran77 subroutines designed to solve large scale eigenvalue problems.
| +| [arrow-R](https://cran.r-project.org/web/packages/arrow) | 22.0.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
ShowR interface to the Apache Arrow C++ library
| +| [assimp](https://github.com/assimp/assimp) | 6.0.2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | vis |
ShowOpen Asset Import Library (assimp) is a library to import and export various 3d-model-formats including scene-post-processing to generate missing render data.
| +| [binutils](https://directory.fsf.org/project/binutils/) | 2.40
2.42 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
Showbinutils: GNU binary utilities
| +| [binutils](https://directory.fsf.org/project/binutils/) | 2.42 | NVIDIA Tesla | iris | tools |
Showbinutils: GNU binary utilities
| +| [build](https://github.com/pypa/build) | 1.3.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | devel |
ShowA simple, correct Python build frontend.
| +| [bzip2](https://sourceware.org/bzip2) | 1.0.8 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
Showbzip2 is a freely available, patent free, high-quality data compressor. It typically compresses files to within 10% to 15% of the best available techniques (the PPM family of statistical compressors), whilst being around twice as fast at compression and six times faster at decompression.
| +| [cURL](https://curl.haxx.se) | 8.11.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
Showlibcurl is a free and easy-to-use client-side URL transfer library, supporting DICT, FILE, FTP, FTPS, Gopher, HTTP, HTTPS, IMAP, IMAPS, LDAP, LDAPS, POP3, POP3S, RTMP, RTSP, SCP, SFTP, SMTP, SMTPS, Telnet and TFTP. libcurl supports SSL certificates, HTTP POST, HTTP PUT, FTP uploading, HTTP form based upload, proxies, cookies, user+password authentication (Basic, Digest, NTLM, Negotiate, Kerberos), file transfer resume, http proxy tunneling and more.
| +| [cairo](https://cairographics.org) | 1.18.4 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | vis |
ShowCairo is a 2D graphics library with support for multiple output devices. Currently supported output targets include the X Window System (via both Xlib and XCB), Quartz, Win32, image buffers, PostScript, PDF, and SVG file output. Experimental backends include OpenGL, BeOS, OS/2, and DirectFB
| +| [cffi](https://cffi.readthedocs.io/en/latest/) | 1.17.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
ShowC Foreign Function Interface for Python. Interact with almost any C code from Python, based on C-like declarations that you can often copy-paste from header files or documentation.
| +| [cppy](https://github.com/nucleic/cppy) | 1.3.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
ShowA small C++ header library which makes it easier to write Python extension modules. The primary feature is a PyObject smart pointer which automatically handles reference counting and provides convenience methods for performing common object operations.
| +| [cryptography](https://github.com/pyca/cryptography) | 44.0.2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
Showcryptography is a package designed to expose cryptographic primitives and recipes to Python developers.
| +| [double-conversion](https://github.com/google/double-conversion) | 3.3.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowEfficient binary-decimal and decimal-binary conversion routines for IEEE doubles.
| +| [expat](https://libexpat.github.io) | 2.6.4 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
ShowExpat is an XML parser library written in C. It is a stream-oriented parser in which an application registers handlers for things the parser might find in the XML document (like start tags).
| +| [ffnvcodec](https://git.videolan.org/?p=ffmpeg/nv-codec-headers.git) | 13.0.19.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowFFmpeg nvidia headers. Adds support for nvenc and nvdec. Requires Nvidia GPU and drivers to be present (picked up dynamically).
| +| [flex](http://flex.sourceforge.net/) | 2.6.4 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lang |
ShowFlex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner, sometimes called a tokenizer, is a program which recognizes lexical patterns in text.
| +| [flex](https://github.com/westes/flex) | 2.6.4 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | lang |
ShowFlex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner, sometimes called a tokenizer, is a program which recognizes lexical patterns in text.
| +| [flit](https://github.com/pypa/flit) | 3.10.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
ShowA simple packaging tool for simple packages.
| +| [fontconfig](https://www.freedesktop.org/wiki/Software/fontconfig/) | 2.16.2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | vis |
ShowFontconfig is a library designed to provide system-wide font configuration, customization and application access.
| +| [fonttools](https://python-markdown.github.io/) | 4.58.4 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | devel |
ShowfontTools is a library for manipulating fonts, written in Python. The project includes the TTX tool, that can convert TrueType and OpenType fonts to and from an XML text format, which is also called TTX. It supports TrueType, OpenType, AFM and to an extent Type 1 and some Mac-specific formats.
| +| [foss](https://docs.easybuild.io/common-toolchains/#common_toolchains_foss) | 2025a | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | toolchain |
ShowGNU Compiler Collection (GCC) based compiler toolchain, including OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK.
| +| [freetype](https://www.freetype.org) | 2.13.3 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | vis |
ShowFreeType 2 is a software font engine that is designed to be small, efficient, highly customizable, and portable while capable of producing high-quality output (glyph images). It can be used in graphics libraries, display servers, font conversion tools, text image generation tools, and many other products as well.
| +| [gettext](https://www.gnu.org/software/gettext/) | 0.22.5
0.24 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
ShowGNU 'gettext' is an important step for the GNU Translation Project, as it is an asset on which we may build many other steps. This package offers to programmers, translators, and even users, a well integrated set of tools and documentation
| +| [gfbf]((none)) | 2025a | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | toolchain |
ShowGNU Compiler Collection (GCC) based compiler toolchain, including FlexiBLAS (BLAS and LAPACK support) and (serial) FFTW.
| +| [giflib](http://giflib.sourceforge.net/) | 5.2.2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
Showgiflib is a library for reading and writing gif images. It is API and ABI compatible with libungif which was in wide use while the LZW compression algorithm was patented.
| +| [git](https://git-scm.com) | 2.49.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
ShowGit is a free and open source distributed version control system designed to handle everything from small to very large projects with speed and efficiency.
| +| [glslang-SPIRV](https://www.khronos.org/opengles/sdk/tools/Reference-Compiler/) | 15.3.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | compiler |
ShowGlslang is the official reference compiler front end for the OpenGL ES and OpenGL shading languages. It implements a strict interpretation of the specifications for these languages. It is open and free for anyone to use, either from a command line or programmatically. The OpenGL and OpenGL ES working groups are committed to maintaining consistency between the reference compiler and the corresponding shading language specifications.
| +| [gmsh](https://gmsh.info/) | 4.15.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | math |
ShowGmsh is a 3D finite element grid generator with a build-in CAD engine and post-processor.
| +| [gnuplot](http://gnuplot.sourceforge.net) | 6.0.3 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | vis |
ShowPortable interactive, function plotting utility
| +| [gompi]((none)) | 2025a | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | toolchain |
ShowGNU Compiler Collection (GCC) based compiler toolchain, including OpenMPI for MPI support.
| +| [googlebenchmark](https://github.com/google/benchmark) | 1.9.4 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
ShowGoogle's framework for writing C++ tests on a variety of platforms
| +| [googletest](https://github.com/google/googletest) | 1.17.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
ShowGoogle's framework for writing C++ tests on a variety of platforms
| +| [gperf](https://www.gnu.org/software/gperf/) | 3.3 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | devel |
ShowGNU gperf is a perfect hash function generator. For a given list of strings, it produces a hash function and hash table, in form of C or C++ code, for looking up a value depending on the input string. The hash function is perfect, which means that the hash table has no collisions, and the hash table lookup needs a single string comparison only.
| +| [graphite2](https://scripts.sil.org/cms/scripts/page.php?site_id=projects&item_id=graphite_home) | 1.3.14 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowGraphite is a "smart font" system developed specifically to handle the complexities of lesser-known languages of the world.
| +| [groff](https://www.gnu.org/software/groff) | 1.23.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
ShowGroff (GNU troff) is a typesetting system that reads plain text mixed with formatting commands and produces formatted output.
| +| [gzip](https://www.gnu.org/software/gzip/) | 1.13 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
Showgzip (GNU zip) is a popular data compression program as a replacement for compress
| +| [h5py](https://www.h5py.org/) | 3.14.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | data |
ShowHDF5 for Python (h5py) is a general-purpose Python interface to the Hierarchical Data Format library, version 5. HDF5 is a versatile, mature scientific software library designed for the fast, flexible storage of enormous amounts of data.
| +| [hatchling](https://hatch.pypa.io) | 1.27.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
ShowExtensible, standards compliant build backend used by Hatch, a modern, extensible Python project manager.
| +| [help2man](https://www.gnu.org/software/help2man/) | 1.49.3 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | tools |
Showhelp2man produces simple manual pages from the '--help' and '--version' output of other commands.
| +| [hwloc](https://www.open-mpi.org/projects/hwloc/) | 2.11.2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | system |
ShowThe Portable Hardware Locality (hwloc) software package provides a portable abstraction (across OS, versions, architectures, ...) of the hierarchical topology of modern architectures, including NUMA memory nodes, sockets, shared caches, cores and simultaneous multithreading. It also gathers various system attributes such as cache and memory information as well as the locality of I/O devices such as network interfaces, InfiniBand HCAs or GPUs. It primarily aims at helping applications with gathering information about modern computing hardware so as to exploit it accordingly and efficiently.
| +| [hypothesis](https://github.com/HypothesisWorks/hypothesis) | 6.133.2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
ShowHypothesis is an advanced testing library for Python. It lets you write tests which are parametrized by a source of examples, and then generates simple and comprehensible examples that make your tests fail. This lets you find more bugs in your code with less work.
| +| [iimpi](https://software.intel.com/parallel-studio-xe) | 2025a | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | toolchain |
ShowIntel C/C++ and Fortran compilers, alongside Intel MPI.
| +| [imkl-FFTW](https://software.intel.com/content/www/us/en/develop/tools/oneapi/components/onemkl.html) | 2025.1.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | numlib |
ShowFFTW interfaces using Intel oneAPI Math Kernel Library
| +| [imkl](https://software.intel.com/content/www/us/en/develop/tools/oneapi/components/onemkl.html) | 2025.1.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | numlib |
ShowIntel oneAPI Math Kernel Library
| +| [impi](https://software.intel.com/content/www/us/en/develop/tools/mpi-library.html) | 2021.15.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | mpi |
ShowIntel MPI Library, compatible with MPICH ABI
| +| [intel-compilers](https://software.intel.com/content/www/us/en/develop/tools/oneapi/hpc-toolkit.html) | 2025.1.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | compiler |
ShowIntel C, C++ & Fortran compilers
| +| [intel](https://docs.easybuild.io/common-toolchains/#common_toolchains_overview_intel) | 2025a | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | toolchain |
ShowCompiler toolchain including Intel compilers, Intel MPI and Intel Math Kernel Library (MKL).
| +| [intltool](https://freedesktop.org/wiki/Software/intltool/) | 0.51.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | devel |
Showintltool is a set of tools to centralize translation of many different file formats using GNU gettext-compatible PO files.
| +| [jbigkit](https://www.cl.cam.ac.uk/~mgk25/jbigkit/) | 2.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | vis |
ShowJBIG-KIT is a software implementation of the JBIG1 data compression standard (ITU-T T.82), which was designed for bi-level image data, such as scanned documents.
| +| [jedi](https://github.com/davidhalter/jedi) | 0.19.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
ShowJedi - an awesome autocompletion, static analysis and refactoring library for Python.
| +| [json-c](https://github.com/json-c/json-c) | 0.18 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowJSON-C implements a reference counting object model that allows you to easily construct JSON objects in C, output them as JSON formatted strings and parse JSON formatted strings back into the C representation of JSON objects.
| +| [jxrlib](https://github.com/4creators/jxrlib) | 2019.10.9 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowOpen source implementation of jpegxr
| +| [libGLU](https://gitlab.freedesktop.org/mesa/glu) | 9.0.3 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | vis |
ShowThe OpenGL Utility Library (GLU) is a computer graphics library for OpenGL.
| +| [libarchive](https://www.libarchive.org/) | 3.7.7 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
ShowMulti-format archive and compression library
| +| [libcerf](https://jugit.fz-juelich.de/mlz/libcerf) | 3.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | math |
Showlibcerf is a self-contained numeric library that provides an efficient and accurate implementation of complex error functions, along with Dawson, Faddeeva, and Voigt functions.
| +| [libde265](https://github.com/strukturag/libde265) | 1.0.16 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
Showlibde265 is an open source implementation of the h.265 video codec
| +| [libdeflate](https://github.com/ebiggers/libdeflate) | 1.24 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | system |
ShowHeavily optimized library for DEFLATE/zlib/gzip compression and decompression.
| +| [libdrm](https://dri.freedesktop.org) | 2.4.125 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowDirect Rendering Manager runtime library.
| +| [libevent](https://libevent.org/) | 2.1.12 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowThe libevent API provides a mechanism to execute a callback function when a specific event occurs on a file descriptor or after a timeout has been reached. Furthermore, libevent also support callbacks due to signals or regular timeouts.
| +| [libfabric](https://ofiwg.github.io/libfabric/) | 2.0.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowLibfabric is a core component of OFI. It is the library that defines and exports the user-space API of OFI, and is typically the only software that applications deal with directly. It works in conjunction with provider libraries, which are often integrated directly into libfabric.
| +| [libffi](https://sourceware.org/libffi/) | 3.4.5 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowThe libffi library provides a portable, high level programming interface to various calling conventions. This allows a programmer to call any function specified by a call interface description at run-time.
| +| [libgd](https://libgd.github.io) | 2.3.3 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowGD is an open source code library for the dynamic creation of images by programmers.
| +| [libgeotiff](https://trac.osgeo.org/geotiff/wiki/WikiStart) | 1.7.4 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowLibrary for reading and writing coordinate system information from/to GeoTIFF files
| +| [libgit2](https://libgit2.org/) | 1.9.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | devel |
Showlibgit2 is a portable, pure C implementation of the Git core methods provided as a re-entrant linkable library with a solid API, allowing you to write native speed custom Git applications in any language which supports C bindings.
| +| [libglvnd](https://gitlab.freedesktop.org/glvnd/libglvnd) | 1.7.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
Showlibglvnd is a vendor-neutral dispatch layer for arbitrating OpenGL API calls between multiple vendors.
| +| [libheif](https://github.com/strukturag/libheif) | 1.19.8 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
Showlibheif is an HEIF and AVIF file format decoder and encoder
| +| [libiconv](https://www.gnu.org/software/libiconv) | 1.18 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowLibiconv converts from one character encoding to another through Unicode conversion
| +| [libidn2](http://www.gnu.org/software/%(name)s) | 2.3.7 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowLibidn2 implements the revised algorithm for internationalized domain names called IDNA2008/TR46.
| +| [libjpeg-turbo](https://libjpeg-turbo.org/) | 3.1.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
Showlibjpeg-turbo is a fork of the original IJG libjpeg which uses SIMD to accelerate baseline JPEG compression and decompression. libjpeg is a library that implements JPEG image encoding, decoding and transcoding.
| +| [libogg](https://xiph.org/ogg/) | 1.3.6 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowOgg is a multimedia container format, and the native file and stream format for the Xiph.org multimedia codecs.
| +| [libopus](https://www.opus-codec.org/) | 1.5.2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowOpus is a totally open, royalty-free, highly versatile audio codec. Opus is unmatched for interactive speech and music transmission over the Internet, but is also intended for storage and streaming applications. It is standardized by the Internet Engineering Task Force (IETF) as RFC 6716 which incorporated technology from Skype’s SILK codec and Xiph.Org’s CELT codec.
| +| [libpciaccess](https://cgit.freedesktop.org/xorg/lib/libpciaccess/) | 0.18.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | system |
ShowGeneric PCI access library.
| +| [libpng](https://www.libpng.org/pub/png/libpng.html) | 1.6.48 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
Showlibpng is the official PNG reference library
| +| [libpsl](https://rockdaboot.github.io/libpsl) | 0.21.5 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowC library for the Public Suffix List
| +| [libreadline](https://tiswww.case.edu/php/chet/readline/rltop.html) | 8.2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowThe GNU Readline library provides a set of functions for use by applications that allow users to edit command lines as they are typed in. Both Emacs and vi editing modes are available. The Readline library includes additional functions to maintain a list of previously-entered command lines, to recall and perhaps reedit those lines, and perform csh-like history expansion on previous commands.
| +| [libsndfile](http://www.mega-nerd.com/libsndfile) | 1.2.2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowLibsndfile is a C library for reading and writing files containing sampled sound (such as MS Windows WAV and the Apple/SGI AIFF format) through one standard library interface.
| +| [libsodium](https://doc.libsodium.org/) | 1.0.20 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowSodium is a modern, easy-to-use software library for encryption, decryption, signatures, password hashing and more.
| +| [libtirpc](https://sourceforge.net/projects/libtirpc/) | 1.3.6 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowLibtirpc is a port of Suns Transport-Independent RPC library to Linux.
| +| [libtool](https://www.gnu.org/software/libtool) | 2.4.7 | NVIDIA Tesla | iris | lib |
ShowGNU libtool is a generic library support script. Libtool hides the complexity of using shared libraries behind a consistent, portable interface.
| +| [libtool](https://www.gnu.org/software/libtool) | 2.5.4 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowGNU libtool is a generic library support script. Libtool hides the complexity of using shared libraries behind a consistent, portable interface.
| +| [libunistring](https://www.gnu.org/software/libunistring/) | 1.3 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowThis library provides functions for manipulating Unicode strings and for manipulating C strings according to the Unicode standard.
| +| [libunwind](https://www.nongnu.org/libunwind/) | 1.8.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowThe primary goal of libunwind is to define a portable and efficient C programming interface (API) to determine the call-chain of a program. The API additionally provides the means to manipulate the preserved (callee-saved) state of each call-frame and to resume execution at any point in the call-chain (non-local goto). The API supports both local (same-process) and remote (across-process) operation. As such, the API is useful in a number of applications
| +| [libvorbis](https://xiph.org/vorbis/) | 1.3.7 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowOgg Vorbis is a fully open, non-proprietary, patent-and-royalty-free, general-purpose compressed audio format
| +| [libwebp](https://developers.google.com/speed/webp/) | 1.5.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowWebP is a modern image format that provides superior lossless and lossy compression for images on the web. Using WebP, webmasters and web developers can create smaller, richer images that make the web faster.
| +| [libxc](https://libxc.gitlab.io) | 7.0.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | chem |
ShowLibxc is a library of exchange-correlation functionals for density-functional theory. The aim is to provide a portable, well tested and reliable set of exchange and correlation functionals.
| +| [libxml2](https://gitlab.gnome.org/GNOME/libxml2/-/wikis) | 2.13.4 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowLibxml2 is the XML C parser and toolchain developed for the Gnome project (but usable outside of the Gnome platform).
| +| [libxslt](https://gitlab.gnome.org/GNOME/libxslt/-/wikis) | 1.1.42 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowLibxslt is the XSLT C library developed for the GNOME project (but usable outside of the Gnome platform).
| +| [libyaml](https://pyyaml.org/wiki/LibYAML) | 0.2.5 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowLibYAML is a YAML parser and emitter written in C.
| +| [lit](https://llvm.org/docs/CommandGuide/lit.html) | 18.1.8 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
Showlit is a portable tool for executing LLVM and Clang style test suites, summarizing their results, and providing indication of failures.
| +| [lxml](https://lxml.de/) | 5.3.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowThe lxml XML toolkit is a Pythonic binding for the C libraries libxml2 and libxslt.
| +| [lz4](https://lz4.github.io/lz4/) | 1.10.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowLZ4 is lossless compression algorithm, providing compression speed at 400 MB/s per core. It features an extremely fast decoder, with speed in multiple GB/s per core.
| +| [make](https://www.gnu.org/software/make/make.html) | 4.4.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | devel |
ShowGNU version of make utility
| +| [makeinfo](https://www.gnu.org/software/texinfo/) | 7.2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | devel |
Showmakeinfo is part of the Texinfo project, the official documentation format of the GNU project.
| +| [matplotlib](https://matplotlib.org) | 3.10.3 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | vis |
Showmatplotlib is a python 2D plotting library which produces publication quality figures in a variety of hardcopy formats and interactive environments across platforms. matplotlib can be used in python scripts, the python and ipython shell, web application servers, and six graphical user interface toolkits.
| +| [maturin](https://github.com/pyo3/maturin) | 1.8.3 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
ShowThis project is meant as a zero configuration replacement for setuptools-rust and milksnake. It supports building wheels for python 3.5+ on windows, linux, mac and freebsd, can upload them to pypi and has basic pypy and graalpy support.
| +| [meson-python](https://github.com/mesonbuild/meson-python) | 0.18.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
ShowPython build backend (PEP 517) for Meson projects
| +| [mpi4py](https://github.com/mpi4py/mpi4py) | 4.1.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowMPI for Python (mpi4py) provides bindings of the Message Passing Interface (MPI) standard for the Python programming language, allowing any Python program to exploit multiple processors.
| +| [ncurses](https://www.gnu.org/software/ncurses/) | 6.5 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | devel |
ShowThe Ncurses (new curses) library is a free software emulation of curses in System V Release 4.0, and more. It uses Terminfo format, supports pads and color and multiple highlights and forms characters and function-key mapping, and has all the other SYSV-curses enhancements over BSD Curses.
| +| [netCDF-Fortran](https://www.unidata.ucar.edu/software/netcdf/) | 4.6.2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | data |
ShowNetCDF (network Common Data Form) is a set of software libraries and machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data.
| +| [netCDF](https://www.unidata.ucar.edu/software/netcdf/) | 4.9.3 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | data |
ShowNetCDF (network Common Data Form) is a set of software libraries and machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data.
| +| [netcdf4-python](https://unidata.github.io/netcdf4-python/) | 1.7.2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | data |
ShowPython/numpy interface to netCDF.
| +| [nettle](https://www.lysator.liu.se/~nisse/nettle/) | 3.10.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowNettle is a cryptographic library that is designed to fit easily in more or less any context: In crypto toolkits for object-oriented languages (C++, Python, Pike, ...), in applications like LSH or GNUPG, or even in kernel space.
| +| [networkx](https://pypi.python.org/pypi/networkx) | 3.5 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
ShowNetworkX is a Python package for the creation, manipulation, and study of the structure, dynamics, and functions of complex networks.
| +| [nlohmann_json](https://github.com/nlohmann/json) | 3.12.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowJSON for Modern C++
| +| [nodejs](https://nodejs.org) | 22.16.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lang |
ShowNode.js is a platform built on Chrome's JavaScript runtime for easily building fast, scalable network applications. Node.js uses an event-driven, non-blocking I/O model that makes it lightweight and efficient, perfect for data-intensive real-time applications that run across distributed devices.
| +| [numactl](https://github.com/numactl/numactl) | 2.0.18 | NVIDIA Tesla | iris | tools |
ShowThe numactl program allows you to run your application program on specific cpu's and memory nodes. It does this by supplying a NUMA memory policy to the operating system before running your program. The libnuma library provides convenient ways for you to add NUMA memory policies into your own program.
| +| [numactl](https://github.com/numactl/numactl) | 2.0.19 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
ShowThe numactl program allows you to run your application program on specific cpu's and memory nodes. It does this by supplying a NUMA memory policy to the operating system before running your program. The libnuma library provides convenient ways for you to add NUMA memory policies into your own program.
| +| [nvidia-compilers](https://developer.nvidia.com/hpc-sdk/) | 25.1 | NVIDIA Tesla | iris | compiler |
ShowC, C++ and Fortran compilers included with the NVIDIA HPC SDK
| +| [occt](https://www.opencascade.com/) | 7.9.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | cae |
ShowOpen CASCADE Technology (OCCT) is an object-oriented C++ class library designed for rapid production of sophisticated domain-specific CAD/CAM/CAE applications.
| +| [patchelf](https://github.com/NixOS/patchelf) | 0.18.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
ShowPatchELF is a small utility to modify the dynamic linker and RPATH of ELF executables.
| +| [pixman](http://www.pixman.org/) | 0.46.2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | vis |
ShowPixman is a low-level software library for pixel manipulation, providing features such as image compositing and trapezoid rasterization. Important users of pixman are the cairo graphics library and the X server.
| +| [pkgconf](https://github.com/pkgconf/pkgconf) | 1.8.0
2.3.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | devel |
Showpkgconf is a program which helps to configure compiler and linker flags for development libraries. It is similar to pkg-config from freedesktop.org.
| +| [poetry](https://python-poetry.org) | 2.1.2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
ShowPython packaging and dependency management made easy. Poetry helps you declare, manage and install dependencies of Python projects, ensuring you have the right stack everywhere.
| +| [psutil](https://github.com/giampaolo/psutil) | 7.0.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowA cross-platform process and system utilities module for Python
| +| [pybind11](https://pybind11.readthedocs.io) | 2.13.6 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
Showpybind11 is a lightweight header-only library that exposes C++ types in Python and vice versa, mainly to create Python bindings of existing C++ code.
| +| [re2c](https://re2c.org) | 4.2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
Showre2c is a free and open-source lexer generator for C and C++. Its main goal is generating fast lexers: at least as fast as their reasonably optimized hand-coded counterparts. Instead of using traditional table-driven approach, re2c encodes the generated finite state automata directly in the form of conditional jumps and comparisons.
| +| [scikit-build-core](https://scikit-build.readthedocs.io/en/latest/) | 0.11.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowScikit-build-core is a complete ground-up rewrite of scikit-build on top of modern packaging APIs. It provides a bridge between CMake and the Python build system, allowing you to make Python modules with CMake.
| +| [scikit-build](https://scikit-build.readthedocs.io/en/latest) | 0.18.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowScikit-Build, or skbuild, is an improved build system generator for CPython C/C++/Fortran/Cython extensions.
| +| [setuptools-rust](https://github.com/PyO3/setuptools-rust) | 1.11.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
Showsetuptools-rust is a plugin for setuptools to build Rust Python extensions implemented with PyO3 or rust-cpython.
| +| [snakemake](https://snakemake.readthedocs.io) | 9.14.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
ShowThe Snakemake workflow management system is a tool to create reproducible and scalable data analyses.
| +| [snappy](https://github.com/google/snappy) | 1.2.2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowSnappy is a compression/decompression library. It does not aim for maximum compression, or compatibility with any other compression library; instead, it aims for very high speeds and reasonable compression.
| +| [spin](https://github.com/scientific-python/spin) | 0.14 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | devel |
ShowDeveloper tool for scientific Python libraries
| +| [tbb](https://github.com/oneapi-src/oneTBB) | 2022.2.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowIntel(R) Threading Building Blocks (Intel(R) TBB) lets you easily write parallel C++ programs that take full advantage of multicore performance, that are portable, composable and have future-proof scalability.
| +| [utf8proc](https://github.com/JuliaStrings/utf8proc) | 2.10.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
Showutf8proc is a small, clean C library that provides Unicode normalization, case-folding, and other operations for data in the UTF-8 encoding.
| +| [util-linux](https://www.kernel.org/pub/linux/utils/util-linux) | 2.41 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
ShowSet of Linux utilities
| +| [virtualenv](https://github.com/pypa/virtualenv) | 20.29.2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
ShowA tool for creating isolated virtual python environments.
| +| [x264](https://www.videolan.org/developers/x264.html) | 20250619 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | vis |
Showx264 is a free software library and application for encoding video streams into the H.264/MPEG-4 AVC compression format, and is released under the terms of the GNU GPL.
| +| [x265](https://x265.org/) | 4.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | vis |
Showx265 is a free software library and application for encoding video streams into the H.265 AVC compression format, and is released under the terms of the GNU GPL.
| +| [xorg-macros](https://gitlab.freedesktop.org/xorg/util/macros) | 1.20.2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | devel |
ShowX.org macros utilities.
| +| [xprop](https://www.x.org/wiki/) | 1.2.8 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | vis |
ShowThe xprop utility is for displaying window and font properties in an X server. One window or font is selected using the command line arguments or possibly in the case of a window, by clicking on the desired window. A list of properties is then given, possibly with formatting information.
| +| [xxd](https://www.vim.org) | 9.1.1457 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
Showxxd is part of the VIM package and this will only install xxd, not vim! xxd converts to/from hexdumps of binary files.
| +| [zlib](https://www.zlib.net/) | 1.2.13
1.3.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
Showzlib is designed to be a free, general-purpose, legally unencumbered -- that is, not covered by any patents -- lossless data-compression library for use on virtually any computer hardware and operating system.
| +| [zlib](https://www.zlib.net/) | 1.3.1 | NVIDIA Tesla | iris | lib |
Showzlib is designed to be a free, general-purpose, legally unencumbered -- that is, not covered by any patents -- lossless data-compression library for use on virtually any computer hardware and operating system.
| +| [zstd](https://facebook.github.io/zstd) | 1.5.6 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowZstandard is a real-time compression algorithm, providing high compression ratios. It offers a very wide range of compression/speed trade-off, while being backed by a very fast decoder. It also offers a special mode for small data, called dictionary compression, and can create dictionaries from any sample set.
| \ No newline at end of file diff --git a/docs/software/swsets/stack.md b/docs/software/swsets/stack.md deleted file mode 100644 index 22adf9f6d..000000000 --- a/docs/software/swsets/stack.md +++ /dev/null @@ -1,1052 +0,0 @@ -| software | version | moduleclass | description | -|:---------------------------------------------------------------------------------------------------------|:---------------|:--------------|:---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------| -| [520nmx](https://docs.lxp.lu) | 20.4 | tools | Custom package for the s10mx fpga board | -| [520nmx](https://docs.lxp.lu) | 20.4 | tools | Custom package for the s10mx fpga board | -| [AMD-uProf](https://developer.amd.com/amd-uprof/) | 5.1.701 | perf | AMD uProf is a performance analysis tool for applications running on Windows, Linux & FreeBSD operating systems. It allows developers to better understand the runtime performance of their application and to identify ways to improve its performance. | -| [AMD-uProf](https://developer.amd.com/amd-uprof/) | 5.1.701 | perf | AMD uProf is a performance analysis tool for applications running on Windows, Linux & FreeBSD operating systems. It allows developers to better understand the runtime performance of their application and to identify ways to improve its performance. | -| [AOCC](https://developer.amd.com/amd-aocc/) | 5.0.0 | compiler | AMD Optimized C/C++ & Fortran compilers (AOCC) based on LLVM 13.0 | -| [AOCC](https://developer.amd.com/amd-aocc/) | 5.0.0 | compiler | AMD Optimized C/C++ & Fortran compilers (AOCC) based on LLVM 13.0 | -| [AOCL-BLAS](https://github.com/amd/blis) | 5.0 | numlib | AOCL-BLAS is AMD's optimized version of BLAS targeted for AMD EPYC and Ryzen CPUs. | -| [AOCL-BLAS](https://github.com/amd/blis) | 5.0 | numlib | AOCL-BLAS is AMD's optimized version of BLAS targeted for AMD EPYC and Ryzen CPUs. | -| [ATK](https://developer.gnome.org/atk/) | 2.38.0 | vis | ATK provides the set of accessibility interfaces that are implemented by other toolkits and applications. Using the ATK interfaces, accessibility tools have full access to view and control running applications. | -| [ATK](https://developer.gnome.org/atk/) | 2.38.0 | vis | ATK provides the set of accessibility interfaces that are implemented by other toolkits and applications. Using the ATK interfaces, accessibility tools have full access to view and control running applications. | -| [Abseil](https://abseil.io/) | 20250512.1 | lib | Abseil is an open-source collection of C++ library code designed to augment the C++ standard library. The Abseil library code is collected from Google's own C++ code base, has been extensively tested and used in production, and is the same code we depend on in our daily coding lives. | -| [Abseil](https://abseil.io/) | 20250512.1 | lib | Abseil is an open-source collection of C++ library code designed to augment the C++ standard library. The Abseil library code is collected from Google's own C++ code base, has been extensively tested and used in production, and is the same code we depend on in our daily coding lives. | -| [AdaptiveCpp](https://github.com/AdaptiveCpp/AdaptiveCpp) | 25.10.0 | devel | AdaptiveCpp is a SYCL and C++ standard parallelism implementation supporting CPUs and multiple GPU backends (CUDA/HIP/etc). | -| [AdaptiveCpp](https://github.com/AdaptiveCpp/AdaptiveCpp) | 25.10.0 | devel | AdaptiveCpp is a SYCL and C++ standard parallelism implementation supporting CPUs and multiple GPU backends (CUDA/HIP/etc). | -| [Advisor](https://software.intel.com/content/www/us/en/develop/tools/oneapi/components/advisor.html) | 2025.0.0 | perf | Vectorization Optimization and Thread Prototyping - Vectorize & thread code or performance “dies” - Easy workflow + data + tips = faster code faster - Prioritize, Prototype & Predict performance gain | -| [Advisor](https://software.intel.com/content/www/us/en/develop/tools/oneapi/components/advisor.html) | 2025.0.0 | perf | Vectorization Optimization and Thread Prototyping - Vectorize & thread code or performance “dies” - Easy workflow + data + tips = faster code faster - Prioritize, Prototype & Predict performance gain | -| [Anaconda3](https://www.anaconda.com) | 2025.06-1 | lang | Built to complement the rich, open source Python community, the Anaconda platform provides an enterprise-ready data analytics platform that empowers companies to adopt a modern open data science analytics architecture. | -| [Anaconda3](https://www.anaconda.com) | 2025.06-1 | lang | Built to complement the rich, open source Python community, the Anaconda platform provides an enterprise-ready data analytics platform that empowers companies to adopt a modern open data science analytics architecture. | -| [Apptainer](https://apptainer.org/docs/admin/main/index.html) | 1.4.2 | tools | Apptainer is an open source container platform designed to be simple, fast, and secure. Many container platforms are available, but Apptainer is designed for ease-of-use on shared systems and in high performance computing (HPC) environments. It features: * An immutable single-file container image format, supporting cryptographic signatures and encryption. * Integration over isolation by default. Easily make use of GPUs, high speed networks, parallel filesystems on a cluster or server. * Mobility of compute. The single file SIF container format is easy to transport and share. * A simple, effective security model. You are the same user inside a container as outside, and cannot gain additional privilege on the host system by default. | -| [Apptainer](https://apptainer.org/docs/admin/main/index.html) | 1.4.2 | tools | Apptainer is an open source container platform designed to be simple, fast, and secure. Many container platforms are available, but Apptainer is designed for ease-of-use on shared systems and in high performance computing (HPC) environments. It features: * An immutable single-file container image format, supporting cryptographic signatures and encryption. * Integration over isolation by default. Easily make use of GPUs, high speed networks, parallel filesystems on a cluster or server. * Mobility of compute. The single file SIF container format is easy to transport and share. * A simple, effective security model. You are the same user inside a container as outside, and cannot gain additional privilege on the host system by default. | -| [Armadillo](https://arma.sourceforge.net/) | 14.6.0 | numlib | Armadillo is an open-source C++ linear algebra library (matrix maths) aiming towards a good balance between speed and ease of use. Integer, floating point and complex numbers are supported, as well as a subset of trigonometric and statistics functions. | -| [Armadillo](https://arma.sourceforge.net/) | 14.6.0 | numlib | Armadillo is an open-source C++ linear algebra library (matrix maths) aiming towards a good balance between speed and ease of use. Integer, floating point and complex numbers are supported, as well as a subset of trigonometric and statistics functions. | -| [Arrow](https://arrow.apache.org) | 22.0.0 | data | Apache Arrow (incl. PyArrow Python bindings), a cross-language development platform for in-memory data. | -| [Arrow](https://arrow.apache.org) | 22.0.0 | data | Apache Arrow (incl. PyArrow Python bindings), a cross-language development platform for in-memory data. | -| [Autoconf](https://www.gnu.org/software/autoconf/) | 2.72 | devel | Autoconf is an extensible package of M4 macros that produce shell scripts to automatically configure software source code packages. These scripts can adapt the packages to many kinds of UNIX-like systems without manual user intervention. Autoconf creates a configuration script for a package from a template file that lists the operating system features that the package can use, in the form of M4 macro calls. | -| [Autoconf](https://www.gnu.org/software/autoconf/) | 2.72 | devel | Autoconf is an extensible package of M4 macros that produce shell scripts to automatically configure software source code packages. These scripts can adapt the packages to many kinds of UNIX-like systems without manual user intervention. Autoconf creates a configuration script for a package from a template file that lists the operating system features that the package can use, in the form of M4 macro calls. | -| [Automake](https://www.gnu.org/software/automake/automake.html) | 1.17 | devel | Automake: GNU Standards-compliant Makefile generator | -| [Automake](https://www.gnu.org/software/automake/automake.html) | 1.17 | devel | Automake: GNU Standards-compliant Makefile generator | -| [Autotools](https://autotools.io) | 20240712 | devel | This bundle collect the standard GNU build tools: Autoconf, Automake and libtool | -| [Autotools](https://autotools.io) | 20240712 | devel | This bundle collect the standard GNU build tools: Autoconf, Automake and libtool | -| [BLIS](https://github.com/flame/blis/) | 1.1 | numlib | BLIS is a portable software framework for instantiating high-performance BLAS-like dense linear algebra libraries. | -| [BLIS](https://github.com/flame/blis/) | 1.1 | numlib | BLIS is a portable software framework for instantiating high-performance BLAS-like dense linear algebra libraries. | -| [BeautifulSoup](https://www.crummy.com/software/BeautifulSoup) | 4.13.4 | data | Beautiful Soup is a Python library designed for quick turnaround projects like screen-scraping. | -| [BeautifulSoup](https://www.crummy.com/software/BeautifulSoup) | 4.13.4 | data | Beautiful Soup is a Python library designed for quick turnaround projects like screen-scraping. | -| [Bison](https://www.gnu.org/software/bison) | 3.8.2 | lang | Bison is a general-purpose parser generator that converts an annotated context-free grammar into a deterministic LR or generalized LR (GLR) parser employing LALR(1) parser tables. | -| [Bison](https://www.gnu.org/software/bison) | 3.8.2 | lang | Bison is a general-purpose parser generator that converts an annotated context-free grammar into a deterministic LR or generalized LR (GLR) parser employing LALR(1) parser tables. | -| [Bison](https://www.gnu.org/software/bison) | 3.8.2 | lang | Bison is a general-purpose parser generator that converts an annotated context-free grammar into a deterministic LR or generalized LR (GLR) parser employing LALR(1) parser tables. | -| [Bison](https://www.gnu.org/software/bison) | 3.8.2 | lang | Bison is a general-purpose parser generator that converts an annotated context-free grammar into a deterministic LR or generalized LR (GLR) parser employing LALR(1) parser tables. | -| [Blender](https://www.blender.org/) | 4.4.0 | vis | Blender is the free and open source 3D creation suite. It supports the entirety of the 3D pipeline-modeling, rigging, animation, simulation, rendering, compositing and motion tracking, even video editing and game creation. | -| [Blender](https://www.blender.org/) | 4.4.0 | vis | Blender is the free and open source 3D creation suite. It supports the entirety of the 3D pipeline-modeling, rigging, animation, simulation, rendering, compositing and motion tracking, even video editing and game creation. | -| [Boost.Python](https://boostorg.github.io/python) | 1.88.0 | lib | Boost.Python is a C++ library which enables seamless interoperability between C++ and the Python programming language. | -| [Boost.Python](https://boostorg.github.io/python) | 1.88.0 | lib | Boost.Python is a C++ library which enables seamless interoperability between C++ and the Python programming language. | -| [Boost](https://www.boost.org/) | 1.88.0 | devel | Boost provides free peer-reviewed portable C++ source libraries. | -| [Boost](https://www.boost.org/) | 1.88.0 | devel | Boost provides free peer-reviewed portable C++ source libraries. | -| [Brotli](https://github.com/google/brotli) | 1.1.0 | lib | Brotli is a generic-purpose lossless compression algorithm that compresses data using a combination of a modern variant of the LZ77 algorithm, Huffman coding and 2nd order context modeling, with a compression ratio comparable to the best currently available general-purpose compression methods. It is similar in speed with deflate but offers more dense compression. The specification of the Brotli Compressed Data Format is defined in RFC 7932. | -| [Brotli](https://github.com/google/brotli) | 1.1.0 | lib | Brotli is a generic-purpose lossless compression algorithm that compresses data using a combination of a modern variant of the LZ77 algorithm, Huffman coding and 2nd order context modeling, with a compression ratio comparable to the best currently available general-purpose compression methods. It is similar in speed with deflate but offers more dense compression. The specification of the Brotli Compressed Data Format is defined in RFC 7932. | -| [Brunsli](https://github.com/google/brunsli/) | 0.1 | lib | Brunsli is a lossless JPEG repacking library. | -| [Brunsli](https://github.com/google/brunsli/) | 0.1 | lib | Brunsli is a lossless JPEG repacking library. | -| [CCCL](https://github.com/NVIDIA/cccl) | 3.1.3 | lib | CUDA C++ Core Libraries (header only) | -| [CCCL](https://github.com/NVIDIA/cccl) | 3.1.3 | lib | CUDA C++ Core Libraries (header only) | -| [CFITSIO](https://heasarc.gsfc.nasa.gov/fitsio/) | 4.6.2 | lib | CFITSIO is a library of C and Fortran subroutines for reading and writing data files in FITS (Flexible Image Transport System) data format. | -| [CFITSIO](https://heasarc.gsfc.nasa.gov/fitsio/) | 4.6.2 | lib | CFITSIO is a library of C and Fortran subroutines for reading and writing data files in FITS (Flexible Image Transport System) data format. | -| [CGAL](https://www.cgal.org/) | 6.0.1 | numlib | The goal of the CGAL Open Source Project is to provide easy access to efficient and reliable geometric algorithms in the form of a C++ library. | -| [CGAL](https://www.cgal.org/) | 6.0.1 | numlib | The goal of the CGAL Open Source Project is to provide easy access to efficient and reliable geometric algorithms in the form of a C++ library. | -| [CMake](https://www.cmake.org) | 3.31.3 | devel | CMake, the cross-platform, open-source build system. CMake is a family of tools designed to build, test and package software. | -| [CMake](https://www.cmake.org) | 3.31.3 | devel | CMake, the cross-platform, open-source build system. CMake is a family of tools designed to build, test and package software. | -| [CP2K](https://www.cp2k.org/) | 2025.2 | chem | CP2K is a freely available (GPL) program, written in Fortran 95, to perform atomistic and molecular simulations of solid state, liquid, molecular and biological systems. It provides a general framework for different methods such as e.g. density functional theory (DFT) using a mixed Gaussian and plane waves approach (GPW), and classical pair and many-body potentials. | -| [CP2K](https://www.cp2k.org/) | 2025.2 | chem | CP2K is a freely available (GPL) program, written in Fortran 95, to perform atomistic and molecular simulations of solid state, liquid, molecular and biological systems. It provides a general framework for different methods such as e.g. density functional theory (DFT) using a mixed Gaussian and plane waves approach (GPW), and classical pair and many-body potentials. | -| [CUDA-Python](https://nvidia.github.io/cuda-python/) | 12.8.0 | lib | Python bindings for CUDA | -| [CUDA-Python](https://nvidia.github.io/cuda-python/) | 12.8.0 | lib | Python bindings for CUDA | -| [CUDA](https://developer.nvidia.com/cuda-toolkit) | 12.8.0 | system | CUDA (formerly Compute Unified Device Architecture) is a parallel computing platform and programming model created by NVIDIA and implemented by the graphics processing units (GPUs) that they produce. CUDA gives developers access to the virtual instruction set and memory of the parallel computational elements in CUDA GPUs. | -| [CUDA](https://developer.nvidia.com/cuda-toolkit) | 12.8.0 | system | CUDA (formerly Compute Unified Device Architecture) is a parallel computing platform and programming model created by NVIDIA and implemented by the graphics processing units (GPUs) that they produce. CUDA gives developers access to the virtual instruction set and memory of the parallel computational elements in CUDA GPUs. | -| [Catch2](https://github.com/catchorg/Catch2) | 2.13.10 | lib | A modern, C++-native, header-only, test framework for unit-tests, TDD and BDD - using C++11, C++14, C++17 and later | -| [Catch2](https://github.com/catchorg/Catch2) | 2.13.10 | lib | A modern, C++-native, header-only, test framework for unit-tests, TDD and BDD - using C++11, C++14, C++17 and later | -| [Cbc](https://github.com/coin-or/Cbc) | 2.10.12 | math | Cbc (Coin-or branch and cut) is an open-source mixed integer linear programming solver written in C++. It can be used as a callable library or using a stand-alone executable. | -| [Cbc](https://github.com/coin-or/Cbc) | 2.10.12 | math | Cbc (Coin-or branch and cut) is an open-source mixed integer linear programming solver written in C++. It can be used as a callable library or using a stand-alone executable. | -| [Cgl](https://github.com/coin-or/Cgl) | 0.60.8 | math | The COIN-OR Cut Generation Library (Cgl) is a collection of cut generators that can be used with other COIN-OR packages that make use of cuts, such as, among others, the linear solver Clp or the mixed integer linear programming solvers Cbc or BCP. Cgl uses the abstract class OsiSolverInterface (see Osi) to use or communicate with a solver. It does not directly call a solver. | -| [Cgl](https://github.com/coin-or/Cgl) | 0.60.8 | math | The COIN-OR Cut Generation Library (Cgl) is a collection of cut generators that can be used with other COIN-OR packages that make use of cuts, such as, among others, the linear solver Clp or the mixed integer linear programming solvers Cbc or BCP. Cgl uses the abstract class OsiSolverInterface (see Osi) to use or communicate with a solver. It does not directly call a solver. | -| [Check](https://libcheck.github.io/check/) | 0.15.2 | lib | Check is a unit testing framework for C. It features a simple interface for defining unit tests, putting little in the way of the developer. Tests are run in a separate address space, so both assertion failures and code errors that cause segmentation faults or other signals can be caught. Test results are reportable in the following: Subunit, TAP, XML, and a generic logging format. | -| [Check](https://libcheck.github.io/check/) | 0.15.2 | lib | Check is a unit testing framework for C. It features a simple interface for defining unit tests, putting little in the way of the developer. Tests are run in a separate address space, so both assertion failures and code errors that cause segmentation faults or other signals can be caught. Test results are reportable in the following: Subunit, TAP, XML, and a generic logging format. | -| [Clp](https://github.com/coin-or/Clp) | 1.17.10 | math | Clp (Coin-or linear programming) is an open-source linear programming solver. It is primarily meant to be used as a callable library, but a basic, stand-alone executable version is also available. | -| [Clp](https://github.com/coin-or/Clp) | 1.17.10 | math | Clp (Coin-or linear programming) is an open-source linear programming solver. It is primarily meant to be used as a callable library, but a basic, stand-alone executable version is also available. | -| [CoinUtils](https://github.com/coin-or/CoinUtils) | 2.11.12 | math | CoinUtils (Coin-OR Utilities) is an open-source collection of classes and functions that are generally useful to more than one COIN-OR project. | -| [CoinUtils](https://github.com/coin-or/CoinUtils) | 2.11.12 | math | CoinUtils (Coin-OR Utilities) is an open-source collection of classes and functions that are generally useful to more than one COIN-OR project. | -| [CubeLib](https://www.scalasca.org/software/cube-4.x/download.html) | 4.9 | perf | Cube, which is used as performance report explorer for Scalasca and Score-P, is a generic tool for displaying a multi-dimensional performance space consisting of the dimensions (i) performance metric, (ii) call path, and (iii) system resource. Each dimension can be represented as a tree, where non-leaf nodes of the tree can be collapsed or expanded to achieve the desired level of granularity. This module provides the Cube general purpose C++ library component and command-line tools. | -| [CubeLib](https://www.scalasca.org/software/cube-4.x/download.html) | 4.9 | perf | Cube, which is used as performance report explorer for Scalasca and Score-P, is a generic tool for displaying a multi-dimensional performance space consisting of the dimensions (i) performance metric, (ii) call path, and (iii) system resource. Each dimension can be represented as a tree, where non-leaf nodes of the tree can be collapsed or expanded to achieve the desired level of granularity. This module provides the Cube general purpose C++ library component and command-line tools. | -| [CubeWriter](https://www.scalasca.org/software/cube-4.x/download.html) | 4.9 | perf | Cube, which is used as performance report explorer for Scalasca and Score-P, is a generic tool for displaying a multi-dimensional performance space consisting of the dimensions (i) performance metric, (ii) call path, and (iii) system resource. Each dimension can be represented as a tree, where non-leaf nodes of the tree can be collapsed or expanded to achieve the desired level of granularity. This module provides the Cube high-performance C writer library component. | -| [CubeWriter](https://www.scalasca.org/software/cube-4.x/download.html) | 4.9 | perf | Cube, which is used as performance report explorer for Scalasca and Score-P, is a generic tool for displaying a multi-dimensional performance space consisting of the dimensions (i) performance metric, (ii) call path, and (iii) system resource. Each dimension can be represented as a tree, where non-leaf nodes of the tree can be collapsed or expanded to achieve the desired level of granularity. This module provides the Cube high-performance C writer library component. | -| [Cython](https://cython.org/) | 3.0.10 | lang | Cython is an optimising static compiler for both the Python programming language and the extended Cython programming language (based on Pyrex). | -| [Cython](https://cython.org/) | 3.0.10 | lang | Cython is an optimising static compiler for both the Python programming language and the extended Cython programming language (based on Pyrex). | -| [Cython](https://cython.org/) | 3.1.1 | lang | Cython is an optimising static compiler for both the Python programming language and the extended Cython programming language (based on Pyrex). | -| [Cython](https://cython.org/) | 3.1.1 | lang | Cython is an optimising static compiler for both the Python programming language and the extended Cython programming language (based on Pyrex). | -| [DBCSR](https://cp2k.github.io/dbcsr/develop/) | 2.8.0 | chem | DBCSR stands for Distributed Blocked Compressed Sparse Row. DBCSR is a library designed to efficiently perform sparse matrix-matrix multiplication, among other operations. | -| [DBCSR](https://cp2k.github.io/dbcsr/develop/) | 2.8.0 | chem | DBCSR stands for Distributed Blocked Compressed Sparse Row. DBCSR is a library designed to efficiently perform sparse matrix-matrix multiplication, among other operations. | -| [DBus](https://dbus.freedesktop.org/) | 1.16.2 | devel | D-Bus is a message bus system, a simple way for applications to talk to one another. In addition to interprocess communication, D-Bus helps coordinate process lifecycle; it makes it simple and reliable to code a "single instance" application or daemon, and to launch applications and daemons on demand when their services are needed. | -| [DBus](https://dbus.freedesktop.org/) | 1.16.2 | devel | D-Bus is a message bus system, a simple way for applications to talk to one another. In addition to interprocess communication, D-Bus helps coordinate process lifecycle; it makes it simple and reliable to code a "single instance" application or daemon, and to launch applications and daemons on demand when their services are needed. | -| [Doxygen](https://www.doxygen.nl) | 1.14.0 | devel | Doxygen is a documentation system for C++, C, Java, Objective-C, Python, IDL (Corba and Microsoft flavors), Fortran, VHDL, PHP, C#, and to some extent D. | -| [Doxygen](https://www.doxygen.nl) | 1.14.0 | devel | Doxygen is a documentation system for C++, C, Java, Objective-C, Python, IDL (Corba and Microsoft flavors), Fortran, VHDL, PHP, C#, and to some extent D. | -| [ELPA](https://elpa.mpcdf.mpg.de/) | 2025.01.002 | math | Eigenvalue SoLvers for Petaflop-Applications. | -| [ELPA](https://elpa.mpcdf.mpg.de/) | 2025.01.002 | math | Eigenvalue SoLvers for Petaflop-Applications. | -| [Eigen](https://eigen.tuxfamily.org) | 3.4.0 | math | Eigen is a C++ template library for linear algebra: matrices, vectors, numerical solvers, and related algorithms. | -| [Eigen](https://eigen.tuxfamily.org) | 3.4.0 | math | Eigen is a C++ template library for linear algebra: matrices, vectors, numerical solvers, and related algorithms. | -| [FFTW.MPI](https://www.fftw.org) | 3.3.10 | numlib | FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) in one or more dimensions, of arbitrary input size, and of both real and complex data. | -| [FFTW.MPI](https://www.fftw.org) | 3.3.10 | numlib | FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) in one or more dimensions, of arbitrary input size, and of both real and complex data. | -| [FFTW](https://www.fftw.org) | 3.3.10 | numlib | FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) in one or more dimensions, of arbitrary input size, and of both real and complex data. | -| [FFTW](https://www.fftw.org) | 3.3.10 | numlib | FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) in one or more dimensions, of arbitrary input size, and of both real and complex data. | -| [FFmpeg](https://www.ffmpeg.org/) | 7.1.1 | vis | A complete, cross-platform solution to record, convert and stream audio and video. | -| [FFmpeg](https://www.ffmpeg.org/) | 7.1.1 | vis | A complete, cross-platform solution to record, convert and stream audio and video. | -| [FLINT](https://www.flintlib.org/) | 3.3.1 | math | FLINT (Fast Library for Number Theory) is a C library in support of computations in number theory. Operations that can be performed include conversions, arithmetic, computing GCDs, factoring, solving linear systems, and evaluating special functions. In addition, FLINT provides various low-level routines for fast arithmetic. FLINT is extensively documented and tested. | -| [FLINT](https://www.flintlib.org/) | 3.3.1 | math | FLINT (Fast Library for Number Theory) is a C library in support of computations in number theory. Operations that can be performed include conversions, arithmetic, computing GCDs, factoring, solving linear systems, and evaluating special functions. In addition, FLINT provides various low-level routines for fast arithmetic. FLINT is extensively documented and tested. | -| [Fiona](https://github.com/Toblerity/Fiona) | 1.10.1 | data | Fiona is designed to be simple and dependable. It focuses on reading and writing data in standard Python IO style and relies upon familiar Python types and protocols such as files, dictionaries, mappings, and iterators instead of classes specific to OGR. Fiona can read and write real-world data using multi-layered GIS formats and zipped virtual file systems and integrates readily with other Python GIS packages such as pyproj, Rtree, and Shapely. | -| [Fiona](https://github.com/Toblerity/Fiona) | 1.10.1 | data | Fiona is designed to be simple and dependable. It focuses on reading and writing data in standard Python IO style and relies upon familiar Python types and protocols such as files, dictionaries, mappings, and iterators instead of classes specific to OGR. Fiona can read and write real-world data using multi-layered GIS formats and zipped virtual file systems and integrates readily with other Python GIS packages such as pyproj, Rtree, and Shapely. | -| [Flask](https://flask.palletsprojects.com/) | 3.1.1 | lib | Flask is a lightweight WSGI web application framework. It is designed to make getting started quick and easy, with the ability to scale up to complex applications. This module includes the Flask extensions: Flask-Cors | -| [Flask](https://flask.palletsprojects.com/) | 3.1.1 | lib | Flask is a lightweight WSGI web application framework. It is designed to make getting started quick and easy, with the ability to scale up to complex applications. This module includes the Flask extensions: Flask-Cors | -| [FlexiBLAS](https://gitlab.mpi-magdeburg.mpg.de/software/flexiblas-release) | 3.4.5 | lib | FlexiBLAS is a wrapper library that enables the exchange of the BLAS and LAPACK implementation used by a program without recompiling or relinking it. | -| [FlexiBLAS](https://gitlab.mpi-magdeburg.mpg.de/software/flexiblas-release) | 3.4.5 | lib | FlexiBLAS is a wrapper library that enables the exchange of the BLAS and LAPACK implementation used by a program without recompiling or relinking it. | -| [FreeImage](http://freeimage.sourceforge.net) | 3.18.0 | vis | FreeImage is an Open Source library project for developers who would like to support popular graphics image formats like PNG, BMP, JPEG, TIFF and others as needed by today's multimedia applications. FreeImage is easy to use, fast, multithreading safe. | -| [FreeImage](http://freeimage.sourceforge.net) | 3.18.0 | vis | FreeImage is an Open Source library project for developers who would like to support popular graphics image formats like PNG, BMP, JPEG, TIFF and others as needed by today's multimedia applications. FreeImage is easy to use, fast, multithreading safe. | -| [FriBidi](https://github.com/fribidi/fribidi) | 1.0.16 | lang | The Free Implementation of the Unicode Bidirectional Algorithm. | -| [FriBidi](https://github.com/fribidi/fribidi) | 1.0.16 | lang | The Free Implementation of the Unicode Bidirectional Algorithm. | -| [GCC](https://gcc.gnu.org/) | 14.2.0 | compiler | The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,...). | -| [GCC](https://gcc.gnu.org/) | 14.2.0 | compiler | The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,...). | -| [GCCcore](https://gcc.gnu.org/) | 14.2.0 | compiler | The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,...). | -| [GCCcore](https://gcc.gnu.org/) | 14.2.0 | compiler | The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,...). | -| [GDAL](https://www.gdal.org) | 3.11.1 | data | GDAL is a translator library for raster geospatial data formats that is released under an X/MIT style Open Source license by the Open Source Geospatial Foundation. As a library, it presents a single abstract data model to the calling application for all supported formats. It also comes with a variety of useful commandline utilities for data translation and processing. | -| [GDAL](https://www.gdal.org) | 3.11.1 | data | GDAL is a translator library for raster geospatial data formats that is released under an X/MIT style Open Source license by the Open Source Geospatial Foundation. As a library, it presents a single abstract data model to the calling application for all supported formats. It also comes with a variety of useful commandline utilities for data translation and processing. | -| [GDB](https://www.gnu.org/software/gdb/gdb.html) | 16.3 | debugger | The GNU Project Debugger | -| [GDB](https://www.gnu.org/software/gdb/gdb.html) | 16.3 | debugger | The GNU Project Debugger | -| [GDRCopy](https://github.com/NVIDIA/gdrcopy) | 2.4.4 | lib | A low-latency GPU memory copy library based on NVIDIA GPUDirect RDMA technology. | -| [GDRCopy](https://github.com/NVIDIA/gdrcopy) | 2.4.4 | lib | A low-latency GPU memory copy library based on NVIDIA GPUDirect RDMA technology. | -| [GEOS](https://trac.osgeo.org/geos) | 3.13.1 | math | GEOS (Geometry Engine - Open Source) is a C++ port of the Java Topology Suite (JTS) | -| [GEOS](https://trac.osgeo.org/geos) | 3.13.1 | math | GEOS (Geometry Engine - Open Source) is a C++ port of the Java Topology Suite (JTS) | -| [GLM](https://github.com/g-truc/glm) | 1.0.1 | lib | OpenGL Mathematics (GLM) is a header only C++ mathematics library for graphics software based on the OpenGL Shading Language (GLSL) specifications. | -| [GLM](https://github.com/g-truc/glm) | 1.0.1 | lib | OpenGL Mathematics (GLM) is a header only C++ mathematics library for graphics software based on the OpenGL Shading Language (GLSL) specifications. | -| [GLPK](https://www.gnu.org/software/glpk/) | 5.0 | tools | The GLPK (GNU Linear Programming Kit) package is intended for solving large-scale linear programming (LP), mixed integer programming (MIP), and other related problems. It is a set of routines written in ANSI C and organized in the form of a callable library. | -| [GLPK](https://www.gnu.org/software/glpk/) | 5.0 | tools | The GLPK (GNU Linear Programming Kit) package is intended for solving large-scale linear programming (LP), mixed integer programming (MIP), and other related problems. It is a set of routines written in ANSI C and organized in the form of a callable library. | -| [GLib](https://www.gtk.org/) | 2.85.1 | vis | GLib is one of the base libraries of the GTK+ project | -| [GLib](https://www.gtk.org/) | 2.85.1 | vis | GLib is one of the base libraries of the GTK+ project | -| [GMP](https://gmplib.org/) | 6.3.0 | math | GMP is a free library for arbitrary precision arithmetic, operating on signed integers, rational numbers, and floating point numbers. | -| [GMP](https://gmplib.org/) | 6.3.0 | math | GMP is a free library for arbitrary precision arithmetic, operating on signed integers, rational numbers, and floating point numbers. | -| [GOTCHA](https://gotcha.readthedocs.io/en/latest/) | 1.0.8 | devel | Gotcha is a library that wraps functions. Tools can use gotcha to install hooks into other libraries, for example putting a wrapper function around libc's malloc. It is similar to LD_PRELOAD, but operates via a programmable API. This enables easy methods of accomplishing tasks like code instrumentation or wholesale replacement of mechanisms in programs without disrupting their source code. | -| [GOTCHA](https://gotcha.readthedocs.io/en/latest/) | 1.0.8 | devel | Gotcha is a library that wraps functions. Tools can use gotcha to install hooks into other libraries, for example putting a wrapper function around libc's malloc. It is similar to LD_PRELOAD, but operates via a programmable API. This enables easy methods of accomplishing tasks like code instrumentation or wholesale replacement of mechanisms in programs without disrupting their source code. | -| [GObject-Introspection](https://gi.readthedocs.io/en/latest/) | 1.84.0 | devel | GObject introspection is a middleware layer between C libraries (using GObject) and language bindings. The C library can be scanned at compile time and generate a metadata file, in addition to the actual native C library. Then at runtime, language bindings can read this metadata and automatically provide bindings to call into the C library. | -| [GObject-Introspection](https://gi.readthedocs.io/en/latest/) | 1.84.0 | devel | GObject introspection is a middleware layer between C libraries (using GObject) and language bindings. The C library can be scanned at compile time and generate a metadata file, in addition to the actual native C library. Then at runtime, language bindings can read this metadata and automatically provide bindings to call into the C library. | -| [GROMACS](https://www.gromacs.org) | 2025.2 | bio | GROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles. This is a GPU enabled build, containing both MPI and threadMPI builds for both single and double precision. It also contains the gmxapi extension for the single precision MPI build next to PLUMED. | -| [GROMACS](https://www.gromacs.org) | 2025.2 | bio | GROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles. This is a GPU enabled build, containing both MPI and threadMPI builds for both single and double precision. It also contains the gmxapi extension for the single precision MPI build next to PLUMED. | -| [GROMACS](https://www.gromacs.org) | 2025.2 | bio | GROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles. This is a CPU only build, containing both MPI and threadMPI binaries for both single and double precision. It also contains the gmxapi extension for the single precision MPI build. | -| [GROMACS](https://www.gromacs.org) | 2025.2 | bio | GROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles. This is a CPU only build, containing both MPI and threadMPI binaries for both single and double precision. It also contains the gmxapi extension for the single precision MPI build. | -| [GSL](https://www.gnu.org/software/gsl/) | 2.8 | numlib | The GNU Scientific Library (GSL) is a numerical library for C and C++ programmers. The library provides a wide range of mathematical routines such as random number generators, special functions and least-squares fitting. | -| [GSL](https://www.gnu.org/software/gsl/) | 2.8 | numlib | The GNU Scientific Library (GSL) is a numerical library for C and C++ programmers. The library provides a wide range of mathematical routines such as random number generators, special functions and least-squares fitting. | -| [GST-plugins-bad](https://gstreamer.freedesktop.org/) | 1.26.6 | vis | GStreamer is a library for constructing graphs of media-handling components. The applications it supports range from simple Ogg/Vorbis playback, audio/video streaming to complex audio (mixing) and video (non-linear editing) processing. | -| [GST-plugins-bad](https://gstreamer.freedesktop.org/) | 1.26.6 | vis | GStreamer is a library for constructing graphs of media-handling components. The applications it supports range from simple Ogg/Vorbis playback, audio/video streaming to complex audio (mixing) and video (non-linear editing) processing. | -| [GST-plugins-base](https://gstreamer.freedesktop.org/) | 1.26.6 | vis | GStreamer is a library for constructing graphs of media-handling components. The applications it supports range from simple Ogg/Vorbis playback, audio/video streaming to complex audio (mixing) and video (non-linear editing) processing. | -| [GST-plugins-base](https://gstreamer.freedesktop.org/) | 1.26.6 | vis | GStreamer is a library for constructing graphs of media-handling components. The applications it supports range from simple Ogg/Vorbis playback, audio/video streaming to complex audio (mixing) and video (non-linear editing) processing. | -| [GStreamer](https://gstreamer.freedesktop.org/) | 1.26.6 | vis | GStreamer is a library for constructing graphs of media-handling components. The applications it supports range from simple Ogg/Vorbis playback, audio/video streaming to complex audio (mixing) and video (non-linear editing) processing. | -| [GStreamer](https://gstreamer.freedesktop.org/) | 1.26.6 | vis | GStreamer is a library for constructing graphs of media-handling components. The applications it supports range from simple Ogg/Vorbis playback, audio/video streaming to complex audio (mixing) and video (non-linear editing) processing. | -| [GTK4](https://docs.gtk.org/gtk4/) | 4.20.2 | vis | GTK+ is the primary library used to construct user interfaces in GNOME. It provides all the user interface controls, or widgets, used in a common graphical application. Its object-oriented API allows you to construct user interfaces without dealing with the low-level details of drawing and device interaction. | -| [GTK4](https://docs.gtk.org/gtk4/) | 4.20.2 | vis | GTK+ is the primary library used to construct user interfaces in GNOME. It provides all the user interface controls, or widgets, used in a common graphical application. Its object-oriented API allows you to construct user interfaces without dealing with the low-level details of drawing and device interaction. | -| [GTS](https://gts.sourceforge.net/) | 0.7.6 | vis | GTS stands for the GNU Triangulated Surface Library. It is an Open Source Free Software Library intended to provide a set of useful functions to deal with 3D surfaces meshed with interconnected triangles. | -| [GTS](https://gts.sourceforge.net/) | 0.7.6 | vis | GTS stands for the GNU Triangulated Surface Library. It is an Open Source Free Software Library intended to provide a set of useful functions to deal with 3D surfaces meshed with interconnected triangles. | -| [Gdk-Pixbuf](https://docs.gtk.org/gdk-pixbuf/) | 2.42.12 | vis | The Gdk Pixbuf is a toolkit for image loading and pixel buffer manipulation. It is used by GTK+ 2 and GTK+ 3 to load and manipulate images. In the past it was distributed as part of GTK+ 2 but it was split off into a separate package in preparation for the change to GTK+ 3. | -| [Gdk-Pixbuf](https://docs.gtk.org/gdk-pixbuf/) | 2.42.12 | vis | The Gdk Pixbuf is a toolkit for image loading and pixel buffer manipulation. It is used by GTK+ 2 and GTK+ 3 to load and manipulate images. In the past it was distributed as part of GTK+ 2 but it was split off into a separate package in preparation for the change to GTK+ 3. | -| [Ghostscript](https://ghostscript.com) | 10.05.1 | tools | Ghostscript is a versatile processor for PostScript data with the ability to render PostScript to different targets. It used to be part of the cups printing stack, but is no longer used for that. | -| [Ghostscript](https://ghostscript.com) | 10.05.1 | tools | Ghostscript is a versatile processor for PostScript data with the ability to render PostScript to different targets. It used to be part of the cups printing stack, but is no longer used for that. | -| [GitPython](https://gitpython.readthedocs.org) | 3.1.45 | lib | GitPython is a python library used to interact with Git repositories | -| [GitPython](https://gitpython.readthedocs.org) | 3.1.45 | lib | GitPython is a python library used to interact with Git repositories | -| [Go](https://www.golang.org) | 1.23.6 | compiler | Go is an open source programming language that makes it easy to build simple, reliable, and efficient software. | -| [Go](https://www.golang.org) | 1.23.6 | compiler | Go is an open source programming language that makes it easy to build simple, reliable, and efficient software. | -| [Graphene](https://ebassi.github.io/graphene/) | 1.10.8 | lib | Graphene is a thin layer of types for graphic libraries | -| [Graphene](https://ebassi.github.io/graphene/) | 1.10.8 | lib | Graphene is a thin layer of types for graphic libraries | -| [Graphviz](https://www.graphviz.org/) | 13.1.2 | vis | Graphviz is open source graph visualization software. Graph visualization is a way of representing structural information as diagrams of abstract graphs and networks. It has important applications in networking, bioinformatics, software engineering, database and web design, machine learning, and in visual interfaces for other technical domains. | -| [Graphviz](https://www.graphviz.org/) | 13.1.2 | vis | Graphviz is open source graph visualization software. Graph visualization is a way of representing structural information as diagrams of abstract graphs and networks. It has important applications in networking, bioinformatics, software engineering, database and web design, machine learning, and in visual interfaces for other technical domains. | -| [Greenlet](https://github.com/python-greenlet/greenlet) | 3.2.3 | devel | The greenlet package is a spin-off of Stackless, a version of CPython that supports micro-threads called "tasklets". Tasklets run pseudo-concurrently (typically in a single or a few OS-level threads) and are synchronized with data exchanges on "channels". A "greenlet", on the other hand, is a still more primitive notion of micro-thread with no implicit scheduling; coroutines, in other words. This is useful when you want to control exactly when your code runs. | -| [Greenlet](https://github.com/python-greenlet/greenlet) | 3.2.3 | devel | The greenlet package is a spin-off of Stackless, a version of CPython that supports micro-threads called "tasklets". Tasklets run pseudo-concurrently (typically in a single or a few OS-level threads) and are synchronized with data exchanges on "channels". A "greenlet", on the other hand, is a still more primitive notion of micro-thread with no implicit scheduling; coroutines, in other words. This is useful when you want to control exactly when your code runs. | -| [HDF5](https://portal.hdfgroup.org/display/support) | 1.14.6 | data | HDF5 is a data model, library, and file format for storing and managing data. It supports an unlimited variety of datatypes, and is designed for flexible and efficient I/O and for high volume and complex data. | -| [HDF5](https://portal.hdfgroup.org/display/support) | 1.14.6 | data | HDF5 is a data model, library, and file format for storing and managing data. It supports an unlimited variety of datatypes, and is designed for flexible and efficient I/O and for high volume and complex data. | -| [HDF5](https://portal.hdfgroup.org/display/support) | 1.14.6 | data | HDF5 is a data model, library, and file format for storing and managing data. It supports an unlimited variety of datatypes, and is designed for flexible and efficient I/O and for high volume and complex data. | -| [HDF5](https://portal.hdfgroup.org/display/support) | 1.14.6 | data | HDF5 is a data model, library, and file format for storing and managing data. It supports an unlimited variety of datatypes, and is designed for flexible and efficient I/O and for high volume and complex data. | -| [HDF](https://support.hdfgroup.org/products/hdf4/) | 4.3.1 | data | HDF (also known as HDF4) is a library and multi-object file format for storing and managing data between machines. | -| [HDF](https://support.hdfgroup.org/products/hdf4/) | 4.3.1 | data | HDF (also known as HDF4) is a library and multi-object file format for storing and managing data between machines. | -| [HPL](https://www.netlib.org/benchmark/hpl/) | 2.3 | tools | HPL is a software package that solves a (random) dense linear system in double precision (64 bits) arithmetic on distributed-memory computers. It can thus be regarded as a portable as well as freely available implementation of the High Performance Computing Linpack Benchmark. | -| [HPL](https://www.netlib.org/benchmark/hpl/) | 2.3 | tools | HPL is a software package that solves a (random) dense linear system in double precision (64 bits) arithmetic on distributed-memory computers. It can thus be regarded as a portable as well as freely available implementation of the High Performance Computing Linpack Benchmark. | -| [HPL](https://www.netlib.org/benchmark/hpl/) | 2.3 | tools | HPL is a software package that solves a (random) dense linear system in double precision (64 bits) arithmetic on distributed-memory computers. It can thus be regarded as a portable as well as freely available implementation of the High Performance Computing Linpack Benchmark. | -| [HPL](https://www.netlib.org/benchmark/hpl/) | 2.3 | tools | HPL is a software package that solves a (random) dense linear system in double precision (64 bits) arithmetic on distributed-memory computers. It can thus be regarded as a portable as well as freely available implementation of the High Performance Computing Linpack Benchmark. | -| [HPX](http://stellar-group.org/libraries/hpx/) | 1.10.0 | math | HPX (High Performance ParalleX) is a general purpose C++ runtime system for parallel and distributed applications of any scale. | -| [HPX](http://stellar-group.org/libraries/hpx/) | 1.10.0 | math | HPX (High Performance ParalleX) is a general purpose C++ runtime system for parallel and distributed applications of any scale. | -| [HTSlib](https://www.htslib.org/) | 1.22.1 | bio | A C library for reading/writing high-throughput sequencing data. This package includes the utilities bgzip and tabix | -| [HTSlib](https://www.htslib.org/) | 1.22.1 | bio | A C library for reading/writing high-throughput sequencing data. This package includes the utilities bgzip and tabix | -| [HarfBuzz](https://www.freedesktop.org/wiki/Software/HarfBuzz) | 11.2.1 | vis | HarfBuzz is an OpenType text shaping engine. | -| [HarfBuzz](https://www.freedesktop.org/wiki/Software/HarfBuzz) | 11.2.1 | vis | HarfBuzz is an OpenType text shaping engine. | -| [HyperQueue](https://it4innovations.github.io/hyperqueue/stable/) | 0.24.0 | tools | HyperQueue is a tool designed to simplify execution of large workflows (task graphs) on HPC clusters. It allows you to execute a large number of tasks in a simple way, without having to manually submit jobs into batch schedulers like Slurm or PBS. You just specify what you want to compute – HyperQueue will automatically ask for computational resources and dynamically load-balance tasks across all allocated nodes and cores. HyperQueue can also work without Slurm/PBS as a general task executor. | -| [HyperQueue](https://it4innovations.github.io/hyperqueue/stable/) | 0.24.0 | tools | HyperQueue is a tool designed to simplify execution of large workflows (task graphs) on HPC clusters. It allows you to execute a large number of tasks in a simple way, without having to manually submit jobs into batch schedulers like Slurm or PBS. You just specify what you want to compute – HyperQueue will automatically ask for computational resources and dynamically load-balance tasks across all allocated nodes and cores. HyperQueue can also work without Slurm/PBS as a general task executor. | -| [Hypre](https://computation.llnl.gov/projects/hypre-scalable-linear-solvers-multigrid-methods) | 2.33.0 | numlib | Hypre is a library for solving large, sparse linear systems of equations on massively parallel computers. The problems of interest arise in the simulation codes being developed at LLNL and elsewhere to study physical phenomena in the defense, environmental, energy, and biological sciences. | -| [Hypre](https://computation.llnl.gov/projects/hypre-scalable-linear-solvers-multigrid-methods) | 2.33.0 | numlib | Hypre is a library for solving large, sparse linear systems of equations on massively parallel computers. The problems of interest arise in the simulation codes being developed at LLNL and elsewhere to study physical phenomena in the defense, environmental, energy, and biological sciences. | -| [ICU](https://icu.unicode.org) | 76.1 | lib | ICU is a mature, widely used set of C/C++ and Java libraries providing Unicode and Globalization support for software applications. | -| [ICU](https://icu.unicode.org) | 76.1 | lib | ICU is a mature, widely used set of C/C++ and Java libraries providing Unicode and Globalization support for software applications. | -| [IJulia](https://github.com/JuliaLang/IJulia.jl) | 1.29.0 | lib | Julia kernel for Jupyter | -| [IJulia](https://github.com/JuliaLang/IJulia.jl) | 1.29.0 | lib | Julia kernel for Jupyter | -| [IPython](https://ipython.org/index.html) | 9.3.0 | tools | IPython provides a rich architecture for interactive computing with: Powerful interactive shells (terminal and Qt-based). A browser-based notebook with support for code, text, mathematical expressions, inline plots and other rich media. Support for interactive data visualization and use of GUI toolkits. Flexible, embeddable interpreters to load into your own projects. Easy to use, high performance tools for parallel computing. | -| [IPython](https://ipython.org/index.html) | 9.3.0 | tools | IPython provides a rich architecture for interactive computing with: Powerful interactive shells (terminal and Qt-based). A browser-based notebook with support for code, text, mathematical expressions, inline plots and other rich media. Support for interactive data visualization and use of GUI toolkits. Flexible, embeddable interpreters to load into your own projects. Easy to use, high performance tools for parallel computing. | -| [IRkernel](https://irkernel.github.io) | 1.3.2 | tools | The R kernel for the 'Jupyter' environment executes R code which the front-end (Jupyter Notebook or other front-ends) submits to the kernel via the network. | -| [IRkernel](https://irkernel.github.io) | 1.3.2 | tools | The R kernel for the 'Jupyter' environment executes R code which the front-end (Jupyter Notebook or other front-ends) submits to the kernel via the network. | -| [ISL](https://libisl.sourceforge.io) | 0.27 | math | isl is a library for manipulating sets and relations of integer points bounded by linear constraints. | -| [ISL](https://libisl.sourceforge.io) | 0.27 | math | isl is a library for manipulating sets and relations of integer points bounded by linear constraints. | -| [Imath](https://imath.readthedocs.io/en/latest/) | 3.1.12 | lib | Imath is a C++ and python library of 2D and 3D vector, matrix, and math operations for computer graphics | -| [Imath](https://imath.readthedocs.io/en/latest/) | 3.1.12 | lib | Imath is a C++ and python library of 2D and 3D vector, matrix, and math operations for computer graphics | -| [Inspector](https://software.intel.com/content/www/us/en/develop/tools/oneapi/components/inspector.html) | 2024.2.0 | tools | Intel Inspector is a dynamic memory and threading error checking tool for users developing serial and parallel applications | -| [Inspector](https://software.intel.com/content/www/us/en/develop/tools/oneapi/components/inspector.html) | 2024.2.0 | tools | Intel Inspector is a dynamic memory and threading error checking tool for users developing serial and parallel applications | -| [JasPer](https://www.ece.uvic.ca/~frodo/jasper/) | 4.2.5 | vis | The JasPer Project is an open-source initiative to provide a free software-based reference implementation of the codec specified in the JPEG-2000 Part-1 standard. | -| [JasPer](https://www.ece.uvic.ca/~frodo/jasper/) | 4.2.5 | vis | The JasPer Project is an open-source initiative to provide a free software-based reference implementation of the codec specified in the JPEG-2000 Part-1 standard. | -| [Java](http://openjdk.java.net) | 11.0.27 | lang | Java Platform, Standard Edition (Java SE) lets you develop and deploy Java applications on desktops and servers. | -| [Java](http://openjdk.java.net) | 11.0.27 | lang | Java Platform, Standard Edition (Java SE) lets you develop and deploy Java applications on desktops and servers. | -| [Java](https://java.com/) | 11 | lang | Java Platform, Standard Edition (Java SE) lets you develop and deploy Java applications on desktops and servers. | -| [Java](https://java.com/) | 11 | lang | Java Platform, Standard Edition (Java SE) lets you develop and deploy Java applications on desktops and servers. | -| [Java](https://java.com/) | 21 | lang | Java Platform, Standard Edition (Java SE) lets you develop and deploy Java applications on desktops and servers. | -| [Java](https://java.com/) | 21 | lang | Java Platform, Standard Edition (Java SE) lets you develop and deploy Java applications on desktops and servers. | -| [Java](https://openjdk.org) | 21.0.7 | lang | Java Platform, Standard Edition (Java SE) lets you develop and deploy Java applications on desktops and servers. | -| [Java](https://openjdk.org) | 21.0.7 | lang | Java Platform, Standard Edition (Java SE) lets you develop and deploy Java applications on desktops and servers. | -| [Java](https://openjdk.org) | 21.0.8 | lang | Java Platform, Standard Edition (Java SE) lets you develop and deploy Java applications on desktops and servers. | -| [Java](https://openjdk.org) | 21.0.8 | lang | Java Platform, Standard Edition (Java SE) lets you develop and deploy Java applications on desktops and servers. | -| [Java](https://openjdk.org) | 23.0.2 | lang | Java Platform, Standard Edition (Java SE) lets you develop and deploy Java applications on desktops and servers. | -| [Java](https://openjdk.org) | 23.0.2 | lang | Java Platform, Standard Edition (Java SE) lets you develop and deploy Java applications on desktops and servers. | -| [JsonCpp](https://open-source-parsers.github.io/jsoncpp-docs/doxygen/index.html) | 1.9.6 | lib | JsonCpp is a C++ library that allows manipulating JSON values, including serialization and deserialization to and from strings. It can also preserve existing comment in unserialization/serialization steps, making it a convenient format to store user input files. | -| [JsonCpp](https://open-source-parsers.github.io/jsoncpp-docs/doxygen/index.html) | 1.9.6 | lib | JsonCpp is a C++ library that allows manipulating JSON values, including serialization and deserialization to and from strings. It can also preserve existing comment in unserialization/serialization steps, making it a convenient format to store user input files. | -| [Judy](http://judy.sourceforge.net/) | 1.0.5 | lib | A C library that implements a dynamic array. | -| [Judy](http://judy.sourceforge.net/) | 1.0.5 | lib | A C library that implements a dynamic array. | -| [Julia](https://julialang.org) | 1.11.3 | lang | Julia is a high-level, high-performance dynamic programming language for numerical computing | -| [Julia](https://julialang.org) | 1.11.3 | lang | Julia is a high-level, high-performance dynamic programming language for numerical computing | -| [Jupyter-bundle](https://jupyter.org/) | 20250702 | tools | This bundle collects a range of Jupyter interfaces (Lab, Notebook and nbclassic), extensions (Jupyter Server Proxy, Jupyter Resource Monitor, Jupyter Lmod) and the JupyterHub. | -| [Jupyter-bundle](https://jupyter.org/) | 20250702 | tools | This bundle collects a range of Jupyter interfaces (Lab, Notebook and nbclassic), extensions (Jupyter Server Proxy, Jupyter Resource Monitor, Jupyter Lmod) and the JupyterHub. | -| [JupyterHub](https://jupyter.org) | 5.3.0 | tools | JupyterHub is a multiuser version of the Jupyter (IPython) notebook designed for centralized deployments in companies, university classrooms and research labs. | -| [JupyterHub](https://jupyter.org) | 5.3.0 | tools | JupyterHub is a multiuser version of the Jupyter (IPython) notebook designed for centralized deployments in companies, university classrooms and research labs. | -| [JupyterLab](https://jupyter.org/) | 4.4.4 | tools | JupyterLab is the next-generation user interface for Project Jupyter offering all the familiar building blocks of the classic Jupyter Notebook (notebook, terminal, text editor, file browser, rich outputs, etc.) in a flexible and powerful user interface. JupyterLab will eventually replace the classic Jupyter Notebook. | -| [JupyterLab](https://jupyter.org/) | 4.4.4 | tools | JupyterLab is the next-generation user interface for Project Jupyter offering all the familiar building blocks of the classic Jupyter Notebook (notebook, terminal, text editor, file browser, rich outputs, etc.) in a flexible and powerful user interface. JupyterLab will eventually replace the classic Jupyter Notebook. | -| [JupyterNotebook](https://jupyter.org/) | 7.4.4 | tools | The Jupyter Notebook is the original web application for creating and sharing computational documents. It offers a simple, streamlined, document-centric experience. | -| [JupyterNotebook](https://jupyter.org/) | 7.4.4 | tools | The Jupyter Notebook is the original web application for creating and sharing computational documents. It offers a simple, streamlined, document-centric experience. | -| [Kokkos](https://kokkos.org) | 4.7.1 | base | Kokkos Core implements a programming model in C++ for writing performance portable applications targeting all major HPC platforms. For that purpose it provides abstractions for both parallel execution of code and data management. Kokkos is designed to target complex node architectures with N-level memory hierarchies and multiple types of execution resources. It currently can use CUDA, HPX, OpenMP and Pthreads as backend programming models with several other backends in development. | -| [Kokkos](https://kokkos.org) | 4.7.1 | base | Kokkos Core implements a programming model in C++ for writing performance portable applications targeting all major HPC platforms. For that purpose it provides abstractions for both parallel execution of code and data management. Kokkos is designed to target complex node architectures with N-level memory hierarchies and multiple types of execution resources. It currently can use CUDA, HPX, OpenMP and Pthreads as backend programming models with several other backends in development. | -| [Kokkos](https://kokkos.org) | 4.7.1 | base | Kokkos Core implements a programming model in C++ for writing performance portable applications targeting all major HPC platforms. For that purpose it provides abstractions for both parallel execution of code and data management. Kokkos is designed to target complex node architectures with N-level memory hierarchies and multiple types of execution resources. It currently can use CUDA, HPX, OpenMP and Pthreads as backend programming models with several other backends in development. | -| [Kokkos](https://kokkos.org) | 4.7.1 | base | Kokkos Core implements a programming model in C++ for writing performance portable applications targeting all major HPC platforms. For that purpose it provides abstractions for both parallel execution of code and data management. Kokkos is designed to target complex node architectures with N-level memory hierarchies and multiple types of execution resources. It currently can use CUDA, HPX, OpenMP and Pthreads as backend programming models with several other backends in development. | -| [LAME](http://lame.sourceforge.net/) | 3.100 | data | LAME is a high quality MPEG Audio Layer III (MP3) encoder licensed under the LGPL. | -| [LAME](http://lame.sourceforge.net/) | 3.100 | data | LAME is a high quality MPEG Audio Layer III (MP3) encoder licensed under the LGPL. | -| [LERC](https://github.com/Esri/lerc) | 4.0.0 | lib | LERC is an open-source image or raster format which supports rapid encoding and decoding for any pixel type (not just RGB or Byte). Users set the maximum compression error per pixel while encoding, so the precision of the original input image is preserved (within user defined error bounds). | -| [LERC](https://github.com/Esri/lerc) | 4.0.0 | lib | LERC is an open-source image or raster format which supports rapid encoding and decoding for any pixel type (not just RGB or Byte). Users set the maximum compression error per pixel while encoding, so the precision of the original input image is preserved (within user defined error bounds). | -| [LLVM](https://llvm.org/) | 20.1.7 | compiler | The LLVM Core libraries provide a modern source- and target-independent optimizer, along with code generation support for many popular CPUs (as well as some less common ones!) These libraries are built around a well specified code representation known as the LLVM intermediate representation ("LLVM IR"). The LLVM Core libraries are well documented, and it is particularly easy to invent your own language (or port an existing compiler) to use LLVM as an optimizer and code generator. | -| [LLVM](https://llvm.org/) | 20.1.7 | compiler | The LLVM Core libraries provide a modern source- and target-independent optimizer, along with code generation support for many popular CPUs (as well as some less common ones!) These libraries are built around a well specified code representation known as the LLVM intermediate representation ("LLVM IR"). The LLVM Core libraries are well documented, and it is particularly easy to invent your own language (or port an existing compiler) to use LLVM as an optimizer and code generator. | -| [LZO](https://www.oberhumer.com/opensource/lzo/) | 2.10 | devel | Portable lossless data compression library | -| [LZO](https://www.oberhumer.com/opensource/lzo/) | 2.10 | devel | Portable lossless data compression library | -| [LibRaw](https://www.libraw.org/) | 0.21.4 | vis | The LibRaw library provides a simple and unified interface for extracting out of RAW files generated by digital photo cameras the following: - RAW data (pixel values) - Metadata necessary for processing RAW (geometry, CFA / Bayer pattern, black level, white balance, etc.) - Embedded preview / thumbnail. | -| [LibRaw](https://www.libraw.org/) | 0.21.4 | vis | The LibRaw library provides a simple and unified interface for extracting out of RAW files generated by digital photo cameras the following: - RAW data (pixel values) - Metadata necessary for processing RAW (geometry, CFA / Bayer pattern, black level, white balance, etc.) - Embedded preview / thumbnail. | -| [LibTIFF](https://libtiff.gitlab.io/libtiff/) | 4.7.0 | lib | tiff: Library and tools for reading and writing TIFF data files | -| [LibTIFF](https://libtiff.gitlab.io/libtiff/) | 4.7.0 | lib | tiff: Library and tools for reading and writing TIFF data files | -| [Libint](https://github.com/evaleev/libint) | 2.11.1 | chem | Libint library is used to evaluate the traditional (electron repulsion) and certain novel two-body matrix elements (integrals) over Cartesian Gaussian functions used in modern atomic and molecular theory. | -| [Libint](https://github.com/evaleev/libint) | 2.11.1 | chem | Libint library is used to evaluate the traditional (electron repulsion) and certain novel two-body matrix elements (integrals) over Cartesian Gaussian functions used in modern atomic and molecular theory. | -| [LightGBM](https://lightgbm.readthedocs.io) | 4.6.0 | ai | A fast, distributed, high performance gradient boosting (GBT, GBDT, GBRT, GBM or MART) framework based on decision tree algorithms, used for ranking, classification and many other machine learning tasks. | -| [LightGBM](https://lightgbm.readthedocs.io) | 4.6.0 | ai | A fast, distributed, high performance gradient boosting (GBT, GBDT, GBRT, GBM or MART) framework based on decision tree algorithms, used for ranking, classification and many other machine learning tasks. | -| [Linaro-Forge](https://www.linaroforge.com/) | 25.1 | tools | Build reliable and optimized code for the right results on multiple Server and HPC architectures, from the latest compilers and C++ standards to Intel, 64-bit Arm, AMD, OpenPOWER and Nvidia GPU hardware. Linaro Forge combines Linaro DDT, the leading debugger for time-saving high performance application debugging, Linaro MAP, the trusted performance profiler for invaluable optimization advice across native and Python HPC codes, and Linaro Performance Reports for advanced reporting capabilities. Linaro DDT and Linaro MAP are also available as standalone products. | -| [Linaro-Forge](https://www.linaroforge.com/) | 25.1 | tools | Build reliable and optimized code for the right results on multiple Server and HPC architectures, from the latest compilers and C++ standards to Intel, 64-bit Arm, AMD, OpenPOWER and Nvidia GPU hardware. Linaro Forge combines Linaro DDT, the leading debugger for time-saving high performance application debugging, Linaro MAP, the trusted performance profiler for invaluable optimization advice across native and Python HPC codes, and Linaro Performance Reports for advanced reporting capabilities. Linaro DDT and Linaro MAP are also available as standalone products. | -| [LittleCMS](https://www.littlecms.com/) | 2.17 | vis | Little CMS intends to be an OPEN SOURCE small-footprint color management engine, with special focus on accuracy and performance. | -| [LittleCMS](https://www.littlecms.com/) | 2.17 | vis | Little CMS intends to be an OPEN SOURCE small-footprint color management engine, with special focus on accuracy and performance. | -| [Lua](https://www.lua.org/) | 5.4.8 | lang | Lua is a powerful, fast, lightweight, embeddable scripting language. Lua combines simple procedural syntax with powerful data description constructs based on associative arrays and extensible semantics. Lua is dynamically typed, runs by interpreting bytecode for a register-based virtual machine, and has automatic memory management with incremental garbage collection, making it ideal for configuration, scripting, and rapid prototyping. | -| [Lua](https://www.lua.org/) | 5.4.8 | lang | Lua is a powerful, fast, lightweight, embeddable scripting language. Lua combines simple procedural syntax with powerful data description constructs based on associative arrays and extensible semantics. Lua is dynamically typed, runs by interpreting bytecode for a register-based virtual machine, and has automatic memory management with incremental garbage collection, making it ideal for configuration, scripting, and rapid prototyping. | -| [M4](https://www.gnu.org/software/m4/m4.html) | 1.4.19 | devel | GNU M4 is an implementation of the traditional Unix macro processor. It is mostly SVR4 compatible although it has some extensions (for example, handling more than 9 positional parameters to macros). GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, etc. | -| [M4](https://www.gnu.org/software/m4/m4.html) | 1.4.19 | devel | GNU M4 is an implementation of the traditional Unix macro processor. It is mostly SVR4 compatible although it has some extensions (for example, handling more than 9 positional parameters to macros). GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, etc. | -| [M4](https://www.gnu.org/software/m4/m4.html) | 1.4.19 | devel | GNU M4 is an implementation of the traditional Unix macro processor. It is mostly SVR4 compatible although it has some extensions (for example, handling more than 9 positional parameters to macros). GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, etc. | -| [M4](https://www.gnu.org/software/m4/m4.html) | 1.4.19 | devel | GNU M4 is an implementation of the traditional Unix macro processor. It is mostly SVR4 compatible although it has some extensions (for example, handling more than 9 positional parameters to macros). GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, etc. | -| [MAQAO](https://maqao.org) | 2025.1.0 | perf | MAQAO (Modular Assembly Quality Analyzer and Optimizer) is a performance analysis and optimization framework operating at binary level with a focus on core performance. Its main goal of is to guide application developers along the optimization process through synthetic reports and hints. MAQAO mixes both dynamic and static analyses based on its ability to reconstruct high level structures such as functions and loops from an application binary. Since MAQAO operates at binary level, it is agnostic with regard to the language used in the source code and does not require recompiling the application to perform analyses. | -| [MAQAO](https://maqao.org) | 2025.1.0 | perf | MAQAO (Modular Assembly Quality Analyzer and Optimizer) is a performance analysis and optimization framework operating at binary level with a focus on core performance. Its main goal of is to guide application developers along the optimization process through synthetic reports and hints. MAQAO mixes both dynamic and static analyses based on its ability to reconstruct high level structures such as functions and loops from an application binary. Since MAQAO operates at binary level, it is agnostic with regard to the language used in the source code and does not require recompiling the application to perform analyses. | -| [MCR](https://www.mathworks.com/products/compiler/mcr/) | R2024b | math | The MATLAB Runtime is a standalone set of shared libraries that enables the execution of compiled MATLAB applications or components on computers that do not have MATLAB installed. | -| [MCR](https://www.mathworks.com/products/compiler/mcr/) | R2024b | math | The MATLAB Runtime is a standalone set of shared libraries that enables the execution of compiled MATLAB applications or components on computers that do not have MATLAB installed. | -| [METIS](https://karypis.github.io/glaros/projects/gp.html) | 5.1.0 | math | METIS is a set of serial programs for partitioning graphs, partitioning finite element meshes, and producing fill reducing orderings for sparse matrices. The algorithms implemented in METIS are based on the multilevel recursive-bisection, multilevel k-way, and multi-constraint partitioning schemes. | -| [METIS](https://karypis.github.io/glaros/projects/gp.html) | 5.1.0 | math | METIS is a set of serial programs for partitioning graphs, partitioning finite element meshes, and producing fill reducing orderings for sparse matrices. The algorithms implemented in METIS are based on the multilevel recursive-bisection, multilevel k-way, and multi-constraint partitioning schemes. | -| [MLflow](https://mlflow.org) | 3.1.1 | tools | MLflow is a platform to streamline machine learning development, including tracking experiments, packaging code into reproducible runs, and sharing and deploying models. | -| [MLflow](https://mlflow.org) | 3.1.1 | tools | MLflow is a platform to streamline machine learning development, including tracking experiments, packaging code into reproducible runs, and sharing and deploying models. | -| [MPC](http://www.multiprecision.org/) | 1.3.1 | math | Gnu Mpc is a C library for the arithmetic of complex numbers with arbitrarily high precision and correct rounding of the result. It extends the principles of the IEEE-754 standard for fixed precision real floating point numbers to complex numbers, providing well-defined semantics for every operation. At the same time, speed of operation at high precision is a major design goal. | -| [MPC](http://www.multiprecision.org/) | 1.3.1 | math | Gnu Mpc is a C library for the arithmetic of complex numbers with arbitrarily high precision and correct rounding of the result. It extends the principles of the IEEE-754 standard for fixed precision real floating point numbers to complex numbers, providing well-defined semantics for every operation. At the same time, speed of operation at high precision is a major design goal. | -| [MPFR](https://www.mpfr.org) | 4.2.2 | math | The MPFR library is a C library for multiple-precision floating-point computations with correct rounding. | -| [MPFR](https://www.mpfr.org) | 4.2.2 | math | The MPFR library is a C library for multiple-precision floating-point computations with correct rounding. | -| [MPICH](https://www.mpich.org/) | 4.3.0 | mpi | MPICH is a high-performance and widely portable implementation of the Message Passing Interface (MPI) standard (MPI-1, MPI-2 and MPI-3). | -| [MPICH](https://www.mpich.org/) | 4.3.0 | mpi | MPICH is a high-performance and widely portable implementation of the Message Passing Interface (MPI) standard (MPI-1, MPI-2 and MPI-3). | -| [MUMPS](https://mumps-solver.org) | 5.8.1 | math | A parallel sparse direct solver | -| [MUMPS](https://mumps-solver.org) | 5.8.1 | math | A parallel sparse direct solver | -| [Mako](https://www.makotemplates.org) | 1.3.10 | devel | A super-fast templating language that borrows the best ideas from the existing templating languages | -| [Mako](https://www.makotemplates.org) | 1.3.10 | devel | A super-fast templating language that borrows the best ideas from the existing templating languages | -| [MariaDB](https://mariadb.org/) | 11.8.3 | data | MariaDB is an enhanced, drop-in replacement for MySQL. Included engines: myISAM, Aria, InnoDB, RocksDB, TokuDB, OQGraph, Mroonga. | -| [MariaDB](https://mariadb.org/) | 11.8.3 | data | MariaDB is an enhanced, drop-in replacement for MySQL. Included engines: myISAM, Aria, InnoDB, RocksDB, TokuDB, OQGraph, Mroonga. | -| [Mesa](https://www.mesa3d.org/) | 25.1.3 | vis | Mesa is an open-source implementation of the OpenGL specification - a system for rendering interactive 3D graphics. | -| [Mesa](https://www.mesa3d.org/) | 25.1.3 | vis | Mesa is an open-source implementation of the OpenGL specification - a system for rendering interactive 3D graphics. | -| [Meson](https://mesonbuild.com) | 1.6.1 | tools | Meson is a cross-platform build system designed to be both as fast and as user friendly as possible. | -| [Meson](https://mesonbuild.com) | 1.6.1 | tools | Meson is a cross-platform build system designed to be both as fast and as user friendly as possible. | -| [Miniconda3](https://docs.conda.io/en/latest/miniconda.html) | 25.7.0-2 | lang | Miniconda is a free minimal installer for conda. It is a small, bootstrap version of Anaconda that includes only conda, Python, the packages they depend on, and a small number of other useful packages. | -| [Miniconda3](https://docs.conda.io/en/latest/miniconda.html) | 25.7.0-2 | lang | Miniconda is a free minimal installer for conda. It is a small, bootstrap version of Anaconda that includes only conda, Python, the packages they depend on, and a small number of other useful packages. | -| [NAMD](https://www.ks.uiuc.edu/Research/namd/) | 3.0.2 | chem | NAMD is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems. | -| [NAMD](https://www.ks.uiuc.edu/Research/namd/) | 3.0.2 | chem | NAMD is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems. | -| [NAMD](https://www.ks.uiuc.edu/Research/namd/) | 3.0.2 | chem | NAMD is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems. | -| [NAMD](https://www.ks.uiuc.edu/Research/namd/) | 3.0.2 | chem | NAMD is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems. | -| [NASM](https://www.nasm.us/) | 2.16.03 | lang | NASM: General-purpose x86 assembler | -| [NASM](https://www.nasm.us/) | 2.16.03 | lang | NASM: General-purpose x86 assembler | -| [NCCL](https://developer.nvidia.com/nccl) | 2.26.6 | lib | The NVIDIA Collective Communications Library (NCCL) implements multi-GPU and multi-node collective communication primitives that are performance optimized for NVIDIA GPUs. | -| [NLopt](https://nlopt.readthedocs.io/en/latest/) | 2.10.0 | numlib | NLopt is a free/open-source library for nonlinear optimization, providing a common interface for a number of different free optimization routines available online as well as original implementations of various other algorithms. | -| [NLopt](https://nlopt.readthedocs.io/en/latest/) | 2.10.0 | numlib | NLopt is a free/open-source library for nonlinear optimization, providing a common interface for a number of different free optimization routines available online as well as original implementations of various other algorithms. | -| [NSPR](https://developer.mozilla.org/en-US/docs/Mozilla/Projects/NSPR) | 4.36 | lib | Netscape Portable Runtime (NSPR) provides a platform-neutral API for system level and libc-like functions. | -| [NSPR](https://developer.mozilla.org/en-US/docs/Mozilla/Projects/NSPR) | 4.36 | lib | Netscape Portable Runtime (NSPR) provides a platform-neutral API for system level and libc-like functions. | -| [NSS](https://developer.mozilla.org/en-US/docs/Mozilla/Projects/NSS) | 3.113 | lib | Network Security Services (NSS) is a set of libraries designed to support cross-platform development of security-enabled client and server applications. | -| [NSS](https://developer.mozilla.org/en-US/docs/Mozilla/Projects/NSS) | 3.113 | lib | Network Security Services (NSS) is a set of libraries designed to support cross-platform development of security-enabled client and server applications. | -| [NTL](https://shoup.net/ntl/) | 11.5.1 | math | NTL is a high-performance, portable C++ library providing data structures and algorithms for manipulating signed, arbitrary length integers, and for vectors, matrices, and polynomials over the integers and over finite fields. | -| [NTL](https://shoup.net/ntl/) | 11.5.1 | math | NTL is a high-performance, portable C++ library providing data structures and algorithms for manipulating signed, arbitrary length integers, and for vectors, matrices, and polynomials over the integers and over finite fields. | -| [NVHPC](https://developer.nvidia.com/hpc-sdk/) | 25.3 | compiler | C, C++ and Fortran compilers included with the NVIDIA HPC SDK (previously: PGI) | -| [NVHPC](https://developer.nvidia.com/hpc-sdk/) | 25.3 | compiler | C, C++ and Fortran compilers included with the NVIDIA HPC SDK (previously: PGI) | -| [NVSHMEM](https://developer.nvidia.com/nvshmem) | 3.4.5 | devel | NVSHMEM is a parallel programming interface based on OpenSHMEM that provides efficient and scalable communication for NVIDIA GPU clusters. NVSHMEM creates a global address space for data that spans the memory of multiple GPUs and can be accessed with fine-grained GPU-initiated operations, CPU-initiated operations, and operations on CUDA streams. | -| [NVSHMEM](https://developer.nvidia.com/nvshmem) | 3.4.5 | devel | NVSHMEM is a parallel programming interface based on OpenSHMEM that provides efficient and scalable communication for NVIDIA GPU clusters. NVSHMEM creates a global address space for data that spans the memory of multiple GPUs and can be accessed with fine-grained GPU-initiated operations, CPU-initiated operations, and operations on CUDA streams. | -| [Nextflow](https://www.nextflow.io/) | 25.04.6 | tools | Nextflow is a reactive workflow framework and a programming DSL that eases writing computational pipelines with complex data | -| [Nextflow](https://www.nextflow.io/) | 25.04.6 | tools | Nextflow is a reactive workflow framework and a programming DSL that eases writing computational pipelines with complex data | -| [Nextflow](https://www.nextflow.io/) | 25.04.8 | tools | Nextflow is a reactive workflow framework and a programming DSL that eases writing computational pipelines with complex data | -| [Nextflow](https://www.nextflow.io/) | 25.04.8 | tools | Nextflow is a reactive workflow framework and a programming DSL that eases writing computational pipelines with complex data | -| [Nextflow](https://www.nextflow.io/) | 25.10.0 | tools | Nextflow is a reactive workflow framework and a programming DSL that eases writing computational pipelines with complex data | -| [Nextflow](https://www.nextflow.io/) | 25.10.0 | tools | Nextflow is a reactive workflow framework and a programming DSL that eases writing computational pipelines with complex data | -| [Ninja](https://ninja-build.org/) | 1.12.1 | tools | Ninja is a small build system with a focus on speed. | -| [Ninja](https://ninja-build.org/) | 1.12.1 | tools | Ninja is a small build system with a focus on speed. | -| [Nsight-Compute](https://developer.nvidia.com/nsight-compute) | 2025.2.0 | tools | NVIDIA Nsight Compute is an interactive kernel profiler for CUDA applications | -| [Nsight-Compute](https://developer.nvidia.com/nsight-compute) | 2025.2.0 | tools | NVIDIA Nsight Compute is an interactive kernel profiler for CUDA applications | -| [Nsight-Systems](https://developer.nvidia.com/nsight-systems) | 2025.3.1 | tools | NVIDIA® Nsight™ Systems is a system-wide performance analysis tool designed to visualize an application’s algorithm, help you select the largest opportunities to optimize, and tune to scale efficiently across any quantity of CPUs and GPUs in your computer; from laptops to DGX servers. | -| [Nsight-Systems](https://developer.nvidia.com/nsight-systems) | 2025.3.1 | tools | NVIDIA® Nsight™ Systems is a system-wide performance analysis tool designed to visualize an application’s algorithm, help you select the largest opportunities to optimize, and tune to scale efficiently across any quantity of CPUs and GPUs in your computer; from laptops to DGX servers. | -| [OPARI2](https://www.score-p.org) | 2.0.9 | perf | OPARI2, the successor of Forschungszentrum Juelich's OPARI, is a source-to-source instrumentation tool for OpenMP and hybrid codes. It surrounds OpenMP directives and runtime library calls with calls to the POMP2 measurement interface. | -| [OPARI2](https://www.score-p.org) | 2.0.9 | perf | OPARI2, the successor of Forschungszentrum Juelich's OPARI, is a source-to-source instrumentation tool for OpenMP and hybrid codes. It surrounds OpenMP directives and runtime library calls with calls to the POMP2 measurement interface. | -| [ORCA](https://orcaforum.kofo.mpg.de) | 6.0.0 | chem | ORCA is a flexible, efficient and easy-to-use general purpose tool for quantum chemistry with specific emphasis on spectroscopic properties of open-shell molecules. It features a wide variety of standard quantum chemical methods ranging from semiempirical methods to DFT to single- and multireference correlated ab initio methods. It can also treat environmental and relativistic effects. | -| [ORCA](https://orcaforum.kofo.mpg.de) | 6.0.0 | chem | ORCA is a flexible, efficient and easy-to-use general purpose tool for quantum chemistry with specific emphasis on spectroscopic properties of open-shell molecules. It features a wide variety of standard quantum chemical methods ranging from semiempirical methods to DFT to single- and multireference correlated ab initio methods. It can also treat environmental and relativistic effects. | -| [OSPRay](https://www.ospray.org) | 2.12.0 | vis | Open, Scalable, and Portable Ray Tracing Engine | -| [OSPRay](https://www.ospray.org) | 2.12.0 | vis | Open, Scalable, and Portable Ray Tracing Engine | -| [OSU-Micro-Benchmarks](https://mvapich.cse.ohio-state.edu/benchmarks/) | 7.5 | perf | OSU Micro-Benchmarks | -| [OSU-Micro-Benchmarks](https://mvapich.cse.ohio-state.edu/benchmarks/) | 7.5 | perf | OSU Micro-Benchmarks | -| [OSU-Micro-Benchmarks](https://mvapich.cse.ohio-state.edu/benchmarks/) | 7.5 | perf | OSU Micro-Benchmarks | -| [OSU-Micro-Benchmarks](https://mvapich.cse.ohio-state.edu/benchmarks/) | 7.5 | perf | OSU Micro-Benchmarks | -| [OSU-Micro-Benchmarks](https://mvapich.cse.ohio-state.edu/benchmarks/) | 7.5 | perf | OSU Micro-Benchmarks | -| [OSU-Micro-Benchmarks](https://mvapich.cse.ohio-state.edu/benchmarks/) | 7.5 | perf | OSU Micro-Benchmarks | -| [OTF2](https://www.score-p.org) | 3.1.1 | perf | The Open Trace Format 2 is a highly scalable, memory efficient event trace data format plus support library. It is the new standard trace format for Scalasca, Vampir, and TAU and is open for other tools. | -| [OTF2](https://www.score-p.org) | 3.1.1 | perf | The Open Trace Format 2 is a highly scalable, memory efficient event trace data format plus support library. It is the new standard trace format for Scalasca, Vampir, and TAU and is open for other tools. | -| [OpenBLAS](https://www.openblas.net/) | 0.3.29 | numlib | OpenBLAS is an optimized BLAS library based on GotoBLAS2 1.13 BSD version. | -| [OpenBLAS](https://www.openblas.net/) | 0.3.29 | numlib | OpenBLAS is an optimized BLAS library based on GotoBLAS2 1.13 BSD version. | -| [OpenCV](https://opencv.org/) | 4.12.0 | vis | OpenCV (Open Source Computer Vision Library) is an open source computer vision and machine learning software library. OpenCV was built to provide a common infrastructure for computer vision applications and to accelerate the use of machine perception in the commercial products. Includes extra modules for OpenCV from the contrib repository. | -| [OpenCV](https://opencv.org/) | 4.12.0 | vis | OpenCV (Open Source Computer Vision Library) is an open source computer vision and machine learning software library. OpenCV was built to provide a common infrastructure for computer vision applications and to accelerate the use of machine perception in the commercial products. Includes extra modules for OpenCV from the contrib repository. | -| [OpenCV](https://opencv.org/) | 4.12.0 | vis | OpenCV (Open Source Computer Vision Library) is an open source computer vision and machine learning software library. OpenCV was built to provide a common infrastructure for computer vision applications and to accelerate the use of machine perception in the commercial products. Includes extra modules for OpenCV from the contrib repository. | -| [OpenCV](https://opencv.org/) | 4.12.0 | vis | OpenCV (Open Source Computer Vision Library) is an open source computer vision and machine learning software library. OpenCV was built to provide a common infrastructure for computer vision applications and to accelerate the use of machine perception in the commercial products. Includes extra modules for OpenCV from the contrib repository. | -| [OpenEXR](https://www.openexr.com/) | 3.3.4 | vis | OpenEXR is a high dynamic-range (HDR) image file format developed by Industrial Light & Magic for use in computer imaging applications | -| [OpenEXR](https://www.openexr.com/) | 3.3.4 | vis | OpenEXR is a high dynamic-range (HDR) image file format developed by Industrial Light & Magic for use in computer imaging applications | -| [OpenFOAM](https://www.openfoam.org/) | 13 | cae | OpenFOAM is a free, open source CFD software package. OpenFOAM has an extensive range of features to solve anything from complex fluid flows involving chemical reactions, turbulence and heat transfer, to solid dynamics and electromagnetics. | -| [OpenFOAM](https://www.openfoam.org/) | 13 | cae | OpenFOAM is a free, open source CFD software package. OpenFOAM has an extensive range of features to solve anything from complex fluid flows involving chemical reactions, turbulence and heat transfer, to solid dynamics and electromagnetics. | -| [OpenJPEG](https://www.openjpeg.org/) | 2.5.3 | lib | OpenJPEG is an open-source JPEG 2000 codec written in C language. It has been developed in order to promote the use of JPEG 2000, a still-image compression standard from the Joint Photographic Experts Group (JPEG). Since may 2015, it is officially recognized by ISO/IEC and ITU-T as a JPEG 2000 Reference Software. | -| [OpenJPEG](https://www.openjpeg.org/) | 2.5.3 | lib | OpenJPEG is an open-source JPEG 2000 codec written in C language. It has been developed in order to promote the use of JPEG 2000, a still-image compression standard from the Joint Photographic Experts Group (JPEG). Since may 2015, it is officially recognized by ISO/IEC and ITU-T as a JPEG 2000 Reference Software. | -| [OpenMPI](https://www.open-mpi.org/) | 5.0.7 | mpi | The Open MPI Project is an open source MPI-3 implementation. | -| [OpenMPI](https://www.open-mpi.org/) | 5.0.7 | mpi | The Open MPI Project is an open source MPI-3 implementation. | -| [OpenMPI](https://www.open-mpi.org/) | 5.0.7 | mpi | The Open MPI Project is an open source MPI-3 implementation. | -| [OpenMPI](https://www.open-mpi.org/) | 5.0.7 | mpi | The Open MPI Project is an open source MPI-3 implementation. | -| [OpenPGM](https://code.google.com/p/openpgm/) | 5.2.122 | system | OpenPGM is an open source implementation of the Pragmatic General Multicast (PGM) specification in RFC 3208 available at www.ietf.org. PGM is a reliable and scalable multicast protocol that enables receivers to detect loss, request retransmission of lost data, or notify an application of unrecoverable loss. PGM is a receiver-reliable protocol, which means the receiver is responsible for ensuring all data is received, absolving the sender of reception responsibility. | -| [OpenPGM](https://code.google.com/p/openpgm/) | 5.2.122 | system | OpenPGM is an open source implementation of the Pragmatic General Multicast (PGM) specification in RFC 3208 available at www.ietf.org. PGM is a reliable and scalable multicast protocol that enables receivers to detect loss, request retransmission of lost data, or notify an application of unrecoverable loss. PGM is a receiver-reliable protocol, which means the receiver is responsible for ensuring all data is received, absolving the sender of reception responsibility. | -| [OpenSSL](https://www.openssl.org/) | 3 | system | The OpenSSL Project is a collaborative effort to develop a robust, commercial-grade, full-featured, and Open Source toolchain implementing the Secure Sockets Layer (SSL v2/v3) and Transport Layer Security (TLS v1) protocols as well as a full-strength general purpose cryptography library. | -| [OpenSSL](https://www.openssl.org/) | 3 | system | The OpenSSL Project is a collaborative effort to develop a robust, commercial-grade, full-featured, and Open Source toolchain implementing the Secure Sockets Layer (SSL v2/v3) and Transport Layer Security (TLS v1) protocols as well as a full-strength general purpose cryptography library. | -| [Osi](https://github.com/coin-or/Osi) | 0.108.11 | math | Osi (Open Solver Interface) provides an abstract base class to a generic linear programming (LP) solver, along with derived classes for specific solvers. Many applications may be able to use the Osi to insulate themselves from a specific LP solver. That is, programs written to the OSI standard may be linked to any solver with an OSI interface and should produce correct results. The OSI has been significantly extended compared to its first incarnation. Currently, the OSI supports linear programming solvers and has rudimentary support for integer programming. | -| [Osi](https://github.com/coin-or/Osi) | 0.108.11 | math | Osi (Open Solver Interface) provides an abstract base class to a generic linear programming (LP) solver, along with derived classes for specific solvers. Many applications may be able to use the Osi to insulate themselves from a specific LP solver. That is, programs written to the OSI standard may be linked to any solver with an OSI interface and should produce correct results. The OSI has been significantly extended compared to its first incarnation. Currently, the OSI supports linear programming solvers and has rudimentary support for integer programming. | -| [PAPI](https://icl.cs.utk.edu/projects/papi/) | 7.2.0 | perf | PAPI provides the tool designer and application engineer with a consistent interface and methodology for use of the performance counter hardware found in most major microprocessors. PAPI enables software engineers to see, in near real time, the relation between software performance and processor events. In addition Component PAPI provides access to a collection of components that expose performance measurement opportunites across the hardware and software stack. | -| [PAPI](https://icl.cs.utk.edu/projects/papi/) | 7.2.0 | perf | PAPI provides the tool designer and application engineer with a consistent interface and methodology for use of the performance counter hardware found in most major microprocessors. PAPI enables software engineers to see, in near real time, the relation between software performance and processor events. In addition Component PAPI provides access to a collection of components that expose performance measurement opportunites across the hardware and software stack. | -| [PAPI](https://icl.cs.utk.edu/projects/papi/) | 7.2.0 | perf | PAPI provides the tool designer and application engineer with a consistent interface and methodology for use of the performance counter hardware found in most major microprocessors. PAPI enables software engineers to see, in near real time, the relation between software performance and processor events. In addition Component PAPI provides access to a collection of components that expose performance measurement opportunites across the hardware and software stack. | -| [PAPI](https://icl.cs.utk.edu/projects/papi/) | 7.2.0 | perf | PAPI provides the tool designer and application engineer with a consistent interface and methodology for use of the performance counter hardware found in most major microprocessors. PAPI enables software engineers to see, in near real time, the relation between software performance and processor events. In addition Component PAPI provides access to a collection of components that expose performance measurement opportunites across the hardware and software stack. | -| [PCRE2](https://www.pcre.org/) | 10.45 | devel | The PCRE library is a set of functions that implement regular expression pattern matching using the same syntax and semantics as Perl 5. | -| [PCRE2](https://www.pcre.org/) | 10.45 | devel | The PCRE library is a set of functions that implement regular expression pattern matching using the same syntax and semantics as Perl 5. | -| [PCRE](https://www.pcre.org/) | 8.45 | devel | The PCRE library is a set of functions that implement regular expression pattern matching using the same syntax and semantics as Perl 5. | -| [PCRE](https://www.pcre.org/) | 8.45 | devel | The PCRE library is a set of functions that implement regular expression pattern matching using the same syntax and semantics as Perl 5. | -| [PETSc](https://www.mcs.anl.gov/petsc) | 3.23.5 | numlib | PETSc, pronounced PET-see (the S is silent), is a suite of data structures and routines for the scalable (parallel) solution of scientific applications modeled by partial differential equations. | -| [PETSc](https://www.mcs.anl.gov/petsc) | 3.23.5 | numlib | PETSc, pronounced PET-see (the S is silent), is a suite of data structures and routines for the scalable (parallel) solution of scientific applications modeled by partial differential equations. | -| [PLUMED](https://www.plumed.org) | 2.9.4 | chem | PLUMED is an open source library for free energy calculations in molecular systems which works together with some of the most popular molecular dynamics engines. Free energy calculations can be performed as a function of many order parameters with a particular focus on biological problems, using state of the art methods such as metadynamics, umbrella sampling and Jarzynski-equation based steered MD. The software, written in C++, can be easily interfaced with both fortran and C/C++ codes. | -| [PLUMED](https://www.plumed.org) | 2.9.4 | chem | PLUMED is an open source library for free energy calculations in molecular systems which works together with some of the most popular molecular dynamics engines. Free energy calculations can be performed as a function of many order parameters with a particular focus on biological problems, using state of the art methods such as metadynamics, umbrella sampling and Jarzynski-equation based steered MD. The software, written in C++, can be easily interfaced with both fortran and C/C++ codes. | -| [PMIx](https://pmix.org/) | 5.0.6 | lib | Process Management for Exascale Environments PMI Exascale (PMIx) represents an attempt to provide an extended version of the PMI standard specifically designed to support clusters up to and including exascale sizes. The overall objective of the project is not to branch the existing pseudo-standard definitions - in fact, PMIx fully supports both of the existing PMI-1 and PMI-2 APIs - but rather to (a) augment and extend those APIs to eliminate some current restrictions that impact scalability, and (b) provide a reference implementation of the PMI-server that demonstrates the desired level of scalability. | -| [PMIx](https://pmix.org/) | 5.0.6 | lib | Process Management for Exascale Environments PMI Exascale (PMIx) represents an attempt to provide an extended version of the PMI standard specifically designed to support clusters up to and including exascale sizes. The overall objective of the project is not to branch the existing pseudo-standard definitions - in fact, PMIx fully supports both of the existing PMI-1 and PMI-2 APIs - but rather to (a) augment and extend those APIs to eliminate some current restrictions that impact scalability, and (b) provide a reference implementation of the PMI-server that demonstrates the desired level of scalability. | -| [PROJ](https://proj.org) | 9.6.2 | lib | Program proj is a standard Unix filter function which converts geographic longitude and latitude coordinates into cartesian coordinates | -| [PROJ](https://proj.org) | 9.6.2 | lib | Program proj is a standard Unix filter function which converts geographic longitude and latitude coordinates into cartesian coordinates | -| [PRRTE](https://docs.prrte.org/) | 3.0.8 | lib | PRRTE is the PMIx Reference RunTime Environment | -| [PRRTE](https://docs.prrte.org/) | 3.0.8 | lib | PRRTE is the PMIx Reference RunTime Environment | -| [Pango](https://www.pango.org/) | 1.56.3 | vis | Pango is a library for laying out and rendering of text, with an emphasis on internationalization. Pango can be used anywhere that text layout is needed, though most of the work on Pango so far has been done in the context of the GTK+ widget toolkit. Pango forms the core of text and font handling for GTK+-2.x. | -| [Pango](https://www.pango.org/) | 1.56.3 | vis | Pango is a library for laying out and rendering of text, with an emphasis on internationalization. Pango can be used anywhere that text layout is needed, though most of the work on Pango so far has been done in the context of the GTK+ widget toolkit. Pango forms the core of text and font handling for GTK+-2.x. | -| [ParMETIS](https://karypis.github.io/glaros/projects/gp.html) | 4.0.3 | math | ParMETIS is an MPI-based parallel library that implements a variety of algorithms for partitioning unstructured graphs, meshes, and for computing fill-reducing orderings of sparse matrices. ParMETIS extends the functionality provided by METIS and includes routines that are especially suited for parallel AMR computations and large scale numerical simulations. The algorithms implemented in ParMETIS are based on the parallel multilevel k-way graph-partitioning, adaptive repartitioning, and parallel multi-constrained partitioning schemes. | -| [ParMETIS](https://karypis.github.io/glaros/projects/gp.html) | 4.0.3 | math | ParMETIS is an MPI-based parallel library that implements a variety of algorithms for partitioning unstructured graphs, meshes, and for computing fill-reducing orderings of sparse matrices. ParMETIS extends the functionality provided by METIS and includes routines that are especially suited for parallel AMR computations and large scale numerical simulations. The algorithms implemented in ParMETIS are based on the parallel multilevel k-way graph-partitioning, adaptive repartitioning, and parallel multi-constrained partitioning schemes. | -| [ParaView](https://www.paraview.org) | 6.0.1 | vis | ParaView is a scientific parallel visualizer. | -| [ParaView](https://www.paraview.org) | 6.0.1 | vis | ParaView is a scientific parallel visualizer. | -| [PennyLane-Lightning](https://pennylane.ai/) | 0.43.0 | quantum | PennyLane is a cross-platform Python library for quantum computing, quantum machine learning, and quantum chemistry. | -| [PennyLane-Lightning](https://pennylane.ai/) | 0.43.0 | quantum | PennyLane is a cross-platform Python library for quantum computing, quantum machine learning, and quantum chemistry. | -| [PennyLane](https://pennylane.ai/) | 0.43.0 | quantum | PennyLane is a cross-platform Python library for quantum computing, quantum machine learning, and quantum chemistry. | -| [PennyLane](https://pennylane.ai/) | 0.43.0 | quantum | PennyLane is a cross-platform Python library for quantum computing, quantum machine learning, and quantum chemistry. | -| [Perl-bundle-CPAN](https://www.perl.org/) | 5.40.0 | lang | A set of common packages from CPAN | -| [Perl-bundle-CPAN](https://www.perl.org/) | 5.40.0 | lang | A set of common packages from CPAN | -| [Perl](https://www.perl.org/) | 5.38.0 | lang | Larry Wall's Practical Extraction and Report Language Includes a small selection of extra CPAN packages for core functionality. | -| [Perl](https://www.perl.org/) | 5.38.0 | lang | Larry Wall's Practical Extraction and Report Language Includes a small selection of extra CPAN packages for core functionality. | -| [Perl](https://www.perl.org/) | 5.40.0 | lang | Larry Wall's Practical Extraction and Report Language Includes a small selection of extra CPAN packages for core functionality. | -| [Perl](https://www.perl.org/) | 5.40.0 | lang | Larry Wall's Practical Extraction and Report Language Includes a small selection of extra CPAN packages for core functionality. | -| [Pillow](https://pillow.readthedocs.org/) | 11.3.0 | vis | Pillow is the 'friendly PIL fork' by Alex Clark and Contributors. PIL is the Python Imaging Library by Fredrik Lundh and Contributors. | -| [Pillow](https://pillow.readthedocs.org/) | 11.3.0 | vis | Pillow is the 'friendly PIL fork' by Alex Clark and Contributors. PIL is the Python Imaging Library by Fredrik Lundh and Contributors. | -| [PnetCDF](https://parallel-netcdf.github.io/) | 1.14.0 | data | Parallel netCDF: A Parallel I/O Library for NetCDF File Access | -| [PnetCDF](https://parallel-netcdf.github.io/) | 1.14.0 | data | Parallel netCDF: A Parallel I/O Library for NetCDF File Access | -| [PostgreSQL](https://www.postgresql.org/) | 17.5 | data | PostgreSQL is a powerful, open source object-relational database system. It is fully ACID compliant, has full support for foreign keys, joins, views, triggers, and stored procedures (in multiple languages). It includes most SQL:2008 data types, including INTEGER, NUMERIC, BOOLEAN, CHAR, VARCHAR, DATE, INTERVAL, and TIMESTAMP. It also supports storage of binary large objects, including pictures, sounds, or video. It has native programming interfaces for C/C++, Java, .Net, Perl, Python, Ruby, Tcl, ODBC, among others, and exceptional documentation. | -| [PostgreSQL](https://www.postgresql.org/) | 17.5 | data | PostgreSQL is a powerful, open source object-relational database system. It is fully ACID compliant, has full support for foreign keys, joins, views, triggers, and stored procedures (in multiple languages). It includes most SQL:2008 data types, including INTEGER, NUMERIC, BOOLEAN, CHAR, VARCHAR, DATE, INTERVAL, and TIMESTAMP. It also supports storage of binary large objects, including pictures, sounds, or video. It has native programming interfaces for C/C++, Java, .Net, Perl, Python, Ruby, Tcl, ODBC, among others, and exceptional documentation. | -| [PuLP](https://github.com/coin-or/pulp) | 2.9.0 | tools | PuLP is an LP modeler written in Python. PuLP can generate MPS or LP files and call GLPK, COIN-OR CLP/CBC, CPLEX, GUROBI, MOSEK, XPRESS, CHOCO, MIPCL, SCIP to solve linear problems. | -| [PuLP](https://github.com/coin-or/pulp) | 2.9.0 | tools | PuLP is an LP modeler written in Python. PuLP can generate MPS or LP files and call GLPK, COIN-OR CLP/CBC, CPLEX, GUROBI, MOSEK, XPRESS, CHOCO, MIPCL, SCIP to solve linear problems. | -| [PyCUDA](https://mathema.tician.de/software/pycuda) | 2025.1.1 | lang | PyCUDA lets you access Nvidia’s CUDA parallel computation API from Python. | -| [PyCUDA](https://mathema.tician.de/software/pycuda) | 2025.1.1 | lang | PyCUDA lets you access Nvidia’s CUDA parallel computation API from Python. | -| [PyCairo](https://pycairo.readthedocs.io/) | 1.28.0 | vis | Python bindings for the cairo library | -| [PyCairo](https://pycairo.readthedocs.io/) | 1.28.0 | vis | Python bindings for the cairo library | -| [PyGObject](https://pygobject.readthedocs.io/) | 3.54.2 | vis | PyGObject is a Python package which provides bindings for GObject based libraries such as GTK, GStreamer, WebKitGTK, GLib, GIO and many more. | -| [PyGObject](https://pygobject.readthedocs.io/) | 3.54.2 | vis | PyGObject is a Python package which provides bindings for GObject based libraries such as GTK, GStreamer, WebKitGTK, GLib, GIO and many more. | -| [PyOpenCL](https://mathema.tician.de/software/pyopencl/) | 2026.1 | vis | PyOpenCL lets you access GPUs and other massively parallel compute devices from Python. | -| [PyOpenCL](https://mathema.tician.de/software/pyopencl/) | 2026.1 | vis | PyOpenCL lets you access GPUs and other massively parallel compute devices from Python. | -| [PyOpenGL](http://pyopengl.sourceforge.net) | 3.1.9 | vis | PyOpenGL is the most common cross platform Python binding to OpenGL and related APIs. | -| [PyOpenGL](http://pyopengl.sourceforge.net) | 3.1.9 | vis | PyOpenGL is the most common cross platform Python binding to OpenGL and related APIs. | -| [PyTorch](https://pytorch.org/) | 2.9.1 | ai | Tensors and Dynamic neural networks in Python with strong GPU acceleration. PyTorch is a deep learning framework that puts Python first. | -| [PyTorch](https://pytorch.org/) | 2.9.1 | ai | Tensors and Dynamic neural networks in Python with strong GPU acceleration. PyTorch is a deep learning framework that puts Python first. | -| [PyWavelets](https://pywavelets.readthedocs.io) | 1.9.0 | lib | PyWavelets is open source wavelet transform software for Python. | -| [PyWavelets](https://pywavelets.readthedocs.io) | 1.9.0 | lib | PyWavelets is open source wavelet transform software for Python. | -| [PyYAML](https://github.com/yaml/pyyaml) | 6.0.2 | lib | PyYAML is a YAML parser and emitter for the Python programming language. | -| [PyYAML](https://github.com/yaml/pyyaml) | 6.0.2 | lib | PyYAML is a YAML parser and emitter for the Python programming language. | -| [PyZMQ](https://www.zeromq.org/bindings:python) | 27.0.0 | devel | Python bindings for ZeroMQ | -| [PyZMQ](https://www.zeromq.org/bindings:python) | 27.0.0 | devel | Python bindings for ZeroMQ | -| [PycURL](http://pycurl.io/) | 7.45.6 | tools | PycURL is a Python interface to libcurl. PycURL can be used to fetch objects identified by a URL from a Python program, similar to the urllib Python module. PycURL is mature, very fast, and supports a lot of features. | -| [PycURL](http://pycurl.io/) | 7.45.6 | tools | PycURL is a Python interface to libcurl. PycURL can be used to fetch objects identified by a URL from a Python program, similar to the urllib Python module. PycURL is mature, very fast, and supports a lot of features. | -| [Python-bundle-PyPI](https://python.org/) | 2025.04 | lang | Bundle of Python packages from PyPI | -| [Python-bundle-PyPI](https://python.org/) | 2025.04 | lang | Bundle of Python packages from PyPI | -| [Python](https://python.org/) | 3.13.1 | lang | Python is a programming language that lets you work more quickly and integrate your systems more effectively. | -| [Python](https://python.org/) | 3.13.1 | lang | Python is a programming language that lets you work more quickly and integrate your systems more effectively. | -| [QCFPGA](https://github.com/ekieffer/qcfpga) | 0.0.1 | quantum | QCFPGA is a FPGA-based fork of QCGPU, an open source, high performance & hardware accelerated, quantum computer simulator | -| [QCFPGA](https://github.com/ekieffer/qcfpga) | 0.0.1 | quantum | QCFPGA is a FPGA-based fork of QCGPU, an open source, high performance & hardware accelerated, quantum computer simulator | -| [Qhull](http://www.qhull.org) | 2020.2 | math | Qhull computes the convex hull, Delaunay triangulation, Voronoi diagram, halfspace intersection about a point, furthest-site Delaunay triangulation, and furthest-site Voronoi diagram. The source code runs in 2-d, 3-d, 4-d, and higher dimensions. Qhull implements the Quickhull algorithm for computing the convex hull. | -| [Qhull](http://www.qhull.org) | 2020.2 | math | Qhull computes the convex hull, Delaunay triangulation, Voronoi diagram, halfspace intersection about a point, furthest-site Delaunay triangulation, and furthest-site Voronoi diagram. The source code runs in 2-d, 3-d, 4-d, and higher dimensions. Qhull implements the Quickhull algorithm for computing the convex hull. | -| [Qiskit](https://qiskit.org) | 2.0.2 | quantum | Qiskit is an open-source framework for working with noisy quantum computers at the level of pulses, circuits, and algorithms. | -| [Qiskit](https://qiskit.org) | 2.0.2 | quantum | Qiskit is an open-source framework for working with noisy quantum computers at the level of pulses, circuits, and algorithms. | -| [Qt6](https://qt.io/) | 6.9.3 | devel | Qt is a comprehensive cross-platform C++ application framework. | -| [Qt6](https://qt.io/) | 6.9.3 | devel | Qt is a comprehensive cross-platform C++ application framework. | -| [QuantumESPRESSO](https://www.quantum-espresso.org) | 7.5 | chem | Quantum ESPRESSO is an integrated suite of computer codes for electronic-structure calculations and materials modeling at the nanoscale. It is based on density-functional theory, plane waves, and pseudopotentials (both norm-conserving and ultrasoft). | -| [QuantumESPRESSO](https://www.quantum-espresso.org) | 7.5 | chem | Quantum ESPRESSO is an integrated suite of computer codes for electronic-structure calculations and materials modeling at the nanoscale. It is based on density-functional theory, plane waves, and pseudopotentials (both norm-conserving and ultrasoft). | -| [RE2](https://github.com/google/re2) | 2024-07-02 | lib | RE2 is a fast, safe, thread-friendly alternative to backtracking regular expression engines like those used in PCRE, Perl, and Python. It is a C++ library. | -| [RE2](https://github.com/google/re2) | 2024-07-02 | lib | RE2 is a fast, safe, thread-friendly alternative to backtracking regular expression engines like those used in PCRE, Perl, and Python. It is a C++ library. | -| [R](https://www.r-project.org/) | 4.5.1 | lang | R is a free software environment for statistical computing and graphics. | -| [R](https://www.r-project.org/) | 4.5.1 | lang | R is a free software environment for statistical computing and graphics. | -| [RapidJSON](https://rapidjson.org) | 1.1.0-20250205 | lib | A fast JSON parser/generator for C++ with both SAX/DOM style API | -| [RapidJSON](https://rapidjson.org) | 1.1.0-20250205 | lib | A fast JSON parser/generator for C++ with both SAX/DOM style API | -| [ReFrame](https://github.com/reframe-hpc/reframe) | 4.8.4 | devel | ReFrame is a framework for writing regression tests for HPC systems. | -| [ReFrame](https://github.com/reframe-hpc/reframe) | 4.8.4 | devel | ReFrame is a framework for writing regression tests for HPC systems. | -| [Rust](https://www.rust-lang.org) | 1.85.1 | lang | Rust is a systems programming language that runs blazingly fast, prevents segfaults, and guarantees thread safety. | -| [Rust](https://www.rust-lang.org) | 1.85.1 | lang | Rust is a systems programming language that runs blazingly fast, prevents segfaults, and guarantees thread safety. | -| [SCOTCH](https://www.labri.fr/perso/pelegrin/scotch/) | 7.0.8 | math | Software package and libraries for sequential and parallel graph partitioning, static mapping, and sparse matrix block ordering, and sequential mesh and hypergraph partitioning. | -| [SCOTCH](https://www.labri.fr/perso/pelegrin/scotch/) | 7.0.8 | math | Software package and libraries for sequential and parallel graph partitioning, static mapping, and sparse matrix block ordering, and sequential mesh and hypergraph partitioning. | -| [SDL2](https://www.libsdl.org/) | 2.32.8 | lib | SDL: Simple DirectMedia Layer, a cross-platform multimedia library | -| [SDL2](https://www.libsdl.org/) | 2.32.8 | lib | SDL: Simple DirectMedia Layer, a cross-platform multimedia library | -| [SIONlib](https://www.fz-juelich.de/ias/jsc/EN/Expertise/Support/Software/SIONlib/_node.html) | 1.7.7 | lib | SIONlib is a scalable I/O library for parallel access to task-local files. The library not only supports writing and reading binary data to or from several thousands of processors into a single or a small number of physical files, but also provides global open and close functions to access SIONlib files in parallel. This package provides a stripped-down installation of SIONlib for use with performance tools (e.g., Score-P), with renamed symbols to avoid conflicts when an application using SIONlib itself is linked against a tool requiring a different SIONlib version. | -| [SIONlib](https://www.fz-juelich.de/ias/jsc/EN/Expertise/Support/Software/SIONlib/_node.html) | 1.7.7 | lib | SIONlib is a scalable I/O library for parallel access to task-local files. The library not only supports writing and reading binary data to or from several thousands of processors into a single or a small number of physical files, but also provides global open and close functions to access SIONlib files in parallel. This package provides a stripped-down installation of SIONlib for use with performance tools (e.g., Score-P), with renamed symbols to avoid conflicts when an application using SIONlib itself is linked against a tool requiring a different SIONlib version. | -| [SOCI](http://soci.sourceforge.net/) | 4.1.2 | lang | SOCI is a database access library for C++ that makes the illusion of embedding SQL queries in the regular C++ code, staying entirely within the Standard C++. | -| [SOCI](http://soci.sourceforge.net/) | 4.1.2 | lang | SOCI is a database access library for C++ that makes the illusion of embedding SQL queries in the regular C++ code, staying entirely within the Standard C++. | -| [SQLAlchemy](https://www.sqlalchemy.org/) | 2.0.41 | lib | SQLAlchemy is the Python SQL toolkit and Object Relational Mapper that gives application developers the full power and flexibility of SQL. SQLAlchemy provides a full suite of well known enterprise-level persistence patterns, designed for efficient and high-performing database access, adapted into a simple and Pythonic domain language. | -| [SQLAlchemy](https://www.sqlalchemy.org/) | 2.0.41 | lib | SQLAlchemy is the Python SQL toolkit and Object Relational Mapper that gives application developers the full power and flexibility of SQL. SQLAlchemy provides a full suite of well known enterprise-level persistence patterns, designed for efficient and high-performing database access, adapted into a simple and Pythonic domain language. | -| [SQLite](https://www.sqlite.org/) | 3.47.2 | devel | SQLite: SQL Database Engine in a C Library | -| [SQLite](https://www.sqlite.org/) | 3.47.2 | devel | SQLite: SQL Database Engine in a C Library | -| [SWIG](http://www.swig.org/) | 4.3.1 | devel | SWIG is a software development tool that connects programs written in C and C++ with a variety of high-level programming languages. | -| [SWIG](http://www.swig.org/) | 4.3.1 | devel | SWIG is a software development tool that connects programs written in C and C++ with a variety of high-level programming languages. | -| [ScaLAPACK](https://www.netlib.org/scalapack/) | 2.2.2 | numlib | The ScaLAPACK (or Scalable LAPACK) library includes a subset of LAPACK routines redesigned for distributed memory MIMD parallel computers. | -| [ScaLAPACK](https://www.netlib.org/scalapack/) | 2.2.2 | numlib | The ScaLAPACK (or Scalable LAPACK) library includes a subset of LAPACK routines redesigned for distributed memory MIMD parallel computers. | -| [Scalasca](https://www.scalasca.org/) | 2.6.2 | perf | Scalasca is a software tool that supports the performance optimization of parallel programs by measuring and analyzing their runtime behavior. The analysis identifies potential performance bottlenecks -- in particular those concerning communication and synchronization -- and offers guidance in exploring their causes. | -| [Scalasca](https://www.scalasca.org/) | 2.6.2 | perf | Scalasca is a software tool that supports the performance optimization of parallel programs by measuring and analyzing their runtime behavior. The analysis identifies potential performance bottlenecks -- in particular those concerning communication and synchronization -- and offers guidance in exploring their causes. | -| [SciPy-bundle](https://python.org/) | 2025.06 | lang | Bundle of Python packages for scientific software | -| [SciPy-bundle](https://python.org/) | 2025.06 | lang | Bundle of Python packages for scientific software | -| [Score-P](https://www.score-p.org) | 9.0 | perf | The Score-P measurement infrastructure is a highly scalable and easy-to-use tool suite for profiling, event tracing, and online analysis of HPC applications. | -| [Score-P](https://www.score-p.org) | 9.0 | perf | The Score-P measurement infrastructure is a highly scalable and easy-to-use tool suite for profiling, event tracing, and online analysis of HPC applications. | -| [Score-P](https://www.score-p.org) | 9.3 | perf | The Score-P measurement infrastructure is a highly scalable and easy-to-use tool suite for profiling, event tracing, and online analysis of HPC applications. | -| [Score-P](https://www.score-p.org) | 9.3 | perf | The Score-P measurement infrastructure is a highly scalable and easy-to-use tool suite for profiling, event tracing, and online analysis of HPC applications. | -| [Score-P](https://www.score-p.org) | 9.3 | perf | The Score-P measurement infrastructure is a highly scalable and easy-to-use tool suite for profiling, event tracing, and online analysis of HPC applications. | -| [Score-P](https://www.score-p.org) | 9.3 | perf | The Score-P measurement infrastructure is a highly scalable and easy-to-use tool suite for profiling, event tracing, and online analysis of HPC applications. | -| [Seaborn](https://seaborn.pydata.org/) | 0.13.2 | bio | Seaborn is a Python visualization library based on matplotlib. It provides a high-level interface for drawing attractive statistical graphics. | -| [Seaborn](https://seaborn.pydata.org/) | 0.13.2 | bio | Seaborn is a Python visualization library based on matplotlib. It provides a high-level interface for drawing attractive statistical graphics. | -| [Shapely](https://github.com/Toblerity/Shapely) | 2.1.1 | math | Shapely is a BSD-licensed Python package for manipulation and analysis of planar geometric objects. It is based on the widely deployed GEOS (the engine of PostGIS) and JTS (from which GEOS is ported) libraries. | -| [Shapely](https://github.com/Toblerity/Shapely) | 2.1.1 | math | Shapely is a BSD-licensed Python package for manipulation and analysis of planar geometric objects. It is based on the widely deployed GEOS (the engine of PostGIS) and JTS (from which GEOS is ported) libraries. | -| [Spark](https://spark.apache.org) | 4.0.0 | devel | Spark is Hadoop MapReduce done in memory | -| [Spark](https://spark.apache.org) | 4.0.0 | devel | Spark is Hadoop MapReduce done in memory | -| [SuiteSparse](https://faculty.cse.tamu.edu/davis/suitesparse.html) | 7.10.3 | numlib | SuiteSparse is a collection of libraries to manipulate sparse matrices. | -| [SuiteSparse](https://faculty.cse.tamu.edu/davis/suitesparse.html) | 7.10.3 | numlib | SuiteSparse is a collection of libraries to manipulate sparse matrices. | -| [SuperLU_DIST](https://crd-legacy.lbl.gov/~xiaoye/SuperLU/) | 9.1.0 | numlib | SuperLU is a general purpose library for the direct solution of large, sparse, nonsymmetric systems of linear equations on high performance machines. | -| [SuperLU_DIST](https://crd-legacy.lbl.gov/~xiaoye/SuperLU/) | 9.1.0 | numlib | SuperLU is a general purpose library for the direct solution of large, sparse, nonsymmetric systems of linear equations on high performance machines. | -| [SymEngine-python](https://github.com/symengine/symengine.py) | 0.14.0 | lib | Python wrappers to the C++ library SymEngine, a fast C++ symbolic manipulation library. | -| [SymEngine-python](https://github.com/symengine/symengine.py) | 0.14.0 | lib | Python wrappers to the C++ library SymEngine, a fast C++ symbolic manipulation library. | -| [SymEngine](https://github.com/symengine/symengine) | 0.14.0 | lib | SymEngine is a standalone fast C++ symbolic manipulation library | -| [SymEngine](https://github.com/symengine/symengine) | 0.14.0 | lib | SymEngine is a standalone fast C++ symbolic manipulation library | -| [Szip](https://docs.hdfgroup.org/archive/support/doc_resource/SZIP/index.html) | 2.1.1 | tools | Szip compression software, providing lossless compression of scientific data | -| [Szip](https://docs.hdfgroup.org/archive/support/doc_resource/SZIP/index.html) | 2.1.1 | tools | Szip compression software, providing lossless compression of scientific data | -| [Tcl](https://www.tcl.tk/) | 8.6.16 | lang | Tcl (Tool Command Language) is a very powerful but easy to learn dynamic programming language, suitable for a very wide range of uses, including web and desktop applications, networking, administration, testing and many more. | -| [Tcl](https://www.tcl.tk/) | 8.6.16 | lang | Tcl (Tool Command Language) is a very powerful but easy to learn dynamic programming language, suitable for a very wide range of uses, including web and desktop applications, networking, administration, testing and many more. | -| [Tk](https://www.tcl.tk/) | 8.6.16 | vis | Tk is an open source, cross-platform widget toolchain that provides a library of basic elements for building a graphical user interface (GUI) in many different programming languages. | -| [Tk](https://www.tcl.tk/) | 8.6.16 | vis | Tk is an open source, cross-platform widget toolchain that provides a library of basic elements for building a graphical user interface (GUI) in many different programming languages. | -| [Tkinter](https://python.org/) | 3.13.1 | lang | Tkinter module, built with the Python buildsystem | -| [Tkinter](https://python.org/) | 3.13.1 | lang | Tkinter module, built with the Python buildsystem | -| [Triton](https://triton-lang.org/) | 3.4.0 | devel | Triton is a language and compiler for parallel programming. It aims to provide a Python-based programming environment for productively writing custom DNN compute kernels capable of running at maximal throughput on modern GPU hardware. | -| [Triton](https://triton-lang.org/) | 3.4.0 | devel | Triton is a language and compiler for parallel programming. It aims to provide a Python-based programming environment for productively writing custom DNN compute kernels capable of running at maximal throughput on modern GPU hardware. | -| [UCC-CUDA](https://www.openucx.org/) | 1.3.0 | lib | UCC (Unified Collective Communication) is a collective communication operations API and library that is flexible, complete, and feature-rich for current and emerging programming models and runtimes. This module adds the UCC CUDA support. | -| [UCC-CUDA](https://www.openucx.org/) | 1.3.0 | lib | UCC (Unified Collective Communication) is a collective communication operations API and library that is flexible, complete, and feature-rich for current and emerging programming models and runtimes. This module adds the UCC CUDA support. | -| [UCC](https://www.openucx.org/) | 1.3.0 | lib | UCC (Unified Collective Communication) is a collective communication operations API and library that is flexible, complete, and feature-rich for current and emerging programming models and runtimes. | -| [UCC](https://www.openucx.org/) | 1.3.0 | lib | UCC (Unified Collective Communication) is a collective communication operations API and library that is flexible, complete, and feature-rich for current and emerging programming models and runtimes. | -| [UCX-CUDA](http://www.openucx.org/) | 1.18.0 | lib | Unified Communication X An open-source production grade communication framework for data centric and high-performance applications This module adds the UCX CUDA support. | -| [UCX-CUDA](http://www.openucx.org/) | 1.18.0 | lib | Unified Communication X An open-source production grade communication framework for data centric and high-performance applications This module adds the UCX CUDA support. | -| [UCX](https://www.openucx.org/) | 1.18.0 | lib | Unified Communication X An open-source production grade communication framework for data centric and high-performance applications | -| [UCX](https://www.openucx.org/) | 1.18.0 | lib | Unified Communication X An open-source production grade communication framework for data centric and high-performance applications | -| [UDUNITS](https://www.unidata.ucar.edu/software/udunits/) | 2.2.28 | phys | UDUNITS supports conversion of unit specifications between formatted and binary forms, arithmetic manipulation of units, and conversion of values between compatible scales of measurement. | -| [UDUNITS](https://www.unidata.ucar.edu/software/udunits/) | 2.2.28 | phys | UDUNITS supports conversion of unit specifications between formatted and binary forms, arithmetic manipulation of units, and conversion of values between compatible scales of measurement. | -| [UnZip](http://www.info-zip.org/UnZip.html) | 6.0 | tools | UnZip is an extraction utility for archives compressed in .zip format (also called "zipfiles"). Although highly compatible both with PKWARE's PKZIP and PKUNZIP utilities for MS-DOS and with Info-ZIP's own Zip program, our primary objectives have been portability and non-MSDOS functionality. | -| [UnZip](http://www.info-zip.org/UnZip.html) | 6.0 | tools | UnZip is an extraction utility for archives compressed in .zip format (also called "zipfiles"). Although highly compatible both with PKWARE's PKZIP and PKUNZIP utilities for MS-DOS and with Info-ZIP's own Zip program, our primary objectives have been portability and non-MSDOS functionality. | -| [VTune](https://software.intel.com/en-us/vtune) | 2025.4.0 | tools | Intel VTune Amplifier XE is the premier performance profiler for C, C++, C#, Fortran, Assembly and Java. | -| [VTune](https://software.intel.com/en-us/vtune) | 2025.4.0 | tools | Intel VTune Amplifier XE is the premier performance profiler for C, C++, C#, Fortran, Assembly and Java. | -| [Valgrind](https://valgrind.org) | 3.25.0 | debugger | Valgrind: Debugging and profiling tools | -| [Valgrind](https://valgrind.org) | 3.25.0 | debugger | Valgrind: Debugging and profiling tools | -| [VirtualGL](https://virtualgl.org/) | 3.1.3 | vis | VirtualGL is an open source toolkit that gives any Linux or Unix remote display software the ability to run OpenGL applications with full hardware acceleration. | -| [VirtualGL](https://virtualgl.org/) | 3.1.3 | vis | VirtualGL is an open source toolkit that gives any Linux or Unix remote display software the ability to run OpenGL applications with full hardware acceleration. | -| [WRF](https://www.mmm.ucar.edu/models/wrf) | 4.6.1 | geo | The Weather Research and Forecasting (WRF) Model is a next-generation mesoscale numerical weather prediction system designed to serve both operational forecasting and atmospheric research needs. | -| [WRF](https://www.mmm.ucar.edu/models/wrf) | 4.6.1 | geo | The Weather Research and Forecasting (WRF) Model is a next-generation mesoscale numerical weather prediction system designed to serve both operational forecasting and atmospheric research needs. | -| [Wannier90](http://www.wannier.org) | 3.1.0 | chem | A tool for obtaining maximally-localised Wannier functions | -| [Wannier90](http://www.wannier.org) | 3.1.0 | chem | A tool for obtaining maximally-localised Wannier functions | -| [Wannier90](http://www.wannier.org) | 3.1.0 | chem | A tool for obtaining maximally-localised Wannier functions | -| [Wannier90](http://www.wannier.org) | 3.1.0 | chem | A tool for obtaining maximally-localised Wannier functions | -| [Wayland](https://wayland.freedesktop.org/) | 1.23.92 | vis | Wayland is a project to define a protocol for a compositor to talk to its clients as well as a library implementation of the protocol. The compositor can be a standalone display server running on Linux kernel modesetting and evdev input devices, an X application, or a wayland client itself. The clients can be traditional applications, X servers (rootless or fullscreen) or other display servers. | -| [Wayland](https://wayland.freedesktop.org/) | 1.23.92 | vis | Wayland is a project to define a protocol for a compositor to talk to its clients as well as a library implementation of the protocol. The compositor can be a standalone display server running on Linux kernel modesetting and evdev input devices, an X application, or a wayland client itself. The clients can be traditional applications, X servers (rootless or fullscreen) or other display servers. | -| [X11](https://www.x.org) | 20250521 | vis | The X Window System (X11) is a windowing system for bitmap displays | -| [X11](https://www.x.org) | 20250521 | vis | The X Window System (X11) is a windowing system for bitmap displays | -| [XGBoost](https://github.com/dmlc/xgboost) | 3.1.1 | ai | XGBoost is an optimized distributed gradient boosting library designed to be highly efficient, flexible and portable. | -| [XGBoost](https://github.com/dmlc/xgboost) | 3.1.1 | ai | XGBoost is an optimized distributed gradient boosting library designed to be highly efficient, flexible and portable. | -| [XZ](https://tukaani.org/xz/) | 5.6.3 | tools | xz: XZ utilities | -| [XZ](https://tukaani.org/xz/) | 5.6.3 | tools | xz: XZ utilities | -| [Xerces-C++](https://xerces.apache.org/xerces-c/) | 3.3.0 | lib | Xerces-C++ is a validating XML parser written in a portable subset of C++. Xerces-C++ makes it easy to give your application the ability to read and write XML data. A shared library is provided for parsing, generating, manipulating, and validating XML documents using the DOM, SAX, and SAX2 APIs. | -| [Xerces-C++](https://xerces.apache.org/xerces-c/) | 3.3.0 | lib | Xerces-C++ is a validating XML parser written in a portable subset of C++. Xerces-C++ makes it easy to give your application the ability to read and write XML data. A shared library is provided for parsing, generating, manipulating, and validating XML documents using the DOM, SAX, and SAX2 APIs. | -| [Xvfb](https://www.x.org/releases/X11R7.6/doc/man/man1/Xvfb.1.xhtml) | 21.1.18 | vis | Xvfb is an X server that can run on machines with no display hardware and no physical input devices. It emulates a dumb framebuffer using virtual memory. | -| [Xvfb](https://www.x.org/releases/X11R7.6/doc/man/man1/Xvfb.1.xhtml) | 21.1.18 | vis | Xvfb is an X server that can run on machines with no display hardware and no physical input devices. It emulates a dumb framebuffer using virtual memory. | -| [Yasm](https://www.tortall.net/projects/yasm/) | 1.3.0 | lang | Yasm: Complete rewrite of the NASM assembler with BSD license | -| [Yasm](https://www.tortall.net/projects/yasm/) | 1.3.0 | lang | Yasm: Complete rewrite of the NASM assembler with BSD license | -| [Z3](https://github.com/Z3Prover/z3) | 4.13.4 | tools | Z3 is a theorem prover from Microsoft Research with support for bitvectors, booleans, arrays, floating point numbers, strings, and other data types. This module includes z3-solver, the Python interface of Z3. | -| [Z3](https://github.com/Z3Prover/z3) | 4.13.4 | tools | Z3 is a theorem prover from Microsoft Research with support for bitvectors, booleans, arrays, floating point numbers, strings, and other data types. This module includes z3-solver, the Python interface of Z3. | -| [ZeroMQ](https://www.zeromq.org/) | 4.3.5 | devel | ZeroMQ looks like an embeddable networking library but acts like a concurrency framework. It gives you sockets that carry atomic messages across various transports like in-process, inter-process, TCP, and multicast. You can connect sockets N-to-N with patterns like fanout, pub-sub, task distribution, and request-reply. It's fast enough to be the fabric for clustered products. Its asynchronous I/O model gives you scalable multicore applications, built as asynchronous message-processing tasks. It has a score of language APIs and runs on most operating systems. | -| [ZeroMQ](https://www.zeromq.org/) | 4.3.5 | devel | ZeroMQ looks like an embeddable networking library but acts like a concurrency framework. It gives you sockets that carry atomic messages across various transports like in-process, inter-process, TCP, and multicast. You can connect sockets N-to-N with patterns like fanout, pub-sub, task distribution, and request-reply. It's fast enough to be the fabric for clustered products. Its asynchronous I/O model gives you scalable multicore applications, built as asynchronous message-processing tasks. It has a score of language APIs and runs on most operating systems. | -| [Zip](http://www.info-zip.org/Zip.html) | 3.0 | tools | Zip is a compression and file packaging/archive utility. Although highly compatible both with PKWARE's PKZIP and PKUNZIP utilities for MS-DOS and with Info-ZIP's own UnZip, our primary objectives have been portability and other-than-MSDOS functionality | -| [Zip](http://www.info-zip.org/Zip.html) | 3.0 | tools | Zip is a compression and file packaging/archive utility. Although highly compatible both with PKWARE's PKZIP and PKUNZIP utilities for MS-DOS and with Info-ZIP's own UnZip, our primary objectives have been portability and other-than-MSDOS functionality | -| [Zoltan](https://sandialabs.github.io/Zoltan/) | 3.901 | cae | Zoltan Dynamic Load Balancing and Graph Algorithm Toolkit | -| [Zoltan](https://sandialabs.github.io/Zoltan/) | 3.901 | cae | Zoltan Dynamic Load Balancing and Graph Algorithm Toolkit | -| [absl-py](https://github.com/abseil/abseil-py) | 2.3.1 | tools | absl-py is a collection of Python library code for building Python applications. The code is collected from Google's own Python code base, and has been extensively tested and used in production. | -| [absl-py](https://github.com/abseil/abseil-py) | 2.3.1 | tools | absl-py is a collection of Python library code for building Python applications. The code is collected from Google's own Python code base, and has been extensively tested and used in production. | -| [aiohttp](https://github.com/aio-libs/aiohttp) | 3.12.13 | lib | Asynchronous HTTP client/server framework for asyncio and Python. | -| [aiohttp](https://github.com/aio-libs/aiohttp) | 3.12.13 | lib | Asynchronous HTTP client/server framework for asyncio and Python. | -| [ant](https://ant.apache.org/) | 1.10.14 | devel | Apache Ant is a Java library and command-line tool whose mission is to drive processes described in build files as targets and extension points dependent upon each other. The main known usage of Ant is the build of Java applications. | -| [ant](https://ant.apache.org/) | 1.10.14 | devel | Apache Ant is a Java library and command-line tool whose mission is to drive processes described in build files as targets and extension points dependent upon each other. The main known usage of Ant is the build of Java applications. | -| [ant](https://ant.apache.org/) | 1.10.14 | devel | Apache Ant is a Java library and command-line tool whose mission is to drive processes described in build files as targets and extension points dependent upon each other. The main known usage of Ant is the build of Java applications. | -| [ant](https://ant.apache.org/) | 1.10.14 | devel | Apache Ant is a Java library and command-line tool whose mission is to drive processes described in build files as targets and extension points dependent upon each other. The main known usage of Ant is the build of Java applications. | -| [archspec](https://github.com/archspec/archspec) | 0.2.5 | tools | A library for detecting, labeling, and reasoning about microarchitectures | -| [archspec](https://github.com/archspec/archspec) | 0.2.5 | tools | A library for detecting, labeling, and reasoning about microarchitectures | -| [arpack-ng](https://github.com/opencollab/arpack-ng) | 3.9.1 | numlib | ARPACK is a collection of Fortran77 subroutines designed to solve large scale eigenvalue problems. | -| [arpack-ng](https://github.com/opencollab/arpack-ng) | 3.9.1 | numlib | ARPACK is a collection of Fortran77 subroutines designed to solve large scale eigenvalue problems. | -| [assimp](https://github.com/assimp/assimp) | 6.0.2 | vis | Open Asset Import Library (assimp) is a library to import and export various 3d-model-formats including scene-post-processing to generate missing render data. | -| [assimp](https://github.com/assimp/assimp) | 6.0.2 | vis | Open Asset Import Library (assimp) is a library to import and export various 3d-model-formats including scene-post-processing to generate missing render data. | -| [at-spi2-atk](https://wiki.gnome.org/Accessibility) | 2.38.0 | vis | AT-SPI 2 toolkit bridge | -| [at-spi2-atk](https://wiki.gnome.org/Accessibility) | 2.38.0 | vis | AT-SPI 2 toolkit bridge | -| [at-spi2-core](https://wiki.gnome.org/Accessibility) | 2.56.2 | vis | Assistive Technology Service Provider Interface. | -| [at-spi2-core](https://wiki.gnome.org/Accessibility) | 2.56.2 | vis | Assistive Technology Service Provider Interface. | -| [attr](https://savannah.nongnu.org/projects/attr) | 2.5.2 | tools | Commands for Manipulating Filesystem Extended Attributes | -| [attr](https://savannah.nongnu.org/projects/attr) | 2.5.2 | tools | Commands for Manipulating Filesystem Extended Attributes | -| [bcrypt](https://github.com/pyca/bcrypt/) | 4.3.0 | tools | Acceptable password hashing for your software and your servers (but you should really use argon2id or scrypt) | -| [bcrypt](https://github.com/pyca/bcrypt/) | 4.3.0 | tools | Acceptable password hashing for your software and your servers (but you should really use argon2id or scrypt) | -| [binutils](https://directory.fsf.org/project/binutils/) | 2.40 | tools | binutils: GNU binary utilities | -| [binutils](https://directory.fsf.org/project/binutils/) | 2.40 | tools | binutils: GNU binary utilities | -| [binutils](https://directory.fsf.org/project/binutils/) | 2.42 | tools | binutils: GNU binary utilities | -| [binutils](https://directory.fsf.org/project/binutils/) | 2.42 | tools | binutils: GNU binary utilities | -| [binutils](https://directory.fsf.org/project/binutils/) | 2.42 | tools | binutils: GNU binary utilities | -| [binutils](https://directory.fsf.org/project/binutils/) | 2.42 | tools | binutils: GNU binary utilities | -| [bokeh](https://github.com/bokeh/bokeh) | 3.7.3 | tools | Statistical and novel interactive HTML plots for Python | -| [bokeh](https://github.com/bokeh/bokeh) | 3.7.3 | tools | Statistical and novel interactive HTML plots for Python | -| [bzip2](https://sourceware.org/bzip2) | 1.0.8 | tools | bzip2 is a freely available, patent free, high-quality data compressor. It typically compresses files to within 10% to 15% of the best available techniques (the PPM family of statistical compressors), whilst being around twice as fast at compression and six times faster at decompression. | -| [bzip2](https://sourceware.org/bzip2) | 1.0.8 | tools | bzip2 is a freely available, patent free, high-quality data compressor. It typically compresses files to within 10% to 15% of the best available techniques (the PPM family of statistical compressors), whilst being around twice as fast at compression and six times faster at decompression. | -| [cURL](https://curl.haxx.se) | 8.11.1 | tools | libcurl is a free and easy-to-use client-side URL transfer library, supporting DICT, FILE, FTP, FTPS, Gopher, HTTP, HTTPS, IMAP, IMAPS, LDAP, LDAPS, POP3, POP3S, RTMP, RTSP, SCP, SFTP, SMTP, SMTPS, Telnet and TFTP. libcurl supports SSL certificates, HTTP POST, HTTP PUT, FTP uploading, HTTP form based upload, proxies, cookies, user+password authentication (Basic, Digest, NTLM, Negotiate, Kerberos), file transfer resume, http proxy tunneling and more. | -| [cURL](https://curl.haxx.se) | 8.11.1 | tools | libcurl is a free and easy-to-use client-side URL transfer library, supporting DICT, FILE, FTP, FTPS, Gopher, HTTP, HTTPS, IMAP, IMAPS, LDAP, LDAPS, POP3, POP3S, RTMP, RTSP, SCP, SFTP, SMTP, SMTPS, Telnet and TFTP. libcurl supports SSL certificates, HTTP POST, HTTP PUT, FTP uploading, HTTP form based upload, proxies, cookies, user+password authentication (Basic, Digest, NTLM, Negotiate, Kerberos), file transfer resume, http proxy tunneling and more. | -| [cairo](https://cairographics.org) | 1.18.4 | vis | Cairo is a 2D graphics library with support for multiple output devices. Currently supported output targets include the X Window System (via both Xlib and XCB), Quartz, Win32, image buffers, PostScript, PDF, and SVG file output. Experimental backends include OpenGL, BeOS, OS/2, and DirectFB | -| [cairo](https://cairographics.org) | 1.18.4 | vis | Cairo is a 2D graphics library with support for multiple output devices. Currently supported output targets include the X Window System (via both Xlib and XCB), Quartz, Win32, image buffers, PostScript, PDF, and SVG file output. Experimental backends include OpenGL, BeOS, OS/2, and DirectFB | -| [cargo-c](https://github.com/lu-zero/cargo-c) | 0.10.13 | tools | Applet for cargo to build and install C-ABI compatible dynamic and static libraries. It produces and installs a correct pkg-config file, a static library and a dynamic library, and a C header to be used by any C (and C-compatible) software. | -| [cargo-c](https://github.com/lu-zero/cargo-c) | 0.10.13 | tools | Applet for cargo to build and install C-ABI compatible dynamic and static libraries. It produces and installs a correct pkg-config file, a static library and a dynamic library, and a C header to be used by any C (and C-compatible) software. | -| [cffi](https://cffi.readthedocs.io/en/latest/) | 1.17.1 | tools | C Foreign Function Interface for Python. Interact with almost any C code from Python, based on C-like declarations that you can often copy-paste from header files or documentation. | -| [cffi](https://cffi.readthedocs.io/en/latest/) | 1.17.1 | tools | C Foreign Function Interface for Python. Interact with almost any C code from Python, based on C-like declarations that you can often copy-paste from header files or documentation. | -| [conan](https://conan.io) | 1.66.0 | devel | Decentralized, open-source (MIT), C/C++ package manager. | -| [conan](https://conan.io) | 1.66.0 | devel | Decentralized, open-source (MIT), C/C++ package manager. | -| [configurable-http-proxy](https://github.com/jupyterhub/configurable-http-proxy) | 5.0.1 | tools | HTTP proxy for node.js including a REST API for updating the routing table. Developed as a part of the Jupyter Hub multi-user server. | -| [configurable-http-proxy](https://github.com/jupyterhub/configurable-http-proxy) | 5.0.1 | tools | HTTP proxy for node.js including a REST API for updating the routing table. Developed as a part of the Jupyter Hub multi-user server. | -| [cooler](https://open2c.github.io/cooler) | 0.10.4 | bio | Cooler is a support library for a storage format, also called cooler, used to store genomic interaction data of any size, such as Hi-C contact matrices. | -| [cooler](https://open2c.github.io/cooler) | 0.10.4 | bio | Cooler is a support library for a storage format, also called cooler, used to store genomic interaction data of any size, such as Hi-C contact matrices. | -| [cppy](https://github.com/nucleic/cppy) | 1.3.1 | tools | A small C++ header library which makes it easier to write Python extension modules. The primary feature is a PyObject smart pointer which automatically handles reference counting and provides convenience methods for performing common object operations. | -| [cppy](https://github.com/nucleic/cppy) | 1.3.1 | tools | A small C++ header library which makes it easier to write Python extension modules. The primary feature is a PyObject smart pointer which automatically handles reference counting and provides convenience methods for performing common object operations. | -| [cryptography](https://github.com/pyca/cryptography) | 44.0.2 | tools | cryptography is a package designed to expose cryptographic primitives and recipes to Python developers. | -| [cryptography](https://github.com/pyca/cryptography) | 44.0.2 | tools | cryptography is a package designed to expose cryptographic primitives and recipes to Python developers. | -| [cuDNN](https://developer.nvidia.com/cudnn) | 9.10.1.4 | numlib | The NVIDIA CUDA Deep Neural Network library (cuDNN) is a GPU-accelerated library of primitives for deep neural networks. | -| [cuDNN](https://developer.nvidia.com/cudnn) | 9.10.1.4 | numlib | The NVIDIA CUDA Deep Neural Network library (cuDNN) is a GPU-accelerated library of primitives for deep neural networks. | -| [cuQuantum-Python](https://developer.nvidia.com/cuquantum-sdk) | 25.11.0.7 | devel | NVIDIA cuQuantum is an SDK of optimized libraries and tools for accelerating quantum computing workflows. With NVIDIA Tensor Core GPUs, developers can use cuQuantum to speed up quantum circuit simulations based on state vector and tensor network methods by orders of magnitude. | -| [cuQuantum-Python](https://developer.nvidia.com/cuquantum-sdk) | 25.11.0.7 | devel | NVIDIA cuQuantum is an SDK of optimized libraries and tools for accelerating quantum computing workflows. With NVIDIA Tensor Core GPUs, developers can use cuQuantum to speed up quantum circuit simulations based on state vector and tensor network methods by orders of magnitude. | -| [cuQuantum](https://developer.nvidia.com/cuquantum-sdk) | 25.03.0.11 | lib | NVIDIA cuQuantum is an SDK of libraries and tools for quantum computing workflows. | -| [cuQuantum](https://developer.nvidia.com/cuquantum-sdk) | 25.03.0.11 | lib | NVIDIA cuQuantum is an SDK of libraries and tools for quantum computing workflows. | -| [cuQuantum](https://developer.nvidia.com/cuquantum-sdk) | 25.11.0.7 | lib | NVIDIA cuQuantum is an SDK of libraries and tools for quantum computing workflows. | -| [cuQuantum](https://developer.nvidia.com/cuquantum-sdk) | 25.11.0.7 | lib | NVIDIA cuQuantum is an SDK of libraries and tools for quantum computing workflows. | -| [cuSPARSELt](https://docs.nvidia.com/cuda/cusparselt/index.html) | 0.7.1.0 | lib | NVIDIA cuSPARSELt is a high-performance CUDA library dedicated to general matrix-matrix operations in which at least one operand is a sparse matrix | -| [cuSPARSELt](https://docs.nvidia.com/cuda/cusparselt/index.html) | 0.7.1.0 | lib | NVIDIA cuSPARSELt is a high-performance CUDA library dedicated to general matrix-matrix operations in which at least one operand is a sparse matrix | -| [cuTENSOR](https://developer.nvidia.com/cutensor) | 2.0.2.5 | lib | The cuTENSOR Library is a GPU-accelerated tensor linear algebra library providing tensor contraction, reduction and elementwise operations. | -| [cuTENSOR](https://developer.nvidia.com/cutensor) | 2.0.2.5 | lib | The cuTENSOR Library is a GPU-accelerated tensor linear algebra library providing tensor contraction, reduction and elementwise operations. | -| [dask-labextension](https://github.com/dask/dask-labextension) | 7.0.0 | tools | This package provides a JupyterLab extension to manage Dask clusters, as well as embed Dask's dashboard plots directly into JupyterLab panes. | -| [dask-labextension](https://github.com/dask/dask-labextension) | 7.0.0 | tools | This package provides a JupyterLab extension to manage Dask clusters, as well as embed Dask's dashboard plots directly into JupyterLab panes. | -| [dask](https://dask.org/) | 2025.5.1 | data | Dask natively scales Python. Dask provides advanced parallelism for analytics, enabling performance at scale for the tools you love. | -| [dask](https://dask.org/) | 2025.5.1 | data | Dask natively scales Python. Dask provides advanced parallelism for analytics, enabling performance at scale for the tools you love. | -| [dill](https://pypi.org/project/dill/) | 0.4.0 | data | dill extends python's pickle module for serializing and de-serializing python objects to the majority of the built-in python types. Serialization is the process of converting an object to a byte stream, and the inverse of which is converting a byte stream back to on python object hierarchy. | -| [dill](https://pypi.org/project/dill/) | 0.4.0 | data | dill extends python's pickle module for serializing and de-serializing python objects to the majority of the built-in python types. Serialization is the process of converting an object to a byte stream, and the inverse of which is converting a byte stream back to on python object hierarchy. | -| [dlb](https://pm.bsc.es/dlb/) | 3.5.3 | lib | DLB is a dynamic library designed to speed up HPC hybrid applications (i.e., two levels of parallelism) by improving the load balance of the outer level of parallelism (e.g., MPI) by dynamically redistributing the computational resources at the inner level of parallelism (e.g., OpenMP). at run time. | -| [dlb](https://pm.bsc.es/dlb/) | 3.5.3 | lib | DLB is a dynamic library designed to speed up HPC hybrid applications (i.e., two levels of parallelism) by improving the load balance of the outer level of parallelism (e.g., MPI) by dynamically redistributing the computational resources at the inner level of parallelism (e.g., OpenMP). at run time. | -| [dlb](https://pm.bsc.es/dlb/) | 3.5.3 | lib | DLB is a dynamic library designed to speed up HPC hybrid applications (i.e., two levels of parallelism) by improving the load balance of the outer level of parallelism (e.g., MPI) by dynamically redistributing the computational resources at the inner level of parallelism (e.g., OpenMP). at run time. | -| [dlb](https://pm.bsc.es/dlb/) | 3.5.3 | lib | DLB is a dynamic library designed to speed up HPC hybrid applications (i.e., two levels of parallelism) by improving the load balance of the outer level of parallelism (e.g., MPI) by dynamically redistributing the computational resources at the inner level of parallelism (e.g., OpenMP). at run time. | -| [double-conversion](https://github.com/google/double-conversion) | 3.3.1 | lib | Efficient binary-decimal and decimal-binary conversion routines for IEEE doubles. | -| [double-conversion](https://github.com/google/double-conversion) | 3.3.1 | lib | Efficient binary-decimal and decimal-binary conversion routines for IEEE doubles. | -| [dtcmp](https://github.com/LLNL/dtcmp) | 1.1.5 | lib | The Datatype Comparison (DTCMP) Library provides pre-defined and user-defined comparison operations to compare the values of two items which can be arbitrary MPI datatypes. Using these comparison operations, the library provides various routines for manipulating data, which may be distributed over the processes of an MPI communicator. | -| [dtcmp](https://github.com/LLNL/dtcmp) | 1.1.5 | lib | The Datatype Comparison (DTCMP) Library provides pre-defined and user-defined comparison operations to compare the values of two items which can be arbitrary MPI datatypes. Using these comparison operations, the library provides various routines for manipulating data, which may be distributed over the processes of an MPI communicator. | -| [elbencho](https://github.com/breuner/elbencho) | 3.0-35 | tools | A distributed storage benchmark for files, objects & blocks with support for GPUs | -| [elbencho](https://github.com/breuner/elbencho) | 3.0-35 | tools | A distributed storage benchmark for files, objects & blocks with support for GPUs | -| [elfutils](https://elfutils.org/) | 0.193 | lib | The elfutils project provides libraries and tools for ELF files and DWARF data. | -| [elfutils](https://elfutils.org/) | 0.193 | lib | The elfutils project provides libraries and tools for ELF files and DWARF data. | -| [expat](https://libexpat.github.io) | 2.6.4 | tools | Expat is an XML parser library written in C. It is a stream-oriented parser in which an application registers handlers for things the parser might find in the XML document (like start tags). | -| [expat](https://libexpat.github.io) | 2.6.4 | tools | Expat is an XML parser library written in C. It is a stream-oriented parser in which an application registers handlers for things the parser might find in the XML document (like start tags). | -| [expecttest](https://github.com/ezyang/expecttest) | 0.2.1 | tools | This library implements expect tests (also known as "golden" tests). Expect tests are a method of writing tests where instead of hard-coding the expected output of a test, you run the test to get the output, and the test framework automatically populates the expected output. If the output of the test changes, you can rerun the test with the environment variable EXPECTTEST_ACCEPT=1 to automatically update the expected output. | -| [expecttest](https://github.com/ezyang/expecttest) | 0.2.1 | tools | This library implements expect tests (also known as "golden" tests). Expect tests are a method of writing tests where instead of hard-coding the expected output of a test, you run the test to get the output, and the test framework automatically populates the expected output. If the output of the test changes, you can rerun the test with the environment variable EXPECTTEST_ACCEPT=1 to automatically update the expected output. | -| [ffnvcodec](https://git.videolan.org/?p=ffmpeg/nv-codec-headers.git) | 13.0.19.0 | lib | FFmpeg nvidia headers. Adds support for nvenc and nvdec. Requires Nvidia GPU and drivers to be present (picked up dynamically). | -| [ffnvcodec](https://git.videolan.org/?p=ffmpeg/nv-codec-headers.git) | 13.0.19.0 | lib | FFmpeg nvidia headers. Adds support for nvenc and nvdec. Requires Nvidia GPU and drivers to be present (picked up dynamically). | -| [flatbuffers-python](https://github.com/google/flatbuffers/) | 25.2.10 | devel | Python Flatbuffers runtime library. | -| [flatbuffers-python](https://github.com/google/flatbuffers/) | 25.2.10 | devel | Python Flatbuffers runtime library. | -| [flatbuffers](https://github.com/google/flatbuffers/) | 25.2.10 | devel | FlatBuffers: Memory Efficient Serialization Library | -| [flatbuffers](https://github.com/google/flatbuffers/) | 25.2.10 | devel | FlatBuffers: Memory Efficient Serialization Library | -| [flex](http://flex.sourceforge.net/) | 2.6.4 | lang | Flex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner, sometimes called a tokenizer, is a program which recognizes lexical patterns in text. | -| [flex](http://flex.sourceforge.net/) | 2.6.4 | lang | Flex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner, sometimes called a tokenizer, is a program which recognizes lexical patterns in text. | -| [flex](https://github.com/westes/flex) | 2.6.4 | lang | Flex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner, sometimes called a tokenizer, is a program which recognizes lexical patterns in text. | -| [flex](https://github.com/westes/flex) | 2.6.4 | lang | Flex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner, sometimes called a tokenizer, is a program which recognizes lexical patterns in text. | -| [flit](https://github.com/pypa/flit) | 3.10.1 | tools | A simple packaging tool for simple packages. | -| [flit](https://github.com/pypa/flit) | 3.10.1 | tools | A simple packaging tool for simple packages. | -| [fontconfig](https://www.freedesktop.org/wiki/Software/fontconfig/) | 2.16.2 | vis | Fontconfig is a library designed to provide system-wide font configuration, customization and application access. | -| [fontconfig](https://www.freedesktop.org/wiki/Software/fontconfig/) | 2.16.2 | vis | Fontconfig is a library designed to provide system-wide font configuration, customization and application access. | -| [fonttools](https://python-markdown.github.io/) | 4.58.4 | devel | fontTools is a library for manipulating fonts, written in Python. The project includes the TTX tool, that can convert TrueType and OpenType fonts to and from an XML text format, which is also called TTX. It supports TrueType, OpenType, AFM and to an extent Type 1 and some Mac-specific formats. | -| [fonttools](https://python-markdown.github.io/) | 4.58.4 | devel | fontTools is a library for manipulating fonts, written in Python. The project includes the TTX tool, that can convert TrueType and OpenType fonts to and from an XML text format, which is also called TTX. It supports TrueType, OpenType, AFM and to an extent Type 1 and some Mac-specific formats. | -| [foss](https://easybuild.readthedocs.io/en/master/Common-toolchains.html#foss-toolchain) | 2025a | toolchain | GNU Compiler Collection (GCC) based compiler toolchain, including OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK. | -| [foss](https://easybuild.readthedocs.io/en/master/Common-toolchains.html#foss-toolchain) | 2025a | toolchain | GNU Compiler Collection (GCC) based compiler toolchain, including OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK. | -| [freetype](https://www.freetype.org) | 2.13.3 | vis | FreeType 2 is a software font engine that is designed to be small, efficient, highly customizable, and portable while capable of producing high-quality output (glyph images). It can be used in graphics libraries, display servers, font conversion tools, text image generation tools, and many other products as well. | -| [freetype](https://www.freetype.org) | 2.13.3 | vis | FreeType 2 is a software font engine that is designed to be small, efficient, highly customizable, and portable while capable of producing high-quality output (glyph images). It can be used in graphics libraries, display servers, font conversion tools, text image generation tools, and many other products as well. | -| [fuse-overlayfs](https://github.com/containers/fuse-overlayfs) | 1.16 | tools | fuse-overlayfs is a FUSE-based implementation of overlayfs, allowing unprivileged users to create overlay filesystems. Built against system fuse3-devel. | -| [fuse-overlayfs](https://github.com/containers/fuse-overlayfs) | 1.16 | tools | fuse-overlayfs is a FUSE-based implementation of overlayfs, allowing unprivileged users to create overlay filesystems. Built against system fuse3-devel. | -| [geopandas](https://geopandas.org) | 1.1.1 | geo | GeoPandas is a project to add support for geographic data to pandas objects. It currently implements GeoSeries and GeoDataFrame types which are subclasses of pandas.Series and pandas.DataFrame respectively. GeoPandas objects can act on shapely geometry objects and perform geometric operations. | -| [geopandas](https://geopandas.org) | 1.1.1 | geo | GeoPandas is a project to add support for geographic data to pandas objects. It currently implements GeoSeries and GeoDataFrame types which are subclasses of pandas.Series and pandas.DataFrame respectively. GeoPandas objects can act on shapely geometry objects and perform geometric operations. | -| [gettext](https://www.gnu.org/software/gettext/) | 0.22.5 | tools | GNU 'gettext' is an important step for the GNU Translation Project, as it is an asset on which we may build many other steps. This package offers to programmers, translators, and even users, a well integrated set of tools and documentation | -| [gettext](https://www.gnu.org/software/gettext/) | 0.22.5 | tools | GNU 'gettext' is an important step for the GNU Translation Project, as it is an asset on which we may build many other steps. This package offers to programmers, translators, and even users, a well integrated set of tools and documentation | -| [gettext](https://www.gnu.org/software/gettext/) | 0.24 | tools | GNU 'gettext' is an important step for the GNU Translation Project, as it is an asset on which we may build many other steps. This package offers to programmers, translators, and even users, a well integrated set of tools and documentation | -| [gettext](https://www.gnu.org/software/gettext/) | 0.24 | tools | GNU 'gettext' is an important step for the GNU Translation Project, as it is an asset on which we may build many other steps. This package offers to programmers, translators, and even users, a well integrated set of tools and documentation | -| [gettext](https://www.gnu.org/software/gettext/) | 0.25 | tools | GNU 'gettext' is an important step for the GNU Translation Project, as it is an asset on which we may build many other steps. This package offers to programmers, translators, and even users, a well integrated set of tools and documentation | -| [gettext](https://www.gnu.org/software/gettext/) | 0.25 | tools | GNU 'gettext' is an important step for the GNU Translation Project, as it is an asset on which we may build many other steps. This package offers to programmers, translators, and even users, a well integrated set of tools and documentation | -| [gfbf]((none)) | 2025a | toolchain | GNU Compiler Collection (GCC) based compiler toolchain, including FlexiBLAS (BLAS and LAPACK support) and (serial) FFTW. | -| [gfbf]((none)) | 2025a | toolchain | GNU Compiler Collection (GCC) based compiler toolchain, including FlexiBLAS (BLAS and LAPACK support) and (serial) FFTW. | -| [giflib](http://giflib.sourceforge.net/) | 5.2.2 | lib | giflib is a library for reading and writing gif images. It is API and ABI compatible with libungif which was in wide use while the LZW compression algorithm was patented. | -| [giflib](http://giflib.sourceforge.net/) | 5.2.2 | lib | giflib is a library for reading and writing gif images. It is API and ABI compatible with libungif which was in wide use while the LZW compression algorithm was patented. | -| [git-lfs](https://git-lfs.github.com) | 3.6.1 | tools | Git Large File Storage (LFS) replaces large files such as audio samples, videos, datasets, and graphics with text pointers inside Git, while storing the file contents on a remote server like GitHub.com | -| [git-lfs](https://git-lfs.github.com) | 3.6.1 | tools | Git Large File Storage (LFS) replaces large files such as audio samples, videos, datasets, and graphics with text pointers inside Git, while storing the file contents on a remote server like GitHub.com | -| [git](https://git-scm.com) | 2.49.0 | tools | Git is a free and open source distributed version control system designed to handle everything from small to very large projects with speed and efficiency. | -| [git](https://git-scm.com) | 2.49.0 | tools | Git is a free and open source distributed version control system designed to handle everything from small to very large projects with speed and efficiency. | -| [glslang-SPIRV](https://www.khronos.org/opengles/sdk/tools/Reference-Compiler/) | 15.3.0 | compiler | Glslang is the official reference compiler front end for the OpenGL ES and OpenGL shading languages. It implements a strict interpretation of the specifications for these languages. It is open and free for anyone to use, either from a command line or programmatically. The OpenGL and OpenGL ES working groups are committed to maintaining consistency between the reference compiler and the corresponding shading language specifications. | -| [glslang-SPIRV](https://www.khronos.org/opengles/sdk/tools/Reference-Compiler/) | 15.3.0 | compiler | Glslang is the official reference compiler front end for the OpenGL ES and OpenGL shading languages. It implements a strict interpretation of the specifications for these languages. It is open and free for anyone to use, either from a command line or programmatically. The OpenGL and OpenGL ES working groups are committed to maintaining consistency between the reference compiler and the corresponding shading language specifications. | -| [gmpy2](https://github.com/aleaxit/gmpy) | 2.2.0 | math | GMP/MPIR, MPFR, and MPC interface to Python 2.6+ and 3.x | -| [gmpy2](https://github.com/aleaxit/gmpy) | 2.2.0 | math | GMP/MPIR, MPFR, and MPC interface to Python 2.6+ and 3.x | -| [gnuplot](http://gnuplot.sourceforge.net) | 6.0.3 | vis | Portable interactive, function plotting utility | -| [gnuplot](http://gnuplot.sourceforge.net) | 6.0.3 | vis | Portable interactive, function plotting utility | -| [gocryptfs](https://github.com/rfjakob/gocryptfs/) | 2.6.1 | lib | Squashfuse lets you mount SquashFS archives in user-space. It supports almost all features of the SquashFS format, yet is still fast and memory-efficient. So that everyone can use it, squashfuse supports many different operating systems #and is available under a permissing license. SquashFS is an efficiently compressed, read-only storage format. Support for it has been built into the Linux kernel since 2009. It is very common on Live CDs and embedded Linux distributions. | -| [gocryptfs](https://github.com/rfjakob/gocryptfs/) | 2.6.1 | lib | Squashfuse lets you mount SquashFS archives in user-space. It supports almost all features of the SquashFS format, yet is still fast and memory-efficient. So that everyone can use it, squashfuse supports many different operating systems #and is available under a permissing license. SquashFS is an efficiently compressed, read-only storage format. Support for it has been built into the Linux kernel since 2009. It is very common on Live CDs and embedded Linux distributions. | -| [gompi]((none)) | 2025a | toolchain | GNU Compiler Collection (GCC) based compiler toolchain, including OpenMPI for MPI support. | -| [gompi]((none)) | 2025a | toolchain | GNU Compiler Collection (GCC) based compiler toolchain, including OpenMPI for MPI support. | -| [googleapis-python](https://googleapis.github.io) | 2025.03 | tools | Clients and tools for Google APIs in Python | -| [googleapis-python](https://googleapis.github.io) | 2025.03 | tools | Clients and tools for Google APIs in Python | -| [googlebenchmark](https://github.com/google/benchmark) | 1.9.4 | tools | Google's framework for writing C++ tests on a variety of platforms | -| [googlebenchmark](https://github.com/google/benchmark) | 1.9.4 | tools | Google's framework for writing C++ tests on a variety of platforms | -| [googletest](https://github.com/google/googletest) | 1.17.0 | tools | Google's framework for writing C++ tests on a variety of platforms | -| [googletest](https://github.com/google/googletest) | 1.17.0 | tools | Google's framework for writing C++ tests on a variety of platforms | -| [gperf](https://www.gnu.org/software/gperf/) | 3.3 | devel | GNU gperf is a perfect hash function generator. For a given list of strings, it produces a hash function and hash table, in form of C or C++ code, for looking up a value depending on the input string. The hash function is perfect, which means that the hash table has no collisions, and the hash table lookup needs a single string comparison only. | -| [gperf](https://www.gnu.org/software/gperf/) | 3.3 | devel | GNU gperf is a perfect hash function generator. For a given list of strings, it produces a hash function and hash table, in form of C or C++ code, for looking up a value depending on the input string. The hash function is perfect, which means that the hash table has no collisions, and the hash table lookup needs a single string comparison only. | -| [gperftools](https://github.com/gperftools/gperftools) | 2.16 | tools | gperftools is a collection of a high-performance multi-threaded malloc() implementation, plus some pretty nifty performance analysis tools. Includes TCMalloc, heap-checker, heap-profiler and cpu-profiler. | -| [gperftools](https://github.com/gperftools/gperftools) | 2.16 | tools | gperftools is a collection of a high-performance multi-threaded malloc() implementation, plus some pretty nifty performance analysis tools. Includes TCMalloc, heap-checker, heap-profiler and cpu-profiler. | -| [graphite2](https://scripts.sil.org/cms/scripts/page.php?site_id=projects&item_id=graphite_home) | 1.3.14 | lib | Graphite is a "smart font" system developed specifically to handle the complexities of lesser-known languages of the world. | -| [graphite2](https://scripts.sil.org/cms/scripts/page.php?site_id=projects&item_id=graphite_home) | 1.3.14 | lib | Graphite is a "smart font" system developed specifically to handle the complexities of lesser-known languages of the world. | -| [groff](https://www.gnu.org/software/groff) | 1.23.0 | tools | Groff (GNU troff) is a typesetting system that reads plain text mixed with formatting commands and produces formatted output. | -| [groff](https://www.gnu.org/software/groff) | 1.23.0 | tools | Groff (GNU troff) is a typesetting system that reads plain text mixed with formatting commands and produces formatted output. | -| [gzip](https://www.gnu.org/software/gzip/) | 1.13 | tools | gzip (GNU zip) is a popular data compression program as a replacement for compress | -| [gzip](https://www.gnu.org/software/gzip/) | 1.13 | tools | gzip (GNU zip) is a popular data compression program as a replacement for compress | -| [h5py](https://www.h5py.org/) | 3.14.0 | data | HDF5 for Python (h5py) is a general-purpose Python interface to the Hierarchical Data Format library, version 5. HDF5 is a versatile, mature scientific software library designed for the fast, flexible storage of enormous amounts of data. | -| [h5py](https://www.h5py.org/) | 3.14.0 | data | HDF5 for Python (h5py) is a general-purpose Python interface to the Hierarchical Data Format library, version 5. HDF5 is a versatile, mature scientific software library designed for the fast, flexible storage of enormous amounts of data. | -| [hatch-jupyter-builder](https://hatch-jupyter-builder.readthedocs.io) | 0.9.1 | tools | Hatch Jupyter Builder is a plugin for the hatchling Python build backend. It is primarily targeted for package authors who are providing JavaScript as part of their Python packages. Typical use cases are Jupyter Lab Extensions and Jupyter Widgets. | -| [hatch-jupyter-builder](https://hatch-jupyter-builder.readthedocs.io) | 0.9.1 | tools | Hatch Jupyter Builder is a plugin for the hatchling Python build backend. It is primarily targeted for package authors who are providing JavaScript as part of their Python packages. Typical use cases are Jupyter Lab Extensions and Jupyter Widgets. | -| [hatchling](https://hatch.pypa.io) | 1.27.0 | tools | Extensible, standards compliant build backend used by Hatch, a modern, extensible Python project manager. | -| [hatchling](https://hatch.pypa.io) | 1.27.0 | tools | Extensible, standards compliant build backend used by Hatch, a modern, extensible Python project manager. | -| [help2man](https://www.gnu.org/software/help2man/) | 1.49.3 | tools | help2man produces simple manual pages from the '--help' and '--version' output of other commands. | -| [help2man](https://www.gnu.org/software/help2man/) | 1.49.3 | tools | help2man produces simple manual pages from the '--help' and '--version' output of other commands. | -| [hwloc-CUDA](https://www.open-mpi.org/projects/hwloc/) | 2.11.2 | system | The Portable Hardware Locality (hwloc) software package provides a portable abstraction (across OS, versions, architectures, ...) of the hierarchical topology of modern architectures, including NUMA memory nodes, sockets, shared caches, cores and simultaneous multithreading. It also gathers various system attributes such as cache and memory information as well as the locality of I/O devices such as network interfaces, InfiniBand HCAs or GPUs. It primarily aims at helping applications with gathering information about modern computing hardware so as to exploit it accordingly and efficiently. This provides the CUDA and NVML plugins for hwloc | -| [hwloc-CUDA](https://www.open-mpi.org/projects/hwloc/) | 2.11.2 | system | The Portable Hardware Locality (hwloc) software package provides a portable abstraction (across OS, versions, architectures, ...) of the hierarchical topology of modern architectures, including NUMA memory nodes, sockets, shared caches, cores and simultaneous multithreading. It also gathers various system attributes such as cache and memory information as well as the locality of I/O devices such as network interfaces, InfiniBand HCAs or GPUs. It primarily aims at helping applications with gathering information about modern computing hardware so as to exploit it accordingly and efficiently. This provides the CUDA and NVML plugins for hwloc | -| [hwloc](https://www.open-mpi.org/projects/hwloc/) | 2.11.2 | system | The Portable Hardware Locality (hwloc) software package provides a portable abstraction (across OS, versions, architectures, ...) of the hierarchical topology of modern architectures, including NUMA memory nodes, sockets, shared caches, cores and simultaneous multithreading. It also gathers various system attributes such as cache and memory information as well as the locality of I/O devices such as network interfaces, InfiniBand HCAs or GPUs. It primarily aims at helping applications with gathering information about modern computing hardware so as to exploit it accordingly and efficiently. | -| [hwloc](https://www.open-mpi.org/projects/hwloc/) | 2.11.2 | system | The Portable Hardware Locality (hwloc) software package provides a portable abstraction (across OS, versions, architectures, ...) of the hierarchical topology of modern architectures, including NUMA memory nodes, sockets, shared caches, cores and simultaneous multithreading. It also gathers various system attributes such as cache and memory information as well as the locality of I/O devices such as network interfaces, InfiniBand HCAs or GPUs. It primarily aims at helping applications with gathering information about modern computing hardware so as to exploit it accordingly and efficiently. | -| [hypothesis](https://github.com/HypothesisWorks/hypothesis) | 6.133.2 | tools | Hypothesis is an advanced testing library for Python. It lets you write tests which are parametrized by a source of examples, and then generates simple and comprehensible examples that make your tests fail. This lets you find more bugs in your code with less work. | -| [hypothesis](https://github.com/HypothesisWorks/hypothesis) | 6.133.2 | tools | Hypothesis is an advanced testing library for Python. It lets you write tests which are parametrized by a source of examples, and then generates simple and comprehensible examples that make your tests fail. This lets you find more bugs in your code with less work. | -| [ifpgasdk](https://www.intel.com/content/www/us/en/software/programmable/sdk-for-opencl/overview.html) | 20.4 | tools | Intel FPGA SDK for OpenCL software technology is a development environment that enables software developers to accelerate their applications by targeting heterogeneous platforms with Intel CPUs and FPGAs. This environment combines Intel’s state-of-the-art software development frameworks and compiler technology with the revolutionary, new Intel® Quartus® Prime Software to deliver next generation development environment that abstracts FPGA details while delivering optimized results. Intel® FPGA SDK for OpenCL™ software technology enables you to fully leverage the unique capabilities of FPGAs to deliver acceleration performance with power efficiency and low latency. | -| [ifpgasdk](https://www.intel.com/content/www/us/en/software/programmable/sdk-for-opencl/overview.html) | 20.4 | tools | Intel FPGA SDK for OpenCL software technology is a development environment that enables software developers to accelerate their applications by targeting heterogeneous platforms with Intel CPUs and FPGAs. This environment combines Intel’s state-of-the-art software development frameworks and compiler technology with the revolutionary, new Intel® Quartus® Prime Software to deliver next generation development environment that abstracts FPGA details while delivering optimized results. Intel® FPGA SDK for OpenCL™ software technology enables you to fully leverage the unique capabilities of FPGAs to deliver acceleration performance with power efficiency and low latency. | -| [iimpi](https://software.intel.com/parallel-studio-xe) | 2025a | toolchain | Intel C/C++ and Fortran compilers, alongside Intel MPI. | -| [iimpi](https://software.intel.com/parallel-studio-xe) | 2025a | toolchain | Intel C/C++ and Fortran compilers, alongside Intel MPI. | -| [imageio](https://imageio.github.io) | 2.37.0 | vis | Imageio is a Python library that provides an easy interface to read and write a wide range of image data, including animated images, video, volumetric data, and scientific formats. | -| [imageio](https://imageio.github.io) | 2.37.0 | vis | Imageio is a Python library that provides an easy interface to read and write a wide range of image data, including animated images, video, volumetric data, and scientific formats. | -| [imkl-FFTW](https://software.intel.com/content/www/us/en/develop/tools/oneapi/components/onemkl.html) | 2025.1.0 | numlib | FFTW interfaces using Intel oneAPI Math Kernel Library | -| [imkl-FFTW](https://software.intel.com/content/www/us/en/develop/tools/oneapi/components/onemkl.html) | 2025.1.0 | numlib | FFTW interfaces using Intel oneAPI Math Kernel Library | -| [imkl](https://software.intel.com/content/www/us/en/develop/tools/oneapi/components/onemkl.html) | 2025.1.0 | numlib | Intel oneAPI Math Kernel Library | -| [imkl](https://software.intel.com/content/www/us/en/develop/tools/oneapi/components/onemkl.html) | 2025.1.0 | numlib | Intel oneAPI Math Kernel Library | -| [impi](https://software.intel.com/content/www/us/en/develop/tools/mpi-library.html) | 2021.15.0 | mpi | Intel MPI Library, compatible with MPICH ABI | -| [impi](https://software.intel.com/content/www/us/en/develop/tools/mpi-library.html) | 2021.15.0 | mpi | Intel MPI Library, compatible with MPICH ABI | -| [intel-compilers](https://software.intel.com/content/www/us/en/develop/tools/oneapi/hpc-toolkit.html) | 2025.1.1 | compiler | Intel C, C++ & Fortran compilers | -| [intel-compilers](https://software.intel.com/content/www/us/en/develop/tools/oneapi/hpc-toolkit.html) | 2025.1.1 | compiler | Intel C, C++ & Fortran compilers | -| [intel-oneapi](https://software.intel.com/content/www/us/en/develop/tools/oneapi/hpc-toolkit.html) | 2024.2.1 | compiler | Intel C, C++ & Fortran compilers (classic and oneAPI) | -| [intel-oneapi](https://software.intel.com/content/www/us/en/develop/tools/oneapi/hpc-toolkit.html) | 2024.2.1 | compiler | Intel C, C++ & Fortran compilers (classic and oneAPI) | -| [intel](https://docs.easybuild.io/common-toolchains/#common_toolchains_overview_intel) | 2025a | toolchain | Compiler toolchain including Intel compilers, Intel MPI and Intel Math Kernel Library (MKL). | -| [intel](https://docs.easybuild.io/common-toolchains/#common_toolchains_overview_intel) | 2025a | toolchain | Compiler toolchain including Intel compilers, Intel MPI and Intel Math Kernel Library (MKL). | -| [intltool](https://freedesktop.org/wiki/Software/intltool/) | 0.51.0 | devel | intltool is a set of tools to centralize translation of many different file formats using GNU gettext-compatible PO files. | -| [intltool](https://freedesktop.org/wiki/Software/intltool/) | 0.51.0 | devel | intltool is a set of tools to centralize translation of many different file formats using GNU gettext-compatible PO files. | -| [iperf](https://software.es.net/iperf) | 3.17.1 | tools | iperf is a tool for active measurements of the maximum achievable bandwidth on IP networks. | -| [iperf](https://software.es.net/iperf) | 3.17.1 | tools | iperf is a tool for active measurements of the maximum achievable bandwidth on IP networks. | -| [jbigkit](https://www.cl.cam.ac.uk/~mgk25/jbigkit/) | 2.1 | vis | JBIG-KIT is a software implementation of the JBIG1 data compression standard (ITU-T T.82), which was designed for bi-level image data, such as scanned documents. | -| [jbigkit](https://www.cl.cam.ac.uk/~mgk25/jbigkit/) | 2.1 | vis | JBIG-KIT is a software implementation of the JBIG1 data compression standard (ITU-T T.82), which was designed for bi-level image data, such as scanned documents. | -| [jedi](https://github.com/davidhalter/jedi) | 0.19.1 | tools | Jedi - an awesome autocompletion, static analysis and refactoring library for Python. | -| [jedi](https://github.com/davidhalter/jedi) | 0.19.1 | tools | Jedi - an awesome autocompletion, static analysis and refactoring library for Python. | -| [jemalloc](https://jemalloc.net) | 5.3.0 | lib | jemalloc is a general purpose malloc(3) implementation that emphasizes fragmentation avoidance and scalable concurrency support. | -| [jemalloc](https://jemalloc.net) | 5.3.0 | lib | jemalloc is a general purpose malloc(3) implementation that emphasizes fragmentation avoidance and scalable concurrency support. | -| [jq](https://jqlang.org/) | 1.8.1 | tools | jq is a lightweight and flexible command-line JSON processor. | -| [jq](https://jqlang.org/) | 1.8.1 | tools | jq is a lightweight and flexible command-line JSON processor. | -| [json-c](https://github.com/json-c/json-c) | 0.18 | lib | JSON-C implements a reference counting object model that allows you to easily construct JSON objects in C, output them as JSON formatted strings and parse JSON formatted strings back into the C representation of JSON objects. | -| [json-c](https://github.com/json-c/json-c) | 0.18 | lib | JSON-C implements a reference counting object model that allows you to easily construct JSON objects in C, output them as JSON formatted strings and parse JSON formatted strings back into the C representation of JSON objects. | -| [jupyter-lsp](https://jupyter.org/) | 2.3.0 | tools | The Jupyter Server provides the backend (i.e. the core services, APIs, and REST endpoints) for Jupyter web applications like Jupyter notebook, JupyterLab, and Voila. | -| [jupyter-lsp](https://jupyter.org/) | 2.3.0 | tools | The Jupyter Server provides the backend (i.e. the core services, APIs, and REST endpoints) for Jupyter web applications like Jupyter notebook, JupyterLab, and Voila. | -| [jupyter-matlab-proxy](https://github.com/mathworks/jupyter-matlab-proxy) | 0.17.5 | math | MATLAB Integration for Jupyter | -| [jupyter-matlab-proxy](https://github.com/mathworks/jupyter-matlab-proxy) | 0.17.5 | math | MATLAB Integration for Jupyter | -| [jupyter-resource-usage](https://github.com/jupyter-server/jupyter-resource-usage) | 1.1.1 | tools | Jupyter Notebook Extension for monitoring your own Resource Usage (memory and/or CPU) | -| [jupyter-resource-usage](https://github.com/jupyter-server/jupyter-resource-usage) | 1.1.1 | tools | Jupyter Notebook Extension for monitoring your own Resource Usage (memory and/or CPU) | -| [jupyter-server-proxy](https://github.com/jupyterhub/jupyter-server-proxy) | 4.4.0 | tools | Jupyter Server Proxy lets you run arbitrary external processes (such as RStudio, Shiny Server, Syncthing, PostgreSQL, Code Server, etc) alongside your notebook server and provide authenticated web access to them using a path like /rstudio next to others like /lab. Alongside the python package that provides the main functionality, the JupyterLab extension (@jupyterlab/server-proxy) provides buttons in the JupyterLab launcher window to get to RStudio for example. | -| [jupyter-server-proxy](https://github.com/jupyterhub/jupyter-server-proxy) | 4.4.0 | tools | Jupyter Server Proxy lets you run arbitrary external processes (such as RStudio, Shiny Server, Syncthing, PostgreSQL, Code Server, etc) alongside your notebook server and provide authenticated web access to them using a path like /rstudio next to others like /lab. Alongside the python package that provides the main functionality, the JupyterLab extension (@jupyterlab/server-proxy) provides buttons in the JupyterLab launcher window to get to RStudio for example. | -| [jupyter-server](https://jupyter.org/) | 2.16.0 | tools | The Jupyter Server provides the backend (i.e. the core services, APIs, and REST endpoints) for Jupyter web applications like Jupyter notebook, JupyterLab, and Voila. | -| [jupyter-server](https://jupyter.org/) | 2.16.0 | tools | The Jupyter Server provides the backend (i.e. the core services, APIs, and REST endpoints) for Jupyter web applications like Jupyter notebook, JupyterLab, and Voila. | -| [jupyterlab-lsp](https://jupyter.org/) | 5.2.0 | tools | The Jupyter Server provides the backend (i.e. the core services, APIs, and REST endpoints) for Jupyter web applications like Jupyter notebook, JupyterLab, and Voila. | -| [jupyterlab-lsp](https://jupyter.org/) | 5.2.0 | tools | The Jupyter Server provides the backend (i.e. the core services, APIs, and REST endpoints) for Jupyter web applications like Jupyter notebook, JupyterLab, and Voila. | -| [jupyterlmod](https://github.com/cmd-ntrf/jupyter-lmod) | 5.2.2 | tools | Jupyter interactive notebook server extension that allows users to interact with environment modules before launching kernels. The extension uses Lmod's Python interface to accomplish module-related tasks like loading, unloading, saving collections, etc. | -| [jupyterlmod](https://github.com/cmd-ntrf/jupyter-lmod) | 5.2.2 | tools | Jupyter interactive notebook server extension that allows users to interact with environment modules before launching kernels. The extension uses Lmod's Python interface to accomplish module-related tasks like loading, unloading, saving collections, etc. | -| [jupyterlmod](https://github.com/cmd-ntrf/jupyter-lmod) | 5.3.0 | tools | Jupyter interactive notebook server extension that allows users to interact with environment modules before launching kernels. The extension uses Lmod's Python interface to accomplish module-related tasks like loading, unloading, saving collections, etc. | -| [jupyterlmod](https://github.com/cmd-ntrf/jupyter-lmod) | 5.3.0 | tools | Jupyter interactive notebook server extension that allows users to interact with environment modules before launching kernels. The extension uses Lmod's Python interface to accomplish module-related tasks like loading, unloading, saving collections, etc. | -| [jxrlib](https://github.com/4creators/jxrlib) | 2019.10.9 | lib | Open source implementation of jpegxr | -| [jxrlib](https://github.com/4creators/jxrlib) | 2019.10.9 | lib | Open source implementation of jpegxr | -| [libGLU](https://gitlab.freedesktop.org/mesa/glu) | 9.0.3 | vis | The OpenGL Utility Library (GLU) is a computer graphics library for OpenGL. | -| [libGLU](https://gitlab.freedesktop.org/mesa/glu) | 9.0.3 | vis | The OpenGL Utility Library (GLU) is a computer graphics library for OpenGL. | -| [libaio](https://pagure.io/libaio) | 0.3.113 | lib | Asynchronous input/output library that uses the kernels native interface. | -| [libaio](https://pagure.io/libaio) | 0.3.113 | lib | Asynchronous input/output library that uses the kernels native interface. | -| [libarchive](https://www.libarchive.org/) | 3.7.7 | tools | Multi-format archive and compression library | -| [libarchive](https://www.libarchive.org/) | 3.7.7 | tools | Multi-format archive and compression library | -| [libcerf](https://jugit.fz-juelich.de/mlz/libcerf) | 3.0 | math | libcerf is a self-contained numeric library that provides an efficient and accurate implementation of complex error functions, along with Dawson, Faddeeva, and Voigt functions. | -| [libcerf](https://jugit.fz-juelich.de/mlz/libcerf) | 3.0 | math | libcerf is a self-contained numeric library that provides an efficient and accurate implementation of complex error functions, along with Dawson, Faddeeva, and Voigt functions. | -| [libcircle](https://github.com/hpc/libcircle/) | 0.3 | lib | An API to provide an efficient distributed queue on a cluster. libcircle is an API for distributing embarrassingly parallel workloads using self-stabilization. | -| [libcircle](https://github.com/hpc/libcircle/) | 0.3 | lib | An API to provide an efficient distributed queue on a cluster. libcircle is an API for distributing embarrassingly parallel workloads using self-stabilization. | -| [libcroco](https://gitlab.gnome.org/Archive/libcroco) | 0.6.13 | lib | Libcroco is a standalone css2 parsing and manipulation library. | -| [libcroco](https://gitlab.gnome.org/Archive/libcroco) | 0.6.13 | lib | Libcroco is a standalone css2 parsing and manipulation library. | -| [libde265](https://github.com/strukturag/libde265) | 1.0.16 | tools | libde265 is an open source implementation of the h.265 video codec | -| [libde265](https://github.com/strukturag/libde265) | 1.0.16 | tools | libde265 is an open source implementation of the h.265 video codec | -| [libdeflate](https://github.com/ebiggers/libdeflate) | 1.24 | system | Heavily optimized library for DEFLATE/zlib/gzip compression and decompression. | -| [libdeflate](https://github.com/ebiggers/libdeflate) | 1.24 | system | Heavily optimized library for DEFLATE/zlib/gzip compression and decompression. | -| [libdrm](https://dri.freedesktop.org) | 2.4.125 | lib | Direct Rendering Manager runtime library. | -| [libdrm](https://dri.freedesktop.org) | 2.4.125 | lib | Direct Rendering Manager runtime library. | -| [libepoxy](https://github.com/anholt/libepoxy) | 1.5.10 | lib | Epoxy is a library for handling OpenGL function pointer management for you | -| [libepoxy](https://github.com/anholt/libepoxy) | 1.5.10 | lib | Epoxy is a library for handling OpenGL function pointer management for you | -| [libevent](https://libevent.org/) | 2.1.12 | lib | The libevent API provides a mechanism to execute a callback function when a specific event occurs on a file descriptor or after a timeout has been reached. Furthermore, libevent also support callbacks due to signals or regular timeouts. | -| [libevent](https://libevent.org/) | 2.1.12 | lib | The libevent API provides a mechanism to execute a callback function when a specific event occurs on a file descriptor or after a timeout has been reached. Furthermore, libevent also support callbacks due to signals or regular timeouts. | -| [libfabric](https://ofiwg.github.io/libfabric/) | 2.0.0 | lib | Libfabric is a core component of OFI. It is the library that defines and exports the user-space API of OFI, and is typically the only software that applications deal with directly. It works in conjunction with provider libraries, which are often integrated directly into libfabric. | -| [libfabric](https://ofiwg.github.io/libfabric/) | 2.0.0 | lib | Libfabric is a core component of OFI. It is the library that defines and exports the user-space API of OFI, and is typically the only software that applications deal with directly. It works in conjunction with provider libraries, which are often integrated directly into libfabric. | -| [libffi](https://sourceware.org/libffi/) | 3.4.5 | lib | The libffi library provides a portable, high level programming interface to various calling conventions. This allows a programmer to call any function specified by a call interface description at run-time. | -| [libffi](https://sourceware.org/libffi/) | 3.4.5 | lib | The libffi library provides a portable, high level programming interface to various calling conventions. This allows a programmer to call any function specified by a call interface description at run-time. | -| [libgd](https://libgd.github.io) | 2.3.3 | lib | GD is an open source code library for the dynamic creation of images by programmers. | -| [libgd](https://libgd.github.io) | 2.3.3 | lib | GD is an open source code library for the dynamic creation of images by programmers. | -| [libgeotiff](https://trac.osgeo.org/geotiff/wiki/WikiStart) | 1.7.4 | lib | Library for reading and writing coordinate system information from/to GeoTIFF files | -| [libgeotiff](https://trac.osgeo.org/geotiff/wiki/WikiStart) | 1.7.4 | lib | Library for reading and writing coordinate system information from/to GeoTIFF files | -| [libgit2](https://libgit2.org/) | 1.9.1 | devel | libgit2 is a portable, pure C implementation of the Git core methods provided as a re-entrant linkable library with a solid API, allowing you to write native speed custom Git applications in any language which supports C bindings. | -| [libgit2](https://libgit2.org/) | 1.9.1 | devel | libgit2 is a portable, pure C implementation of the Git core methods provided as a re-entrant linkable library with a solid API, allowing you to write native speed custom Git applications in any language which supports C bindings. | -| [libglvnd](https://gitlab.freedesktop.org/glvnd/libglvnd) | 1.7.0 | lib | libglvnd is a vendor-neutral dispatch layer for arbitrating OpenGL API calls between multiple vendors. | -| [libglvnd](https://gitlab.freedesktop.org/glvnd/libglvnd) | 1.7.0 | lib | libglvnd is a vendor-neutral dispatch layer for arbitrating OpenGL API calls between multiple vendors. | -| [libheif](https://github.com/strukturag/libheif) | 1.19.8 | tools | libheif is an HEIF and AVIF file format decoder and encoder | -| [libheif](https://github.com/strukturag/libheif) | 1.19.8 | tools | libheif is an HEIF and AVIF file format decoder and encoder | -| [libiconv](https://www.gnu.org/software/libiconv) | 1.18 | lib | Libiconv converts from one character encoding to another through Unicode conversion | -| [libiconv](https://www.gnu.org/software/libiconv) | 1.18 | lib | Libiconv converts from one character encoding to another through Unicode conversion | -| [libidn2](http://www.gnu.org/software/libidn2) | 2.3.7 | lib | Libidn2 implements the revised algorithm for internationalized domain names called IDNA2008/TR46. | -| [libidn2](http://www.gnu.org/software/libidn2) | 2.3.7 | lib | Libidn2 implements the revised algorithm for internationalized domain names called IDNA2008/TR46. | -| [libjpeg-turbo](https://libjpeg-turbo.org/) | 3.1.0 | lib | libjpeg-turbo is a fork of the original IJG libjpeg which uses SIMD to accelerate baseline JPEG compression and decompression. libjpeg is a library that implements JPEG image encoding, decoding and transcoding. | -| [libjpeg-turbo](https://libjpeg-turbo.org/) | 3.1.0 | lib | libjpeg-turbo is a fork of the original IJG libjpeg which uses SIMD to accelerate baseline JPEG compression and decompression. libjpeg is a library that implements JPEG image encoding, decoding and transcoding. | -| [libnsl](https://github.com/thkukuk/libnsl) | 2.0.1 | devel | The libnsl package contains the public client interface for NIS(YP). | -| [libnsl](https://github.com/thkukuk/libnsl) | 2.0.1 | devel | The libnsl package contains the public client interface for NIS(YP). | -| [libpciaccess](https://cgit.freedesktop.org/xorg/lib/libpciaccess/) | 0.18.1 | system | Generic PCI access library. | -| [libpciaccess](https://cgit.freedesktop.org/xorg/lib/libpciaccess/) | 0.18.1 | system | Generic PCI access library. | -| [libpng](https://www.libpng.org/pub/png/libpng.html) | 1.6.48 | lib | libpng is the official PNG reference library | -| [libpng](https://www.libpng.org/pub/png/libpng.html) | 1.6.48 | lib | libpng is the official PNG reference library | -| [libpsl](https://rockdaboot.github.io/libpsl) | 0.21.5 | lib | C library for the Public Suffix List | -| [libpsl](https://rockdaboot.github.io/libpsl) | 0.21.5 | lib | C library for the Public Suffix List | -| [libreadline](https://tiswww.case.edu/php/chet/readline/rltop.html) | 8.2 | lib | The GNU Readline library provides a set of functions for use by applications that allow users to edit command lines as they are typed in. Both Emacs and vi editing modes are available. The Readline library includes additional functions to maintain a list of previously-entered command lines, to recall and perhaps reedit those lines, and perform csh-like history expansion on previous commands. | -| [libreadline](https://tiswww.case.edu/php/chet/readline/rltop.html) | 8.2 | lib | The GNU Readline library provides a set of functions for use by applications that allow users to edit command lines as they are typed in. Both Emacs and vi editing modes are available. The Readline library includes additional functions to maintain a list of previously-entered command lines, to recall and perhaps reedit those lines, and perform csh-like history expansion on previous commands. | -| [librsvg](https://wiki.gnome.org/Projects/LibRsvg) | 2.61.0 | lib | Librsvg is a library to render SVG files using cairo. | -| [librsvg](https://wiki.gnome.org/Projects/LibRsvg) | 2.61.0 | lib | Librsvg is a library to render SVG files using cairo. | -| [libsodium](https://doc.libsodium.org/) | 1.0.20 | lib | Sodium is a modern, easy-to-use software library for encryption, decryption, signatures, password hashing and more. | -| [libsodium](https://doc.libsodium.org/) | 1.0.20 | lib | Sodium is a modern, easy-to-use software library for encryption, decryption, signatures, password hashing and more. | -| [libtirpc](https://sourceforge.net/projects/libtirpc/) | 1.3.6 | lib | Libtirpc is a port of Suns Transport-Independent RPC library to Linux. | -| [libtirpc](https://sourceforge.net/projects/libtirpc/) | 1.3.6 | lib | Libtirpc is a port of Suns Transport-Independent RPC library to Linux. | -| [libtool](https://www.gnu.org/software/libtool) | 2.5.4 | lib | GNU libtool is a generic library support script. Libtool hides the complexity of using shared libraries behind a consistent, portable interface. | -| [libtool](https://www.gnu.org/software/libtool) | 2.5.4 | lib | GNU libtool is a generic library support script. Libtool hides the complexity of using shared libraries behind a consistent, portable interface. | -| [libunistring](https://www.gnu.org/software/libunistring/) | 1.3 | lib | This library provides functions for manipulating Unicode strings and for manipulating C strings according to the Unicode standard. | -| [libunistring](https://www.gnu.org/software/libunistring/) | 1.3 | lib | This library provides functions for manipulating Unicode strings and for manipulating C strings according to the Unicode standard. | -| [libunwind](https://www.nongnu.org/libunwind/) | 1.8.1 | lib | The primary goal of libunwind is to define a portable and efficient C programming interface (API) to determine the call-chain of a program. The API additionally provides the means to manipulate the preserved (callee-saved) state of each call-frame and to resume execution at any point in the call-chain (non-local goto). The API supports both local (same-process) and remote (across-process) operation. As such, the API is useful in a number of applications | -| [libunwind](https://www.nongnu.org/libunwind/) | 1.8.1 | lib | The primary goal of libunwind is to define a portable and efficient C programming interface (API) to determine the call-chain of a program. The API additionally provides the means to manipulate the preserved (callee-saved) state of each call-frame and to resume execution at any point in the call-chain (non-local goto). The API supports both local (same-process) and remote (across-process) operation. As such, the API is useful in a number of applications | -| [libvori](https://brehm-research.de/libvori.php) | 220621 | lib | C++ library implementing the Voronoi integration as well as the compressed bqb file format. The present version of libvori is a very early development version, which is hard-coded to work with the CP2k program package. | -| [libvori](https://brehm-research.de/libvori.php) | 220621 | lib | C++ library implementing the Voronoi integration as well as the compressed bqb file format. The present version of libvori is a very early development version, which is hard-coded to work with the CP2k program package. | -| [libwebp](https://developers.google.com/speed/webp/) | 1.5.0 | lib | WebP is a modern image format that provides superior lossless and lossy compression for images on the web. Using WebP, webmasters and web developers can create smaller, richer images that make the web faster. | -| [libwebp](https://developers.google.com/speed/webp/) | 1.5.0 | lib | WebP is a modern image format that provides superior lossless and lossy compression for images on the web. Using WebP, webmasters and web developers can create smaller, richer images that make the web faster. | -| [libxc](https://libxc.gitlab.io) | 7.0.0 | chem | Libxc is a library of exchange-correlation functionals for density-functional theory. The aim is to provide a portable, well tested and reliable set of exchange and correlation functionals. | -| [libxc](https://libxc.gitlab.io) | 7.0.0 | chem | Libxc is a library of exchange-correlation functionals for density-functional theory. The aim is to provide a portable, well tested and reliable set of exchange and correlation functionals. | -| [libxml2](https://gitlab.gnome.org/GNOME/libxml2/-/wikis) | 2.13.4 | lib | Libxml2 is the XML C parser and toolchain developed for the Gnome project (but usable outside of the Gnome platform). | -| [libxml2](https://gitlab.gnome.org/GNOME/libxml2/-/wikis) | 2.13.4 | lib | Libxml2 is the XML C parser and toolchain developed for the Gnome project (but usable outside of the Gnome platform). | -| [libxslt](https://gitlab.gnome.org/GNOME/libxslt/-/wikis) | 1.1.42 | lib | Libxslt is the XSLT C library developed for the GNOME project (but usable outside of the Gnome platform). | -| [libxslt](https://gitlab.gnome.org/GNOME/libxslt/-/wikis) | 1.1.42 | lib | Libxslt is the XSLT C library developed for the GNOME project (but usable outside of the Gnome platform). | -| [libxsmm](https://github.com/libxsmm/libxsmm) | 1.17 | math | LIBXSMM is a library for small dense and small sparse matrix-matrix multiplications targeting Intel Architecture (x86). | -| [libxsmm](https://github.com/libxsmm/libxsmm) | 1.17 | math | LIBXSMM is a library for small dense and small sparse matrix-matrix multiplications targeting Intel Architecture (x86). | -| [libyaml](https://pyyaml.org/wiki/LibYAML) | 0.2.5 | lib | LibYAML is a YAML parser and emitter written in C. | -| [libyaml](https://pyyaml.org/wiki/LibYAML) | 0.2.5 | lib | LibYAML is a YAML parser and emitter written in C. | -| [likwid](https://github.com/RRZE-HPC/likwid) | 5.4.1 | tools | Likwid stands for Like I knew what I am doing. This project contributes easy to use command line tools for Linux to support programmers in developing high performance multi threaded programs. | -| [likwid](https://github.com/RRZE-HPC/likwid) | 5.4.1 | tools | Likwid stands for Like I knew what I am doing. This project contributes easy to use command line tools for Linux to support programmers in developing high performance multi threaded programs. | -| [lit](https://llvm.org/docs/CommandGuide/lit.html) | 18.1.8 | tools | lit is a portable tool for executing LLVM and Clang style test suites, summarizing their results, and providing indication of failures. | -| [lit](https://llvm.org/docs/CommandGuide/lit.html) | 18.1.8 | tools | lit is a portable tool for executing LLVM and Clang style test suites, summarizing their results, and providing indication of failures. | -| [lwgrp](https://github.com/LLNL/lwgrp) | 1.0.6 | lib | The light-weight group library defines data structures and collective operations to group MPI processes as an ordered set. Such groups are useful as substitutes for MPI communicators when the overhead of communicator creation is too costly. For example, certain sorting algorithms recursively divide processes into subgroups as the sort algorithm progresses. These groups may be different with each invocation, so that it is inefficient to create and destroy communicators during the sort routine. | -| [lwgrp](https://github.com/LLNL/lwgrp) | 1.0.6 | lib | The light-weight group library defines data structures and collective operations to group MPI processes as an ordered set. Such groups are useful as substitutes for MPI communicators when the overhead of communicator creation is too costly. For example, certain sorting algorithms recursively divide processes into subgroups as the sort algorithm progresses. These groups may be different with each invocation, so that it is inefficient to create and destroy communicators during the sort routine. | -| [lxml](https://lxml.de/) | 5.3.0 | lib | The lxml XML toolkit is a Pythonic binding for the C libraries libxml2 and libxslt. | -| [lxml](https://lxml.de/) | 5.3.0 | lib | The lxml XML toolkit is a Pythonic binding for the C libraries libxml2 and libxslt. | -| [lz4](https://lz4.github.io/lz4/) | 1.10.0 | lib | LZ4 is lossless compression algorithm, providing compression speed at 400 MB/s per core. It features an extremely fast decoder, with speed in multiple GB/s per core. | -| [lz4](https://lz4.github.io/lz4/) | 1.10.0 | lib | LZ4 is lossless compression algorithm, providing compression speed at 400 MB/s per core. It features an extremely fast decoder, with speed in multiple GB/s per core. | -| [magma](https://icl.cs.utk.edu/magma/) | 2.9.0 | math | The MAGMA project aims to develop a dense linear algebra library similar to LAPACK but for heterogeneous/hybrid architectures, starting with current Multicore+GPU systems. | -| [make](https://www.gnu.org/software/make/make.html) | 4.4.1 | devel | GNU version of make utility | -| [make](https://www.gnu.org/software/make/make.html) | 4.4.1 | devel | GNU version of make utility | -| [makeinfo](https://www.gnu.org/software/texinfo/) | 7.2 | devel | makeinfo is part of the Texinfo project, the official documentation format of the GNU project. | -| [makeinfo](https://www.gnu.org/software/texinfo/) | 7.2 | devel | makeinfo is part of the Texinfo project, the official documentation format of the GNU project. | -| [matlab-proxy](https://github.com/mathworks/matlab-proxy) | 0.28.1 | math | A Python package which enables you to launch MATLAB and access it from a web browser. | -| [matlab-proxy](https://github.com/mathworks/matlab-proxy) | 0.28.1 | math | A Python package which enables you to launch MATLAB and access it from a web browser. | -| [matplotlib](https://matplotlib.org) | 3.10.3 | vis | matplotlib is a python 2D plotting library which produces publication quality figures in a variety of hardcopy formats and interactive environments across platforms. matplotlib can be used in python scripts, the python and ipython shell, web application servers, and six graphical user interface toolkits. | -| [matplotlib](https://matplotlib.org) | 3.10.3 | vis | matplotlib is a python 2D plotting library which produces publication quality figures in a variety of hardcopy formats and interactive environments across platforms. matplotlib can be used in python scripts, the python and ipython shell, web application servers, and six graphical user interface toolkits. | -| [maturin](https://github.com/pyo3/maturin) | 1.8.3 | tools | This project is meant as a zero configuration replacement for setuptools-rust and milksnake. It supports building wheels for python 3.5+ on windows, linux, mac and freebsd, can upload them to pypi and has basic pypy and graalpy support. | -| [maturin](https://github.com/pyo3/maturin) | 1.8.3 | tools | This project is meant as a zero configuration replacement for setuptools-rust and milksnake. It supports building wheels for python 3.5+ on windows, linux, mac and freebsd, can upload them to pypi and has basic pypy and graalpy support. | -| [meson-python](https://github.com/mesonbuild/meson-python) | 0.18.0 | tools | Python build backend (PEP 517) for Meson projects | -| [meson-python](https://github.com/mesonbuild/meson-python) | 0.18.0 | tools | Python build backend (PEP 517) for Meson projects | -| [motif](https://motif.ics.com/) | 2.3.8 | vis | Motif refers to both a graphical user interface (GUI) specification and the widget toolkit for building applications that follow that specification under the X Window System on Unix and other POSIX-compliant systems. It was the standard toolkit for the Common Desktop Environment and thus for Unix. | -| [motif](https://motif.ics.com/) | 2.3.8 | vis | Motif refers to both a graphical user interface (GUI) specification and the widget toolkit for building applications that follow that specification under the X Window System on Unix and other POSIX-compliant systems. It was the standard toolkit for the Common Desktop Environment and thus for Unix. | -| [mpi4py](https://github.com/mpi4py/mpi4py) | 4.1.0 | lib | MPI for Python (mpi4py) provides bindings of the Message Passing Interface (MPI) standard for the Python programming language, allowing any Python program to exploit multiple processors. | -| [mpi4py](https://github.com/mpi4py/mpi4py) | 4.1.0 | lib | MPI for Python (mpi4py) provides bindings of the Message Passing Interface (MPI) standard for the Python programming language, allowing any Python program to exploit multiple processors. | -| [mpifileutils](https://hpc.github.io/mpifileutils/) | 0.12 | tools | MPI-Based File Utilities For Distributed Systems | -| [mpifileutils](https://hpc.github.io/mpifileutils/) | 0.12 | tools | MPI-Based File Utilities For Distributed Systems | -| [msisensor-pro](https://github.com/xjtu-omics/msisensor-pro/wiki) | 1.3.0 | bio | MSIsensor-pro evaluates Microsatellite Instability (MSI) for cancer patients with next generation sequencing data. It accepts the whole genome sequencing, whole exome sequencing and target region (panel) sequencing data as input. | -| [msisensor-pro](https://github.com/xjtu-omics/msisensor-pro/wiki) | 1.3.0 | bio | MSIsensor-pro evaluates Microsatellite Instability (MSI) for cancer patients with next generation sequencing data. It accepts the whole genome sequencing, whole exome sequencing and target region (panel) sequencing data as input. | -| [multiprocess](https://github.com/uqfoundation/multiprocess) | 0.70.18 | lib | better multiprocessing and multithreading in python | -| [multiprocess](https://github.com/uqfoundation/multiprocess) | 0.70.18 | lib | better multiprocessing and multithreading in python | -| [nanobind](https://github.com/wjakob/nanobind) | 2.9.2 | lang | Nanobind is a small binding library that exposes C++ types in Python and vice versa. It is reminiscent of Boost.Python and pybind11 and uses near-identical syntax. In contrast to these existing tools, nanobind is more efficient: bindings compile in a shorter amount of time, produce smaller binaries, and have better runtime performance. | -| [nanobind](https://github.com/wjakob/nanobind) | 2.9.2 | lang | Nanobind is a small binding library that exposes C++ types in Python and vice versa. It is reminiscent of Boost.Python and pybind11 and uses near-identical syntax. In contrast to these existing tools, nanobind is more efficient: bindings compile in a shorter amount of time, produce smaller binaries, and have better runtime performance. | -| [nbclassic](https://jupyter.org/) | 1.3.1 | tools | NbClassic provides a backwards compatible Jupyter Notebook interface that you can install side-by-side with the latest versions: That way, you can fearlessly upgrade without worrying about your classic extensions and customizations breaking. | -| [nbclassic](https://jupyter.org/) | 1.3.1 | tools | NbClassic provides a backwards compatible Jupyter Notebook interface that you can install side-by-side with the latest versions: That way, you can fearlessly upgrade without worrying about your classic extensions and customizations breaking. | -| [ncurses](https://www.gnu.org/software/ncurses/) | 5.9 | devel | The Ncurses (new curses) library is a free software emulation of curses in System V Release 4.0, and more. It uses Terminfo format, supports pads and color and multiple highlights and forms characters and function-key mapping, and has all the other SYSV-curses enhancements over BSD Curses. | -| [ncurses](https://www.gnu.org/software/ncurses/) | 5.9 | devel | The Ncurses (new curses) library is a free software emulation of curses in System V Release 4.0, and more. It uses Terminfo format, supports pads and color and multiple highlights and forms characters and function-key mapping, and has all the other SYSV-curses enhancements over BSD Curses. | -| [ncurses](https://www.gnu.org/software/ncurses/) | 6.5 | devel | The Ncurses (new curses) library is a free software emulation of curses in System V Release 4.0, and more. It uses Terminfo format, supports pads and color and multiple highlights and forms characters and function-key mapping, and has all the other SYSV-curses enhancements over BSD Curses. | -| [ncurses](https://www.gnu.org/software/ncurses/) | 6.5 | devel | The Ncurses (new curses) library is a free software emulation of curses in System V Release 4.0, and more. It uses Terminfo format, supports pads and color and multiple highlights and forms characters and function-key mapping, and has all the other SYSV-curses enhancements over BSD Curses. | -| [ncurses](https://www.gnu.org/software/ncurses/) | 6.5 | devel | The Ncurses (new curses) library is a free software emulation of curses in System V Release 4.0, and more. It uses Terminfo format, supports pads and color and multiple highlights and forms characters and function-key mapping, and has all the other SYSV-curses enhancements over BSD Curses. | -| [ncurses](https://www.gnu.org/software/ncurses/) | 6.5 | devel | The Ncurses (new curses) library is a free software emulation of curses in System V Release 4.0, and more. It uses Terminfo format, supports pads and color and multiple highlights and forms characters and function-key mapping, and has all the other SYSV-curses enhancements over BSD Curses. | -| [netCDF-C++4](https://www.unidata.ucar.edu/software/netcdf/) | 4.3.1 | data | NetCDF (network Common Data Form) is a set of software libraries and machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data. | -| [netCDF-C++4](https://www.unidata.ucar.edu/software/netcdf/) | 4.3.1 | data | NetCDF (network Common Data Form) is a set of software libraries and machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data. | -| [netCDF-C++4](https://www.unidata.ucar.edu/software/netcdf/) | 4.3.1 | data | NetCDF (network Common Data Form) is a set of software libraries and machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data. | -| [netCDF-C++4](https://www.unidata.ucar.edu/software/netcdf/) | 4.3.1 | data | NetCDF (network Common Data Form) is a set of software libraries and machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data. | -| [netCDF-Fortran](https://www.unidata.ucar.edu/software/netcdf/) | 4.6.2 | data | NetCDF (network Common Data Form) is a set of software libraries and machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data. | -| [netCDF-Fortran](https://www.unidata.ucar.edu/software/netcdf/) | 4.6.2 | data | NetCDF (network Common Data Form) is a set of software libraries and machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data. | -| [netCDF-Fortran](https://www.unidata.ucar.edu/software/netcdf/) | 4.6.2 | data | NetCDF (network Common Data Form) is a set of software libraries and machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data. | -| [netCDF-Fortran](https://www.unidata.ucar.edu/software/netcdf/) | 4.6.2 | data | NetCDF (network Common Data Form) is a set of software libraries and machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data. | -| [netCDF](https://www.unidata.ucar.edu/software/netcdf/) | 4.9.3 | data | NetCDF (network Common Data Form) is a set of software libraries and machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data. | -| [netCDF](https://www.unidata.ucar.edu/software/netcdf/) | 4.9.3 | data | NetCDF (network Common Data Form) is a set of software libraries and machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data. | -| [netCDF](https://www.unidata.ucar.edu/software/netcdf/) | 4.9.3 | data | NetCDF (network Common Data Form) is a set of software libraries and machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data. | -| [netCDF](https://www.unidata.ucar.edu/software/netcdf/) | 4.9.3 | data | NetCDF (network Common Data Form) is a set of software libraries and machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data. | -| [nettle](https://www.lysator.liu.se/~nisse/nettle/) | 3.10.1 | lib | Nettle is a cryptographic library that is designed to fit easily in more or less any context: In crypto toolkits for object-oriented languages (C++, Python, Pike, ...), in applications like LSH or GNUPG, or even in kernel space. | -| [nettle](https://www.lysator.liu.se/~nisse/nettle/) | 3.10.1 | lib | Nettle is a cryptographic library that is designed to fit easily in more or less any context: In crypto toolkits for object-oriented languages (C++, Python, Pike, ...), in applications like LSH or GNUPG, or even in kernel space. | -| [networkx](https://pypi.python.org/pypi/networkx) | 3.5 | tools | NetworkX is a Python package for the creation, manipulation, and study of the structure, dynamics, and functions of complex networks. | -| [networkx](https://pypi.python.org/pypi/networkx) | 3.5 | tools | NetworkX is a Python package for the creation, manipulation, and study of the structure, dynamics, and functions of complex networks. | -| [nlohmann_json](https://github.com/nlohmann/json) | 3.12.0 | lib | JSON for Modern C++ | -| [nlohmann_json](https://github.com/nlohmann/json) | 3.12.0 | lib | JSON for Modern C++ | -| [nodejs](https://nodejs.org) | 22.16.0 | lang | Node.js is a platform built on Chrome's JavaScript runtime for easily building fast, scalable network applications. Node.js uses an event-driven, non-blocking I/O model that makes it lightweight and efficient, perfect for data-intensive real-time applications that run across distributed devices. | -| [nodejs](https://nodejs.org) | 22.16.0 | lang | Node.js is a platform built on Chrome's JavaScript runtime for easily building fast, scalable network applications. Node.js uses an event-driven, non-blocking I/O model that makes it lightweight and efficient, perfect for data-intensive real-time applications that run across distributed devices. | -| [nsync](https://github.com/google/nsync) | 1.29.2 | devel | nsync is a C library that exports various synchronization primitives, such as mutexes | -| [nsync](https://github.com/google/nsync) | 1.29.2 | devel | nsync is a C library that exports various synchronization primitives, such as mutexes | -| [numactl](https://github.com/numactl/numactl) | 2.0.19 | tools | The numactl program allows you to run your application program on specific cpu's and memory nodes. It does this by supplying a NUMA memory policy to the operating system before running your program. The libnuma library provides convenient ways for you to add NUMA memory policies into your own program. | -| [numactl](https://github.com/numactl/numactl) | 2.0.19 | tools | The numactl program allows you to run your application program on specific cpu's and memory nodes. It does this by supplying a NUMA memory policy to the operating system before running your program. The libnuma library provides convenient ways for you to add NUMA memory policies into your own program. | -| [numba](https://numba.pydata.org/) | 0.62.0 | lang | Numba is an Open Source NumPy-aware optimizing compiler for Python sponsored by Continuum Analytics, Inc. It uses the remarkable LLVM compiler infrastructure to compile Python syntax to machine code. | -| [numba](https://numba.pydata.org/) | 0.62.0 | lang | Numba is an Open Source NumPy-aware optimizing compiler for Python sponsored by Continuum Analytics, Inc. It uses the remarkable LLVM compiler infrastructure to compile Python syntax to machine code. | -| [nvbandwidth](https://github.com/NVIDIA/nvbandwidth) | 0.8 | perf | A tool for bandwidth measurements on NVIDIA GPUs. Measures bandwidth for various memcpy patterns across different links using copy engine or kernel copy methods. nvbandwidth reports current measured bandwidth on your system. Additional system-specific tuning may be required to achieve maximal peak bandwidth. | -| [nvbandwidth](https://github.com/NVIDIA/nvbandwidth) | 0.8 | perf | A tool for bandwidth measurements on NVIDIA GPUs. Measures bandwidth for various memcpy patterns across different links using copy engine or kernel copy methods. nvbandwidth reports current measured bandwidth on your system. Additional system-specific tuning may be required to achieve maximal peak bandwidth. | -| [nvidia-cutlass](https://github.com/nvidia/cutlass) | 3.8.0.0 | lib | CUTLASS is a collection of CUDA C++ template abstractions for implementing high-performance matrix-matrix multiplication (GEMM) and related computations at all levels and scales within CUDA. It incorporates strategies for hierarchical decomposition and data movement similar to those used to implement cuBLAS and cuDNN. CUTLASS decomposes these "moving parts" into reusable, modular software components abstracted by C++ template classes. Primitives for different levels of a conceptual parallelization hierarchy can be specialized and tuned via custom tiling sizes, data types, and other algorithmic policy. The resulting flexibility simplifies their use as building blocks within custom kernels and applications. | -| [nvidia-cutlass](https://github.com/nvidia/cutlass) | 3.8.0.0 | lib | CUTLASS is a collection of CUDA C++ template abstractions for implementing high-performance matrix-matrix multiplication (GEMM) and related computations at all levels and scales within CUDA. It incorporates strategies for hierarchical decomposition and data movement similar to those used to implement cuBLAS and cuDNN. CUTLASS decomposes these "moving parts" into reusable, modular software components abstracted by C++ template classes. Primitives for different levels of a conceptual parallelization hierarchy can be specialized and tuned via custom tiling sizes, data types, and other algorithmic policy. The resulting flexibility simplifies their use as building blocks within custom kernels and applications. | -| [nvompi]((none)) | 2025a | toolchain | NVHPC based compiler toolchain, including OpenMPI for MPI support. | -| [nvompi]((none)) | 2025a | toolchain | NVHPC based compiler toolchain, including OpenMPI for MPI support. | -| [nvtop](https://github.com/Syllo/nvtop) | 3.2.0 | tools | htop-like GPU usage monitor | -| [nvtop](https://github.com/Syllo/nvtop) | 3.2.0 | tools | htop-like GPU usage monitor | -| [ompi-configs](https://openucx.org/) | UCX | system | This module initiates the standard OpenMPI configuration and depends on UCX. A module for setting environment variables. | -| [ompi-configs](https://openucx.org/) | UCX | system | This module initiates the standard OpenMPI configuration and depends on UCX. A module for setting environment variables. | -| [ompi-configs](https://openucx.org/) | UCX-CUDA | system | This module initiates the standard OpenMPI configuration and depends on UCX-CUDA. A module for setting environment variables. | -| [ompi-configs](https://openucx.org/) | UCX-CUDA | system | This module initiates the standard OpenMPI configuration and depends on UCX-CUDA. A module for setting environment variables. | -| [ompi-configs](https://openucx.org/) | UCX-UCC | system | This module initiates the standard OpenMPI configuration and depends on UCX and prioritizes UCC for collective communication. A module for setting environment variables. | -| [ompi-configs](https://openucx.org/) | UCX-UCC | system | This module initiates the standard OpenMPI configuration and depends on UCX and prioritizes UCC for collective communication. A module for setting environment variables. | -| [ompi-configs](https://openucx.org/) | UCX-UCC-CUDA | system | This module initiates the standard OpenMPI configuration and depends on UCX-CUDA and prioritizes UCC for collective communication. A module for setting environment variables. | -| [ompi-configs](https://openucx.org/) | UCX-UCC-CUDA | system | This module initiates the standard OpenMPI configuration and depends on UCX-CUDA and prioritizes UCC for collective communication. A module for setting environment variables. | -| [p7zip](https://github.com/p7zip-project/p7zip/) | 17.05 | tools | p7zip is a quick port of 7z.exe and 7za.exe (CLI version of 7zip) for Unix. 7-Zip is a file archiver with highest compression ratio. | -| [p7zip](https://github.com/p7zip-project/p7zip/) | 17.05 | tools | p7zip is a quick port of 7z.exe and 7za.exe (CLI version of 7zip) for Unix. 7-Zip is a file archiver with highest compression ratio. | -| [parallel](https://savannah.gnu.org/projects/parallel/) | 20250722 | tools | parallel: Build and execute shell commands in parallel | -| [parallel](https://savannah.gnu.org/projects/parallel/) | 20250722 | tools | parallel: Build and execute shell commands in parallel | -| [parameterized](https://github.com/wolever/parameterized) | 0.9.0 | tools | Parameterized testing with any Python test framework | -| [parameterized](https://github.com/wolever/parameterized) | 0.9.0 | tools | Parameterized testing with any Python test framework | -| [patchelf](https://github.com/NixOS/patchelf) | 0.18.0 | tools | PatchELF is a small utility to modify the dynamic linker and RPATH of ELF executables. | -| [patchelf](https://github.com/NixOS/patchelf) | 0.18.0 | tools | PatchELF is a small utility to modify the dynamic linker and RPATH of ELF executables. | -| [pixman](http://www.pixman.org/) | 0.46.2 | vis | Pixman is a low-level software library for pixel manipulation, providing features such as image compositing and trapezoid rasterization. Important users of pixman are the cairo graphics library and the X server. | -| [pixman](http://www.pixman.org/) | 0.46.2 | vis | Pixman is a low-level software library for pixel manipulation, providing features such as image compositing and trapezoid rasterization. Important users of pixman are the cairo graphics library and the X server. | -| [pkg-config](https://www.freedesktop.org/wiki/Software/pkg-config/) | 0.29.2 | devel | pkg-config is a helper tool used when compiling applications and libraries. It helps you insert the correct compiler options on the command line so an application can use gcc -o test test.c `pkg-config --libs --cflags glib-2.0` for instance, rather than hard-coding values on where to find glib (or other libraries). | -| [pkg-config](https://www.freedesktop.org/wiki/Software/pkg-config/) | 0.29.2 | devel | pkg-config is a helper tool used when compiling applications and libraries. It helps you insert the correct compiler options on the command line so an application can use gcc -o test test.c `pkg-config --libs --cflags glib-2.0` for instance, rather than hard-coding values on where to find glib (or other libraries). | -| [pkgconf](https://github.com/pkgconf/pkgconf) | 1.8.0 | devel | pkgconf is a program which helps to configure compiler and linker flags for development libraries. It is similar to pkg-config from freedesktop.org. | -| [pkgconf](https://github.com/pkgconf/pkgconf) | 1.8.0 | devel | pkgconf is a program which helps to configure compiler and linker flags for development libraries. It is similar to pkg-config from freedesktop.org. | -| [pkgconf](https://github.com/pkgconf/pkgconf) | 2.3.0 | devel | pkgconf is a program which helps to configure compiler and linker flags for development libraries. It is similar to pkg-config from freedesktop.org. | -| [pkgconf](https://github.com/pkgconf/pkgconf) | 2.3.0 | devel | pkgconf is a program which helps to configure compiler and linker flags for development libraries. It is similar to pkg-config from freedesktop.org. | -| [plotly.py](https://plot.ly/python) | 6.3.1 | vis | An open-source, interactive graphing library for Python | -| [plotly.py](https://plot.ly/python) | 6.3.1 | vis | An open-source, interactive graphing library for Python | -| [pocl](http://portablecl.org) | 7.0 | lib | PoCL is a conformant implementation (for CPU and Level Zero GPU targets) of the OpenCL 3.0 standard which can be easily adapted for new targets. | -| [pocl](http://portablecl.org) | 7.0 | lib | PoCL is a conformant implementation (for CPU and Level Zero GPU targets) of the OpenCL 3.0 standard which can be easily adapted for new targets. | -| [poetry](https://python-poetry.org) | 2.1.2 | tools | Python packaging and dependency management made easy. Poetry helps you declare, manage and install dependencies of Python projects, ensuring you have the right stack everywhere. | -| [poetry](https://python-poetry.org) | 2.1.2 | tools | Python packaging and dependency management made easy. Poetry helps you declare, manage and install dependencies of Python projects, ensuring you have the right stack everywhere. | -| [popt](http://freecode.com/projects/popt) | 1.19 | lib | Popt is a C library for parsing command line parameters. | -| [popt](http://freecode.com/projects/popt) | 1.19 | lib | Popt is a C library for parsing command line parameters. | -| [protobuf-python](https://github.com/google/protobuf/) | 6.31.1 | devel | Python Protocol Buffers runtime library. | -| [protobuf-python](https://github.com/google/protobuf/) | 6.31.1 | devel | Python Protocol Buffers runtime library. | -| [protobuf](https://github.com/protocolbuffers/protobuf) | 31.1 | devel | Protocol Buffers (a.k.a., protobuf) are Google's language-neutral, platform-neutral, extensible mechanism for serializing structured data. | -| [protobuf](https://github.com/protocolbuffers/protobuf) | 31.1 | devel | Protocol Buffers (a.k.a., protobuf) are Google's language-neutral, platform-neutral, extensible mechanism for serializing structured data. | -| [psutil](https://github.com/giampaolo/psutil) | 7.0.0 | lib | A cross-platform process and system utilities module for Python | -| [psutil](https://github.com/giampaolo/psutil) | 7.0.0 | lib | A cross-platform process and system utilities module for Python | -| [psycopg](https://psycopg.org/) | 3.2.9 | lib | Psycopg is the most popular PostgreSQL adapter for the Python programming language. | -| [psycopg](https://psycopg.org/) | 3.2.9 | lib | Psycopg is the most popular PostgreSQL adapter for the Python programming language. | -| [pybind11](https://pybind11.readthedocs.io) | 2.13.6 | lib | pybind11 is a lightweight header-only library that exposes C++ types in Python and vice versa, mainly to create Python bindings of existing C++ code. | -| [pybind11](https://pybind11.readthedocs.io) | 2.13.6 | lib | pybind11 is a lightweight header-only library that exposes C++ types in Python and vice versa, mainly to create Python bindings of existing C++ code. | -| [pydantic](https://github.com/samuelcolvin/pydantic) | 2.11.7 | devel | Data validation and settings management using Python type hinting. | -| [pydantic](https://github.com/samuelcolvin/pydantic) | 2.11.7 | devel | Data validation and settings management using Python type hinting. | -| [pydot](https://github.com/pydot/pydot) | 4.0.0 | vis | Python interface to Graphviz's Dot language. | -| [pydot](https://github.com/pydot/pydot) | 4.0.0 | vis | Python interface to Graphviz's Dot language. | -| [pyfaidx](https://pypi.python.org/pypi/pyfaidx) | 0.8.1.4 | bio | pyfaidx: efficient pythonic random access to fasta subsequences | -| [pyfaidx](https://pypi.python.org/pypi/pyfaidx) | 0.8.1.4 | bio | pyfaidx: efficient pythonic random access to fasta subsequences | -| [pyproj](https://pyproj4.github.io/pyproj) | 3.7.1 | data | Python interface to PROJ4 library for cartographic transformations | -| [pyproj](https://pyproj4.github.io/pyproj) | 3.7.1 | data | Python interface to PROJ4 library for cartographic transformations | -| [pytest-flakefinder](https://github.com/dropbox/pytest-flakefinder) | 1.1.0 | tools | Runs tests multiple times to expose flakiness. | -| [pytest-flakefinder](https://github.com/dropbox/pytest-flakefinder) | 1.1.0 | tools | Runs tests multiple times to expose flakiness. | -| [pytest-rerunfailures](https://github.com/pytest-dev/pytest-rerunfailures) | 15.0 | tools | pytest plugin to re-run tests to eliminate flaky failures. | -| [pytest-rerunfailures](https://github.com/pytest-dev/pytest-rerunfailures) | 15.0 | tools | pytest plugin to re-run tests to eliminate flaky failures. | -| [pytest-shard](https://github.com/AdamGleave/pytest-shard) | 0.1.2 | tools | pytest plugin to support parallelism across multiple machines. Shards tests based on a hash of their test name enabling easy parallelism across machines, suitable for a wide variety of continuous integration services. Tests are split at the finest level of granularity, individual test cases, enabling parallelism even if all of your tests are in a single file (or even single parameterized test method). | -| [pytest-shard](https://github.com/AdamGleave/pytest-shard) | 0.1.2 | tools | pytest plugin to support parallelism across multiple machines. Shards tests based on a hash of their test name enabling easy parallelism across machines, suitable for a wide variety of continuous integration services. Tests are split at the finest level of granularity, individual test cases, enabling parallelism even if all of your tests are in a single file (or even single parameterized test method). | -| [pytest-subtests](https://github.com/pytest-dev/pytest-subtests) | 0.13.1 | tools | unittest subTest() support and subtests fixture. | -| [pytest-subtests](https://github.com/pytest-dev/pytest-subtests) | 0.13.1 | tools | unittest subTest() support and subtests fixture. | -| [pyzstd](https://github.com/pycompression/python-zlib-ng) | 0.17.0 | tools | Pyzstd module provides classes and functions for compressing and decompressing data, using Facebook's Zstandard (or zstd as short name) algorithm. The API style is similar to Python's bz2/lzma/zlib modules. | -| [pyzstd](https://github.com/pycompression/python-zlib-ng) | 0.17.0 | tools | Pyzstd module provides classes and functions for compressing and decompressing data, using Facebook's Zstandard (or zstd as short name) algorithm. The API style is similar to Python's bz2/lzma/zlib modules. | -| [qsimcirq](https://github.com/quantumlib/qsim) | 0.22.0 | quantum | qsim is a state-vector simulator for quantum circuits. It is highly tuned to take advantage of vector arithmetic instruction sets and multithreading on computers that provide them, as well as GPUs when available. qsim also provides a Cirq interface (qsimcirq) and can be used to simulate quantum circuits written in Cirq. | -| [qsimcirq](https://github.com/quantumlib/qsim) | 0.22.0 | quantum | qsim is a state-vector simulator for quantum circuits. It is highly tuned to take advantage of vector arithmetic instruction sets and multithreading on computers that provide them, as well as GPUs when available. qsim also provides a Cirq interface (qsimcirq) and can be used to simulate quantum circuits written in Cirq. | -| [re2c](https://re2c.org) | 4.2 | tools | re2c is a free and open-source lexer generator for C and C++. Its main goal is generating fast lexers: at least as fast as their reasonably optimized hand-coded counterparts. Instead of using traditional table-driven approach, re2c encodes the generated finite state automata directly in the form of conditional jumps and comparisons. | -| [re2c](https://re2c.org) | 4.2 | tools | re2c is a free and open-source lexer generator for C and C++. Its main goal is generating fast lexers: at least as fast as their reasonably optimized hand-coded counterparts. Instead of using traditional table-driven approach, re2c encodes the generated finite state automata directly in the form of conditional jumps and comparisons. | -| [retworkx](https://github.com/Qiskit/retworkx) | 0.9.0 | math | retworkx is a general purpose graph library for python3 written in Rust to take advantage of the performance and safety that Rust provides. It was built as a replacement for qiskit's previous (and current) networkx usage (hence the name) but is designed to provide a high performance general purpose graph library for any python application. The project was originally started to build a faster directed graph to use as the underlying data structure for the DAG at the center of qiskit-terra's transpiler, but it has since grown to cover all the graph usage in Qiskit and other applications. | -| [retworkx](https://github.com/Qiskit/retworkx) | 0.9.0 | math | retworkx is a general purpose graph library for python3 written in Rust to take advantage of the performance and safety that Rust provides. It was built as a replacement for qiskit's previous (and current) networkx usage (hence the name) but is designed to provide a high performance general purpose graph library for any python application. The project was originally started to build a faster directed graph to use as the underlying data structure for the DAG at the center of qiskit-terra's transpiler, but it has since grown to cover all the graph usage in Qiskit and other applications. | -| [rustworkx](https://github.com/Qiskit/rustworkx) | 0.16.0 | math | rustworkx (previously retworkx) is a general purpose graph library for Python written in Rust to take advantage of the performance and safety that Rust provides. It is designed to provide a high performance general purpose graph library for any Python application. | -| [rustworkx](https://github.com/Qiskit/rustworkx) | 0.16.0 | math | rustworkx (previously retworkx) is a general purpose graph library for Python written in Rust to take advantage of the performance and safety that Rust provides. It is designed to provide a high performance general purpose graph library for any Python application. | -| [s3cmd](https://s3tools.org/s3cmd) | 2.4.0 | tools | S3cmd lets you copy files from/to Amazon S3 (Simple Storage Service) using a simple to use command line client. Supports rsync-like backup, GPG encryption, and more. Also supports management of Amazon’s CloudFront content delivery network. | -| [s3cmd](https://s3tools.org/s3cmd) | 2.4.0 | tools | S3cmd lets you copy files from/to Amazon S3 (Simple Storage Service) using a simple to use command line client. Supports rsync-like backup, GPG encryption, and more. Also supports management of Amazon’s CloudFront content delivery network. | -| [scikit-build-core](https://scikit-build.readthedocs.io/en/latest/) | 0.11.1 | lib | Scikit-build-core is a complete ground-up rewrite of scikit-build on top of modern packaging APIs. It provides a bridge between CMake and the Python build system, allowing you to make Python modules with CMake. | -| [scikit-build-core](https://scikit-build.readthedocs.io/en/latest/) | 0.11.1 | lib | Scikit-build-core is a complete ground-up rewrite of scikit-build on top of modern packaging APIs. It provides a bridge between CMake and the Python build system, allowing you to make Python modules with CMake. | -| [scikit-build](https://scikit-build.readthedocs.io/en/latest) | 0.18.1 | lib | Scikit-Build, or skbuild, is an improved build system generator for CPython C/C++/Fortran/Cython extensions. | -| [scikit-build](https://scikit-build.readthedocs.io/en/latest) | 0.18.1 | lib | Scikit-Build, or skbuild, is an improved build system generator for CPython C/C++/Fortran/Cython extensions. | -| [scikit-image](https://scikit-image.org/) | 0.25.0 | vis | scikit-image is a collection of algorithms for image processing. | -| [scikit-image](https://scikit-image.org/) | 0.25.0 | vis | scikit-image is a collection of algorithms for image processing. | -| [scikit-learn](https://scikit-learn.org/stable/index.html) | 1.7.0 | data | Scikit-learn integrates machine learning algorithms in the tightly-knit scientific Python world, building upon numpy, scipy, and matplotlib. As a machine-learning module, it provides versatile tools for data mining and analysis in any field of science and engineering. It strives to be simple and efficient, accessible to everybody, and reusable in various contexts. | -| [scikit-learn](https://scikit-learn.org/stable/index.html) | 1.7.0 | data | Scikit-learn integrates machine learning algorithms in the tightly-knit scientific Python world, building upon numpy, scipy, and matplotlib. As a machine-learning module, it provides versatile tools for data mining and analysis in any field of science and engineering. It strives to be simple and efficient, accessible to everybody, and reusable in various contexts. | -| [setuptools-rust](https://github.com/PyO3/setuptools-rust) | 1.11.0 | tools | setuptools-rust is a plugin for setuptools to build Rust Python extensions implemented with PyO3 or rust-cpython. | -| [setuptools-rust](https://github.com/PyO3/setuptools-rust) | 1.11.0 | tools | setuptools-rust is a plugin for setuptools to build Rust Python extensions implemented with PyO3 or rust-cpython. | -| [setuptools](https://pypi.org/project/setuptools) | 80.9.0 | devel | Easily download, build, install, upgrade, and uninstall Python packages | -| [setuptools](https://pypi.org/project/setuptools) | 80.9.0 | devel | Easily download, build, install, upgrade, and uninstall Python packages | -| [shared-mime-info](https://gitlab.freedesktop.org/xdg/shared-mime-info) | 2.4 | tools | The shared-mime-info package contains: The core database of common MIME types, their file extensions and icon names. The update-mime-database command, used to extend the DB and install a new MIME data. The freedesktop.org shared MIME database spec. It is used by GLib, GNOME, KDE, XFCE and many others. | -| [shared-mime-info](https://gitlab.freedesktop.org/xdg/shared-mime-info) | 2.4 | tools | The shared-mime-info package contains: The core database of common MIME types, their file extensions and icon names. The update-mime-database command, used to extend the DB and install a new MIME data. The freedesktop.org shared MIME database spec. It is used by GLib, GNOME, KDE, XFCE and many others. | -| [snappy](https://github.com/google/snappy) | 1.2.2 | lib | Snappy is a compression/decompression library. It does not aim for maximum compression, or compatibility with any other compression library; instead, it aims for very high speeds and reasonable compression. | -| [snappy](https://github.com/google/snappy) | 1.2.2 | lib | Snappy is a compression/decompression library. It does not aim for maximum compression, or compatibility with any other compression library; instead, it aims for very high speeds and reasonable compression. | -| [spdlog](https://github.com/gabime/spdlog) | 1.11.0 | lib | Very fast, header-only/compiled, C++ logging library. | -| [spdlog](https://github.com/gabime/spdlog) | 1.11.0 | lib | Very fast, header-only/compiled, C++ logging library. | -| [spglib](https://spglib.github.io/spglib/) | 2.6.0 | chem | Spglib is a C library for finding and handling crystal symmetries. | -| [spglib](https://spglib.github.io/spglib/) | 2.6.0 | chem | Spglib is a C library for finding and handling crystal symmetries. | -| [spin](https://github.com/scientific-python/spin) | 0.14 | devel | Developer tool for scientific Python libraries | -| [spin](https://github.com/scientific-python/spin) | 0.14 | devel | Developer tool for scientific Python libraries | -| [squashfuse](https://github.com/vasi/squashfuse) | 0.6.1 | lib | Squashfuse lets you mount SquashFS archives in user-space. It supports almost all features of the SquashFS format, yet is still fast and memory-efficient. So that everyone can use it, squashfuse supports many different operating systems #and is available under a permissing license. SquashFS is an efficiently compressed, read-only storage format. Support for it has been built into the Linux kernel since 2009. It is very common on Live CDs and embedded Linux distributions. | -| [squashfuse](https://github.com/vasi/squashfuse) | 0.6.1 | lib | Squashfuse lets you mount SquashFS archives in user-space. It supports almost all features of the SquashFS format, yet is still fast and memory-efficient. So that everyone can use it, squashfuse supports many different operating systems #and is available under a permissing license. SquashFS is an efficiently compressed, read-only storage format. Support for it has been built into the Linux kernel since 2009. It is very common on Live CDs and embedded Linux distributions. | -| [sympy](https://sympy.org/) | 1.14.0 | math | SymPy is a Python library for symbolic mathematics. It aims to become a full-featured computer algebra system (CAS) while keeping the code as simple as possible in order to be comprehensible and easily extensible. SymPy is written entirely in Python and does not require any external libraries. | -| [sympy](https://sympy.org/) | 1.14.0 | math | SymPy is a Python library for symbolic mathematics. It aims to become a full-featured computer algebra system (CAS) while keeping the code as simple as possible in order to be comprehensible and easily extensible. SymPy is written entirely in Python and does not require any external libraries. | -| [tbb](https://github.com/oneapi-src/oneTBB) | 2022.2.0 | lib | Intel(R) Threading Building Blocks (Intel(R) TBB) lets you easily write parallel C++ programs that take full advantage of multicore performance, that are portable, composable and have future-proof scalability. | -| [tbb](https://github.com/oneapi-src/oneTBB) | 2022.2.0 | lib | Intel(R) Threading Building Blocks (Intel(R) TBB) lets you easily write parallel C++ programs that take full advantage of multicore performance, that are portable, composable and have future-proof scalability. | -| [tcsh](https://www.tcsh.org) | 6.24.16 | tools | Tcsh is an enhanced, but completely compatible version of the Berkeley UNIX C shell (csh). It is a command language interpreter usable both as an interactive login shell and a shell script command processor. It includes a command-line editor, programmable word completion, spelling correction, a history mechanism, job control and a C-like syntax. | -| [tcsh](https://www.tcsh.org) | 6.24.16 | tools | Tcsh is an enhanced, but completely compatible version of the Berkeley UNIX C shell (csh). It is a command language interpreter usable both as an interactive login shell and a shell script command processor. It includes a command-line editor, programmable word completion, spelling correction, a history mechanism, job control and a C-like syntax. | -| [time](https://www.gnu.org/software/time/) | 1.9 | tools | The `time' command runs another program, then displays information about the resources used by that program, collected by the system while the program was running. | -| [time](https://www.gnu.org/software/time/) | 1.9 | tools | The `time' command runs another program, then displays information about the resources used by that program, collected by the system while the program was running. | -| [tlparse](https://github.com/ezyang/tlparse) | 0.3.37 | tools | Parse structured PT2 (PyTorch 2) logs | -| [tlparse](https://github.com/ezyang/tlparse) | 0.3.37 | tools | Parse structured PT2 (PyTorch 2) logs | -| [torchaudio](https://github.com/pytorch/audio) | 2.9.1 | ai | Data manipulation and transformation for audio signal processing, powered by PyTorch | -| [torchvision](https://github.com/pytorch/vision) | 0.24.1 | vis | Datasets, Transforms and Models specific to Computer Vision | -| [tornado](https://github.com/tornadoweb/tornado) | 6.5.1 | lib | Tornado is a Python web framework and asynchronous networking library. | -| [tornado](https://github.com/tornadoweb/tornado) | 6.5.1 | lib | Tornado is a Python web framework and asynchronous networking library. | -| [tqdm](https://github.com/tqdm/tqdm) | 4.67.1 | lib | A fast, extensible progress bar for Python and CLI | -| [tqdm](https://github.com/tqdm/tqdm) | 4.67.1 | lib | A fast, extensible progress bar for Python and CLI | -| [typing-extensions](https://github.com/python/typing_extensions) | 4.14.0 | devel | Typing Extensions - Backported and Experimental Type Hints for Python | -| [typing-extensions](https://github.com/python/typing_extensions) | 4.14.0 | devel | Typing Extensions - Backported and Experimental Type Hints for Python | -| [ucx-configs](https://openucx.org/) | DC | system | This module configures UCX to use the UD (Dynamically Connected) transport layer. Each process would use a single network device according to NUMA locality. | -| [ucx-configs](https://openucx.org/) | DC | system | This module configures UCX to use the UD (Dynamically Connected) transport layer. Each process would use a single network device according to NUMA locality. | -| [ucx-configs](https://openucx.org/) | DC-CUDA | system | This module configures UCX to use the UD (Dynamically Connected) transport layer with the CUWA-aware transports. Each process would use a single network device according to NUMA locality. | -| [ucx-configs](https://openucx.org/) | DC-CUDA | system | This module configures UCX to use the UD (Dynamically Connected) transport layer with the CUWA-aware transports. Each process would use a single network device according to NUMA locality. | -| [ucx-configs](https://openucx.org/) | RC | system | This module configures UCX to use the RC (Reliable Connected) transport layer. Each process would use a single network device according to NUMA locality. | -| [ucx-configs](https://openucx.org/) | RC | system | This module configures UCX to use the RC (Reliable Connected) transport layer. Each process would use a single network device according to NUMA locality. | -| [ucx-configs](https://openucx.org/) | RC-CUDA | system | This module configures UCX to use the RC (Reliable Connected) transport layer with the CUWA-aware transports. Each process would use a single network device according to NUMA locality. | -| [ucx-configs](https://openucx.org/) | RC-CUDA | system | This module configures UCX to use the RC (Reliable Connected) transport layer with the CUWA-aware transports. Each process would use a single network device according to NUMA locality. | -| [ucx-configs](https://openucx.org/) | UD | system | This module configures UCX to use the UD (Unreliable Datagram) transport layer. Each process would use a single network device according to NUMA locality. | -| [ucx-configs](https://openucx.org/) | UD | system | This module configures UCX to use the UD (Unreliable Datagram) transport layer. Each process would use a single network device according to NUMA locality. | -| [ucx-configs](https://openucx.org/) | UD-CUDA | system | This module configures UCX to use the UD (Unreliable Datagram) transport layer with the CUWA-aware transports. Each process would use a single network device according to NUMA locality. | -| [ucx-configs](https://openucx.org/) | UD-CUDA | system | This module configures UCX to use the UD (Unreliable Datagram) transport layer with the CUWA-aware transports. Each process would use a single network device according to NUMA locality. | -| [utf8proc](https://github.com/JuliaStrings/utf8proc) | 2.10.0 | lib | utf8proc is a small, clean C library that provides Unicode normalization, case-folding, and other operations for data in the UTF-8 encoding. | -| [utf8proc](https://github.com/JuliaStrings/utf8proc) | 2.10.0 | lib | utf8proc is a small, clean C library that provides Unicode normalization, case-folding, and other operations for data in the UTF-8 encoding. | -| [util-linux](https://www.kernel.org/pub/linux/utils/util-linux) | 2.41 | tools | Set of Linux utilities | -| [util-linux](https://www.kernel.org/pub/linux/utils/util-linux) | 2.41 | tools | Set of Linux utilities | -| [virtualenv](https://github.com/pypa/virtualenv) | 20.29.2 | tools | A tool for creating isolated virtual python environments. | -| [virtualenv](https://github.com/pypa/virtualenv) | 20.29.2 | tools | A tool for creating isolated virtual python environments. | -| [wrapt](https://pypi.org/project/wrapt/) | 1.17.2 | tools | The aim of the wrapt module is to provide a transparent object proxy for Python, which can be used as the basis for the construction of function wrappers and decorator functions. | -| [wrapt](https://pypi.org/project/wrapt/) | 1.17.2 | tools | The aim of the wrapt module is to provide a transparent object proxy for Python, which can be used as the basis for the construction of function wrappers and decorator functions. | -| [x264](https://www.videolan.org/developers/x264.html) | 20250619 | vis | x264 is a free software library and application for encoding video streams into the H.264/MPEG-4 AVC compression format, and is released under the terms of the GNU GPL. | -| [x264](https://www.videolan.org/developers/x264.html) | 20250619 | vis | x264 is a free software library and application for encoding video streams into the H.264/MPEG-4 AVC compression format, and is released under the terms of the GNU GPL. | -| [x265](https://x265.org/) | 4.1 | vis | x265 is a free software library and application for encoding video streams into the H.265 AVC compression format, and is released under the terms of the GNU GPL. | -| [x265](https://x265.org/) | 4.1 | vis | x265 is a free software library and application for encoding video streams into the H.265 AVC compression format, and is released under the terms of the GNU GPL. | -| [xcb-proto](https://xcb.freedesktop.org/) | 1.17.0 | devel | The X protocol C-language Binding (XCB) is a replacement for Xlib featuring a small footprint, latency hiding, direct access to the protocol, improved threading support, and extensibility. | -| [xcb-proto](https://xcb.freedesktop.org/) | 1.17.0 | devel | The X protocol C-language Binding (XCB) is a replacement for Xlib featuring a small footprint, latency hiding, direct access to the protocol, improved threading support, and extensibility. | -| [xorg-macros](https://gitlab.freedesktop.org/xorg/util/macros) | 1.20.2 | devel | X.org macros utilities. | -| [xorg-macros](https://gitlab.freedesktop.org/xorg/util/macros) | 1.20.2 | devel | X.org macros utilities. | -| [xxd](https://www.vim.org) | 9.1.1457 | tools | xxd is part of the VIM package and this will only install xxd, not vim! xxd converts to/from hexdumps of binary files. | -| [xxd](https://www.vim.org) | 9.1.1457 | tools | xxd is part of the VIM package and this will only install xxd, not vim! xxd converts to/from hexdumps of binary files. | -| [yaml-cpp](https://github.com/jbeder/yaml-cpp) | 0.8.0 | tools | yaml-cpp is a YAML parser and emitter in C++ matching the YAML 1.2 spec | -| [yaml-cpp](https://github.com/jbeder/yaml-cpp) | 0.8.0 | tools | yaml-cpp is a YAML parser and emitter in C++ matching the YAML 1.2 spec | -| [zlib](https://www.zlib.net/) | 1.2.13 | lib | zlib is designed to be a free, general-purpose, legally unencumbered -- that is, not covered by any patents -- lossless data-compression library for use on virtually any computer hardware and operating system. | -| [zlib](https://www.zlib.net/) | 1.2.13 | lib | zlib is designed to be a free, general-purpose, legally unencumbered -- that is, not covered by any patents -- lossless data-compression library for use on virtually any computer hardware and operating system. | -| [zlib](https://www.zlib.net/) | 1.3.1 | lib | zlib is designed to be a free, general-purpose, legally unencumbered -- that is, not covered by any patents -- lossless data-compression library for use on virtually any computer hardware and operating system. | -| [zlib](https://www.zlib.net/) | 1.3.1 | lib | zlib is designed to be a free, general-purpose, legally unencumbered -- that is, not covered by any patents -- lossless data-compression library for use on virtually any computer hardware and operating system. | -| [zlib](https://www.zlib.net/) | 1.3.1 | lib | zlib is designed to be a free, general-purpose, legally unencumbered -- that is, not covered by any patents -- lossless data-compression library for use on virtually any computer hardware and operating system. | -| [zlib](https://www.zlib.net/) | 1.3.1 | lib | zlib is designed to be a free, general-purpose, legally unencumbered -- that is, not covered by any patents -- lossless data-compression library for use on virtually any computer hardware and operating system. | -| [zstd](https://facebook.github.io/zstd) | 1.5.6 | lib | Zstandard is a real-time compression algorithm, providing high compression ratios. It offers a very wide range of compression/speed trade-off, while being backed by a very fast decoder. It also offers a special mode for small data, called dictionary compression, and can create dictionaries from any sample set. | -| [zstd](https://facebook.github.io/zstd) | 1.5.6 | lib | Zstandard is a real-time compression algorithm, providing high compression ratios. It offers a very wide range of compression/speed trade-off, while being backed by a very fast decoder. It also offers a special mode for small data, called dictionary compression, and can create dictionaries from any sample set. | \ No newline at end of file diff --git a/mkdocs.yml b/mkdocs.yml index 9e465e5d9..c0612b61a 100644 --- a/mkdocs.yml +++ b/mkdocs.yml @@ -145,9 +145,11 @@ nav: - Utilities: 'software/swsets/tools.md' - Visualisation: 'software/swsets/vis.md' - Software Sets: - - 2019b: 'software/swsets/2019b.md' - - 2020a: 'software/swsets/2020b.md' - - Meluxina: 'software/swsets/stack.md' + - 2019b: 'software/swsets/2019b.md' + - 2020a: 'software/swsets/2020b.md' + - 2023b: 'software/swsets/2023b.md' + - 2024a: 'software/swsets/2024a.md' + - 2025a: 'software/swsets/2025a.md' ### END GENERATED CONTENT # - Software Set Versioning: 'software/swsets.md' - Compiling/building your own software: 'software/build.md' From 32bca308dc377450df7fd097f7ff97facb74ead6 Mon Sep 17 00:00:00 2001 From: Georgios Kafanas Date: Wed, 22 Jul 2026 17:35:26 +0200 Subject: [PATCH 06/20] Create one table per software release The idea is to merge the tables so that at the end we have a tag list: machine/arch/version next to each software (version = software set version). --- scripts/eb_metadata.py | 191 +++++++++++++++++++++++++++++------------ 1 file changed, 135 insertions(+), 56 deletions(-) diff --git a/scripts/eb_metadata.py b/scripts/eb_metadata.py index 3f31b96de..25d694c18 100644 --- a/scripts/eb_metadata.py +++ b/scripts/eb_metadata.py @@ -4,19 +4,49 @@ import pandas as pd import json -def homepage_link(text, url): - if pd.notna(url) and url: - return f"[{text}]({url})" - return text +# Add only software in "release" modules! Only one build number in release. +software = { + "aion": { + "epyc": { + "2026a": "rhel810-20260107", + "2025a": None, + "2024a": None, + "2023b": None, + }, + }, + "iris": { + "broadwell": { + "2026a": None, + "2025a": None, + "2024a": None, + "2023b": None, + }, + "skylake": { + "2026a": None, + "2025a": None, + "2024a": None, + "2023b": None, + }, + "gpu": { + "2026a": None, + "2025a": None, + "2024a": None, + "2023b": None, + }, + "hopper": { + "2026a": None, + "2025a": None, + "2024a": None, + "2023b": None, + }, + }, +} +base_path = Path("/opt/apps/easybuild/systems/") + +def extract_easyconfigs_info(eb, software_path, stack): + if eb.is_relative_to(software_path / "EasyBuild"): + return stack -software = Path("/apps/USE/easybuild/release/2025.1/software/") -stack = [] - -options, cfg_settings = set_up_configuration(args=[]) - -for eb in software.rglob("*.eb"): - print(eb) - try: ecs = process_easyconfig(str(eb), validate = False) @@ -32,59 +62,108 @@ def homepage_link(text, url): } stack.append(package) - + except Exception as excpt: print(f"Failed: {eb}: {excpt}") + return stack + +def get_software_stack(software_path): + stack = [] + options, cfg_settings = set_up_configuration(args=[]) + + for eb in software.rglob("*.eb"): + #print(eb) + extract_easyconfigs_info(eb, software_path, stack) + + return stack + + # with open("stack.json", "w") as fp: # json.dump(stack, fp, indent=2, default=str) #stack = pd.read_json("stack.json") -df = pd.DataFrame(stack) - -# Clean software descriptions -df["description"] = ( - df["description"] - .fillna("") - .str.replace(r"\s+", " ", regex=True) - .str.strip() -) - - -# Combine versions for the same software -df = ( - df.groupby( - ["name", "homepage", "moduleclass", "description"], - as_index=False) - .agg({ - "version": lambda x: "
".join(sorted(set(x))) - }) -) - - -# Create Markdown hyperlinks -df["software"] = df.apply( - lambda row: homepage_link(row["name"], row["homepage"]), - axis=1, -) - -#Reorder columns -df = df[ - [ - "software", - "version", - "moduleclass", - "description", +def homepage_link(text, url): + if pd.notna(url) and url: + return f"[{text}]({url})" + return text + +def get_softare_table(stack): + df = pd.DataFrame(stack) + + # Clean software descriptions + df["description"] = df["description"] + .fillna("") + .str.replace(r"\s+", " ", regex=True) + .str.strip() + + # Combine versions for the same software + df = df.groupby( + ["name", "homepage", "moduleclass", "description"], + as_index=False + ).agg({ + "version": ( lambda x: "
".join(sorted(list(set(x)))) ), + }) + + # Create Markdown hyperlinks + df["software"] = df.apply( + lambda row: homepage_link(row["name"], row["homepage"]), + axis=1, + ) + + # Reorder columns + df = df[ + [ + "software", + "version", + "moduleclass", + "description", + ] ] -] -# Sort alphabetically -df = df.sort_values(["software", "version"]) + # Sort alphabetically + df = df.sort_values(["software", "version"]) + + return df + +def set_nested_map(mp, entries, value): + if len(entries) == 0: + return dict() + + entry = entries.pop(0) + if len(entries) == 0: + mp[entry] = value + return mp + + if len(mp) == 0: + mp[entry] = dict() + + val = setup_map(mp[entry], entries, value) + mp[entry] = val + + return mp + +def get_software_tables(): + software_tables = dict() + + for machine in software.keys(): + for arch in software[machine].keys(): + for version in software[machine][arch].keys(): + if software[machine][arch][version] is not None: + build_number = software[machine][arch][version] + software_path = base_path / machine / arch / version / build_number / "software" + stack = get_software_stack(software_path) + table = get_softare_table(stack) + + # One build per (machine, arch, version) in release! + software_tables = set_nested_map(software_tables, [machine, arch, version], table) + + return software_tables -# Write Markdown -with open("stack.md", "w") as f: - f.write(df.to_markdown(index=False)) +## Write Markdown +#with open("stack.md", "w") as f: +# f.write(df.to_markdown(index=False)) -# Keep JSON too -df.to_json("stack.json", orient="records", indent=2) +## Keep JSON too +#df.to_json("stack.json", orient="records", indent=2) From 43b5956b5d4885cb5f85a2e86be139a5a40d6e90 Mon Sep 17 00:00:00 2001 From: Jorge Delgado Guerrero Date: Fri, 24 Jul 2026 18:01:01 +0200 Subject: [PATCH 07/20] [Build&Refactor] Full refactor and implementation of new functions --- scripts/eb_metadata.py | 269 +++++++++++++++++++++++------------------ 1 file changed, 150 insertions(+), 119 deletions(-) diff --git a/scripts/eb_metadata.py b/scripts/eb_metadata.py index 25d694c18..d3f075ed1 100644 --- a/scripts/eb_metadata.py +++ b/scripts/eb_metadata.py @@ -1,169 +1,200 @@ +import json +import socket +import os +from pathlib import Path + from easybuild.tools.options import set_up_configuration from easybuild.framework.easyconfig.easyconfig import process_easyconfig -from pathlib import Path +from easybuild.framework.easyconfig.parser import EasyConfigParser import pandas as pd -import json +#----------------------------------------- +# Run only with Easybuild versions 5.3.x or above +# Define available software releases # Add only software in "release" modules! Only one build number in release. -software = { - "aion": { - "epyc": { - "2026a": "rhel810-20260107", - "2025a": None, - "2024a": None, - "2023b": None, - }, - }, - "iris": { - "broadwell": { - "2026a": None, - "2025a": None, - "2024a": None, - "2023b": None, - }, - "skylake": { - "2026a": None, - "2025a": None, - "2024a": None, - "2023b": None, - }, - "gpu": { - "2026a": None, - "2025a": None, - "2024a": None, - "2023b": None, - }, - "hopper": { - "2026a": None, - "2025a": None, - "2024a": None, - "2023b": None, - }, + +cluster_info = { + 'releases' : [ + "2025a", + "2024a", + "2023b", + ], + + 'build' : "rhel810-20260107", + + 'architectures' : { + 'epyc' : "AMD EPYC", + 'broadwell' : "Intel Broadwell", + 'skylake' : "Intel Skylake", + 'saphirerapids' : "Intel Sapphire Rapids", + 'gpu' : "NVIDIA Tesla", }, + + 'base_path' : "/opt/apps/easybuild/systems/" } -base_path = Path("/opt/apps/easybuild/systems/") -def extract_easyconfigs_info(eb, software_path, stack): +#----------------------------------------- + +############################### +## EXTRACT EASYCONFIGS INFO ## +############################### + +def get_software_stack(software_path, hwd_data): + stack = [] + + for eb in software_path.rglob("*.eb"): + if "reprod" in eb.parts: + continue + + print(eb) + extract_easyconfigs_info(eb, software_path, stack, hwd_data) + + return stack + + +def extract_easyconfigs_info(eb, software_path, stack, hwd_data): if eb.is_relative_to(software_path / "EasyBuild"): return stack try: - ecs = process_easyconfig(str(eb), validate = False) - - for ecdict in ecs: - ec = ecdict["ec"] + parser = EasyConfigParser(filename = str(eb)) + ec = parser.get_config_dict(validate = False) - package = { - "name": ec["name"], - "version": ec["version"], - "homepage": ec["homepage"], - "description": ec["description"], - "moduleclass": ec["moduleclass"], - } + package = { + "Name": ec.get("name"), + "Version": ec.get("version"), + "Homepage": ec.get("homepage"), + "Architectures": cluster_info["architectures"][hwd_data[1]], + "Clusters" : hwd_data[0], + "Description": ec.get("description"), + "Category": ec.get("moduleclass"), + } - stack.append(package) + stack.append(package) except Exception as excpt: print(f"Failed: {eb}: {excpt}") return stack -def get_software_stack(software_path): - stack = [] - options, cfg_settings = set_up_configuration(args=[]) - - for eb in software.rglob("*.eb"): - #print(eb) - extract_easyconfigs_info(eb, software_path, stack) - - return stack +#----------------------------------------- - -# with open("stack.json", "w") as fp: -# json.dump(stack, fp, indent=2, default=str) - -#stack = pd.read_json("stack.json") +########################## +## CLEAN AND MERGE DATA ## +########################## def homepage_link(text, url): if pd.notna(url) and url: return f"[{text}]({url})" return text -def get_softare_table(stack): +def get_software_table(stack): df = pd.DataFrame(stack) # Clean software descriptions - df["description"] = df["description"] + df["Description"] = (df["Description"] .fillna("") .str.replace(r"\s+", " ", regex=True) - .str.strip() - + .str.strip()) + # Combine versions for the same software df = df.groupby( - ["name", "homepage", "moduleclass", "description"], + ["Name", + "Homepage", + "Architectures", + "Clusters", + "Category", + "Description"], as_index=False ).agg({ - "version": ( lambda x: "
".join(sorted(list(set(x)))) ), + "Version": ( lambda x: "
".join(sorted(list(set(x)))) ), }) # Create Markdown hyperlinks - df["software"] = df.apply( - lambda row: homepage_link(row["name"], row["homepage"]), + df["Software"] = df.apply( + lambda row: homepage_link(row["Name"], row["Homepage"]), axis=1, ) + + return df - # Reorder columns - df = df[ +def merge_dataframes(stack, collapse_descr = True): + # Take all df corresponding to the same release + df = pd.concat(stack, ignore_index=True) + + # Group software available in different clusters and arch + merged_result = ( + df.groupby( + ["Software", "Version", "Category", "Description"], + as_index=False, + ) + .agg({ + "Architectures": lambda s:", ". join(sorted(set(s))), + "Clusters": lambda s:", ". join(sorted(set(s))), + }) + ) + + # Reorder data for Markdown table + merged_result = merged_result[ [ - "software", - "version", - "moduleclass", - "description", + "Software", + "Version", + "Architectures", + "Clusters", + "Category", + "Description", ] ] - # Sort alphabetically - df = df.sort_values(["software", "version"]) - - return df - -def set_nested_map(mp, entries, value): - if len(entries) == 0: - return dict() - - entry = entries.pop(0) - if len(entries) == 0: - mp[entry] = value - return mp + if collapse_descr == True: + merged_result["Description"] = merged_result["Description"].apply( + lambda d: ( + "
" + "Show" + f"{d}" + "
" + ) + ) + + return merged_result + + +#----------------------------------------- + +##################### +## MAIN FUNCTIONS ### +##################### + +def get_sotfware_tables(save_data = True): + clusters = os.listdir(cluster_info['base_path']) + clusters.remove('binary') + + stack = {} + for rel in cluster_info['releases']: + stack[rel] = [] + for cl in clusters: + hwd_data = [cl, None] + archs = os.listdir(str(Path(cluster_info['base_path']) / cl / cluster_info['build'] / rel)) + for arch in archs: + hwd_data[1] = arch + full_path = f"{cluster_info['base_path']}{cl}/{cluster_info['build']}/{rel}/{arch}/software/" + tmp_stack = get_software_stack(Path(full_path), hwd_data) + stack[rel].append(get_software_table(tmp_stack)) + result = merge_dataframes(stack[rel]) + + if save_data == True: + with open(f"{rel}.md", "w") as f: + f.write(result.to_markdown(index = False)) - if len(mp) == 0: - mp[entry] = dict() - - val = setup_map(mp[entry], entries, value) - mp[entry] = val - - return mp - -def get_software_tables(): - software_tables = dict() - - for machine in software.keys(): - for arch in software[machine].keys(): - for version in software[machine][arch].keys(): - if software[machine][arch][version] is not None: - build_number = software[machine][arch][version] - software_path = base_path / machine / arch / version / build_number / "software" - stack = get_software_stack(software_path) - table = get_softare_table(stack) - - # One build per (machine, arch, version) in release! - software_tables = set_nested_map(software_tables, [machine, arch, version], table) +## Keep JSON too +#df.to_json("stack.json", orient="records", indent=2) - return software_tables +#----------------------------------------- -## Write Markdown -#with open("stack.md", "w") as f: -# f.write(df.to_markdown(index=False)) +def main(): + options, cfg_settings = set_up_configuration(args=[]) + get_sotfware_tables() + +if __name__ == "__main__": + main() -## Keep JSON too -#df.to_json("stack.json", orient="records", indent=2) From a4034109d5509f9007a0c75d822fe3b78a0efc5a Mon Sep 17 00:00:00 2001 From: Georgios Kafanas Date: Tue, 18 Aug 2026 11:40:42 +0200 Subject: [PATCH 08/20] [STYLE] Remove useless comments --- scripts/eb_metadata.py | 22 ---------------------- 1 file changed, 22 deletions(-) diff --git a/scripts/eb_metadata.py b/scripts/eb_metadata.py index d3f075ed1..1343e4516 100644 --- a/scripts/eb_metadata.py +++ b/scripts/eb_metadata.py @@ -33,12 +33,6 @@ 'base_path' : "/opt/apps/easybuild/systems/" } -#----------------------------------------- - -############################### -## EXTRACT EASYCONFIGS INFO ## -############################### - def get_software_stack(software_path, hwd_data): stack = [] @@ -77,12 +71,6 @@ def extract_easyconfigs_info(eb, software_path, stack, hwd_data): return stack -#----------------------------------------- - -########################## -## CLEAN AND MERGE DATA ## -########################## - def homepage_link(text, url): if pd.notna(url) and url: return f"[{text}]({url})" @@ -158,13 +146,6 @@ def merge_dataframes(stack, collapse_descr = True): return merged_result - -#----------------------------------------- - -##################### -## MAIN FUNCTIONS ### -##################### - def get_sotfware_tables(save_data = True): clusters = os.listdir(cluster_info['base_path']) clusters.remove('binary') @@ -189,12 +170,9 @@ def get_sotfware_tables(save_data = True): ## Keep JSON too #df.to_json("stack.json", orient="records", indent=2) -#----------------------------------------- - def main(): options, cfg_settings = set_up_configuration(args=[]) get_sotfware_tables() if __name__ == "__main__": main() - From 97676eae20da695f5ae68d5276f51399f1f918e3 Mon Sep 17 00:00:00 2001 From: Georgios Kafanas Date: Tue, 18 Aug 2026 11:50:53 +0200 Subject: [PATCH 09/20] [REFACTOR] Remove unused imports --- scripts/eb_metadata.py | 1 - 1 file changed, 1 deletion(-) diff --git a/scripts/eb_metadata.py b/scripts/eb_metadata.py index 1343e4516..068e5e0b9 100644 --- a/scripts/eb_metadata.py +++ b/scripts/eb_metadata.py @@ -1,5 +1,4 @@ import json -import socket import os from pathlib import Path From 4a3bf80aa7e5dbab03950691e3ae99cebb97d480 Mon Sep 17 00:00:00 2001 From: Georgios Kafanas Date: Tue, 18 Aug 2026 14:23:53 +0200 Subject: [PATCH 10/20] [STYLE] Remove deprecated import The process_easyconfig uses EasyConfigParser internally. In this commit we use the EasyConfigParser directly as process_easyconfig does a lot of extra work that is not necessary. --- scripts/eb_metadata.py | 1 - 1 file changed, 1 deletion(-) diff --git a/scripts/eb_metadata.py b/scripts/eb_metadata.py index 068e5e0b9..4eab16bc1 100644 --- a/scripts/eb_metadata.py +++ b/scripts/eb_metadata.py @@ -3,7 +3,6 @@ from pathlib import Path from easybuild.tools.options import set_up_configuration -from easybuild.framework.easyconfig.easyconfig import process_easyconfig from easybuild.framework.easyconfig.parser import EasyConfigParser import pandas as pd From db45a1525e2ab01d3ed39681faae8aefd96aa9d2 Mon Sep 17 00:00:00 2001 From: Georgios Kafanas Date: Tue, 18 Aug 2026 14:31:15 +0200 Subject: [PATCH 11/20] [REFACTOR] Remove dead code --- scripts/eb_metadata.py | 2 -- 1 file changed, 2 deletions(-) diff --git a/scripts/eb_metadata.py b/scripts/eb_metadata.py index 4eab16bc1..0e01ec7b3 100644 --- a/scripts/eb_metadata.py +++ b/scripts/eb_metadata.py @@ -2,7 +2,6 @@ import os from pathlib import Path -from easybuild.tools.options import set_up_configuration from easybuild.framework.easyconfig.parser import EasyConfigParser import pandas as pd @@ -169,7 +168,6 @@ def get_sotfware_tables(save_data = True): #df.to_json("stack.json", orient="records", indent=2) def main(): - options, cfg_settings = set_up_configuration(args=[]) get_sotfware_tables() if __name__ == "__main__": From 2aaa851a8fc8c4d539756d6f65d5bb0225898dc2 Mon Sep 17 00:00:00 2001 From: Georgios Kafanas Date: Tue, 18 Aug 2026 14:33:36 +0200 Subject: [PATCH 12/20] [STYLE] Reorganize inclusions System inclusions go first. --- scripts/eb_metadata.py | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/scripts/eb_metadata.py b/scripts/eb_metadata.py index 0e01ec7b3..9438f4573 100644 --- a/scripts/eb_metadata.py +++ b/scripts/eb_metadata.py @@ -1,9 +1,8 @@ import json import os +import pandas as pd from pathlib import Path - from easybuild.framework.easyconfig.parser import EasyConfigParser -import pandas as pd #----------------------------------------- # Run only with Easybuild versions 5.3.x or above From 41c239ebd292a5fd750ca25fcb3668b2dca9a060 Mon Sep 17 00:00:00 2001 From: Georgios Kafanas Date: Tue, 18 Aug 2026 21:51:36 +0200 Subject: [PATCH 13/20] [REFACTOR] Use bracket access to access mandatory fields of easyconfigs We would like the code to fails if mandatory fields are missing. We also store the toolchain version in the easyconfig dictionary, the toolchain versions will diverge from the releases in the future. Sources: - https://docs.easybuild.io/writing-easyconfig-files/#mandatory-easyconfig-parameters --- scripts/eb_metadata.py | 29 +++++++++++++++++++---------- 1 file changed, 19 insertions(+), 10 deletions(-) diff --git a/scripts/eb_metadata.py b/scripts/eb_metadata.py index 9438f4573..266ee58b2 100644 --- a/scripts/eb_metadata.py +++ b/scripts/eb_metadata.py @@ -41,6 +41,11 @@ def get_software_stack(software_path, hwd_data): return stack +def toolchain_to_string(toolchain): + if toolchain["name"] == "system": + return "" + + return "{name}-{version}".format(name = toolchain["name"], version = toolchain["version"]) def extract_easyconfigs_info(eb, software_path, stack, hwd_data): if eb.is_relative_to(software_path / "EasyBuild"): @@ -51,12 +56,13 @@ def extract_easyconfigs_info(eb, software_path, stack, hwd_data): ec = parser.get_config_dict(validate = False) package = { - "Name": ec.get("name"), - "Version": ec.get("version"), - "Homepage": ec.get("homepage"), + "Name": ec["name"], + "Version": ec["version"], + "Homepage": ec["homepage"], + "Description": ec["description"], + "Toolchain": toolchain_to_string(ec["toolchain"]) "Architectures": cluster_info["architectures"][hwd_data[1]], "Clusters" : hwd_data[0], - "Description": ec.get("description"), "Category": ec.get("moduleclass"), } @@ -83,12 +89,15 @@ def get_software_table(stack): # Combine versions for the same software df = df.groupby( - ["Name", - "Homepage", - "Architectures", - "Clusters", - "Category", - "Description"], + [ + "Name", + "Homepage", + "Architectures", + "Clusters", + "Category", + "Description", + "Toolchain", + ], as_index=False ).agg({ "Version": ( lambda x: "
".join(sorted(list(set(x)))) ), From 5cc0bced2f269772cd0298ffb2b2da42b6e6a987 Mon Sep 17 00:00:00 2001 From: Georgios Kafanas Date: Tue, 18 Aug 2026 23:02:51 +0200 Subject: [PATCH 14/20] [REFACTOR] Use explicit dictionary constructor --- scripts/eb_metadata.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/scripts/eb_metadata.py b/scripts/eb_metadata.py index 266ee58b2..fa9b51a9d 100644 --- a/scripts/eb_metadata.py +++ b/scripts/eb_metadata.py @@ -155,7 +155,7 @@ def get_sotfware_tables(save_data = True): clusters = os.listdir(cluster_info['base_path']) clusters.remove('binary') - stack = {} + stack = dict() for rel in cluster_info['releases']: stack[rel] = [] for cl in clusters: From ad2010c36dc303f517f4d67caf99b46f6195d645 Mon Sep 17 00:00:00 2001 From: Georgios Kafanas Date: Thu, 20 Aug 2026 11:19:22 +0200 Subject: [PATCH 15/20] [DEMO] Add example of how the software tables should be structured --- docs/software/swsets/2025a.md | 307 ++-------------------------------- 1 file changed, 12 insertions(+), 295 deletions(-) diff --git a/docs/software/swsets/2025a.md b/docs/software/swsets/2025a.md index df4fc2d3e..396d1f824 100644 --- a/docs/software/swsets/2025a.md +++ b/docs/software/swsets/2025a.md @@ -1,295 +1,12 @@ -| Software | Version | Architectures | Clusters | Category | Description | -|:------------------------------------------------------------------------------------------------------|:-----------------|:-------------------------------------------------------|:-----------|:-----------|:-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------| -| [AOCL-BLAS](https://github.com/amd/blis) | 5.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | numlib |
ShowAOCL-BLAS is AMD's optimized version of BLAS targeted for AMD EPYC and Ryzen CPUs.
| -| [Abseil](https://abseil.io/) | 20250512.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowAbseil is an open-source collection of C++ library code designed to augment the C++ standard library. The Abseil library code is collected from Google's own C++ code base, has been extensively tested and used in production, and is the same code we depend on in our daily coding lives.
| -| [Armadillo](https://arma.sourceforge.net/) | 14.6.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | numlib |
ShowArmadillo is an open-source C++ linear algebra library (matrix maths) aiming towards a good balance between speed and ease of use. Integer, floating point and complex numbers are supported, as well as a subset of trigonometric and statistics functions.
| -| [Arrow](https://arrow.apache.org) | 22.0.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | data |
ShowApache Arrow (incl. PyArrow Python bindings), a cross-language development platform for in-memory data.
| -| [Autoconf](https://www.gnu.org/software/autoconf/) | 2.72 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | devel |
ShowAutoconf is an extensible package of M4 macros that produce shell scripts to automatically configure software source code packages. These scripts can adapt the packages to many kinds of UNIX-like systems without manual user intervention. Autoconf creates a configuration script for a package from a template file that lists the operating system features that the package can use, in the form of M4 macro calls.
| -| [Automake](https://www.gnu.org/software/automake/automake.html) | 1.16.5 | NVIDIA Tesla | iris | devel |
ShowAutomake: GNU Standards-compliant Makefile generator
| -| [Automake](https://www.gnu.org/software/automake/automake.html) | 1.17 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | devel |
ShowAutomake: GNU Standards-compliant Makefile generator
| -| [Autotools](https://autotools.io) | 20231222 | NVIDIA Tesla | iris | devel |
ShowThis bundle collect the standard GNU build tools: Autoconf, Automake and libtool
| -| [Autotools](https://autotools.io) | 20240712 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | devel |
ShowThis bundle collect the standard GNU build tools: Autoconf, Automake and libtool
| -| [BLIS](https://github.com/flame/blis/) | 1.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | numlib |
ShowBLIS is a portable software framework for instantiating high-performance BLAS-like dense linear algebra libraries.
| -| [Bison](https://www.gnu.org/software/bison) | 3.8.2 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | lang |
ShowBison is a general-purpose parser generator that converts an annotated context-free grammar into a deterministic LR or generalized LR (GLR) parser employing LALR(1) parser tables.
| -| [Boost](https://www.boost.org/) | 1.88.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | devel |
ShowBoost provides free peer-reviewed portable C++ source libraries.
| -| [Brotli](https://github.com/google/brotli) | 1.1.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowBrotli is a generic-purpose lossless compression algorithm that compresses data using a combination of a modern variant of the LZ77 algorithm, Huffman coding and 2nd order context modeling, with a compression ratio comparable to the best currently available general-purpose compression methods. It is similar in speed with deflate but offers more dense compression. The specification of the Brotli Compressed Data Format is defined in RFC 7932.
| -| [Brunsli](https://github.com/google/brunsli/) | 0.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowBrunsli is a lossless JPEG repacking library.
| -| [CFITSIO](https://heasarc.gsfc.nasa.gov/fitsio/) | 4.6.2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowCFITSIO is a library of C and Fortran subroutines for reading and writing data files in FITS (Flexible Image Transport System) data format.
| -| [CMake](https://www.cmake.org) | 3.31.3 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | devel |
ShowCMake, the cross-platform, open-source build system. CMake is a family of tools designed to build, test and package software.
| -| [CUDA](https://developer.nvidia.com/cuda-toolkit) | 12.6.0 | NVIDIA Tesla | iris | system |
ShowCUDA (formerly Compute Unified Device Architecture) is a parallel computing platform and programming model created by NVIDIA and implemented by the graphics processing units (GPUs) that they produce. CUDA gives developers access to the virtual instruction set and memory of the parallel computational elements in CUDA GPUs.
| -| [Catch2](https://github.com/catchorg/Catch2) | 2.13.10 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowA modern, C++-native, header-only, test framework for unit-tests, TDD and BDD - using C++11, C++14, C++17 and later
| -| [Cbc](https://github.com/coin-or/Cbc) | 2.10.12 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | math |
ShowCbc (Coin-or branch and cut) is an open-source mixed integer linear programming solver written in C++. It can be used as a callable library or using a stand-alone executable.
| -| [Cgl](https://github.com/coin-or/Cgl) | 0.60.9 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | math |
ShowThe COIN-OR Cut Generation Library (Cgl) is a collection of cut generators that can be used with other COIN-OR packages that make use of cuts, such as, among others, the linear solver Clp or the mixed integer linear programming solvers Cbc or BCP. Cgl uses the abstract class OsiSolverInterface (see Osi) to use or communicate with a solver. It does not directly call a solver.
| -| [Check](https://libcheck.github.io/check/) | 0.15.2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowCheck is a unit testing framework for C. It features a simple interface for defining unit tests, putting little in the way of the developer. Tests are run in a separate address space, so both assertion failures and code errors that cause segmentation faults or other signals can be caught. Test results are reportable in the following: Subunit, TAP, XML, and a generic logging format.
| -| [Clp](https://github.com/coin-or/Clp) | 1.17.10 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | math |
ShowClp (Coin-or linear programming) is an open-source linear programming solver. It is primarily meant to be used as a callable library, but a basic, stand-alone executable version is also available.
| -| [CoinUtils](https://github.com/coin-or/CoinUtils) | 2.11.12 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | math |
ShowCoinUtils (Coin-OR Utilities) is an open-source collection of classes and functions that are generally useful to more than one COIN-OR project.
| -| [CubeLib](https://www.scalasca.org/software/cube-4.x/download.html) | 4.9 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | perf |
ShowCube, which is used as performance report explorer for Scalasca and Score-P, is a generic tool for displaying a multi-dimensional performance space consisting of the dimensions (i) performance metric, (ii) call path, and (iii) system resource. Each dimension can be represented as a tree, where non-leaf nodes of the tree can be collapsed or expanded to achieve the desired level of granularity. This module provides the Cube general purpose C++ library component and command-line tools.
| -| [CubeWriter](https://www.scalasca.org/software/cube-4.x/download.html) | 4.9 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | perf |
ShowCube, which is used as performance report explorer for Scalasca and Score-P, is a generic tool for displaying a multi-dimensional performance space consisting of the dimensions (i) performance metric, (ii) call path, and (iii) system resource. Each dimension can be represented as a tree, where non-leaf nodes of the tree can be collapsed or expanded to achieve the desired level of granularity. This module provides the Cube high-performance C writer library component.
| -| [Cython](https://cython.org/) | 3.1.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lang |
ShowCython is an optimising static compiler for both the Python programming language and the extended Cython programming language (based on Pyrex).
| -| [DBus](https://dbus.freedesktop.org/) | 1.16.2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | devel |
ShowD-Bus is a message bus system, a simple way for applications to talk to one another. In addition to interprocess communication, D-Bus helps coordinate process lifecycle; it makes it simple and reliable to code a "single instance" application or daemon, and to launch applications and daemons on demand when their services are needed.
| -| [Doxygen](https://www.doxygen.nl) | 1.14.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | devel |
ShowDoxygen is a documentation system for C++, C, Java, Objective-C, Python, IDL (Corba and Microsoft flavors), Fortran, VHDL, PHP, C#, and to some extent D.
| -| [ELPA](https://elpa.mpcdf.mpg.de/) | 2025.01.002 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | math |
ShowEigenvalue SoLvers for Petaflop-Applications.
| -| [Eigen](https://eigen.tuxfamily.org) | 3.4.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | math |
ShowEigen is a C++ template library for linear algebra: matrices, vectors, numerical solvers, and related algorithms.
| -| [FFTW.MPI](https://www.fftw.org) | 3.3.10 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | numlib |
ShowFFTW is a C subroutine library for computing the discrete Fourier transform (DFT) in one or more dimensions, of arbitrary input size, and of both real and complex data.
| -| [FFTW](https://www.fftw.org) | 3.3.10 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | numlib |
ShowFFTW is a C subroutine library for computing the discrete Fourier transform (DFT) in one or more dimensions, of arbitrary input size, and of both real and complex data.
| -| [FFmpeg](https://www.ffmpeg.org/) | 7.1.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | vis |
ShowA complete, cross-platform solution to record, convert and stream audio and video.
| -| [FLAC](https://xiph.org/flac/) | 1.5.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowFLAC stands for Free Lossless Audio Codec, an audio format similar to MP3, but lossless, meaning that audio is compressed in FLAC without any loss in quality.
| -| [FLTK](https://www.fltk.org) | 1.4.4 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | vis |
ShowFLTK is a cross-platform C++ GUI toolkit for UNIX/Linux (X11), Microsoft Windows, and MacOS X. FLTK provides modern GUI functionality without the bloat and supports 3D graphics via OpenGL and its built-in GLUT emulation.
| -| [FlexiBLAS](https://gitlab.mpi-magdeburg.mpg.de/software/flexiblas-release) | 3.4.5 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowFlexiBLAS is a wrapper library that enables the exchange of the BLAS and LAPACK implementation used by a program without recompiling or relinking it.
| -| [FreeImage](http://freeimage.sourceforge.net) | 3.18.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | vis |
ShowFreeImage is an Open Source library project for developers who would like to support popular graphics image formats like PNG, BMP, JPEG, TIFF and others as needed by today's multimedia applications. FreeImage is easy to use, fast, multithreading safe.
| -| [FriBidi](https://github.com/fribidi/fribidi) | 1.0.16 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lang |
ShowThe Free Implementation of the Unicode Bidirectional Algorithm.
| -| [GCC](https://gcc.gnu.org/) | 14.2.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | compiler |
ShowThe GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,...).
| -| [GCCcore](https://gcc.gnu.org/) | 13.3.0 | NVIDIA Tesla | iris | compiler |
ShowThe GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,...).
| -| [GCCcore](https://gcc.gnu.org/) | 14.2.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | compiler |
ShowThe GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,...).
| -| [GDAL](https://www.gdal.org) | 3.11.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | data |
ShowGDAL is a translator library for raster geospatial data formats that is released under an X/MIT style Open Source license by the Open Source Geospatial Foundation. As a library, it presents a single abstract data model to the calling application for all supported formats. It also comes with a variety of useful commandline utilities for data translation and processing.
| -| [GDB](https://www.gnu.org/software/gdb/gdb.html) | 16.3 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | debugger |
ShowThe GNU Project Debugger
| -| [GEOS](https://trac.osgeo.org/geos) | 3.13.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | math |
ShowGEOS (Geometry Engine - Open Source) is a C++ port of the Java Topology Suite (JTS)
| -| [GLPK](https://www.gnu.org/software/glpk/) | 5.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
ShowThe GLPK (GNU Linear Programming Kit) package is intended for solving large-scale linear programming (LP), mixed integer programming (MIP), and other related problems. It is a set of routines written in ANSI C and organized in the form of a callable library.
| -| [GLib](https://www.gtk.org/) | 2.85.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | vis |
ShowGLib is one of the base libraries of the GTK+ project
| -| [GMP](https://gmplib.org/) | 6.3.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | math |
ShowGMP is a free library for arbitrary precision arithmetic, operating on signed integers, rational numbers, and floating point numbers.
| -| [GOTCHA](https://gotcha.readthedocs.io/en/latest/) | 1.0.8 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | devel |
ShowGotcha is a library that wraps functions. Tools can use gotcha to install hooks into other libraries, for example putting a wrapper function around libc's malloc. It is similar to LD_PRELOAD, but operates via a programmable API. This enables easy methods of accomplishing tasks like code instrumentation or wholesale replacement of mechanisms in programs without disrupting their source code.
| -| [GObject-Introspection](https://gi.readthedocs.io/en/latest/) | 1.84.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | devel |
ShowGObject introspection is a middleware layer between C libraries (using GObject) and language bindings. The C library can be scanned at compile time and generate a metadata file, in addition to the actual native C library. Then at runtime, language bindings can read this metadata and automatically provide bindings to call into the C library.
| -| [GROMACS](https://www.gromacs.org) | 2025.2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | bio |
ShowGROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles. This is a CPU only build, containing both MPI and threadMPI binaries for both single and double precision. It also contains the gmxapi extension for the single precision MPI build.
| -| [GSL](https://www.gnu.org/software/gsl/) | 2.8 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | numlib |
ShowThe GNU Scientific Library (GSL) is a numerical library for C and C++ programmers. The library provides a wide range of mathematical routines such as random number generators, special functions and least-squares fitting.
| -| [Gdk-Pixbuf](https://docs.gtk.org/gdk-pixbuf/) | 2.42.12 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | vis |
ShowThe Gdk Pixbuf is a toolkit for image loading and pixel buffer manipulation. It is used by GTK+ 2 and GTK+ 3 to load and manipulate images. In the past it was distributed as part of GTK+ 2 but it was split off into a separate package in preparation for the change to GTK+ 3.
| -| [Ghostscript](https://ghostscript.com) | 10.05.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
ShowGhostscript is a versatile processor for PostScript data with the ability to render PostScript to different targets. It used to be part of the cups printing stack, but is no longer used for that.
| -| [GitPython](https://gitpython.readthedocs.org) | 3.1.45 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowGitPython is a python library used to interact with Git repositories
| -| [Go](https://www.golang.org) | 1.25.3 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | compiler |
ShowGo is an open source programming language that makes it easy to build simple, reliable, and efficient software.
| -| [HDF5](https://portal.hdfgroup.org/display/support) | 1.14.6 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | data |
ShowHDF5 is a data model, library, and file format for storing and managing data. It supports an unlimited variety of datatypes, and is designed for flexible and efficient I/O and for high volume and complex data.
| -| [HDF](https://support.hdfgroup.org/products/hdf4/) | 4.3.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | data |
ShowHDF (also known as HDF4) is a library and multi-object file format for storing and managing data between machines.
| -| [HarfBuzz](https://www.freedesktop.org/wiki/Software/HarfBuzz) | 11.2.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | vis |
ShowHarfBuzz is an OpenType text shaping engine.
| -| [Hypre](https://computation.llnl.gov/projects/hypre-scalable-linear-solvers-multigrid-methods) | 2.33.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | numlib |
ShowHypre is a library for solving large, sparse linear systems of equations on massively parallel computers. The problems of interest arise in the simulation codes being developed at LLNL and elsewhere to study physical phenomena in the defense, environmental, energy, and biological sciences.
| -| [ICU](https://icu.unicode.org) | 76.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowICU is a mature, widely used set of C/C++ and Java libraries providing Unicode and Globalization support for software applications.
| -| [IPython](https://ipython.org/index.html) | 9.3.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
ShowIPython provides a rich architecture for interactive computing with: Powerful interactive shells (terminal and Qt-based). A browser-based notebook with support for code, text, mathematical expressions, inline plots and other rich media. Support for interactive data visualization and use of GUI toolkits. Flexible, embeddable interpreters to load into your own projects. Easy to use, high performance tools for parallel computing.
| -| [ISL](https://libisl.sourceforge.io) | 0.27 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | math |
Showisl is a library for manipulating sets and relations of integer points bounded by linear constraints.
| -| [ImageMagick](https://www.imagemagick.org/) | 7.1.1-47 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | vis |
ShowImageMagick is a software suite to create, edit, compose, or convert bitmap images
| -| [Imath](https://imath.readthedocs.io/en/latest/) | 3.1.12 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowImath is a C++ and python library of 2D and 3D vector, matrix, and math operations for computer graphics
| -| [JasPer](https://www.ece.uvic.ca/~frodo/jasper/) | 4.2.5 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | vis |
ShowThe JasPer Project is an open-source initiative to provide a free software-based reference implementation of the codec specified in the JPEG-2000 Part-1 standard.
| -| [Java](https://java.com/) | 21
25 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lang |
ShowJava Platform, Standard Edition (Java SE) lets you develop and deploy Java applications on desktops and servers.
| -| [Java](https://openjdk.org) | 21.0.8
25.36 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lang |
ShowJava Platform, Standard Edition (Java SE) lets you develop and deploy Java applications on desktops and servers.
| -| [LAME](http://lame.sourceforge.net/) | 3.100 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | data |
ShowLAME is a high quality MPEG Audio Layer III (MP3) encoder licensed under the LGPL.
| -| [LERC](https://github.com/Esri/lerc) | 4.0.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowLERC is an open-source image or raster format which supports rapid encoding and decoding for any pixel type (not just RGB or Byte). Users set the maximum compression error per pixel while encoding, so the precision of the original input image is preserved (within user defined error bounds).
| -| [LLVM](https://llvm.org/) | 20.1.7 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | compiler |
ShowThe LLVM Core libraries provide a modern source- and target-independent optimizer, along with code generation support for many popular CPUs (as well as some less common ones!) These libraries are built around a well specified code representation known as the LLVM intermediate representation ("LLVM IR"). The LLVM Core libraries are well documented, and it is particularly easy to invent your own language (or port an existing compiler) to use LLVM as an optimizer and code generator.
| -| [LibRaw](https://www.libraw.org/) | 0.21.4 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | vis |
ShowThe LibRaw library provides a simple and unified interface for extracting out of RAW files generated by digital photo cameras the following: - RAW data (pixel values) - Metadata necessary for processing RAW (geometry, CFA / Bayer pattern, black level, white balance, etc.) - Embedded preview / thumbnail.
| -| [LibTIFF](https://libtiff.gitlab.io/libtiff/) | 4.7.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
Showtiff: Library and tools for reading and writing TIFF data files
| -| [LittleCMS](https://www.littlecms.com/) | 2.17 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | vis |
ShowLittle CMS intends to be an OPEN SOURCE small-footprint color management engine, with special focus on accuracy and performance.
| -| [Lua](https://www.lua.org/) | 5.4.8 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lang |
ShowLua is a powerful, fast, lightweight, embeddable scripting language. Lua combines simple procedural syntax with powerful data description constructs based on associative arrays and extensible semantics. Lua is dynamically typed, runs by interpreting bytecode for a register-based virtual machine, and has automatic memory management with incremental garbage collection, making it ideal for configuration, scripting, and rapid prototyping.
| -| [M4](https://www.gnu.org/software/m4/m4.html) | 1.4.19 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | devel |
ShowGNU M4 is an implementation of the traditional Unix macro processor. It is mostly SVR4 compatible although it has some extensions (for example, handling more than 9 positional parameters to macros). GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, etc.
| -| [METIS](https://karypis.github.io/glaros/projects/gp.html) | 5.1.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | math |
ShowMETIS is a set of serial programs for partitioning graphs, partitioning finite element meshes, and producing fill reducing orderings for sparse matrices. The algorithms implemented in METIS are based on the multilevel recursive-bisection, multilevel k-way, and multi-constraint partitioning schemes.
| -| [MPC](http://www.multiprecision.org/) | 1.3.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | math |
ShowGnu Mpc is a C library for the arithmetic of complex numbers with arbitrarily high precision and correct rounding of the result. It extends the principles of the IEEE-754 standard for fixed precision real floating point numbers to complex numbers, providing well-defined semantics for every operation. At the same time, speed of operation at high precision is a major design goal.
| -| [MPFR](https://www.mpfr.org) | 4.2.2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | math |
ShowThe MPFR library is a C library for multiple-precision floating-point computations with correct rounding.
| -| [MUMPS](https://mumps-solver.org) | 5.8.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | math |
ShowA parallel sparse direct solver
| -| [Mako](https://www.makotemplates.org) | 1.3.10 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | devel |
ShowA super-fast templating language that borrows the best ideas from the existing templating languages
| -| [Mesa](https://www.mesa3d.org/) | 25.1.3 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | vis |
ShowMesa is an open-source implementation of the OpenGL specification - a system for rendering interactive 3D graphics.
| -| [Meson](https://mesonbuild.com) | 1.6.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
ShowMeson is a cross-platform build system designed to be both as fast and as user friendly as possible.
| -| [NASM](https://www.nasm.us/) | 2.16.03 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lang |
ShowNASM: General-purpose x86 assembler
| -| [NLopt](https://nlopt.readthedocs.io/en/latest/) | 2.10.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | numlib |
ShowNLopt is a free/open-source library for nonlinear optimization, providing a common interface for a number of different free optimization routines available online as well as original implementations of various other algorithms.
| -| [NSPR](https://developer.mozilla.org/en-US/docs/Mozilla/Projects/NSPR) | 4.36 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowNetscape Portable Runtime (NSPR) provides a platform-neutral API for system level and libc-like functions.
| -| [NSS](https://developer.mozilla.org/en-US/docs/Mozilla/Projects/NSS) | 3.113 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowNetwork Security Services (NSS) is a set of libraries designed to support cross-platform development of security-enabled client and server applications.
| -| [NVHPC](https://developer.nvidia.com/hpc-sdk/) | 25.1 | NVIDIA Tesla | iris | toolchain |
ShowComplete toolchain based on NVIDIA HPC SDK. Includes C, C++ and FORTRAN compilers (nvidia-compilers), an MPI implementation based on OpenMPI (NVHPCX) and math libraries based on OpenBLAS and ScaLAPACK.
| -| [Nextflow](https://www.nextflow.io/) | 25.10.2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
ShowNextflow is a reactive workflow framework and a programming DSL that eases writing computational pipelines with complex data
| -| [Ninja](https://ninja-build.org/) | 1.12.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
ShowNinja is a small build system with a focus on speed.
| -| [OPARI2](https://www.score-p.org) | 2.0.9 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | perf |
ShowOPARI2, the successor of Forschungszentrum Juelich's OPARI, is a source-to-source instrumentation tool for OpenMP and hybrid codes. It surrounds OpenMP directives and runtime library calls with calls to the POMP2 measurement interface.
| -| [OSPRay](https://www.ospray.org) | 2.12.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | vis |
ShowOpen, Scalable, and Portable Ray Tracing Engine
| -| [OSU-Micro-Benchmarks](https://mvapich.cse.ohio-state.edu/benchmarks/) | 7.5 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | perf |
ShowOSU Micro-Benchmarks
| -| [OTF2](https://www.score-p.org) | 3.1.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | perf |
ShowThe Open Trace Format 2 is a highly scalable, memory efficient event trace data format plus support library. It is the new standard trace format for Scalasca, Vampir, and TAU and is open for other tools.
| -| [OpenBLAS](https://www.openblas.net/) | 0.3.29 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | numlib |
ShowOpenBLAS is an optimized BLAS library based on GotoBLAS2 1.13 BSD version.
| -| [OpenEXR](https://www.openexr.com/) | 3.3.4 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | vis |
ShowOpenEXR is a high dynamic-range (HDR) image file format developed by Industrial Light & Magic for use in computer imaging applications
| -| [OpenJPEG](https://www.openjpeg.org/) | 2.5.3 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowOpenJPEG is an open-source JPEG 2000 codec written in C language. It has been developed in order to promote the use of JPEG 2000, a still-image compression standard from the Joint Photographic Experts Group (JPEG). Since may 2015, it is officially recognized by ISO/IEC and ITU-T as a JPEG 2000 Reference Software.
| -| [OpenMPI](https://www.open-mpi.org/) | 5.0.7 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | mpi |
ShowThe Open MPI Project is an open source MPI-3 implementation.
| -| [OpenPGM](https://code.google.com/p/openpgm/) | 5.2.122 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | system |
ShowOpenPGM is an open source implementation of the Pragmatic General Multicast (PGM) specification in RFC 3208 available at www.ietf.org. PGM is a reliable and scalable multicast protocol that enables receivers to detect loss, request retransmission of lost data, or notify an application of unrecoverable loss. PGM is a receiver-reliable protocol, which means the receiver is responsible for ensuring all data is received, absolving the sender of reception responsibility.
| -| [OpenSSL](https://www.openssl.org/) | 3 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | system |
ShowThe OpenSSL Project is a collaborative effort to develop a robust, commercial-grade, full-featured, and Open Source toolchain implementing the Secure Sockets Layer (SSL v2/v3) and Transport Layer Security (TLS v1) protocols as well as a full-strength general purpose cryptography library.
| -| [Osi](https://github.com/coin-or/Osi) | 0.108.11 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | math |
ShowOsi (Open Solver Interface) provides an abstract base class to a generic linear programming (LP) solver, along with derived classes for specific solvers. Many applications may be able to use the Osi to insulate themselves from a specific LP solver. That is, programs written to the OSI standard may be linked to any solver with an OSI interface and should produce correct results. The OSI has been significantly extended compared to its first incarnation. Currently, the OSI supports linear programming solvers and has rudimentary support for integer programming.
| -| [PCRE2](https://www.pcre.org/) | 10.45 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | devel |
ShowThe PCRE library is a set of functions that implement regular expression pattern matching using the same syntax and semantics as Perl 5.
| -| [PCRE](https://www.pcre.org/) | 8.45 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | devel |
ShowThe PCRE library is a set of functions that implement regular expression pattern matching using the same syntax and semantics as Perl 5.
| -| [PETSc](https://www.mcs.anl.gov/petsc) | 3.23.5 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | numlib |
ShowPETSc, pronounced PET-see (the S is silent), is a suite of data structures and routines for the scalable (parallel) solution of scientific applications modeled by partial differential equations.
| -| [PLUMED](https://www.plumed.org) | 2.9.4 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | chem |
ShowPLUMED is an open source library for free energy calculations in molecular systems which works together with some of the most popular molecular dynamics engines. Free energy calculations can be performed as a function of many order parameters with a particular focus on biological problems, using state of the art methods such as metadynamics, umbrella sampling and Jarzynski-equation based steered MD. The software, written in C++, can be easily interfaced with both fortran and C/C++ codes.
| -| [PMIx](https://pmix.org/) | 5.0.6 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowProcess Management for Exascale Environments PMI Exascale (PMIx) represents an attempt to provide an extended version of the PMI standard specifically designed to support clusters up to and including exascale sizes. The overall objective of the project is not to branch the existing pseudo-standard definitions - in fact, PMIx fully supports both of the existing PMI-1 and PMI-2 APIs - but rather to (a) augment and extend those APIs to eliminate some current restrictions that impact scalability, and (b) provide a reference implementation of the PMI-server that demonstrates the desired level of scalability.
| -| [PROJ](https://proj.org) | 9.6.2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowProgram proj is a standard Unix filter function which converts geographic longitude and latitude coordinates into cartesian coordinates
| -| [PRRTE](https://docs.prrte.org/) | 3.0.8 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowPRRTE is the PMIx Reference RunTime Environment
| -| [Pango](https://www.pango.org/) | 1.56.3 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | vis |
ShowPango is a library for laying out and rendering of text, with an emphasis on internationalization. Pango can be used anywhere that text layout is needed, though most of the work on Pango so far has been done in the context of the GTK+ widget toolkit. Pango forms the core of text and font handling for GTK+-2.x.
| -| [ParMETIS](https://karypis.github.io/glaros/projects/gp.html) | 4.0.3 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | math |
ShowParMETIS is an MPI-based parallel library that implements a variety of algorithms for partitioning unstructured graphs, meshes, and for computing fill-reducing orderings of sparse matrices. ParMETIS extends the functionality provided by METIS and includes routines that are especially suited for parallel AMR computations and large scale numerical simulations. The algorithms implemented in ParMETIS are based on the parallel multilevel k-way graph-partitioning, adaptive repartitioning, and parallel multi-constrained partitioning schemes.
| -| [ParaView](https://www.paraview.org) | 6.0.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | vis |
ShowParaView is a scientific parallel visualizer.
| -| [Perl-bundle-CPAN](https://www.perl.org/) | 5.40.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lang |
ShowA set of common packages from CPAN
| -| [Perl](https://www.perl.org/) | 5.38.0
5.40.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lang |
ShowLarry Wall's Practical Extraction and Report Language Includes a small selection of extra CPAN packages for core functionality.
| -| [Perl](https://www.perl.org/) | 5.38.2 | NVIDIA Tesla | iris | lang |
ShowLarry Wall's Practical Extraction and Report Language Includes a small selection of extra CPAN packages for core functionality.
| -| [Pillow](https://pillow.readthedocs.org/) | 11.3.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | vis |
ShowPillow is the 'friendly PIL fork' by Alex Clark and Contributors. PIL is the Python Imaging Library by Fredrik Lundh and Contributors.
| -| [PostgreSQL](https://www.postgresql.org/) | 17.5 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | data |
ShowPostgreSQL is a powerful, open source object-relational database system. It is fully ACID compliant, has full support for foreign keys, joins, views, triggers, and stored procedures (in multiple languages). It includes most SQL:2008 data types, including INTEGER, NUMERIC, BOOLEAN, CHAR, VARCHAR, DATE, INTERVAL, and TIMESTAMP. It also supports storage of binary large objects, including pictures, sounds, or video. It has native programming interfaces for C/C++, Java, .Net, Perl, Python, Ruby, Tcl, ODBC, among others, and exceptional documentation.
| -| [PuLP](https://github.com/coin-or/pulp) | 3.3.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
ShowPuLP is an LP modeler written in Python. PuLP can generate MPS or LP files and call GLPK, COIN-OR CLP/CBC, CPLEX, GUROBI, MOSEK, XPRESS, CHOCO, MIPCL, SCIP to solve linear problems.
| -| [PyYAML](https://github.com/yaml/pyyaml) | 6.0.2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowPyYAML is a YAML parser and emitter for the Python programming language.
| -| [Python-bundle-PyPI](https://python.org/) | 2025.04 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lang |
ShowBundle of Python packages from PyPI
| -| [Python](https://python.org/) | 3.13.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lang |
ShowPython is a programming language that lets you work more quickly and integrate your systems more effectively.
| -| [Qhull](http://www.qhull.org) | 2020.2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | math |
ShowQhull computes the convex hull, Delaunay triangulation, Voronoi diagram, halfspace intersection about a point, furthest-site Delaunay triangulation, and furthest-site Voronoi diagram. The source code runs in 2-d, 3-d, 4-d, and higher dimensions. Qhull implements the Quickhull algorithm for computing the convex hull.
| -| [Qt6](https://qt.io/) | 6.9.3 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | devel |
ShowQt is a comprehensive cross-platform C++ application framework.
| -| [QuantumESPRESSO](https://www.quantum-espresso.org) | 7.5 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | chem |
ShowQuantum ESPRESSO is an integrated suite of computer codes for electronic-structure calculations and materials modeling at the nanoscale. It is based on density-functional theory, plane waves, and pseudopotentials (both norm-conserving and ultrasoft).
| -| [R-bundle-Bioconductor](https://bioconductor.org) | 3.22 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | bio |
ShowBioconductor provides tools for the analysis and coprehension of high-throughput genomic data.
| -| [R-bundle-CRAN](https://www.r-project.org/) | 2025.10 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lang |
ShowBundle of R packages from CRAN
| -| [RE2](https://github.com/google/re2) | 2024-07-02 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowRE2 is a fast, safe, thread-friendly alternative to backtracking regular expression engines like those used in PCRE, Perl, and Python. It is a C++ library.
| -| [R](https://www.r-project.org/) | 4.5.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lang |
ShowR is a free software environment for statistical computing and graphics.
| -| [RapidJSON](https://rapidjson.org) | 1.1.0-20250205 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowA fast JSON parser/generator for C++ with both SAX/DOM style API
| -| [ReFrame](https://github.com/reframe-hpc/reframe) | 4.8.4 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | devel |
ShowReFrame is a framework for writing regression tests for HPC systems.
| -| [Rust](https://www.rust-lang.org) | 1.85.1
1.91.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lang |
ShowRust is a systems programming language that runs blazingly fast, prevents segfaults, and guarantees thread safety.
| -| [SCOTCH](https://www.labri.fr/perso/pelegrin/scotch/) | 7.0.8 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | math |
ShowSoftware package and libraries for sequential and parallel graph partitioning, static mapping, and sparse matrix block ordering, and sequential mesh and hypergraph partitioning.
| -| [SDL2](https://www.libsdl.org/) | 2.32.8 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowSDL: Simple DirectMedia Layer, a cross-platform multimedia library
| -| [SIONlib](https://www.fz-juelich.de/ias/jsc/EN/Expertise/Support/Software/SIONlib/_node.html) | 1.7.7 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowSIONlib is a scalable I/O library for parallel access to task-local files. The library not only supports writing and reading binary data to or from several thousands of processors into a single or a small number of physical files, but also provides global open and close functions to access SIONlib files in parallel. This package provides a stripped-down installation of SIONlib for use with performance tools (e.g., Score-P), with renamed symbols to avoid conflicts when an application using SIONlib itself is linked against a tool requiring a different SIONlib version.
| -| [SLEPc](https://slepc.upv.es) | 3.23.3 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | numlib |
ShowSLEPc (Scalable Library for Eigenvalue Problem Computations) is a software library for the solution of large scale sparse eigenvalue problems on parallel computers. It is an extension of PETSc and can be used for either standard or generalized eigenproblems, with real or complex arithmetic. It can also be used for computing a partial SVD of a large, sparse, rectangular matrix, and to solve quadratic eigenvalue problems.
| -| [SQLite](https://www.sqlite.org/) | 3.47.2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | devel |
ShowSQLite: SQL Database Engine in a C Library
| -| [SWIG](http://www.swig.org/) | 4.3.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | devel |
ShowSWIG is a software development tool that connects programs written in C and C++ with a variety of high-level programming languages.
| -| [ScaLAPACK](https://www.netlib.org/scalapack/) | 2.2.2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | numlib |
ShowThe ScaLAPACK (or Scalable LAPACK) library includes a subset of LAPACK routines redesigned for distributed memory MIMD parallel computers.
| -| [Scalasca](https://www.scalasca.org/) | 2.6.2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | perf |
ShowScalasca is a software tool that supports the performance optimization of parallel programs by measuring and analyzing their runtime behavior. The analysis identifies potential performance bottlenecks -- in particular those concerning communication and synchronization -- and offers guidance in exploring their causes.
| -| [SciPy-bundle](https://python.org/) | 2025.06 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lang |
ShowBundle of Python packages for scientific software
| -| [Score-P](https://www.score-p.org) | 9.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | perf |
ShowThe Score-P measurement infrastructure is a highly scalable and easy-to-use tool suite for profiling, event tracing, and online analysis of HPC applications.
| -| [Spack](https://spack.io/) | 1.1.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | devel |
ShowSpack is a package manager for supercomputers, Linux, and macOS. It makes installing scientific software easy. With Spack, you can build a package with multiple versions, configurations, platforms, and compilers, and all of these builds can coexist on the same machine.
| -| [SuiteSparse](https://faculty.cse.tamu.edu/davis/suitesparse.html) | 7.10.3 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | numlib |
ShowSuiteSparse is a collection of libraries to manipulate sparse matrices.
| -| [SuperLU_DIST](https://crd-legacy.lbl.gov/~xiaoye/SuperLU/) | 9.1.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | numlib |
ShowSuperLU is a general purpose library for the direct solution of large, sparse, nonsymmetric systems of linear equations on high performance machines.
| -| [Szip](https://docs.hdfgroup.org/archive/support/doc_resource/SZIP/index.html) | 2.1.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
ShowSzip compression software, providing lossless compression of scientific data
| -| [Tcl](https://www.tcl.tk/) | 8.6.16 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lang |
ShowTcl (Tool Command Language) is a very powerful but easy to learn dynamic programming language, suitable for a very wide range of uses, including web and desktop applications, networking, administration, testing and many more.
| -| [Tk](https://www.tcl.tk/) | 8.6.16 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | vis |
ShowTk is an open source, cross-platform widget toolchain that provides a library of basic elements for building a graphical user interface (GUI) in many different programming languages.
| -| [Tkinter](https://python.org/) | 3.13.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lang |
ShowTkinter module, built with the Python buildsystem
| -| [UCC](https://www.openucx.org/) | 1.3.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowUCC (Unified Collective Communication) is a collective communication operations API and library that is flexible, complete, and feature-rich for current and emerging programming models and runtimes.
| -| [UCX](https://www.openucx.org/) | 1.18.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowUnified Communication X An open-source production grade communication framework for data centric and high-performance applications
| -| [UDUNITS](https://www.unidata.ucar.edu/software/udunits/) | 2.2.28 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | phys |
ShowUDUNITS supports conversion of unit specifications between formatted and binary forms, arithmetic manipulation of units, and conversion of values between compatible scales of measurement.
| -| [UnZip](http://www.info-zip.org/UnZip.html) | 6.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
ShowUnZip is an extraction utility for archives compressed in .zip format (also called "zipfiles"). Although highly compatible both with PKWARE's PKZIP and PKUNZIP utilities for MS-DOS and with Info-ZIP's own Zip program, our primary objectives have been portability and non-MSDOS functionality.
| -| [Valgrind](https://valgrind.org) | 3.25.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | debugger |
ShowValgrind: Debugging and profiling tools
| -| [Wayland](https://wayland.freedesktop.org/) | 1.23.92 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | vis |
ShowWayland is a project to define a protocol for a compositor to talk to its clients as well as a library implementation of the protocol. The compositor can be a standalone display server running on Linux kernel modesetting and evdev input devices, an X application, or a wayland client itself. The clients can be traditional applications, X servers (rootless or fullscreen) or other display servers.
| -| [X11](https://www.x.org) | 20250521 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | vis |
ShowThe X Window System (X11) is a windowing system for bitmap displays
| -| [XZ](https://tukaani.org/xz/) | 5.6.3 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
Showxz: XZ utilities
| -| [Xerces-C++](https://xerces.apache.org/xerces-c/) | 3.3.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowXerces-C++ is a validating XML parser written in a portable subset of C++. Xerces-C++ makes it easy to give your application the ability to read and write XML data. A shared library is provided for parsing, generating, manipulating, and validating XML documents using the DOM, SAX, and SAX2 APIs.
| -| [Xvfb](https://www.x.org/releases/X11R7.6/doc/man/man1/Xvfb.1.xhtml) | 21.1.18 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | vis |
ShowXvfb is an X server that can run on machines with no display hardware and no physical input devices. It emulates a dumb framebuffer using virtual memory.
| -| [Yasm](https://www.tortall.net/projects/yasm/) | 1.3.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lang |
ShowYasm: Complete rewrite of the NASM assembler with BSD license
| -| [Z3](https://github.com/Z3Prover/z3) | 4.13.4 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
ShowZ3 is a theorem prover from Microsoft Research with support for bitvectors, booleans, arrays, floating point numbers, strings, and other data types. This module includes z3-solver, the Python interface of Z3.
| -| [ZeroMQ](https://www.zeromq.org/) | 4.3.5 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | devel |
ShowZeroMQ looks like an embeddable networking library but acts like a concurrency framework. It gives you sockets that carry atomic messages across various transports like in-process, inter-process, TCP, and multicast. You can connect sockets N-to-N with patterns like fanout, pub-sub, task distribution, and request-reply. It's fast enough to be the fabric for clustered products. Its asynchronous I/O model gives you scalable multicore applications, built as asynchronous message-processing tasks. It has a score of language APIs and runs on most operating systems.
| -| [arpack-ng](https://github.com/opencollab/arpack-ng) | 3.9.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | numlib |
ShowARPACK is a collection of Fortran77 subroutines designed to solve large scale eigenvalue problems.
| -| [arrow-R](https://cran.r-project.org/web/packages/arrow) | 22.0.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
ShowR interface to the Apache Arrow C++ library
| -| [assimp](https://github.com/assimp/assimp) | 6.0.2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | vis |
ShowOpen Asset Import Library (assimp) is a library to import and export various 3d-model-formats including scene-post-processing to generate missing render data.
| -| [binutils](https://directory.fsf.org/project/binutils/) | 2.40
2.42 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
Showbinutils: GNU binary utilities
| -| [binutils](https://directory.fsf.org/project/binutils/) | 2.42 | NVIDIA Tesla | iris | tools |
Showbinutils: GNU binary utilities
| -| [build](https://github.com/pypa/build) | 1.3.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | devel |
ShowA simple, correct Python build frontend.
| -| [bzip2](https://sourceware.org/bzip2) | 1.0.8 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
Showbzip2 is a freely available, patent free, high-quality data compressor. It typically compresses files to within 10% to 15% of the best available techniques (the PPM family of statistical compressors), whilst being around twice as fast at compression and six times faster at decompression.
| -| [cURL](https://curl.haxx.se) | 8.11.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
Showlibcurl is a free and easy-to-use client-side URL transfer library, supporting DICT, FILE, FTP, FTPS, Gopher, HTTP, HTTPS, IMAP, IMAPS, LDAP, LDAPS, POP3, POP3S, RTMP, RTSP, SCP, SFTP, SMTP, SMTPS, Telnet and TFTP. libcurl supports SSL certificates, HTTP POST, HTTP PUT, FTP uploading, HTTP form based upload, proxies, cookies, user+password authentication (Basic, Digest, NTLM, Negotiate, Kerberos), file transfer resume, http proxy tunneling and more.
| -| [cairo](https://cairographics.org) | 1.18.4 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | vis |
ShowCairo is a 2D graphics library with support for multiple output devices. Currently supported output targets include the X Window System (via both Xlib and XCB), Quartz, Win32, image buffers, PostScript, PDF, and SVG file output. Experimental backends include OpenGL, BeOS, OS/2, and DirectFB
| -| [cffi](https://cffi.readthedocs.io/en/latest/) | 1.17.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
ShowC Foreign Function Interface for Python. Interact with almost any C code from Python, based on C-like declarations that you can often copy-paste from header files or documentation.
| -| [cppy](https://github.com/nucleic/cppy) | 1.3.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
ShowA small C++ header library which makes it easier to write Python extension modules. The primary feature is a PyObject smart pointer which automatically handles reference counting and provides convenience methods for performing common object operations.
| -| [cryptography](https://github.com/pyca/cryptography) | 44.0.2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
Showcryptography is a package designed to expose cryptographic primitives and recipes to Python developers.
| -| [double-conversion](https://github.com/google/double-conversion) | 3.3.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowEfficient binary-decimal and decimal-binary conversion routines for IEEE doubles.
| -| [expat](https://libexpat.github.io) | 2.6.4 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
ShowExpat is an XML parser library written in C. It is a stream-oriented parser in which an application registers handlers for things the parser might find in the XML document (like start tags).
| -| [ffnvcodec](https://git.videolan.org/?p=ffmpeg/nv-codec-headers.git) | 13.0.19.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowFFmpeg nvidia headers. Adds support for nvenc and nvdec. Requires Nvidia GPU and drivers to be present (picked up dynamically).
| -| [flex](http://flex.sourceforge.net/) | 2.6.4 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lang |
ShowFlex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner, sometimes called a tokenizer, is a program which recognizes lexical patterns in text.
| -| [flex](https://github.com/westes/flex) | 2.6.4 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | lang |
ShowFlex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner, sometimes called a tokenizer, is a program which recognizes lexical patterns in text.
| -| [flit](https://github.com/pypa/flit) | 3.10.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
ShowA simple packaging tool for simple packages.
| -| [fontconfig](https://www.freedesktop.org/wiki/Software/fontconfig/) | 2.16.2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | vis |
ShowFontconfig is a library designed to provide system-wide font configuration, customization and application access.
| -| [fonttools](https://python-markdown.github.io/) | 4.58.4 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | devel |
ShowfontTools is a library for manipulating fonts, written in Python. The project includes the TTX tool, that can convert TrueType and OpenType fonts to and from an XML text format, which is also called TTX. It supports TrueType, OpenType, AFM and to an extent Type 1 and some Mac-specific formats.
| -| [foss](https://docs.easybuild.io/common-toolchains/#common_toolchains_foss) | 2025a | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | toolchain |
ShowGNU Compiler Collection (GCC) based compiler toolchain, including OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK.
| -| [freetype](https://www.freetype.org) | 2.13.3 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | vis |
ShowFreeType 2 is a software font engine that is designed to be small, efficient, highly customizable, and portable while capable of producing high-quality output (glyph images). It can be used in graphics libraries, display servers, font conversion tools, text image generation tools, and many other products as well.
| -| [gettext](https://www.gnu.org/software/gettext/) | 0.22.5
0.24 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
ShowGNU 'gettext' is an important step for the GNU Translation Project, as it is an asset on which we may build many other steps. This package offers to programmers, translators, and even users, a well integrated set of tools and documentation
| -| [gfbf]((none)) | 2025a | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | toolchain |
ShowGNU Compiler Collection (GCC) based compiler toolchain, including FlexiBLAS (BLAS and LAPACK support) and (serial) FFTW.
| -| [giflib](http://giflib.sourceforge.net/) | 5.2.2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
Showgiflib is a library for reading and writing gif images. It is API and ABI compatible with libungif which was in wide use while the LZW compression algorithm was patented.
| -| [git](https://git-scm.com) | 2.49.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
ShowGit is a free and open source distributed version control system designed to handle everything from small to very large projects with speed and efficiency.
| -| [glslang-SPIRV](https://www.khronos.org/opengles/sdk/tools/Reference-Compiler/) | 15.3.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | compiler |
ShowGlslang is the official reference compiler front end for the OpenGL ES and OpenGL shading languages. It implements a strict interpretation of the specifications for these languages. It is open and free for anyone to use, either from a command line or programmatically. The OpenGL and OpenGL ES working groups are committed to maintaining consistency between the reference compiler and the corresponding shading language specifications.
| -| [gmsh](https://gmsh.info/) | 4.15.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | math |
ShowGmsh is a 3D finite element grid generator with a build-in CAD engine and post-processor.
| -| [gnuplot](http://gnuplot.sourceforge.net) | 6.0.3 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | vis |
ShowPortable interactive, function plotting utility
| -| [gompi]((none)) | 2025a | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | toolchain |
ShowGNU Compiler Collection (GCC) based compiler toolchain, including OpenMPI for MPI support.
| -| [googlebenchmark](https://github.com/google/benchmark) | 1.9.4 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
ShowGoogle's framework for writing C++ tests on a variety of platforms
| -| [googletest](https://github.com/google/googletest) | 1.17.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
ShowGoogle's framework for writing C++ tests on a variety of platforms
| -| [gperf](https://www.gnu.org/software/gperf/) | 3.3 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | devel |
ShowGNU gperf is a perfect hash function generator. For a given list of strings, it produces a hash function and hash table, in form of C or C++ code, for looking up a value depending on the input string. The hash function is perfect, which means that the hash table has no collisions, and the hash table lookup needs a single string comparison only.
| -| [graphite2](https://scripts.sil.org/cms/scripts/page.php?site_id=projects&item_id=graphite_home) | 1.3.14 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowGraphite is a "smart font" system developed specifically to handle the complexities of lesser-known languages of the world.
| -| [groff](https://www.gnu.org/software/groff) | 1.23.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
ShowGroff (GNU troff) is a typesetting system that reads plain text mixed with formatting commands and produces formatted output.
| -| [gzip](https://www.gnu.org/software/gzip/) | 1.13 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
Showgzip (GNU zip) is a popular data compression program as a replacement for compress
| -| [h5py](https://www.h5py.org/) | 3.14.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | data |
ShowHDF5 for Python (h5py) is a general-purpose Python interface to the Hierarchical Data Format library, version 5. HDF5 is a versatile, mature scientific software library designed for the fast, flexible storage of enormous amounts of data.
| -| [hatchling](https://hatch.pypa.io) | 1.27.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
ShowExtensible, standards compliant build backend used by Hatch, a modern, extensible Python project manager.
| -| [help2man](https://www.gnu.org/software/help2man/) | 1.49.3 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | tools |
Showhelp2man produces simple manual pages from the '--help' and '--version' output of other commands.
| -| [hwloc](https://www.open-mpi.org/projects/hwloc/) | 2.11.2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | system |
ShowThe Portable Hardware Locality (hwloc) software package provides a portable abstraction (across OS, versions, architectures, ...) of the hierarchical topology of modern architectures, including NUMA memory nodes, sockets, shared caches, cores and simultaneous multithreading. It also gathers various system attributes such as cache and memory information as well as the locality of I/O devices such as network interfaces, InfiniBand HCAs or GPUs. It primarily aims at helping applications with gathering information about modern computing hardware so as to exploit it accordingly and efficiently.
| -| [hypothesis](https://github.com/HypothesisWorks/hypothesis) | 6.133.2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
ShowHypothesis is an advanced testing library for Python. It lets you write tests which are parametrized by a source of examples, and then generates simple and comprehensible examples that make your tests fail. This lets you find more bugs in your code with less work.
| -| [iimpi](https://software.intel.com/parallel-studio-xe) | 2025a | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | toolchain |
ShowIntel C/C++ and Fortran compilers, alongside Intel MPI.
| -| [imkl-FFTW](https://software.intel.com/content/www/us/en/develop/tools/oneapi/components/onemkl.html) | 2025.1.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | numlib |
ShowFFTW interfaces using Intel oneAPI Math Kernel Library
| -| [imkl](https://software.intel.com/content/www/us/en/develop/tools/oneapi/components/onemkl.html) | 2025.1.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | numlib |
ShowIntel oneAPI Math Kernel Library
| -| [impi](https://software.intel.com/content/www/us/en/develop/tools/mpi-library.html) | 2021.15.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | mpi |
ShowIntel MPI Library, compatible with MPICH ABI
| -| [intel-compilers](https://software.intel.com/content/www/us/en/develop/tools/oneapi/hpc-toolkit.html) | 2025.1.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | compiler |
ShowIntel C, C++ & Fortran compilers
| -| [intel](https://docs.easybuild.io/common-toolchains/#common_toolchains_overview_intel) | 2025a | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | toolchain |
ShowCompiler toolchain including Intel compilers, Intel MPI and Intel Math Kernel Library (MKL).
| -| [intltool](https://freedesktop.org/wiki/Software/intltool/) | 0.51.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | devel |
Showintltool is a set of tools to centralize translation of many different file formats using GNU gettext-compatible PO files.
| -| [jbigkit](https://www.cl.cam.ac.uk/~mgk25/jbigkit/) | 2.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | vis |
ShowJBIG-KIT is a software implementation of the JBIG1 data compression standard (ITU-T T.82), which was designed for bi-level image data, such as scanned documents.
| -| [jedi](https://github.com/davidhalter/jedi) | 0.19.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
ShowJedi - an awesome autocompletion, static analysis and refactoring library for Python.
| -| [json-c](https://github.com/json-c/json-c) | 0.18 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowJSON-C implements a reference counting object model that allows you to easily construct JSON objects in C, output them as JSON formatted strings and parse JSON formatted strings back into the C representation of JSON objects.
| -| [jxrlib](https://github.com/4creators/jxrlib) | 2019.10.9 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowOpen source implementation of jpegxr
| -| [libGLU](https://gitlab.freedesktop.org/mesa/glu) | 9.0.3 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | vis |
ShowThe OpenGL Utility Library (GLU) is a computer graphics library for OpenGL.
| -| [libarchive](https://www.libarchive.org/) | 3.7.7 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
ShowMulti-format archive and compression library
| -| [libcerf](https://jugit.fz-juelich.de/mlz/libcerf) | 3.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | math |
Showlibcerf is a self-contained numeric library that provides an efficient and accurate implementation of complex error functions, along with Dawson, Faddeeva, and Voigt functions.
| -| [libde265](https://github.com/strukturag/libde265) | 1.0.16 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
Showlibde265 is an open source implementation of the h.265 video codec
| -| [libdeflate](https://github.com/ebiggers/libdeflate) | 1.24 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | system |
ShowHeavily optimized library for DEFLATE/zlib/gzip compression and decompression.
| -| [libdrm](https://dri.freedesktop.org) | 2.4.125 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowDirect Rendering Manager runtime library.
| -| [libevent](https://libevent.org/) | 2.1.12 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowThe libevent API provides a mechanism to execute a callback function when a specific event occurs on a file descriptor or after a timeout has been reached. Furthermore, libevent also support callbacks due to signals or regular timeouts.
| -| [libfabric](https://ofiwg.github.io/libfabric/) | 2.0.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowLibfabric is a core component of OFI. It is the library that defines and exports the user-space API of OFI, and is typically the only software that applications deal with directly. It works in conjunction with provider libraries, which are often integrated directly into libfabric.
| -| [libffi](https://sourceware.org/libffi/) | 3.4.5 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowThe libffi library provides a portable, high level programming interface to various calling conventions. This allows a programmer to call any function specified by a call interface description at run-time.
| -| [libgd](https://libgd.github.io) | 2.3.3 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowGD is an open source code library for the dynamic creation of images by programmers.
| -| [libgeotiff](https://trac.osgeo.org/geotiff/wiki/WikiStart) | 1.7.4 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowLibrary for reading and writing coordinate system information from/to GeoTIFF files
| -| [libgit2](https://libgit2.org/) | 1.9.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | devel |
Showlibgit2 is a portable, pure C implementation of the Git core methods provided as a re-entrant linkable library with a solid API, allowing you to write native speed custom Git applications in any language which supports C bindings.
| -| [libglvnd](https://gitlab.freedesktop.org/glvnd/libglvnd) | 1.7.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
Showlibglvnd is a vendor-neutral dispatch layer for arbitrating OpenGL API calls between multiple vendors.
| -| [libheif](https://github.com/strukturag/libheif) | 1.19.8 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
Showlibheif is an HEIF and AVIF file format decoder and encoder
| -| [libiconv](https://www.gnu.org/software/libiconv) | 1.18 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowLibiconv converts from one character encoding to another through Unicode conversion
| -| [libidn2](http://www.gnu.org/software/%(name)s) | 2.3.7 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowLibidn2 implements the revised algorithm for internationalized domain names called IDNA2008/TR46.
| -| [libjpeg-turbo](https://libjpeg-turbo.org/) | 3.1.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
Showlibjpeg-turbo is a fork of the original IJG libjpeg which uses SIMD to accelerate baseline JPEG compression and decompression. libjpeg is a library that implements JPEG image encoding, decoding and transcoding.
| -| [libogg](https://xiph.org/ogg/) | 1.3.6 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowOgg is a multimedia container format, and the native file and stream format for the Xiph.org multimedia codecs.
| -| [libopus](https://www.opus-codec.org/) | 1.5.2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowOpus is a totally open, royalty-free, highly versatile audio codec. Opus is unmatched for interactive speech and music transmission over the Internet, but is also intended for storage and streaming applications. It is standardized by the Internet Engineering Task Force (IETF) as RFC 6716 which incorporated technology from Skype’s SILK codec and Xiph.Org’s CELT codec.
| -| [libpciaccess](https://cgit.freedesktop.org/xorg/lib/libpciaccess/) | 0.18.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | system |
ShowGeneric PCI access library.
| -| [libpng](https://www.libpng.org/pub/png/libpng.html) | 1.6.48 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
Showlibpng is the official PNG reference library
| -| [libpsl](https://rockdaboot.github.io/libpsl) | 0.21.5 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowC library for the Public Suffix List
| -| [libreadline](https://tiswww.case.edu/php/chet/readline/rltop.html) | 8.2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowThe GNU Readline library provides a set of functions for use by applications that allow users to edit command lines as they are typed in. Both Emacs and vi editing modes are available. The Readline library includes additional functions to maintain a list of previously-entered command lines, to recall and perhaps reedit those lines, and perform csh-like history expansion on previous commands.
| -| [libsndfile](http://www.mega-nerd.com/libsndfile) | 1.2.2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowLibsndfile is a C library for reading and writing files containing sampled sound (such as MS Windows WAV and the Apple/SGI AIFF format) through one standard library interface.
| -| [libsodium](https://doc.libsodium.org/) | 1.0.20 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowSodium is a modern, easy-to-use software library for encryption, decryption, signatures, password hashing and more.
| -| [libtirpc](https://sourceforge.net/projects/libtirpc/) | 1.3.6 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowLibtirpc is a port of Suns Transport-Independent RPC library to Linux.
| -| [libtool](https://www.gnu.org/software/libtool) | 2.4.7 | NVIDIA Tesla | iris | lib |
ShowGNU libtool is a generic library support script. Libtool hides the complexity of using shared libraries behind a consistent, portable interface.
| -| [libtool](https://www.gnu.org/software/libtool) | 2.5.4 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowGNU libtool is a generic library support script. Libtool hides the complexity of using shared libraries behind a consistent, portable interface.
| -| [libunistring](https://www.gnu.org/software/libunistring/) | 1.3 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowThis library provides functions for manipulating Unicode strings and for manipulating C strings according to the Unicode standard.
| -| [libunwind](https://www.nongnu.org/libunwind/) | 1.8.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowThe primary goal of libunwind is to define a portable and efficient C programming interface (API) to determine the call-chain of a program. The API additionally provides the means to manipulate the preserved (callee-saved) state of each call-frame and to resume execution at any point in the call-chain (non-local goto). The API supports both local (same-process) and remote (across-process) operation. As such, the API is useful in a number of applications
| -| [libvorbis](https://xiph.org/vorbis/) | 1.3.7 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowOgg Vorbis is a fully open, non-proprietary, patent-and-royalty-free, general-purpose compressed audio format
| -| [libwebp](https://developers.google.com/speed/webp/) | 1.5.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowWebP is a modern image format that provides superior lossless and lossy compression for images on the web. Using WebP, webmasters and web developers can create smaller, richer images that make the web faster.
| -| [libxc](https://libxc.gitlab.io) | 7.0.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | chem |
ShowLibxc is a library of exchange-correlation functionals for density-functional theory. The aim is to provide a portable, well tested and reliable set of exchange and correlation functionals.
| -| [libxml2](https://gitlab.gnome.org/GNOME/libxml2/-/wikis) | 2.13.4 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowLibxml2 is the XML C parser and toolchain developed for the Gnome project (but usable outside of the Gnome platform).
| -| [libxslt](https://gitlab.gnome.org/GNOME/libxslt/-/wikis) | 1.1.42 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowLibxslt is the XSLT C library developed for the GNOME project (but usable outside of the Gnome platform).
| -| [libyaml](https://pyyaml.org/wiki/LibYAML) | 0.2.5 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowLibYAML is a YAML parser and emitter written in C.
| -| [lit](https://llvm.org/docs/CommandGuide/lit.html) | 18.1.8 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
Showlit is a portable tool for executing LLVM and Clang style test suites, summarizing their results, and providing indication of failures.
| -| [lxml](https://lxml.de/) | 5.3.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowThe lxml XML toolkit is a Pythonic binding for the C libraries libxml2 and libxslt.
| -| [lz4](https://lz4.github.io/lz4/) | 1.10.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowLZ4 is lossless compression algorithm, providing compression speed at 400 MB/s per core. It features an extremely fast decoder, with speed in multiple GB/s per core.
| -| [make](https://www.gnu.org/software/make/make.html) | 4.4.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | devel |
ShowGNU version of make utility
| -| [makeinfo](https://www.gnu.org/software/texinfo/) | 7.2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | devel |
Showmakeinfo is part of the Texinfo project, the official documentation format of the GNU project.
| -| [matplotlib](https://matplotlib.org) | 3.10.3 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | vis |
Showmatplotlib is a python 2D plotting library which produces publication quality figures in a variety of hardcopy formats and interactive environments across platforms. matplotlib can be used in python scripts, the python and ipython shell, web application servers, and six graphical user interface toolkits.
| -| [maturin](https://github.com/pyo3/maturin) | 1.8.3 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
ShowThis project is meant as a zero configuration replacement for setuptools-rust and milksnake. It supports building wheels for python 3.5+ on windows, linux, mac and freebsd, can upload them to pypi and has basic pypy and graalpy support.
| -| [meson-python](https://github.com/mesonbuild/meson-python) | 0.18.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
ShowPython build backend (PEP 517) for Meson projects
| -| [mpi4py](https://github.com/mpi4py/mpi4py) | 4.1.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowMPI for Python (mpi4py) provides bindings of the Message Passing Interface (MPI) standard for the Python programming language, allowing any Python program to exploit multiple processors.
| -| [ncurses](https://www.gnu.org/software/ncurses/) | 6.5 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | devel |
ShowThe Ncurses (new curses) library is a free software emulation of curses in System V Release 4.0, and more. It uses Terminfo format, supports pads and color and multiple highlights and forms characters and function-key mapping, and has all the other SYSV-curses enhancements over BSD Curses.
| -| [netCDF-Fortran](https://www.unidata.ucar.edu/software/netcdf/) | 4.6.2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | data |
ShowNetCDF (network Common Data Form) is a set of software libraries and machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data.
| -| [netCDF](https://www.unidata.ucar.edu/software/netcdf/) | 4.9.3 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | data |
ShowNetCDF (network Common Data Form) is a set of software libraries and machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data.
| -| [netcdf4-python](https://unidata.github.io/netcdf4-python/) | 1.7.2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | data |
ShowPython/numpy interface to netCDF.
| -| [nettle](https://www.lysator.liu.se/~nisse/nettle/) | 3.10.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowNettle is a cryptographic library that is designed to fit easily in more or less any context: In crypto toolkits for object-oriented languages (C++, Python, Pike, ...), in applications like LSH or GNUPG, or even in kernel space.
| -| [networkx](https://pypi.python.org/pypi/networkx) | 3.5 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
ShowNetworkX is a Python package for the creation, manipulation, and study of the structure, dynamics, and functions of complex networks.
| -| [nlohmann_json](https://github.com/nlohmann/json) | 3.12.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowJSON for Modern C++
| -| [nodejs](https://nodejs.org) | 22.16.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lang |
ShowNode.js is a platform built on Chrome's JavaScript runtime for easily building fast, scalable network applications. Node.js uses an event-driven, non-blocking I/O model that makes it lightweight and efficient, perfect for data-intensive real-time applications that run across distributed devices.
| -| [numactl](https://github.com/numactl/numactl) | 2.0.18 | NVIDIA Tesla | iris | tools |
ShowThe numactl program allows you to run your application program on specific cpu's and memory nodes. It does this by supplying a NUMA memory policy to the operating system before running your program. The libnuma library provides convenient ways for you to add NUMA memory policies into your own program.
| -| [numactl](https://github.com/numactl/numactl) | 2.0.19 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
ShowThe numactl program allows you to run your application program on specific cpu's and memory nodes. It does this by supplying a NUMA memory policy to the operating system before running your program. The libnuma library provides convenient ways for you to add NUMA memory policies into your own program.
| -| [nvidia-compilers](https://developer.nvidia.com/hpc-sdk/) | 25.1 | NVIDIA Tesla | iris | compiler |
ShowC, C++ and Fortran compilers included with the NVIDIA HPC SDK
| -| [occt](https://www.opencascade.com/) | 7.9.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | cae |
ShowOpen CASCADE Technology (OCCT) is an object-oriented C++ class library designed for rapid production of sophisticated domain-specific CAD/CAM/CAE applications.
| -| [patchelf](https://github.com/NixOS/patchelf) | 0.18.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
ShowPatchELF is a small utility to modify the dynamic linker and RPATH of ELF executables.
| -| [pixman](http://www.pixman.org/) | 0.46.2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | vis |
ShowPixman is a low-level software library for pixel manipulation, providing features such as image compositing and trapezoid rasterization. Important users of pixman are the cairo graphics library and the X server.
| -| [pkgconf](https://github.com/pkgconf/pkgconf) | 1.8.0
2.3.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | devel |
Showpkgconf is a program which helps to configure compiler and linker flags for development libraries. It is similar to pkg-config from freedesktop.org.
| -| [poetry](https://python-poetry.org) | 2.1.2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
ShowPython packaging and dependency management made easy. Poetry helps you declare, manage and install dependencies of Python projects, ensuring you have the right stack everywhere.
| -| [psutil](https://github.com/giampaolo/psutil) | 7.0.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowA cross-platform process and system utilities module for Python
| -| [pybind11](https://pybind11.readthedocs.io) | 2.13.6 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
Showpybind11 is a lightweight header-only library that exposes C++ types in Python and vice versa, mainly to create Python bindings of existing C++ code.
| -| [re2c](https://re2c.org) | 4.2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
Showre2c is a free and open-source lexer generator for C and C++. Its main goal is generating fast lexers: at least as fast as their reasonably optimized hand-coded counterparts. Instead of using traditional table-driven approach, re2c encodes the generated finite state automata directly in the form of conditional jumps and comparisons.
| -| [scikit-build-core](https://scikit-build.readthedocs.io/en/latest/) | 0.11.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowScikit-build-core is a complete ground-up rewrite of scikit-build on top of modern packaging APIs. It provides a bridge between CMake and the Python build system, allowing you to make Python modules with CMake.
| -| [scikit-build](https://scikit-build.readthedocs.io/en/latest) | 0.18.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowScikit-Build, or skbuild, is an improved build system generator for CPython C/C++/Fortran/Cython extensions.
| -| [setuptools-rust](https://github.com/PyO3/setuptools-rust) | 1.11.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
Showsetuptools-rust is a plugin for setuptools to build Rust Python extensions implemented with PyO3 or rust-cpython.
| -| [snakemake](https://snakemake.readthedocs.io) | 9.14.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
ShowThe Snakemake workflow management system is a tool to create reproducible and scalable data analyses.
| -| [snappy](https://github.com/google/snappy) | 1.2.2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowSnappy is a compression/decompression library. It does not aim for maximum compression, or compatibility with any other compression library; instead, it aims for very high speeds and reasonable compression.
| -| [spin](https://github.com/scientific-python/spin) | 0.14 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | devel |
ShowDeveloper tool for scientific Python libraries
| -| [tbb](https://github.com/oneapi-src/oneTBB) | 2022.2.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowIntel(R) Threading Building Blocks (Intel(R) TBB) lets you easily write parallel C++ programs that take full advantage of multicore performance, that are portable, composable and have future-proof scalability.
| -| [utf8proc](https://github.com/JuliaStrings/utf8proc) | 2.10.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
Showutf8proc is a small, clean C library that provides Unicode normalization, case-folding, and other operations for data in the UTF-8 encoding.
| -| [util-linux](https://www.kernel.org/pub/linux/utils/util-linux) | 2.41 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
ShowSet of Linux utilities
| -| [virtualenv](https://github.com/pypa/virtualenv) | 20.29.2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
ShowA tool for creating isolated virtual python environments.
| -| [x264](https://www.videolan.org/developers/x264.html) | 20250619 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | vis |
Showx264 is a free software library and application for encoding video streams into the H.264/MPEG-4 AVC compression format, and is released under the terms of the GNU GPL.
| -| [x265](https://x265.org/) | 4.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | vis |
Showx265 is a free software library and application for encoding video streams into the H.265 AVC compression format, and is released under the terms of the GNU GPL.
| -| [xorg-macros](https://gitlab.freedesktop.org/xorg/util/macros) | 1.20.2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | devel |
ShowX.org macros utilities.
| -| [xprop](https://www.x.org/wiki/) | 1.2.8 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | vis |
ShowThe xprop utility is for displaying window and font properties in an X server. One window or font is selected using the command line arguments or possibly in the case of a window, by clicking on the desired window. A list of properties is then given, possibly with formatting information.
| -| [xxd](https://www.vim.org) | 9.1.1457 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
Showxxd is part of the VIM package and this will only install xxd, not vim! xxd converts to/from hexdumps of binary files.
| -| [zlib](https://www.zlib.net/) | 1.2.13
1.3.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
Showzlib is designed to be a free, general-purpose, legally unencumbered -- that is, not covered by any patents -- lossless data-compression library for use on virtually any computer hardware and operating system.
| -| [zlib](https://www.zlib.net/) | 1.3.1 | NVIDIA Tesla | iris | lib |
Showzlib is designed to be a free, general-purpose, legally unencumbered -- that is, not covered by any patents -- lossless data-compression library for use on virtually any computer hardware and operating system.
| -| [zstd](https://facebook.github.io/zstd) | 1.5.6 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowZstandard is a real-time compression algorithm, providing high compression ratios. It offers a very wide range of compression/speed trade-off, while being backed by a very fast decoder. It also offers a special mode for small data, called dictionary compression, and can create dictionaries from any sample set.
| \ No newline at end of file +## Proposed layout + +| Software / Version | Available architecture builds | Category | Description | +|:-----------------------------------------------|:-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:-----------|:-----------------------------------------------------------------------------------------------------------------------------| +| [AOCL-BLAS](https://github.com/amd/blis) / 5.0 |
Show
irisbroadwell(GCC-12, system), skylake(GCC-12)
epycepyc(GCC-12)
| numlib |
ShowAOCL-BLAS is AMD's optimized version of BLAS targeted for AMD EPYC and Ryzen CPUs.
| + +## Discarded trials + +| Software {: style="background-color: #ffcc00; color: #000;"} | Version {: style="background-color: #ffcc00; color: #000;"} | Architectures | Category | Description | +|:------------------------------------------------------------------------------------------------------|:------------------------------------------------------------|:-------------------------------------------------------|:-----------|:-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------| +| [AOCL-BLAS](https://github.com/amd/blis) | 5.0 |
Show
irisaion
broadwellskylake
epyc
| numlib |
ShowAOCL-BLAS is AMD's optimized version of BLAS for AMD EPYC and Ryzen CPUs.
| +| [AOCL-BLAS](https://github.com/amd/blis) | 5.0 |
Show
irisbroadwell(GCC-12, system), skylake(GCC-12)
epycepyc(GCC-12)
| numlib |
ShowAOCL-BLAS is AMD's optimized version of BLAS targeted for AMD EPYC and Ryzen CPUs.
| From 38fbf7d586137415b6ee4cd3044675054cb8d430 Mon Sep 17 00:00:00 2001 From: Georgios Kafanas Date: Thu, 20 Aug 2026 21:06:03 +0200 Subject: [PATCH 16/20] [REFACTOR] Save module metadata per software release --- scripts/eb_metadata.py | 182 ---------------- scripts/extract_module_metadata.py | 327 ++++++++++++++++++++++++++++ scripts/software_installations.yaml | 25 +++ 3 files changed, 352 insertions(+), 182 deletions(-) delete mode 100644 scripts/eb_metadata.py create mode 100644 scripts/extract_module_metadata.py create mode 100644 scripts/software_installations.yaml diff --git a/scripts/eb_metadata.py b/scripts/eb_metadata.py deleted file mode 100644 index fa9b51a9d..000000000 --- a/scripts/eb_metadata.py +++ /dev/null @@ -1,182 +0,0 @@ -import json -import os -import pandas as pd -from pathlib import Path -from easybuild.framework.easyconfig.parser import EasyConfigParser - -#----------------------------------------- -# Run only with Easybuild versions 5.3.x or above -# Define available software releases -# Add only software in "release" modules! Only one build number in release. - -cluster_info = { - 'releases' : [ - "2025a", - "2024a", - "2023b", - ], - - 'build' : "rhel810-20260107", - - 'architectures' : { - 'epyc' : "AMD EPYC", - 'broadwell' : "Intel Broadwell", - 'skylake' : "Intel Skylake", - 'saphirerapids' : "Intel Sapphire Rapids", - 'gpu' : "NVIDIA Tesla", - }, - - 'base_path' : "/opt/apps/easybuild/systems/" -} - -def get_software_stack(software_path, hwd_data): - stack = [] - - for eb in software_path.rglob("*.eb"): - if "reprod" in eb.parts: - continue - - print(eb) - extract_easyconfigs_info(eb, software_path, stack, hwd_data) - - return stack - -def toolchain_to_string(toolchain): - if toolchain["name"] == "system": - return "" - - return "{name}-{version}".format(name = toolchain["name"], version = toolchain["version"]) - -def extract_easyconfigs_info(eb, software_path, stack, hwd_data): - if eb.is_relative_to(software_path / "EasyBuild"): - return stack - - try: - parser = EasyConfigParser(filename = str(eb)) - ec = parser.get_config_dict(validate = False) - - package = { - "Name": ec["name"], - "Version": ec["version"], - "Homepage": ec["homepage"], - "Description": ec["description"], - "Toolchain": toolchain_to_string(ec["toolchain"]) - "Architectures": cluster_info["architectures"][hwd_data[1]], - "Clusters" : hwd_data[0], - "Category": ec.get("moduleclass"), - } - - stack.append(package) - - except Exception as excpt: - print(f"Failed: {eb}: {excpt}") - - return stack - -def homepage_link(text, url): - if pd.notna(url) and url: - return f"[{text}]({url})" - return text - -def get_software_table(stack): - df = pd.DataFrame(stack) - - # Clean software descriptions - df["Description"] = (df["Description"] - .fillna("") - .str.replace(r"\s+", " ", regex=True) - .str.strip()) - - # Combine versions for the same software - df = df.groupby( - [ - "Name", - "Homepage", - "Architectures", - "Clusters", - "Category", - "Description", - "Toolchain", - ], - as_index=False - ).agg({ - "Version": ( lambda x: "
".join(sorted(list(set(x)))) ), - }) - - # Create Markdown hyperlinks - df["Software"] = df.apply( - lambda row: homepage_link(row["Name"], row["Homepage"]), - axis=1, - ) - - return df - -def merge_dataframes(stack, collapse_descr = True): - # Take all df corresponding to the same release - df = pd.concat(stack, ignore_index=True) - - # Group software available in different clusters and arch - merged_result = ( - df.groupby( - ["Software", "Version", "Category", "Description"], - as_index=False, - ) - .agg({ - "Architectures": lambda s:", ". join(sorted(set(s))), - "Clusters": lambda s:", ". join(sorted(set(s))), - }) - ) - - # Reorder data for Markdown table - merged_result = merged_result[ - [ - "Software", - "Version", - "Architectures", - "Clusters", - "Category", - "Description", - ] - ] - - if collapse_descr == True: - merged_result["Description"] = merged_result["Description"].apply( - lambda d: ( - "
" - "Show" - f"{d}" - "
" - ) - ) - - return merged_result - -def get_sotfware_tables(save_data = True): - clusters = os.listdir(cluster_info['base_path']) - clusters.remove('binary') - - stack = dict() - for rel in cluster_info['releases']: - stack[rel] = [] - for cl in clusters: - hwd_data = [cl, None] - archs = os.listdir(str(Path(cluster_info['base_path']) / cl / cluster_info['build'] / rel)) - for arch in archs: - hwd_data[1] = arch - full_path = f"{cluster_info['base_path']}{cl}/{cluster_info['build']}/{rel}/{arch}/software/" - tmp_stack = get_software_stack(Path(full_path), hwd_data) - stack[rel].append(get_software_table(tmp_stack)) - result = merge_dataframes(stack[rel]) - - if save_data == True: - with open(f"{rel}.md", "w") as f: - f.write(result.to_markdown(index = False)) - -## Keep JSON too -#df.to_json("stack.json", orient="records", indent=2) - -def main(): - get_sotfware_tables() - -if __name__ == "__main__": - main() diff --git a/scripts/extract_module_metadata.py b/scripts/extract_module_metadata.py new file mode 100644 index 000000000..87d295948 --- /dev/null +++ b/scripts/extract_module_metadata.py @@ -0,0 +1,327 @@ +import yaml +import argparse +import typing +import pandas as pd +import itertools +import functools +import pathlib +from easybuild.framework.easyconfig.parser import EasyConfigParser + +#----------------------------------------- +# Run only with Easybuild versions 5.3.x or above +# Add only software in "release" modules! Only one build number in release. + +def toolchain_to_maybe_string(toolchain): + if toolchain['name'] == "system": + return "system" + + return "{name}-{version}".format(name = toolchain['name'], version = toolchain['version']) + +def add_package_if_module_exists(package, installation_path, stack): + module_filename = package['Version'] + if package['Toolchain'] != "system": + module_filename += '-' + module_filename += package['Toolchain'] + module_filename += '.lua' + + module_path = installation_path / "modules" / "all" / package['Category'] / package['Name'] / module_filename + + if module_path.exists(): + stack.append(package) + +def extract_easyconfig_info(eb, installation_path, stack): + try: + parser = EasyConfigParser(filename = str(eb)) + ec = parser.get_config_dict(validate = False) + + package = { + 'Name': ec['name'], + 'Version': ec['version'], + 'Homepage': ec['homepage'], + 'Description': ec['description'], + 'Toolchain': toolchain_to_maybe_string(ec['toolchain']), + 'Category': ec.get('moduleclass'), + } + + add_package_if_module_exists(package, installation_path, stack) + + except Exception as excpt: + print(f"Failed: {eb}> {excpt}") + + return stack + +def get_installation_target_package_list(installation_path): + software_path = installation_path / "software" + + nested_report_ebs = (p.glob("*.eb") for p in software_path.glob("*/*/easybuild/reprod") if p.is_dir()) + report_ebs = itertools.chain.from_iterable(nested_report_ebs) + + stack = list() + for eb in report_ebs: + extract_easyconfig_info(eb, installation_path, stack) + + return stack + +def homepage_link(text, url): + if pd.notna(url) and url: + return f"[{text}]({url})" + return text + +def clean_software_description(software_table, collapse_descr = True): + software_table['Description'] = (software_table['Description'] + .fillna("") + .str.replace(r"\s+", " ", regex=True) + .str.strip()) + + if collapse_descr == True: + software_table['Description'] = software_table['Description'].apply( + lambda d: ( + "
" + "Show" + f"{d}" + "
" + ) + ) + +def generate_installation_target_package_table(stack, collapse_descr = True): + df = pd.DataFrame(columns=['Name', 'Version', 'Homepage', 'Description', 'Toolchain', 'Category']) + + if len(stack) > 0: + df = pd.concat([df, pd.DataFrame(stack)], ignore_index=True) + clean_software_description(df, collapse_descr) + + if len(df) > 0: + df['Software'] = df.apply( + lambda row: homepage_link(row['Name'], row['Homepage']), + axis=1, + ) + else: + df['Software'] = pd.Series() + + df = df[['Name', 'Version', 'Software', 'Toolchain', 'Category', 'Description']] + + return df + +def get_build_software_tables(base_path: pathlib.Path, build_number: str, releases: dict[str, dict[str, dict[str, list[str]]]]): + software_tables = dict() + + release = releases.get(build_number) + if release is None: + return software_tables + + for cluster in release.keys(): + for arch in release[cluster].keys(): + for release_id in release[cluster][arch]: + target_installation_path = base_path / cluster / arch / release_id / build_number + stack = get_installation_target_package_list(target_installation_path) + table = generate_installation_target_package_table(stack) + + # One build per (cluster, arch) in release! + software_tables[(cluster, arch, release_id)] = table + + return software_tables + +class ArchitectureBuilds(typing.NamedTuple): + architecture: str + toolchains: set[str] + + def __str__(self) -> str: + toolchain_list = ", ".join(self.toolchains) + return self.architecture + "(" + toolchain_list + ")" + + def __hash__(self) -> int: + return hash(self.architecture) + +class ClusterBuilds(typing.NamedTuple): + cluster: str + architecture_builds: set[ArchitectureBuilds] + + def __str__(self) -> str: + res = "" + res += "" + self.cluster + "" + res += "" + ", ".join(map(lambda s: str(s), self.architecture_builds)) + "" + res += "" + return res + + def __hash__(self) -> int: + return hash(self.cluster) + +class RelaseBuilds(typing.NamedTuple): + cluster_builds: set[ClusterBuilds] + + def __str__(self) -> str: + res = "
Show " + res += " ".join(map(lambda s: str(s), self.cluster_builds)) + res += "
" + return res + + def __hash__(self) -> int: + return hash("_".join(self.cluster_builds)) + +def merge_release_package_installations(tables): + df = pd.concat(tables, ignore_index=True) + + if len(df) == 0: + df = pd.DataFrame(columns=['Name', 'Version', 'Software', 'Category', 'Description', 'Built instances']) + return df + + descriptions = df.apply(lambda row: {row['Description']}, axis=1) + categories = df.apply(lambda row: {row['Category']}, axis=1) + df = df[['Name', 'Version', 'Software', 'Cluster', 'Architecture', 'Toolchain']] + df['Description'] = descriptions + df['Category'] = categories + + df = df.groupby( + ['Name', 'Version', 'Software', 'Cluster', 'Architecture'], + as_index=False, + ).aggregate( + { + 'Toolchain': (lambda s: set(s)), + 'Category': (lambda s: functools.reduce(lambda acc, v: acc | v, s, set())), + 'Description': (lambda s: functools.reduce(lambda acc, v: acc | v, s, set())), + } + ) + + architecture_builds = df.apply(lambda row: ArchitectureBuilds(architecture=row['Architecture'], toolchains=row['Toolchain']), axis=1) + df = df[['Name', 'Version', 'Software', 'Cluster', 'Category', 'Description']] + df['ArchitectureBuilds'] = architecture_builds + + df = df.groupby( + ['Name', 'Version', 'Software', 'Cluster'], + as_index=False, + ).aggregate( + { + 'ArchitectureBuilds': (lambda s: set(s)), + 'Category': (lambda s: functools.reduce(lambda acc, v: acc | v, s, set())), + 'Description': (lambda s: functools.reduce(lambda acc, v: acc | v, s, set())), + } + ) + + cluster_builds = df.apply(lambda row: ClusterBuilds(cluster=row['Cluster'], architecture_builds=row['ArchitectureBuilds']), axis=1) + df = df[['Name', 'Version', 'Software', 'Category', 'Description']] + df['ClusterBuilds'] = cluster_builds + + df = df.groupby( + ['Name', 'Version', 'Software'], + as_index=False, + ).aggregate( + { + 'ClusterBuilds': (lambda s: set(s)), + 'Category': (lambda s: functools.reduce(lambda acc, v: acc | v, s, set())), + 'Description': (lambda s: functools.reduce(lambda acc, v: acc | v, s, set())), + } + ) + + release_builds = df.apply(lambda row: RelaseBuilds(cluster_builds=row['ClusterBuilds']), axis=1) + df = df[['Name', 'Version', 'Software', 'Category', 'Description']] + df['Built instances'] = release_builds.apply(lambda r: str(r)) + + if functools.reduce(lambda acc, v: max(acc, v), df['Category'].apply(len), 1) != 1: + raise Exception(f"Ambigious category definitions in software set.") + if functools.reduce(lambda acc, v: max(acc, v), df['Description'].apply(len), 1) != 1: + raise Exception(f"Ambigious description definitions in software set.") + + df['Category'] = df['Category'].apply(lambda x: x.pop()) + df['Description'] = df['Description'].apply(lambda x: x.pop()) + + df = df.sort_values(by=['Name', 'Version']) + + return df + +def merge_build_tables_per_release(build_tables): + tables_listed_per_release = dict() + for release in build_tables.keys(): + cluster, arch, release_id = release + table = build_tables[release] + table['Cluster'] = pd.Series([cluster for i in range(len(table))]) + table['Architecture'] = pd.Series([arch for i in range(len(table))]) + + if tables_listed_per_release.get(release_id) is None: + tables_listed_per_release[release_id] = [table] + else: + tables_listed_per_release[release_id].append(table) + + return { release: merge_release_package_installations(tables) for release, tables in tables_listed_per_release.items() } + +def get_build_tables_per_release(base_path: pathlib.Path, build_number: str, releases: dict[str, dict[str, dict[str, list[str]]]]): + build_tables = get_build_software_tables(base_path, build_number, releases) + build_tables_per_release = merge_build_tables_per_release(build_tables) + + return build_tables_per_release + +def save_build_tables_per_release(build_tables_per_release, output_path: pathlib.Path): + for release, table in build_tables_per_release.items(): + output_file = output_path / (release + ".md") + with open(str(output_file), "w") as file: + file.write( + table[ + [ + 'Software', + 'Version', + 'Category', + 'Built instances', + 'Description', + ] + ].to_markdown(index = False)) + +def get_software_installation_config(config_path: pathlib.Path) -> dict: + with open(str(config_path), 'r') as config_file: + config = yaml.safe_load(config_file) + return config + +def get_releases(config: dict) -> dict[str, dict[str, dict[str, list[str]]]]: + return config['sofware'] + +def get_base_path(config: dict) -> pathlib.Path: + path: str = config['base_path'] + return pathlib.Path(path) + +def create_build_table_pages_per_release( + configuration: pathlib.Path, + build_number: str, + output_path: pathlib.Path +): + config = get_software_installation_config(configuration) + + releases = get_releases(config) + base_path = get_base_path(config) + + build_tables = get_build_tables_per_release(base_path, build_number, releases) + save_build_tables_per_release(build_tables, output_path) + +def main(): + parser = argparse.ArgumentParser( + prog = "extract_module_metadata", + description = "Collect the modules installed with the easybuild stack in a set of pages for easy search in the UL HPC documentation" + ) + + parser.add_argument("configuration", type=pathlib.Path, help="a YAML file with the configurations that will be processed") + parser.add_argument("release", type=str, help="the release in the configuration file for which the sfoftware tables will be generated") + parser.add_argument("output_path", type=pathlib.Path, help="path to the directory where the software list will be stored") + + args = parser.parse_args() + + create_build_table_pages_per_release(args.configuration, args.release, args.output_path) + +if __name__ == "__main__": + main() + +def set_nested_map(mp, entries, value): + if len(entries) == 0: + return dict() + + entry = entries.pop(0) + if len(entries) == 0: + mp[entry] = value + return mp + + if len(mp) == 0: + mp[entry] = dict() + + val = set_nested_map(mp[entry], entries, value) + mp[entry] = val + + return mp + +# e.g. software_tables = set_nested_map(software_tables, [cluster, arch, version], table) + diff --git a/scripts/software_installations.yaml b/scripts/software_installations.yaml new file mode 100644 index 000000000..580d2ad97 --- /dev/null +++ b/scripts/software_installations.yaml @@ -0,0 +1,25 @@ +sofware: + rhel810-20260107: + aion: + epyc: + - 2025a + - 2024a + - 2023b + iris: + broadwell: + - 2025a + - 2024a + - 2023b + skylake: + - 2025a + - 2024a + - 2023b + gpu: + - 2025a + - 2024a + - 2023b + hopper: + - 2025a + - 2024a + - 2023b +base_path: /opt/apps/easybuild/systems From c97bb165d24ca971f09b0b1353c5aa3587e29593 Mon Sep 17 00:00:00 2001 From: Georgios Kafanas Date: Fri, 21 Aug 2026 10:11:21 +0200 Subject: [PATCH 17/20] [REFACTOR] Remove broken software set lists --- docs/software/swsets/2023b.md | 465 ---------------------------------- docs/software/swsets/2024a.md | 349 ------------------------- docs/software/swsets/2025a.md | 12 - mkdocs.yml | 3 - 4 files changed, 829 deletions(-) delete mode 100644 docs/software/swsets/2023b.md delete mode 100644 docs/software/swsets/2024a.md delete mode 100644 docs/software/swsets/2025a.md diff --git a/docs/software/swsets/2023b.md b/docs/software/swsets/2023b.md deleted file mode 100644 index 238858f8e..000000000 --- a/docs/software/swsets/2023b.md +++ /dev/null @@ -1,465 +0,0 @@ -| Software | Version | Architectures | Clusters | Category | Description | -|:------------------------------------------------------------------------------------------------------|:-------------------|:------------------------------------------------------------------------------|:-----------|:-----------|:---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------| -| [4ti2](https://4ti2.github.io/) | 1.6.10 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowA software package for algebraic, geometric and combinatorial problems on linear spaces
| -| [ATK](https://developer.gnome.org/atk/) | 2.38.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | vis |
ShowATK provides the set of accessibility interfaces that are implemented by other toolkits and applications. Using the ATK interfaces, accessibility tools have full access to view and control running applications.
| -| [Abseil](https://abseil.io/) | 20240116.1 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowAbseil is an open-source collection of C++ library code designed to augment the C++ standard library. The Abseil library code is collected from Google's own C++ code base, has been extensively tested and used in production, and is the same code we depend on in our daily coding lives.
| -| [Apptainer](https://github.com/apptainer/apptainer) | 1.4.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowApptainer is an open source container platform designed to be simple, fast, and secure. Many container platforms are available, but Apptainer is designed for ease-of-use on shared systems and in high performance computing (HPC) environments
| -| [Armadillo](https://arma.sourceforge.net/) | 12.8.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | numlib |
ShowArmadillo is an open-source C++ linear algebra library (matrix maths) aiming towards a good balance between speed and ease of use. Integer, floating point and complex numbers are supported, as well as a subset of trigonometric and statistics functions.
| -| [Arrow](https://arrow.apache.org) | 16.1.0 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | data |
ShowApache Arrow (incl. PyArrow Python bindings), a cross-language development platform for in-memory data.
| -| [Autoconf](https://www.gnu.org/software/autoconf/) | 2.71 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | devel |
ShowAutoconf is an extensible package of M4 macros that produce shell scripts to automatically configure software source code packages. These scripts can adapt the packages to many kinds of UNIX-like systems without manual user intervention. Autoconf creates a configuration script for a package from a template file that lists the operating system features that the package can use, in the form of M4 macro calls.
| -| [Automake](https://www.gnu.org/software/automake/automake.html) | 1.16.5 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | devel |
ShowAutomake: GNU Standards-compliant Makefile generator
| -| [Autotools](https://autotools.io) | 20220317 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | devel |
ShowThis bundle collect the standard GNU build tools: Autoconf, Automake and libtool
| -| [BEDTools](https://bedtools.readthedocs.io/) | 2.31.1 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | bio |
ShowBEDTools: a powerful toolset for genome arithmetic. The BEDTools utilities allow one to address common genomics tasks such as finding feature overlaps and computing coverage. The utilities are largely based on four widely-used file formats: BED, GFF/GTF, VCF, and SAM/BAM.
| -| [BLAST+](https://blast.ncbi.nlm.nih.gov/) | 2.16.0 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | bio |
ShowBasic Local Alignment Search Tool, or BLAST, is an algorithm for comparing primary biological sequence information, such as the amino-acid sequences of different proteins or the nucleotides of DNA sequences.
| -| [BLIS](https://github.com/flame/blis/) | 0.9.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | numlib |
ShowBLIS is a portable software framework for instantiating high-performance BLAS-like dense linear algebra libraries.
| -| [BRiAl](https://github.com/BRiAl/BRiAl) | 1.2.12 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowBRiAl is the legacy version of PolyBoRi maintained by sagemath developers.
| -| [BamTools](https://github.com/pezmaster31/bamtools) | 2.5.2 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | bio |
ShowBamTools provides both a programmer's API and an end-user's toolkit for handling BAM files.
| -| [BeautifulSoup](https://www.crummy.com/software/BeautifulSoup) | 4.12.2 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | data |
ShowBeautiful Soup is a Python library designed for quick turnaround projects like screen-scraping.
| -| [Biopython](https://www.biopython.org) | 1.84 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | bio |
ShowBiopython is a set of freely available tools for biological computation written in Python by an international team of developers. It is a distributed collaborative effort to develop Python libraries and applications which address the needs of current and future work in bioinformatics.
| -| [Bison](https://www.gnu.org/software/bison) | 3.8.2 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lang |
ShowBison is a general-purpose parser generator that converts an annotated context-free grammar into a deterministic LR or generalized LR (GLR) parser employing LALR(1) parser tables.
| -| [Boost](https://www.boost.org/) | 1.83.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | devel |
ShowBoost provides free peer-reviewed portable C++ source libraries.
| -| [Bowtie2](https://github.com/BenLangmead/bowtie2) | 2.5.4 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | bio |
ShowBowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences. It is particularly good at aligning reads of about 50 up to 100s or 1,000s of characters, and particularly good at aligning to relatively long (e.g. mammalian) genomes. Bowtie 2 indexes the genome with an FM Index to keep its memory footprint small: for the human genome, its memory footprint is typically around 3.2 GB. Bowtie 2 supports gapped, local, and paired-end alignment modes.
| -| [Brotli-python](https://github.com/google/brotli) | 1.1.0 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowBrotli is a generic-purpose lossless compression algorithm that compresses data using a combination of a modern variant of the LZ77 algorithm, Huffman coding and 2nd order context modeling, with a compression ratio comparable to the best currently available general-purpose compression methods. It is similar in speed with deflate but offers more dense compression. The specification of the Brotli Compressed Data Format is defined in RFC 7932.
| -| [Brotli](https://github.com/google/brotli) | 1.1.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowBrotli is a generic-purpose lossless compression algorithm that compresses data using a combination of a modern variant of the LZ77 algorithm, Huffman coding and 2nd order context modeling, with a compression ratio comparable to the best currently available general-purpose compression methods. It is similar in speed with deflate but offers more dense compression. The specification of the Brotli Compressed Data Format is defined in RFC 7932.
| -| [Brunsli](https://github.com/google/brunsli/) | 0.1 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowBrunsli is a lossless JPEG repacking library.
| -| [CFITSIO](https://heasarc.gsfc.nasa.gov/fitsio/) | 4.3.1 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowCFITSIO is a library of C and Fortran subroutines for reading and writing data files in FITS (Flexible Image Transport System) data format.
| -| [CGAL](https://www.cgal.org/) | 5.6.1 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | numlib |
ShowThe goal of the CGAL Open Source Project is to provide easy access to efficient and reliable geometric algorithms in the form of a C++ library.
| -| [CMake](https://www.cmake.org) | 3.27.6 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | devel |
ShowCMake, the cross-platform, open-source build system. CMake is a family of tools designed to build, test and package software.
| -| [CP2K](https://www.cp2k.org/) | 2023.1 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | chem |
ShowCP2K is a freely available (GPL) program, written in Fortran 95, to perform atomistic and molecular simulations of solid state, liquid, molecular and biological systems. It provides a general framework for different methods such as e.g. density functional theory (DFT) using a mixed Gaussian and plane waves approach (GPW), and classical pair and many-body potentials.
| -| [CUDA](https://developer.nvidia.com/cuda-toolkit) | 12.6.0 | NVIDIA Tesla | iris | system |
ShowCUDA (formerly Compute Unified Device Architecture) is a parallel computing platform and programming model created by NVIDIA and implemented by the graphics processing units (GPUs) that they produce. CUDA gives developers access to the virtual instruction set and memory of the parallel computational elements in CUDA GPUs.
| -| [CUDD](https://github.com/ivmai/cudd) | 3.0.0 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowThe CUDD package is a package written in C for the manipulation of decision diagrams. It supports binary decision diagrams (BDDs), algebraic decision diagrams (ADDs), and Zero-Suppressed BDDs (ZDDs).
| -| [Catch2](https://github.com/catchorg/Catch2) | 2.13.9 | Intel Sapphire Rapids | iris | lib |
ShowA modern, C++-native, header-only, test framework for unit-tests, TDD and BDD - using C++11, C++14, C++17 and later
| -| [Catch2](https://github.com/catchorg/Catch2) | 2.13.9
3.8.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowA modern, C++-native, header-only, test framework for unit-tests, TDD and BDD - using C++11, C++14, C++17 and later
| -| [Cbc](https://github.com/coin-or/Cbc) | 2.10.11 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowCbc (Coin-or branch and cut) is an open-source mixed integer linear programming solver written in C++. It can be used as a callable library or using a stand-alone executable.
| -| [Cereal](https://uscilab.github.io/cereal/) | 1.3.2 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
Showcereal is a header-only C++11 serialization library. cereal takes arbitrary data types and reversibly turns them into different representations, such as compact binary encodings, XML, or JSON. cereal was designed to be fast, light-weight, and easy to extend - it has no external dependencies and can be easily bundled with other code or used standalone.
| -| [Cgl](https://github.com/coin-or/Cgl) | 0.60.8 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowThe COIN-OR Cut Generation Library (Cgl) is a collection of cut generators that can be used with other COIN-OR packages that make use of cuts, such as, among others, the linear solver Clp or the mixed integer linear programming solvers Cbc or BCP. Cgl uses the abstract class OsiSolverInterface (see Osi) to use or communicate with a solver. It does not directly call a solver.
| -| [Clp](https://github.com/coin-or/Clp) | 1.17.9 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowClp (Coin-or linear programming) is an open-source linear programming solver. It is primarily meant to be used as a callable library, but a basic, stand-alone executable version is also available.
| -| [CoCoALib](https://cocoa.dima.unige.it/cocoa/cocoalib/) | 0.99850 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowCoCoALib is a free GPL3 C++ library for doing Computations in Commutative Algebra.
| -| [CoinUtils](https://github.com/coin-or/CoinUtils) | 2.11.10 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowCoinUtils (Coin-OR Utilities) is an open-source collection of classes and functions that are generally useful to more than one COIN-OR project.
| -| [CubeGUI](https://www.scalasca.org/software/cube-4.x/download.html) | 4.8.2 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | perf |
ShowCube, which is used as performance report explorer for Scalasca and Score-P, is a generic tool for displaying a multi-dimensional performance space consisting of the dimensions (i) performance metric, (ii) call path, and (iii) system resource. Each dimension can be represented as a tree, where non-leaf nodes of the tree can be collapsed or expanded to achieve the desired level of granularity. This module provides the Cube graphical report explorer.
| -| [CubeLib](https://www.scalasca.org/software/cube-4.x/download.html) | 4.8.2 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | perf |
ShowCube, which is used as performance report explorer for Scalasca and Score-P, is a generic tool for displaying a multi-dimensional performance space consisting of the dimensions (i) performance metric, (ii) call path, and (iii) system resource. Each dimension can be represented as a tree, where non-leaf nodes of the tree can be collapsed or expanded to achieve the desired level of granularity. This module provides the Cube general purpose C++ library component and command-line tools.
| -| [CubeWriter](https://www.scalasca.org/software/cube-4.x/download.html) | 4.8.2 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | perf |
ShowCube, which is used as performance report explorer for Scalasca and Score-P, is a generic tool for displaying a multi-dimensional performance space consisting of the dimensions (i) performance metric, (ii) call path, and (iii) system resource. Each dimension can be represented as a tree, where non-leaf nodes of the tree can be collapsed or expanded to achieve the desired level of granularity. This module provides the Cube high-performance C writer library component.
| -| [Cython](https://cython.org/) | 3.0.10 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lang |
ShowCython is an optimising static compiler for both the Python programming language and the extended Cython programming language (based on Pyrex).
| -| [DBus](https://dbus.freedesktop.org/) | 1.15.8 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | devel |
ShowD-Bus is a message bus system, a simple way for applications to talk to one another. In addition to interprocess communication, D-Bus helps coordinate process lifecycle; it makes it simple and reliable to code a "single instance" application or daemon, and to launch applications and daemons on demand when their services are needed.
| -| [DendroPy](https://jeetsukumaran.github.io/DendroPy) | 5.0.1 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | bio |
ShowA Python library for phylogenetics and phylogenetic computing: reading, writing, simulation, processing and manipulation of phylogenetic trees (phylogenies) and characters.
| -| [Doxygen](https://www.doxygen.org) | 1.9.8 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | devel |
ShowDoxygen is a documentation system for C++, C, Java, Objective-C, Python, IDL (Corba and Microsoft flavors), Fortran, VHDL, PHP, C#, and to some extent D.
| -| [E-ANTIC](https://github.com/flatsurf/e-antic) | 2.0.2 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowE-ANTIC is a C/C++ library to deal with real embedded number fields built on top of ANTIC (https://github.com/wbhart/antic). Its aim is to have as fast as possible exact arithmetic operations and comparisons.
| -| [ECL](https://ecl.common-lisp.dev/) | 24.5.10 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | lang |
ShowECL (Embeddable Common-Lisp) is an interpreter of the Common-Lisp language as described in the X3J13 Ansi specification, featuring CLOS (Common-Lisp Object System), conditions, loops, etc, plus a translator to C, which can produce standalone executables.
| -| [Eigen](https://eigen.tuxfamily.org) | 3.4.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowEigen is a C++ template library for linear algebra: matrices, vectors, numerical solvers, and related algorithms.
| -| [FEniCS-Basix-Python](https://github.com/FEniCS/basix) | 0.9.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | cae |
ShowBasix is a finite element definition and tabulation runtime library - Python binding
| -| [FEniCS-Basix](https://github.com/FEniCS/basix) | 0.9.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | cae |
ShowBasix is a finite element definition and tabulation runtime library - C++ library
| -| [FEniCS-DOLFINx-Python](https://github.com/FEniCS/dolfinx) | 0.9.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | cae |
ShowDOLFINx is the computational environment of FEniCSx - Python binding
| -| [FEniCS-DOLFINx](https://github.com/FEniCS/dolfinx) | 0.9.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | cae |
ShowDOLFINx is the computational environment of FEniCSx - C++ library
| -| [FEniCS-FFCx](https://github.com/FEniCS/ffcx) | 0.9.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | cae |
ShowFFCx is a compiler for finite element variational forms
| -| [FEniCS-UFL](https://github.com/FEniCS/ufl) | 2024.2.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowThe Unified Form Language (UFL) is a domain-specific language for defining variational forms
| -| [FEniCS-ufcx](https://github.com/FEniCS/ffcx) | 0.9.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | cae |
ShowFFCx provides the ufcx.h interface header for generated finite element kernels, used by DOLFINx.
| -| [FFLAS-FFPACK](https://linbox-team.github.io/fflas-ffpack/) | 2.5.0 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowFinite Field Linear Algebra Subroutines / Package
| -| [FFTW.MPI](https://www.fftw.org) | 3.3.10 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | numlib |
ShowFFTW is a C subroutine library for computing the discrete Fourier transform (DFT) in one or more dimensions, of arbitrary input size, and of both real and complex data.
| -| [FFTW](https://www.fftw.org) | 3.3.10 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | numlib |
ShowFFTW is a C subroutine library for computing the discrete Fourier transform (DFT) in one or more dimensions, of arbitrary input size, and of both real and complex data.
| -| [FFmpeg](https://www.ffmpeg.org/) | 6.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | vis |
ShowA complete, cross-platform solution to record, convert and stream audio and video.
| -| [FLAC](https://xiph.org/flac/) | 1.4.3 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowFLAC stands for Free Lossless Audio Codec, an audio format similar to MP3, but lossless, meaning that audio is compressed in FLAC without any loss in quality.
| -| [FLINT](https://www.flintlib.org/) | 3.1.1 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowFLINT (Fast Library for Number Theory) is a C library in support of computations in number theory. Operations that can be performed include conversions, arithmetic, computing GCDs, factoring, solving linear systems, and evaluating special functions. In addition, FLINT provides various low-level routines for fast arithmetic. FLINT is extensively documented and tested.
| -| [FLTK](https://www.fltk.org) | 1.3.9 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | vis |
ShowFLTK is a cross-platform C++ GUI toolkit for UNIX/Linux (X11), Microsoft Windows, and MacOS X. FLTK provides modern GUI functionality without the bloat and supports 3D graphics via OpenGL and its built-in GLUT emulation.
| -| [FastTree](http://www.microbesonline.org/fasttree/) | 2.1.11 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | bio |
ShowFastTree infers approximately-maximum-likelihood phylogenetic trees from alignments of nucleotide or protein sequences. FastTree can handle alignments with up to a million of sequences in a reasonable amount of time and memory.
| -| [FlexiBLAS](https://gitlab.mpi-magdeburg.mpg.de/software/flexiblas-release) | 3.3.1 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowFlexiBLAS is a wrapper library that enables the exchange of the BLAS and LAPACK implementation used by a program without recompiling or relinking it.
| -| [FreeImage](http://freeimage.sourceforge.net) | 3.18.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | vis |
ShowFreeImage is an Open Source library project for developers who would like to support popular graphics image formats like PNG, BMP, JPEG, TIFF and others as needed by today's multimedia applications. FreeImage is easy to use, fast, multithreading safe.
| -| [FriBidi](https://github.com/fribidi/fribidi) | 1.0.13 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lang |
ShowThe Free Implementation of the Unicode Bidirectional Algorithm.
| -| [GCC](https://gcc.gnu.org/) | 13.2.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | compiler |
ShowThe GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,...).
| -| [GCCcore](https://gcc.gnu.org/) | 13.2.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | compiler |
ShowThe GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,...).
| -| [GDAL](https://www.gdal.org) | 3.9.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | data |
ShowGDAL is a translator library for raster geospatial data formats that is released under an X/MIT style Open Source license by the Open Source Geospatial Foundation. As a library, it presents a single abstract data model to the calling application for all supported formats. It also comes with a variety of useful commandline utilities for data translation and processing.
| -| [GDB](https://www.gnu.org/software/gdb/gdb.html) | 13.2 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | debugger |
ShowThe GNU Project Debugger
| -| [GDRCopy](https://github.com/NVIDIA/gdrcopy) | 2.4 | NVIDIA Tesla | iris | lib |
ShowA low-latency GPU memory copy library based on NVIDIA GPUDirect RDMA technology.
| -| [GEOS](https://trac.osgeo.org/geos) | 3.12.1 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowGEOS (Geometry Engine - Open Source) is a C++ port of the Java Topology Suite (JTS)
| -| [GLPK](https://www.gnu.org/software/glpk/) | 5.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowThe GLPK (GNU Linear Programming Kit) package is intended for solving large-scale linear programming (LP), mixed integer programming (MIP), and other related problems. It is a set of routines written in ANSI C and organized in the form of a callable library.
| -| [GLib](https://www.gtk.org/) | 2.78.1 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | vis |
ShowGLib is one of the base libraries of the GTK+ project
| -| [GMP-ECM](https://gitlab.inria.fr/zimmerma/ecm) | 7.0.5 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowYet another implementation of the Elliptic Curve Method.
| -| [GMP](https://gmplib.org/) | 6.3.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowGMP is a free library for arbitrary precision arithmetic, operating on signed integers, rational numbers, and floating point numbers.
| -| [GObject-Introspection](https://gi.readthedocs.io/en/latest/) | 1.78.1 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | devel |
ShowGObject introspection is a middleware layer between C libraries (using GObject) and language bindings. The C library can be scanned at compile time and generate a metadata file, in addition to the actual native C library. Then at runtime, language bindings can read this metadata and automatically provide bindings to call into the C library.
| -| [GROMACS](https://www.gromacs.org) | 2024.4 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | bio |
ShowGROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles. This is a CPU only build, containing both MPI and threadMPI binaries for both single and double precision. It also contains the gmxapi extension for the single precision MPI build.
| -| [GSL](https://www.gnu.org/software/gsl/) | 2.7 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | numlib |
ShowThe GNU Scientific Library (GSL) is a numerical library for C and C++ programmers. The library provides a wide range of mathematical routines such as random number generators, special functions and least-squares fitting.
| -| [GTK3](https://developer.gnome.org/gtk3/stable/) | 3.24.39 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | vis |
ShowGTK+ is the primary library used to construct user interfaces in GNOME. It provides all the user interface controls, or widgets, used in a common graphical application. Its object-oriented API allows you to construct user interfaces without dealing with the low-level details of drawing and device interaction.
| -| [Gdk-Pixbuf](https://docs.gtk.org/gdk-pixbuf/) | 2.42.10 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | vis |
ShowThe Gdk Pixbuf is a toolkit for image loading and pixel buffer manipulation. It is used by GTK+ 2 and GTK+ 3 to load and manipulate images. In the past it was distributed as part of GTK+ 2 but it was split off into a separate package in preparation for the change to GTK+ 3.
| -| [Ghostscript](https://ghostscript.com) | 10.02.1 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowGhostscript is a versatile processor for PostScript data with the ability to render PostScript to different targets. It used to be part of the cups printing stack, but is no longer used for that.
| -| [GitPython](https://gitpython.readthedocs.org) | 3.1.42 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowGitPython is a python library used to interact with Git repositories
| -| [Givaro](https://github.com/linbox-team/givaro) | 4.2.0 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowC++ library for arithmetic and algebraic computations
| -| [Go](https://www.golang.org) | 1.22.1 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | compiler |
ShowGo is an open source programming language that makes it easy to build simple, reliable, and efficient software.
| -| [Greenlet](https://github.com/python-greenlet/greenlet) | 3.0.3 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | devel |
ShowThe greenlet package is a spin-off of Stackless, a version of CPython that supports micro-threads called "tasklets". Tasklets run pseudo-concurrently (typically in a single or a few OS-level threads) and are synchronized with data exchanges on "channels". A "greenlet", on the other hand, is a still more primitive notion of micro-thread with no implicit scheduling; coroutines, in other words. This is useful when you want to control exactly when your code runs.
| -| [Gurobi](https://www.gurobi.com) | 11.0.0 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowThe Gurobi Optimizer is a state-of-the-art solver for mathematical programming. The solvers in the Gurobi Optimizer were designed from the ground up to exploit modern architectures and multi-core processors, using the most advanced implementations of the latest algorithms.
| -| [HDF5](https://portal.hdfgroup.org/display/support) | 1.14.3 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | data |
ShowHDF5 is a data model, library, and file format for storing and managing data. It supports an unlimited variety of datatypes, and is designed for flexible and efficient I/O and for high volume and complex data.
| -| [HDF](https://support.hdfgroup.org/products/hdf4/) | 4.2.16-2 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | data |
ShowHDF (also known as HDF4) is a library and multi-object file format for storing and managing data between machines.
| -| [HMMER](http://hmmer.org/) | 3.4 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | bio |
ShowHMMER is used for searching sequence databases for homologs of protein sequences, and for making protein sequence alignments. It implements methods using probabilistic models called profile hidden Markov models (profile HMMs). Compared to BLAST, FASTA, and other sequence alignment and database search tools based on older scoring methodology, HMMER aims to be significantly more accurate and more able to detect remote homologs because of the strength of its underlying mathematical models. In the past, this strength came at significant computational expense, but in the new HMMER3 project, HMMER is now essentially as fast as BLAST.
| -| [HOOMD-blue](https://github.com/glotzerlab/hoomd-blue) | 5.1.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | phys |
ShowHOOMD-blue is a Python package that runs simulations of particle systems on CPUs and GPUs. It performs hard particle Monte Carlo simulations of a variety of shape classes and molecular dynamics simulations of particles with a range of pair, bond, angle, and other potentials. Many features are targeted at the soft matter research community, though the code is general and capable of many types of particle simulations.
| -| [HTSlib](https://www.htslib.org/) | 1.19.1 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | bio |
ShowA C library for reading/writing high-throughput sequencing data. This package includes the utilities bgzip and tabix
| -| [HarfBuzz](https://www.freedesktop.org/wiki/Software/HarfBuzz) | 8.2.2 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | vis |
ShowHarfBuzz is an OpenType text shaping engine.
| -| [HyperQueue](https://it4innovations.github.io/hyperqueue/stable/) | 0.20.0 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowHyperQueue is a tool designed to simplify execution of large workflows (task graphs) on HPC clusters. It allows you to execute a large number of tasks in a simple way, without having to manually submit jobs into batch schedulers like Slurm or PBS. You just specify what you want to compute – HyperQueue will automatically ask for computational resources and dynamically load-balance tasks across all allocated nodes and cores. HyperQueue can also work without Slurm/PBS as a general task executor.
| -| [Hypre](https://computation.llnl.gov/projects/hypre-scalable-linear-solvers-multigrid-methods) | 2.31.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | numlib |
ShowHypre is a library for solving large, sparse linear systems of equations on massively parallel computers. The problems of interest arise in the simulation codes being developed at LLNL and elsewhere to study physical phenomena in the defense, environmental, energy, and biological sciences.
| -| [ICU](https://icu.unicode.org) | 74.1 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowICU is a mature, widely used set of C/C++ and Java libraries providing Unicode and Globalization support for software applications.
| -| [IML](https://cs.uwaterloo.ca/~astorjoh/iml.html) | 1.0.5 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowIML is a free library of C source code which implements algorithms for computing exact solutions to dense systems of linear equations over the integers.
| -| [IPython](https://ipython.org/index.html) | 8.17.2 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowIPython provides a rich architecture for interactive computing with: Powerful interactive shells (terminal and Qt-based). A browser-based notebook with support for code, text, mathematical expressions, inline plots and other rich media. Support for interactive data visualization and use of GUI toolkits. Flexible, embeddable interpreters to load into your own projects. Easy to use, high performance tools for parallel computing.
| -| [ISA-L](https://github.com/intel/isa-l) | 2.31.0 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowIntelligent Storage Acceleration Library
| -| [ISL](https://libisl.sourceforge.io) | 0.26 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
Showisl is a library for manipulating sets and relations of integer points bounded by linear constraints.
| -| [ImageMagick](https://www.imagemagick.org/) | 7.1.1-34 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | vis |
ShowImageMagick is a software suite to create, edit, compose, or convert bitmap images
| -| [Imath](https://imath.readthedocs.io/en/latest/) | 3.1.9 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowImath is a C++ and python library of 2D and 3D vector, matrix, and math operations for computer graphics
| -| [JasPer](https://www.ece.uvic.ca/~frodo/jasper/) | 4.0.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | vis |
ShowThe JasPer Project is an open-source initiative to provide a free software-based reference implementation of the codec specified in the JPEG-2000 Part-1 standard.
| -| [Java](http://openjdk.java.net) | 11.0.27 | Intel Broadwell | iris | lang |
ShowJava Platform, Standard Edition (Java SE) lets you develop and deploy Java applications on desktops and servers.
| -| [Java](http://openjdk.java.net) | 11.0.27
17.0.15 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | lang |
ShowJava Platform, Standard Edition (Java SE) lets you develop and deploy Java applications on desktops and servers.
| -| [Java](https://java.com/) | 11 | Intel Broadwell | iris | lang |
ShowJava Platform, Standard Edition (Java SE) lets you develop and deploy Java applications on desktops and servers.
| -| [Java](https://java.com/) | 11
17
21 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | lang |
ShowJava Platform, Standard Edition (Java SE) lets you develop and deploy Java applications on desktops and servers.
| -| [Java](https://openjdk.org) | 21.0.8 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | lang |
ShowJava Platform, Standard Edition (Java SE) lets you develop and deploy Java applications on desktops and servers.
| -| [JsonCpp](https://open-source-parsers.github.io/jsoncpp-docs/doxygen/index.html) | 1.9.5 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowJsonCpp is a C++ library that allows manipulating JSON values, including serialization and deserialization to and from strings. It can also preserve existing comment in unserialization/serialization steps, making it a convenient format to store user input files.
| -| [Julia](https://julialang.org) | 1.11.4 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | lang |
ShowJulia is a high-level, high-performance dynamic programming language for numerical computing
| -| [Jupyter-bundle](https://jupyter.org/) | 20240522 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowThis bundle collects a range of Jupyter interfaces (Lab, Notebook and nbclassic), extensions (Jupyter Server Proxy, Jupyter Resource Monitor, Jupyter Lmod) and the JupyterHub.
| -| [JupyterHub](https://jupyter.org) | 4.1.5 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowJupyterHub is a multiuser version of the Jupyter (IPython) notebook designed for centralized deployments in companies, university classrooms and research labs.
| -| [JupyterLab](https://jupyter.org/) | 4.2.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowJupyterLab is the next-generation user interface for Project Jupyter offering all the familiar building blocks of the classic Jupyter Notebook (notebook, terminal, text editor, file browser, rich outputs, etc.) in a flexible and powerful user interface. JupyterLab will eventually replace the classic Jupyter Notebook.
| -| [JupyterNotebook](https://jupyter.org/) | 7.2.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowThe Jupyter Notebook is the original web application for creating and sharing computational documents. It offers a simple, streamlined, document-centric experience.
| -| [KaHIP](https://kahip.github.io/) | 3.16 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowThe graph partitioning framework KaHIP -- Karlsruhe High Quality Partitioning.
| -| [LAME](http://lame.sourceforge.net/) | 3.100 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | data |
ShowLAME is a high quality MPEG Audio Layer III (MP3) encoder licensed under the LGPL.
| -| [LAMMPS](https://www.lammps.org) | 29Aug2024 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | chem |
ShowLAMMPS is a classical molecular dynamics code, and an acronym for Large-scale Atomic/Molecular Massively Parallel Simulator. LAMMPS has potentials for solid-state materials (metals, semiconductors) and soft matter (biomolecules, polymers) and coarse-grained or mesoscopic systems. It can be used to model atoms or, more generically, as a parallel particle simulator at the atomic, meso, or continuum scale. LAMMPS runs on single processors or in parallel using message-passing techniques and a spatial-decomposition of the simulation domain. The code is designed to be easy to modify or extend with new functionality.
| -| [LERC](https://github.com/Esri/lerc) | 4.0.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowLERC is an open-source image or raster format which supports rapid encoding and decoding for any pixel type (not just RGB or Byte). Users set the maximum compression error per pixel while encoding, so the precision of the original input image is preserved (within user defined error bounds).
| -| [LLVM](https://llvm.org/) | 14.0.6 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | compiler |
ShowThe LLVM Core libraries provide a modern source- and target-independent optimizer, along with code generation support for many popular CPUs (as well as some less common ones!) These libraries are built around a well specified code representation known as the LLVM intermediate representation ("LLVM IR"). The LLVM Core libraries are well documented, and it is particularly easy to invent your own language (or port an existing compiler) to use LLVM as an optimizer and code generator. This version include patches for llvmlite / numba.
| -| [LLVM](https://llvm.org/) | 16.0.6 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | compiler |
ShowThe LLVM Core libraries provide a modern source- and target-independent optimizer, along with code generation support for many popular CPUs (as well as some less common ones!) These libraries are built around a well specified code representation known as the LLVM intermediate representation ("LLVM IR"). The LLVM Core libraries are well documented, and it is particularly easy to invent your own language (or port an existing compiler) to use LLVM as an optimizer and code generator.
| -| [LMDB](https://symas.com/lmdb) | 0.9.31 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowLMDB is a fast, memory-efficient database. With memory-mapped files, it has the read performance of a pure in-memory database while retaining the persistence of standard disk-based databases.
| -| [LibRaw](https://www.libraw.org/) | 0.21.3 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | vis |
ShowThe LibRaw library provides a simple and unified interface for extracting out of RAW files generated by digital photo cameras the following: - RAW data (pixel values) - Metadata necessary for processing RAW (geometry, CFA / Bayer pattern, black level, white balance, etc.) - Embedded preview / thumbnail.
| -| [LibTIFF](https://libtiff.gitlab.io/libtiff/) | 4.6.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
Showtiff: Library and tools for reading and writing TIFF data files
| -| [Libint](https://github.com/evaleev/libint) | 2.7.2 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | chem |
ShowLibint library is used to evaluate the traditional (electron repulsion) and certain novel two-body matrix elements (integrals) over Cartesian Gaussian functions used in modern atomic and molecular theory.
| -| [LinBox](https://linalg.org/) | 1.7.0 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowC++ library for exact, high-performance linear algebra
| -| [LittleCMS](https://www.littlecms.com/) | 2.15 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | vis |
ShowLittle CMS intends to be an OPEN SOURCE small-footprint color management engine, with special focus on accuracy and performance.
| -| [Lua](https://www.lua.org/) | 5.4.6 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lang |
ShowLua is a powerful, fast, lightweight, embeddable scripting language. Lua combines simple procedural syntax with powerful data description constructs based on associative arrays and extensible semantics. Lua is dynamically typed, runs by interpreting bytecode for a register-based virtual machine, and has automatic memory management with incremental garbage collection, making it ideal for configuration, scripting, and rapid prototyping.
| -| [M4](https://www.gnu.org/software/m4/m4.html) | 1.4.19 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | devel |
ShowGNU M4 is an implementation of the traditional Unix macro processor. It is mostly SVR4 compatible although it has some extensions (for example, handling more than 9 positional parameters to macros). GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, etc.
| -| [MAFFT](https://mafft.cbrc.jp/alignment/software/source.html) | 7.526 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | bio |
ShowMAFFT is a multiple sequence alignment program for unix-like operating systems. It offers a range of multiple alignment methods, L-INS-i (accurate; for alignment of <∼200 sequences), FFT-NS-2 (fast; for alignment of <∼30,000 sequences), etc.
| -| [MDI](https://github.com/MolSSI-MDI/MDI_Library) | 1.4.29 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | chem |
ShowThe MolSSI Driver Interface (MDI) project provides a standardized API for fast, on-the-fly communication between computational chemistry codes. This greatly simplifies the process of implementing methods that require the cooperation of multiple software packages and enables developers to write a single implementation that works across many different codes. The API is sufficiently general to support a wide variety of techniques, including QM/MM, ab initio MD, machine learning, advanced sampling, and path integral MD, while also being straightforwardly extensible. Communication between codes is handled by the MDI Library, which enables tight coupling between codes using either the MPI or TCP/IP methods.
| -| [METIS](https://karypis.github.io/glaros/projects/gp.html) | 5.1.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowMETIS is a set of serial programs for partitioning graphs, partitioning finite element meshes, and producing fill reducing orderings for sparse matrices. The algorithms implemented in METIS are based on the multilevel recursive-bisection, multilevel k-way, and multi-constraint partitioning schemes.
| -| [MPC](http://www.multiprecision.org/) | 1.3.1 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowGnu Mpc is a C library for the arithmetic of complex numbers with arbitrarily high precision and correct rounding of the result. It extends the principles of the IEEE-754 standard for fixed precision real floating point numbers to complex numbers, providing well-defined semantics for every operation. At the same time, speed of operation at high precision is a major design goal.
| -| [MPFI](https://perso.ens-lyon.fr/nathalie.revol/software.html) | 1.5.4 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowMPFI stands for Multiple Precision Floating-point Interval library.
| -| [MPFR](https://www.mpfr.org) | 4.2.1 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowThe MPFR library is a C library for multiple-precision floating-point computations with correct rounding.
| -| [MPICH](https://www.mpich.org/) | 4.2.2 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | mpi |
ShowMPICH is a high-performance and widely portable implementation of the Message Passing Interface (MPI) standard (MPI-1, MPI-2 and MPI-3).
| -| [MUMPS](https://mumps-solver.org) | 5.6.1 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowA parallel sparse direct solver
| -| [Mako](https://www.makotemplates.org) | 1.2.4 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | devel |
ShowA super-fast templating language that borrows the best ideas from the existing templating languages
| -| [Mesa](https://www.mesa3d.org/) | 23.1.9 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | vis |
ShowMesa is an open-source implementation of the OpenGL specification - a system for rendering interactive 3D graphics.
| -| [Meson](https://mesonbuild.com) | 1.2.3 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowMeson is a cross-platform build system designed to be both as fast and as user friendly as possible.
| -| [NASM](https://www.nasm.us/) | 2.16.01 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lang |
ShowNASM: General-purpose x86 assembler
| -| [NCCL](https://developer.nvidia.com/nccl) | 2.20.5 | NVIDIA Tesla | iris | lib |
ShowThe NVIDIA Collective Communications Library (NCCL) implements multi-GPU and multi-node collective communication primitives that are performance optimized for NVIDIA GPUs.
| -| [NLopt](http://ab-initio.mit.edu/wiki/index.php/NLopt) | 2.7.1 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | numlib |
ShowNLopt is a free/open-source library for nonlinear optimization, providing a common interface for a number of different free optimization routines available online as well as original implementations of various other algorithms.
| -| [NSPR](https://developer.mozilla.org/en-US/docs/Mozilla/Projects/NSPR) | 4.35 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowNetscape Portable Runtime (NSPR) provides a platform-neutral API for system level and libc-like functions.
| -| [NSS](https://developer.mozilla.org/en-US/docs/Mozilla/Projects/NSS) | 3.94 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowNetwork Security Services (NSS) is a set of libraries designed to support cross-platform development of security-enabled client and server applications.
| -| [NTL](https://shoup.net/ntl/) | 11.5.1 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowNTL is a high-performance, portable C++ library providing data structures and algorithms for manipulating signed, arbitrary length integers, and for vectors, matrices, and polynomials over the integers and over finite fields.
| -| [NVHPC](https://developer.nvidia.com/hpc-sdk/) | 24.11 | NVIDIA Tesla | iris | compiler |
ShowC, C++ and Fortran compilers included with the NVIDIA HPC SDK (previously: PGI)
| -| [Nextflow](https://www.nextflow.io/) | 24.10.2 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowNextflow is a reactive workflow framework and a programming DSL that eases writing computational pipelines with complex data
| -| [Ninja](https://ninja-build.org/) | 1.11.1 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowNinja is a small build system with a focus on speed.
| -| [Normaliz](https://www.normaliz.uni-osnabrueck.de/) | 3.10.3 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowNormaliz is a open source tool for computations in affine monoids, vector configurations, rational polyhedra and rational cones. Normaliz now computes rational and algebraic polyhedra, i.e., polyhedra defined over real algebraic extensions of QQ.
| -| [OCaml](http://ocaml.org/) | 5.1.1 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | lang |
ShowOCaml is a general purpose industrial-strength programming language with an emphasis on expressiveness and safety. Developed for more than 20 years at Inria it benefits from one of the most advanced type systems and supports functional, imperative and object-oriented styles of programming.
| -| [OPARI2](https://www.score-p.org) | 2.0.8 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | perf |
ShowOPARI2, the successor of Forschungszentrum Juelich's OPARI, is a source-to-source instrumentation tool for OpenMP and hybrid codes. It surrounds OpenMP directives and runtime library calls with calls to the POMP2 measurement interface.
| -| [OSU-Micro-Benchmarks](https://mvapich.cse.ohio-state.edu/benchmarks/) | 7.5 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake, NVIDIA Tesla | aion, iris | perf |
ShowOSU Micro-Benchmarks
| -| [OTF2](https://www.score-p.org) | 3.0.3 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | perf |
ShowThe Open Trace Format 2 is a highly scalable, memory efficient event trace data format plus support library. It is the new standard trace format for Scalasca, Vampir, and TAU and is open for other tools.
| -| [OpenBLAS](http://www.openblas.net/) | 0.3.24 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | numlib |
ShowOpenBLAS is an optimized BLAS library based on GotoBLAS2 1.13 BSD version.
| -| [OpenEXR](https://www.openexr.com/) | 3.2.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | vis |
ShowOpenEXR is a high dynamic-range (HDR) image file format developed by Industrial Light & Magic for use in computer imaging applications
| -| [OpenFOAM](https://www.openfoam.com/) | v2312 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | cae |
ShowOpenFOAM is a free, open source CFD software package. OpenFOAM has an extensive range of features to solve anything from complex fluid flows involving chemical reactions, turbulence and heat transfer, to solid dynamics and electromagnetics.
| -| [OpenJPEG](https://www.openjpeg.org/) | 2.5.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowOpenJPEG is an open-source JPEG 2000 codec written in C language. It has been developed in order to promote the use of JPEG 2000, a still-image compression standard from the Joint Photographic Experts Group (JPEG). Since may 2015, it is officially recognized by ISO/IEC and ITU-T as a JPEG 2000 Reference Software.
| -| [OpenMPI](https://www.open-mpi.org/) | 4.1.6 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | mpi |
ShowThe Open MPI Project is an open source MPI-3 implementation.
| -| [OpenPGM](https://code.google.com/p/openpgm/) | 5.2.122 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | system |
ShowOpenPGM is an open source implementation of the Pragmatic General Multicast (PGM) specification in RFC 3208 available at www.ietf.org. PGM is a reliable and scalable multicast protocol that enables receivers to detect loss, request retransmission of lost data, or notify an application of unrecoverable loss. PGM is a receiver-reliable protocol, which means the receiver is responsible for ensuring all data is received, absolving the sender of reception responsibility.
| -| [OpenSSL](https://www.openssl.org/) | 1.1
3 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | system |
ShowThe OpenSSL Project is a collaborative effort to develop a robust, commercial-grade, full-featured, and Open Source toolchain implementing the Secure Sockets Layer (SSL v2/v3) and Transport Layer Security (TLS v1) protocols as well as a full-strength general purpose cryptography library.
| -| [Osi](https://github.com/coin-or/Osi) | 0.108.9 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowOsi (Open Solver Interface) provides an abstract base class to a generic linear programming (LP) solver, along with derived classes for specific solvers. Many applications may be able to use the Osi to insulate themselves from a specific LP solver. That is, programs written to the OSI standard may be linked to any solver with an OSI interface and should produce correct results. The OSI has been significantly extended compared to its first incarnation. Currently, the OSI supports linear programming solvers and has rudimentary support for integer programming.
| -| [PAPI](https://icl.cs.utk.edu/projects/papi/) | 7.1.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | perf |
ShowPAPI provides the tool designer and application engineer with a consistent interface and methodology for use of the performance counter hardware found in most major microprocessors. PAPI enables software engineers to see, in near real time, the relation between software performance and processor events. In addition Component PAPI provides access to a collection of components that expose performance measurement opportunites across the hardware and software stack.
| -| [PARI-GP](https://pari.math.u-bordeaux.fr) | 2.15.5 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowPARI/GP is a widely used computer algebra system designed for fast computations in number theory (factorizations, algebraic number theory, elliptic curves...), but also contains a large number of other useful functions to compute with mathematical entities such as matrices, polynomials, power series, algebraic numbers etc., and a lot of transcendental functions. PARI is also available as a C library to allow for faster computations.
| -| [PCRE2](https://www.pcre.org/) | 10.42 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | devel |
ShowThe PCRE library is a set of functions that implement regular expression pattern matching using the same syntax and semantics as Perl 5.
| -| [PCRE](https://www.pcre.org/) | 8.45 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | devel |
ShowThe PCRE library is a set of functions that implement regular expression pattern matching using the same syntax and semantics as Perl 5.
| -| [PDT](https://www.cs.uoregon.edu/research/pdt/) | 3.25.2 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | perf |
ShowProgram Database Toolkit (PDT) is a framework for analyzing source code written in several programming languages and for making rich program knowledge accessible to developers of static and dynamic analysis tools. PDT implements a standard program representation, the program database (PDB), that can be accessed in a uniform way through a class library supporting common PDB operations.
| -| [PETSc](https://www.mcs.anl.gov/petsc) | 3.22.5 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | numlib |
ShowPETSc, pronounced PET-see (the S is silent), is a suite of data structures and routines for the scalable (parallel) solution of scientific applications modeled by partial differential equations.
| -| [PLUMED](https://www.plumed.org) | 2.9.2 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | chem |
ShowPLUMED is an open source library for free energy calculations in molecular systems which works together with some of the most popular molecular dynamics engines. Free energy calculations can be performed as a function of many order parameters with a particular focus on biological problems, using state of the art methods such as metadynamics, umbrella sampling and Jarzynski-equation based steered MD. The software, written in C++, can be easily interfaced with both fortran and C/C++ codes.
| -| [PMIx](https://pmix.org/) | 4.2.6 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowProcess Management for Exascale Environments PMI Exascale (PMIx) represents an attempt to provide an extended version of the PMI standard specifically designed to support clusters up to and including exascale sizes. The overall objective of the project is not to branch the existing pseudo-standard definitions - in fact, PMIx fully supports both of the existing PMI-1 and PMI-2 APIs - but rather to (a) augment and extend those APIs to eliminate some current restrictions that impact scalability, and (b) provide a reference implementation of the PMI-server that demonstrates the desired level of scalability.
| -| [PROJ](https://proj.org) | 9.3.1 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowProgram proj is a standard Unix filter function which converts geographic longitude and latitude coordinates into cartesian coordinates
| -| [Pandoc](https://pandoc.org) | 3.6.2 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowIf you need to convert files from one markup format into another, pandoc is your swiss-army knife
| -| [Pango](https://www.pango.org/) | 1.51.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | vis |
ShowPango is a library for laying out and rendering of text, with an emphasis on internationalization. Pango can be used anywhere that text layout is needed, though most of the work on Pango so far has been done in the context of the GTK+ widget toolkit. Pango forms the core of text and font handling for GTK+-2.x.
| -| [ParMETIS](https://karypis.github.io/glaros/projects/gp.html) | 4.0.3 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowParMETIS is an MPI-based parallel library that implements a variety of algorithms for partitioning unstructured graphs, meshes, and for computing fill-reducing orderings of sparse matrices. ParMETIS extends the functionality provided by METIS and includes routines that are especially suited for parallel AMR computations and large scale numerical simulations. The algorithms implemented in ParMETIS are based on the parallel multilevel k-way graph-partitioning, adaptive repartitioning, and parallel multi-constrained partitioning schemes.
| -| [ParaView](https://www.paraview.org) | 5.12.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | vis |
ShowParaView is a scientific parallel visualizer.
| -| [Parsl](https://parsl-project.org/) | 2024.4.22 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowParsl extends parallelism in Python beyond a single computer. You can use Parsl just like Python's parallel executors but across multiple cores and nodes. However, the real power of Parsl is in expressing multi-step workflows of functions. Parsl lets you chain functions together and will launch each function as inputs and computing resources are available.
| -| [Perl-bundle-CPAN](https://www.perl.org/) | 5.38.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lang |
ShowA set of common packages from CPAN
| -| [Perl](https://www.perl.org/) | 5.38.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lang |
ShowLarry Wall's Practical Extraction and Report Language Includes a small selection of extra CPAN packages for core functionality.
| -| [Pillow](https://pillow.readthedocs.org/) | 10.2.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | vis |
ShowPillow is the 'friendly PIL fork' by Alex Clark and Contributors. PIL is the Python Imaging Library by Fredrik Lundh and Contributors.
| -| [PostgreSQL](https://www.postgresql.org/) | 16.1 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | data |
ShowPostgreSQL is a powerful, open source object-relational database system. It is fully ACID compliant, has full support for foreign keys, joins, views, triggers, and stored procedures (in multiple languages). It includes most SQL:2008 data types, including INTEGER, NUMERIC, BOOLEAN, CHAR, VARCHAR, DATE, INTERVAL, and TIMESTAMP. It also supports storage of binary large objects, including pictures, sounds, or video. It has native programming interfaces for C/C++, Java, .Net, Perl, Python, Ruby, Tcl, ODBC, among others, and exceptional documentation.
| -| [PuLP](https://github.com/coin-or/pulp) | 2.8.0 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowPuLP is an LP modeler written in Python. PuLP can generate MPS or LP files and call GLPK, COIN-OR CLP/CBC, CPLEX, GUROBI, MOSEK, XPRESS, CHOCO, MIPCL, SCIP to solve linear problems.
| -| [PyHMMER](https://github.com/althonos/pyhmmer) | 0.10.15 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | bio |
ShowHMMER is a biological sequence analysis tool that uses profile hidden Markov models to search for sequence homologs. HMMER3 is developed and maintained by the Eddy/Rivas Laboratory at Harvard University. pyhmmer is a Python package, implemented using the Cython language, that provides bindings to HMMER3. It directly interacts with the HMMER internals, which has the following advantages over CLI wrappers (like hmmer-py)
| -| [PyTorch](https://pytorch.org/) | 2.3.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | ai |
ShowTensors and Dynamic neural networks in Python with strong GPU acceleration. PyTorch is a deep learning framework that puts Python first.
| -| [PyYAML](https://github.com/yaml/pyyaml) | 6.0.1 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowPyYAML is a YAML parser and emitter for the Python programming language.
| -| [PyZMQ](https://www.zeromq.org/bindings:python) | 25.1.2 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | devel |
ShowPython bindings for ZeroMQ
| -| [PycURL](http://pycurl.io/) | 7.45.3 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowPycURL is a Python interface to libcurl. PycURL can be used to fetch objects identified by a URL from a Python program, similar to the urllib Python module. PycURL is mature, very fast, and supports a lot of features.
| -| [Pysam](https://github.com/pysam-developers/pysam) | 0.22.0 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | bio |
ShowPysam is a python module for reading and manipulating Samfiles. It's a lightweight wrapper of the samtools C-API. Pysam also includes an interface for tabix.
| -| [Python-bundle-PyPI](https://python.org/) | 2023.10 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lang |
ShowBundle of Python packages from PyPI
| -| [Python](https://python.org/) | 3.11.5 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lang |
ShowPython is a programming language that lets you work more quickly and integrate your systems more effectively.
| -| [QIIME2](https://qiime2.org) | 2024.10.1 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | bio |
ShowQIIME 2 is a powerful, extensible, and decentralized microbiome bioinformatics platform that is free, open source, and community developed.
| -| [Qhull](http://www.qhull.org) | 2020.2 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowQhull computes the convex hull, Delaunay triangulation, Voronoi diagram, halfspace intersection about a point, furthest-site Delaunay triangulation, and furthest-site Voronoi diagram. The source code runs in 2-d, 3-d, 4-d, and higher dimensions. Qhull implements the Quickhull algorithm for computing the convex hull.
| -| [Qt5](https://qt.io/) | 5.15.13 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | devel |
ShowQt is a comprehensive cross-platform C++ application framework.
| -| [Qt6](https://qt.io/) | 6.6.3 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | devel |
ShowQt is a comprehensive cross-platform C++ application framework.
| -| [R-bundle-Bioconductor](https://bioconductor.org) | 3.19 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | bio |
ShowBioconductor provides tools for the analysis and coprehension of high-throughput genomic data.
| -| [R-bundle-CRAN](https://www.r-project.org/) | 2024.06 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lang |
ShowBundle of R packages from CRAN
| -| [RE2](https://github.com/google/re2) | 2024-03-01 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowRE2 is a fast, safe, thread-friendly alternative to backtracking regular expression engines like those used in PCRE, Perl, and Python. It is a C++ library.
| -| [R](https://www.r-project.org/) | 4.4.1 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lang |
ShowR is a free software environment for statistical computing and graphics.
| -| [RapidJSON](https://rapidjson.org) | 1.1.0-20240409 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowA fast JSON parser/generator for C++ with both SAX/DOM style API
| -| [ReFrame](https://github.com/reframe-hpc/reframe) | 4.7.4 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | devel |
ShowReFrame is a framework for writing regression tests for HPC systems.
| -| [Rust](https://www.rust-lang.org) | 1.73.0
1.76.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lang |
ShowRust is a systems programming language that runs blazingly fast, prevents segfaults, and guarantees thread safety.
| -| [SAMtools](https://www.htslib.org/) | 1.19.2 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | bio |
ShowSAM Tools provide various utilities for manipulating alignments in the SAM format, including sorting, merging, indexing and generating alignments in a per-position format.
| -| [SCOTCH](https://www.labri.fr/perso/pelegrin/scotch/) | 7.0.4 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowSoftware package and libraries for sequential and parallel graph partitioning, static mapping, and sparse matrix block ordering, and sequential mesh and hypergraph partitioning.
| -| [SDL2](https://www.libsdl.org/) | 2.28.5 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowSDL: Simple DirectMedia Layer, a cross-platform multimedia library
| -| [SIONlib](https://www.fz-juelich.de/ias/jsc/EN/Expertise/Support/Software/SIONlib/_node.html) | 1.7.7 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowSIONlib is a scalable I/O library for parallel access to task-local files. The library not only supports writing and reading binary data to or from several thousands of processors into a single or a small number of physical files, but also provides global open and close functions to access SIONlib files in parallel. This package provides a stripped-down installation of SIONlib for use with performance tools (e.g., Score-P), with renamed symbols to avoid conflicts when an application using SIONlib itself is linked against a tool requiring a different SIONlib version.
| -| [SLEPc](https://slepc.upv.es) | 3.22.2 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | numlib |
ShowSLEPc (Scalable Library for Eigenvalue Problem Computations) is a software library for the solution of large scale sparse eigenvalue problems on parallel computers. It is an extension of PETSc and can be used for either standard or generalized eigenproblems, with real or complex arithmetic. It can also be used for computing a partial SVD of a large, sparse, rectangular matrix, and to solve quadratic eigenvalue problems.
| -| [SQLAlchemy](https://www.sqlalchemy.org/) | 2.0.29 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowSQLAlchemy is the Python SQL toolkit and Object Relational Mapper that gives application developers the full power and flexibility of SQL. SQLAlchemy provides a full suite of well known enterprise-level persistence patterns, designed for efficient and high-performing database access, adapted into a simple and Pythonic domain language.
| -| [SQLite](https://www.sqlite.org/) | 3.43.1 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | devel |
ShowSQLite: SQL Database Engine in a C Library
| -| [SWIG](http://www.swig.org/) | 4.1.1 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | devel |
ShowSWIG is a software development tool that connects programs written in C and C++ with a variety of high-level programming languages.
| -| [SYMMETRICA](https://www.algorithm.uni-bayreuth.de/en/research/SYMMETRICA) | 2.0 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowSymmetrica is a Collection of C routines for representation theory.
| -| [Sagemath](https://doc.sagemath.org/html/en/index.html) | 10.4 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowSage is open source mathematical software released under the GNU General Public Licence GPLv2+, and includes packages that have compatible software licenses. People all around the globe have contributed to the development of Sage. Full documentation is available online.
| -| [ScaFaCoS](http://www.scafacos.de/) | 1.0.4 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowScaFaCoS is a library of scalable fast coulomb solvers.
| -| [ScaLAPACK](https://www.netlib.org/scalapack/) | 2.2.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | numlib |
ShowThe ScaLAPACK (or Scalable LAPACK) library includes a subset of LAPACK routines redesigned for distributed memory MIMD parallel computers.
| -| [Scalasca](https://www.scalasca.org/) | 2.6.1 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | perf |
ShowScalasca is a software tool that supports the performance optimization of parallel programs by measuring and analyzing their runtime behavior. The analysis identifies potential performance bottlenecks -- in particular those concerning communication and synchronization -- and offers guidance in exploring their causes.
| -| [SciPy-bundle](https://python.org/) | 2023.11 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lang |
ShowBundle of Python packages for scientific software
| -| [Score-P](https://www.score-p.org) | 8.4 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | perf |
ShowThe Score-P measurement infrastructure is a highly scalable and easy-to-use tool suite for profiling, event tracing, and online analysis of HPC applications.
| -| [Seaborn](https://seaborn.pydata.org/) | 0.13.2 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | bio |
ShowSeaborn is a Python visualization library based on matplotlib. It provides a high-level interface for drawing attractive statistical graphics.
| -| [SharedMeatAxe](https://github.com/simon-king-jena/SharedMeatAxe) | 1.0.1 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowThis is an autotoolized shared library version of C MeatAxe 2.4.24, a set of programs for computing with modular representations.
| -| [Singular](https://www.singular.uni-kl.de/) | 4.4.0 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowSingular is a computer algebra system for polynomial computations, with special emphasis on commutative and non-commutative algebra, algebraic geometry, and singularity theory.
| -| [Spack](https://spack.io/) | 0.21.2 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | devel |
ShowSpack is a package manager for supercomputers, Linux, and macOS. It makes installing scientific software easy. With Spack, you can build a package with multiple versions, configurations, platforms, and compilers, and all of these builds can coexist on the same machine.
| -| [Spark](https://spark.apache.org) | 3.5.4 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | devel |
ShowSpark is Hadoop MapReduce done in memory
| -| [SuiteSparse](https://faculty.cse.tamu.edu/davis/suitesparse.html) | 7.7.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | numlib |
ShowSuiteSparse is a collection of libraries to manipulate sparse matrices.
| -| [SuperLU_DIST](https://crd-legacy.lbl.gov/~xiaoye/SuperLU/) | 8.2.1 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | numlib |
ShowSuperLU is a general purpose library for the direct solution of large, sparse, nonsymmetric systems of linear equations on high performance machines.
| -| [Szip](https://support.hdfgroup.org/doc_resource/SZIP/) | 2.1.1 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowSzip compression software, providing lossless compression of scientific data
| -| [Tcl](https://www.tcl.tk/) | 8.6.13 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lang |
ShowTcl (Tool Command Language) is a very powerful but easy to learn dynamic programming language, suitable for a very wide range of uses, including web and desktop applications, networking, administration, testing and many more.
| -| [Tk](https://www.tcl.tk/) | 8.6.13 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | vis |
ShowTk is an open source, cross-platform widget toolchain that provides a library of basic elements for building a graphical user interface (GUI) in many different programming languages.
| -| [Tkinter](https://python.org/) | 3.11.5 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lang |
ShowTkinter module, built with the Python buildsystem
| -| [UCC-CUDA](https://www.openucx.org/) | 1.2.0 | NVIDIA Tesla | iris | lib |
ShowUCC (Unified Collective Communication) is a collective communication operations API and library that is flexible, complete, and feature-rich for current and emerging programming models and runtimes. This module adds the UCC CUDA support.
| -| [UCC](https://www.openucx.org/) | 1.2.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowUCC (Unified Collective Communication) is a collective communication operations API and library that is flexible, complete, and feature-rich for current and emerging programming models and runtimes.
| -| [UCX-CUDA](http://www.openucx.org/) | 1.15.0 | NVIDIA Tesla | iris | lib |
ShowUnified Communication X An open-source production grade communication framework for data centric and high-performance applications This module adds the UCX CUDA support.
| -| [UCX](https://www.openucx.org/) | 1.15.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowUnified Communication X An open-source production grade communication framework for data centric and high-performance applications
| -| [UDUNITS](https://www.unidata.ucar.edu/software/udunits/) | 2.2.28 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | phys |
ShowUDUNITS supports conversion of unit specifications between formatted and binary forms, arithmetic manipulation of units, and conversion of values between compatible scales of measurement.
| -| [UnZip](http://www.info-zip.org/UnZip.html) | 6.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowUnZip is an extraction utility for archives compressed in .zip format (also called "zipfiles"). Although highly compatible both with PKWARE's PKZIP and PKUNZIP utilities for MS-DOS and with Info-ZIP's own Zip program, our primary objectives have been portability and non-MSDOS functionality.
| -| [UniFrac](https://github.com/biocore/unifrac-binaries) | 1.4 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | bio |
ShowUniFrac is the de facto repository for high-performance phylogenetic diversity calculations. The methods in this repository are based on an implementation of the Strided State UniFrac algorithm which is faster, and uses less memory than Fast UniFrac. Strided State UniFrac supports Unweighted UniFrac, Weighted UniFrac, Generalized UniFrac, Variance Adjusted UniFrac and meta UniFrac, in both double and single precision (fp32). This repository also includes Stacked Faith (manuscript in preparation), a method for calculating Faith's PD that is faster and uses less memory than the Fast UniFrac-based reference implementation.
| -| [VSEARCH](https://github.com/torognes/vsearch) | 2.30.0 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | bio |
ShowVSEARCH supports de novo and reference based chimera detection, clustering, full-length and prefix dereplication, rereplication, reverse complementation, masking, all-vs-all pairwise global alignment, exact and global alignment searching, shuffling, subsampling and sorting. It also supports FASTQ file analysis, filtering, conversion and merging of paired-end reads.
| -| [VTK](https://www.vtk.org) | 9.3.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | vis |
ShowThe Visualization Toolkit (VTK) is an open-source, freely available software system for 3D computer graphics, image processing and visualization. VTK consists of a C++ class library and several interpreted interface layers including Tcl/Tk, Java, and Python. VTK supports a wide variety of visualization algorithms including: scalar, vector, tensor, texture, and volumetric methods; and advanced modeling techniques such as: implicit modeling, polygon reduction, mesh smoothing, cutting, contouring, and Delaunay triangulation.
| -| [Valgrind](https://valgrind.org) | 3.23.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | debugger |
ShowValgrind: Debugging and profiling tools
| -| [Voro++](http://math.lbl.gov/voro++/) | 0.4.6 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowVoro++ is a software library for carrying out three-dimensional computations of the Voronoi tessellation. A distinguishing feature of the Voro++ library is that it carries out cell-based calculations, computing the Voronoi cell for each particle individually. It is particularly well-suited for applications that rely on cell-based statistics, where features of Voronoi cells (eg. volume, centroid, number of faces) can be used to analyze a system of particles.
| -| [Wayland](https://wayland.freedesktop.org/) | 1.22.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | vis |
ShowWayland is a project to define a protocol for a compositor to talk to its clients as well as a library implementation of the protocol. The compositor can be a standalone display server running on Linux kernel modesetting and evdev input devices, an X application, or a wayland client itself. The clients can be traditional applications, X servers (rootless or fullscreen) or other display servers.
| -| [X11](https://www.x.org) | 20231019 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | vis |
ShowThe X Window System (X11) is a windowing system for bitmap displays
| -| [XZ](https://tukaani.org/xz/) | 5.4.4 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
Showxz: XZ utilities
| -| [Xerces-C++](https://xerces.apache.org/xerces-c/) | 3.2.5 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowXerces-C++ is a validating XML parser written in a portable subset of C++. Xerces-C++ makes it easy to give your application the ability to read and write XML data. A shared library is provided for parsing, generating, manipulating, and validating XML documents using the DOM, SAX, and SAX2 APIs.
| -| [Xvfb](https://www.x.org/releases/X11R7.6/doc/man/man1/Xvfb.1.xhtml) | 21.1.9 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | vis |
ShowXvfb is an X server that can run on machines with no display hardware and no physical input devices. It emulates a dumb framebuffer using virtual memory.
| -| [Yasm](https://www.tortall.net/projects/yasm/) | 1.3.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lang |
ShowYasm: Complete rewrite of the NASM assembler with BSD license
| -| [Z3](https://github.com/Z3Prover/z3) | 4.13.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowZ3 is a theorem prover from Microsoft Research with support for bitvectors, booleans, arrays, floating point numbers, strings, and other data types. This module includes z3-solver, the Python interface of Z3.
| -| [ZeroMQ](https://www.zeromq.org/) | 4.3.5 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | devel |
ShowZeroMQ looks like an embeddable networking library but acts like a concurrency framework. It gives you sockets that carry atomic messages across various transports like in-process, inter-process, TCP, and multicast. You can connect sockets N-to-N with patterns like fanout, pub-sub, task distribution, and request-reply. It's fast enough to be the fabric for clustered products. Its asynchronous I/O model gives you scalable multicore applications, built as asynchronous message-processing tasks. It has a score of language APIs and runs on most operating systems.
| -| [aiohttp](https://github.com/aio-libs/aiohttp) | 3.9.5 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowAsynchronous HTTP client/server framework for asyncio and Python.
| -| [alsa-lib](https://www.alsa-project.org) | 1.2.11 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowThe Advanced Linux Sound Architecture (ALSA) provides audio and MIDI functionality to the Linux operating system.
| -| [archspec](https://github.com/archspec/archspec) | 0.2.2 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowA library for detecting, labeling, and reasoning about microarchitectures
| -| [arpack-ng](https://github.com/opencollab/arpack-ng) | 3.9.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | numlib |
ShowARPACK is a collection of Fortran77 subroutines designed to solve large scale eigenvalue problems.
| -| [arrow-R](https://cran.r-project.org/web/packages/arrow) | 16.1.0 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowR interface to the Apache Arrow C++ library
| -| [assimp](https://github.com/assimp/assimp) | 5.3.1 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | vis |
ShowOpen Asset Import Library (assimp) is a library to import and export various 3d-model-formats including scene-post-processing to generate missing render data.
| -| [at-spi2-atk](https://wiki.gnome.org/Accessibility) | 2.38.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | vis |
ShowAT-SPI 2 toolkit bridge
| -| [at-spi2-core](https://wiki.gnome.org/Accessibility) | 2.50.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | vis |
ShowAssistive Technology Service Provider Interface.
| -| [attr](https://savannah.nongnu.org/projects/attr) | 2.5.2 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowCommands for Manipulating Filesystem Extended Attributes
| -| [bcrypt](https://github.com/pyca/bcrypt/) | 4.1.3 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowAcceptable password hashing for your software and your servers (but you should really use argon2id or scrypt)
| -| [binutils](https://directory.fsf.org/project/binutils/) | 2.40 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
Showbinutils: GNU binary utilities
| -| [biom-format](https://biom-format.org) | 2.1.16 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | bio |
ShowThe BIOM file format (canonically pronounced biome) is designed to be a general-use format for representing biological sample by observation contingency tables. BIOM is a recognized standard for the Earth Microbiome Project and is a Genomics Standards Consortium supported project.
| -| [bliss](https://users.aalto.fi/~tjunttil/bliss/) | 0.77 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowBliss is an open-source tool for computing canonical labelings and automorphism groups of graphs.
| -| [bokeh](https://github.com/bokeh/bokeh) | 3.4.1 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowStatistical and novel interactive HTML plots for Python
| -| [bzip2](https://sourceware.org/bzip2) | 1.0.8 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
Showbzip2 is a freely available, patent free, high-quality data compressor. It typically compresses files to within 10% to 15% of the best available techniques (the PPM family of statistical compressors), whilst being around twice as fast at compression and six times faster at decompression.
| -| [cURL](https://curl.haxx.se) | 8.3.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
Showlibcurl is a free and easy-to-use client-side URL transfer library, supporting DICT, FILE, FTP, FTPS, Gopher, HTTP, HTTPS, IMAP, IMAPS, LDAP, LDAPS, POP3, POP3S, RTMP, RTSP, SCP, SFTP, SMTP, SMTPS, Telnet and TFTP. libcurl supports SSL certificates, HTTP POST, HTTP PUT, FTP uploading, HTTP form based upload, proxies, cookies, user+password authentication (Basic, Digest, NTLM, Negotiate, Kerberos), file transfer resume, http proxy tunneling and more.
| -| [cairo](https://cairographics.org) | 1.18.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | vis |
ShowCairo is a 2D graphics library with support for multiple output devices. Currently supported output targets include the X Window System (via both Xlib and XCB), Quartz, Win32, image buffers, PostScript, PDF, and SVG file output. Experimental backends include OpenGL, BeOS, OS/2, and DirectFB
| -| [cddlib](https://github.com/cddlib/cddlib) | 0.94m | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowAn efficient implementation of the Double Description Method
| -| [cffi](https://cffi.readthedocs.io/en/latest/) | 1.15.1 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowC Foreign Function Interface for Python. Interact with almost any C code from Python, based on C-like declarations that you can often copy-paste from header files or documentation.
| -| [cliquer](https://users.aalto.fi/~pat/cliquer.html) | 1.21 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowCliquer is a set of C routines for finding cliques in an arbitrary weighted graph. It uses an exact branch-and-bound algorithm developed by Patric Ostergard. It is designed with the aim of being efficient while still being flexible and easy to use.
| -| [configurable-http-proxy](https://github.com/jupyterhub/configurable-http-proxy) | 4.6.1 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowHTTP proxy for node.js including a REST API for updating the routing table. Developed as a part of the Jupyter Hub multi-user server.
| -| [coverage](https://coverage.readthedocs.io) | 7.4.4 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowCoverage.py is a tool for measuring code coverage of Python programs. It monitors your program, noting which parts of the code have been executed, then analyzes the source to identify code that could have been executed but was not.
| -| [coxeter](https://github.com/tscrim/coxeter) | 20180226 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowA library for the study of combinatorial aspects of Coxeter group theory
| -| [cpio](https://savannah.gnu.org/projects/cpio/) | 2.15 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowThe cpio package contains tools for archiving.
| -| [cppy](https://github.com/nucleic/cppy) | 1.2.1 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowA small C++ header library which makes it easier to write Python extension modules. The primary feature is a PyObject smart pointer which automatically handles reference counting and provides convenience methods for performing common object operations.
| -| [cppyy](https://cppyy.readthedocs.io) | 3.1.2 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | lang |
Showcppyy is an automatic, run-time, Python-C++ bindings generator, for calling C++ from Python and Python from C++.
| -| [cryptography](https://github.com/pyca/cryptography) | 41.0.5 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
Showcryptography is a package designed to expose cryptographic primitives and recipes to Python developers.
| -| [cutadapt](https://opensource.scilifelab.se/projects/cutadapt/) | 5.0 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | bio |
ShowCutadapt finds and removes adapter sequences, primers, poly-A tails and other types of unwanted sequence from your high-throughput sequencing reads.
| -| [cysignals](https://pypi.org/project/cysignals/) | 1.11.4 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | lang |
ShowThe cysignals package provides mechanisms to handle interrupts (and other signals and errors) in Cython code.
| -| [debugpy](https://aka.ms/debugpy) | 1.8.1 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | debugger |
ShowAn implementation of the Debug Adapter Protocol for Python
| -| [deprecation](http://deprecation.readthedocs.io) | 2.1.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowThe deprecation library provides a deprecated decorator and a fail_if_not_removed decorator for your tests.
| -| [dill](https://pypi.org/project/dill/) | 0.3.8 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | data |
Showdill extends python's pickle module for serializing and de-serializing python objects to the majority of the built-in python types. Serialization is the process of converting an object to a byte stream, and the inverse of which is converting a byte stream back to on python object hierarchy.
| -| [double-conversion](https://github.com/google/double-conversion) | 3.3.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowEfficient binary-decimal and decimal-binary conversion routines for IEEE doubles.
| -| [eclib](https://github.com/JohnCremona/eclib) | 20240408 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowThe eclib package includes mwrank (for 2-descent on elliptic curves over Q) and modular symbol code used to create the elliptic curve database.
| -| [expat](https://libexpat.github.io) | 2.5.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowExpat is an XML parser library written in C. It is a stream-oriented parser in which an application registers handlers for things the parser might find in the XML document (like start tags).
| -| [expecttest](https://github.com/ezyang/expecttest) | 0.2.1 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowThis library implements expect tests (also known as "golden" tests). Expect tests are a method of writing tests where instead of hard-coding the expected output of a test, you run the test to get the output, and the test framework automatically populates the expected output. If the output of the test changes, you can rerun the test with the environment variable EXPECTTEST_ACCEPT=1 to automatically update the expected output.
| -| [ffnvcodec](https://git.videolan.org/?p=ffmpeg/nv-codec-headers.git) | 12.1.14.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowFFmpeg nvidia headers. Adds support for nvenc and nvdec. Requires Nvidia GPU and drivers to be present (picked up dynamically).
| -| [flex](http://flex.sourceforge.net/) | 2.6.4 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lang |
ShowFlex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner, sometimes called a tokenizer, is a program which recognizes lexical patterns in text.
| -| [flex](https://github.com/westes/flex) | 2.6.4 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lang |
ShowFlex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner, sometimes called a tokenizer, is a program which recognizes lexical patterns in text.
| -| [flit](https://github.com/pypa/flit) | 3.9.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowA simple packaging tool for simple packages.
| -| [fontconfig](https://www.freedesktop.org/wiki/Software/fontconfig/) | 2.14.2 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | vis |
ShowFontconfig is a library designed to provide system-wide font configuration, customization and application access.
| -| [foss](https://docs.easybuild.io/common-toolchains/#common_toolchains_foss) | 2023b | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | toolchain |
ShowGNU Compiler Collection (GCC) based compiler toolchain, including OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK.
| -| [fplll](https://github.com/fplll/fplll) | 5.4.5 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
Showfplll contains implementations of several lattice algorithms. The implementation relies on floating-point orthogonalization, and the 1982 paper from Lenstra, Lenstra Jr. and Lovasz (LLL) is central to the code, hence the name.
| -| [fpylll](https://pypi.org/project/fpylll) | 0.6.1 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowA Python wrapper for fplll.
| -| [freetype](https://www.freetype.org) | 2.13.2 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | vis |
ShowFreeType 2 is a software font engine that is designed to be small, efficient, highly customizable, and portable while capable of producing high-quality output (glyph images). It can be used in graphics libraries, display servers, font conversion tools, text image generation tools, and many other products as well.
| -| [gap](https://www.gap-system.org) | 4.13.0 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowGAP is a system for computational discrete algebra, with particular emphasis on Computational Group Theory.
| -| [gc](https://hboehm.info/gc/) | 8.2.6 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowThe Boehm-Demers-Weiser conservative garbage collector can be used as a garbage collecting replacement for C malloc or C++ new.
| -| [gengetopt](https://www.gnu.org/software/gengetopt/gengetopt.html) | 2.23 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowGengetopt is a tool to write command line option parsing code for C programs.
| -| [gettext](https://www.gnu.org/software/gettext/) | 0.22 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowGNU 'gettext' is an important step for the GNU Translation Project, as it is an asset on which we may build many other steps. This package offers to programmers, translators, and even users, a well integrated set of tools and documentation
| -| [gfbf]((none)) | 2023b | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | toolchain |
ShowGNU Compiler Collection (GCC) based compiler toolchain, including FlexiBLAS (BLAS and LAPACK support) and (serial) FFTW.
| -| [gffutils](https://github.com/daler/gffutils) | 0.13 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | bio |
ShowGffutils is a Python package for working with and manipulating the GFF and GTF format files typically used for genomic annotations.
| -| [giac](https://www-fourier.ujf-grenoble.fr/~parisse/giac.html) | 1.9.0-99 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowGiac is a C++ library, it is the CAS computing kernel. It may be used inside other C++ programs, and also Python, Java and Javascript programs.
| -| [giflib](http://giflib.sourceforge.net/) | 5.2.1 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
Showgiflib is a library for reading and writing gif images. It is API and ABI compatible with libungif which was in wide use while the LZW compression algorithm was patented.
| -| [git](https://git-scm.com) | 2.42.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowGit is a free and open source distributed version control system designed to handle everything from small to very large projects with speed and efficiency.
| -| [gmpy2](https://github.com/aleaxit/gmpy) | 2.1.5 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowGMP/MPIR, MPFR, and MPC interface to Python 2.6+ and 3.x
| -| [gmsh](https://gmsh.info/) | 4.12.2 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowGmsh is a 3D finite element grid generator with a build-in CAD engine and post-processor.
| -| [gnupg-bundle](https://www.gnupg.org/software/index.html) | 20240306 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | system |
ShowGnuPG — The Universal Crypto Engine
| -| [gnuplot](http://gnuplot.sourceforge.net) | 6.0.1 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | vis |
ShowPortable interactive, function plotting utility
| -| [gocryptfs](https://nuetzlich.net/gocryptfs/) | 2.5.4 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowAn encrypted overlay filesystem written in Go and built on top the go-fuse FUSE library.
| -| [gompi]((none)) | 2023b | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | toolchain |
ShowGNU Compiler Collection (GCC) based compiler toolchain, including OpenMPI for MPI support.
| -| [googletest](https://github.com/google/googletest) | 1.14.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowGoogle's framework for writing C++ tests on a variety of platforms
| -| [gperf](https://www.gnu.org/software/gperf/) | 3.1 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | devel |
ShowGNU gperf is a perfect hash function generator. For a given list of strings, it produces a hash function and hash table, in form of C or C++ code, for looking up a value depending on the input string. The hash function is perfect, which means that the hash table has no collisions, and the hash table lookup needs a single string comparison only.
| -| [graphite2](https://scripts.sil.org/cms/scripts/page.php?site_id=projects&item_id=graphite_home) | 1.3.14 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowGraphite is a "smart font" system developed specifically to handle the complexities of lesser-known languages of the world.
| -| [groff](https://www.gnu.org/software/groff) | 1.23.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowGroff (GNU troff) is a typesetting system that reads plain text mixed with formatting commands and produces formatted output.
| -| [gzip](https://www.gnu.org/software/gzip/) | 1.13 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
Showgzip (GNU zip) is a popular data compression program as a replacement for compress
| -| [h5py](https://www.h5py.org/) | 3.11.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | data |
ShowHDF5 for Python (h5py) is a general-purpose Python interface to the Hierarchical Data Format library, version 5. HDF5 is a versatile, mature scientific software library designed for the fast, flexible storage of enormous amounts of data.
| -| [hatch-jupyter-builder](https://hatch-jupyter-builder.readthedocs.io) | 0.9.1 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowHatch Jupyter Builder is a plugin for the hatchling Python build backend. It is primarily targeted for package authors who are providing JavaScript as part of their Python packages. Typical use cases are Jupyter Lab Extensions and Jupyter Widgets.
| -| [hatchling](https://hatch.pypa.io) | 1.18.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowExtensible, standards compliant build backend used by Hatch, a modern, extensible Python project manager.
| -| [help2man](https://www.gnu.org/software/help2man/) | 1.49.3 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
Showhelp2man produces simple manual pages from the '--help' and '--version' output of other commands.
| -| [hevea](http://pauillac.inria.fr/~maranget/hevea/) | 2.36 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | devel |
ShowA quite complete and fast LATEX to HTML translator
| -| [hwloc](https://www.open-mpi.org/projects/hwloc/) | 2.9.2 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | system |
ShowThe Portable Hardware Locality (hwloc) software package provides a portable abstraction (across OS, versions, architectures, ...) of the hierarchical topology of modern architectures, including NUMA memory nodes, sockets, shared caches, cores and simultaneous multithreading. It also gathers various system attributes such as cache and memory information as well as the locality of I/O devices such as network interfaces, InfiniBand HCAs or GPUs. It primarily aims at helping applications with gathering information about modern computing hardware so as to exploit it accordingly and efficiently.
| -| [hypothesis](https://github.com/HypothesisWorks/hypothesis) | 6.90.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowHypothesis is an advanced testing library for Python. It lets you write tests which are parametrized by a source of examples, and then generates simple and comprehensible examples that make your tests fail. This lets you find more bugs in your code with less work.
| -| [igraph](https://igraph.org) | 0.10.12 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
Showigraph is a collection of network analysis tools with the emphasis on efficiency, portability and ease of use. igraph is open source and free. igraph can be programmed in R, Python and C/C++.
| -| [iimpi](https://software.intel.com/parallel-studio-xe) | 2023b | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | toolchain |
ShowIntel C/C++ and Fortran compilers, alongside Intel MPI.
| -| [imkl-FFTW](https://software.intel.com/content/www/us/en/develop/tools/oneapi/components/onemkl.html) | 2023.2.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | numlib |
ShowFFTW interfaces using Intel oneAPI Math Kernel Library
| -| [imkl](https://software.intel.com/content/www/us/en/develop/tools/oneapi/components/onemkl.html) | 2023.2.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | numlib |
ShowIntel oneAPI Math Kernel Library
| -| [impi](https://software.intel.com/content/www/us/en/develop/tools/mpi-library.html) | 2021.10.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | mpi |
ShowIntel MPI Library, compatible with MPICH ABI
| -| [intel-compilers](https://software.intel.com/content/www/us/en/develop/tools/oneapi/hpc-toolkit.html) | 2023.2.1 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | compiler |
ShowIntel C, C++ & Fortran compilers (classic and oneAPI)
| -| [intel](https://docs.easybuild.io/common-toolchains/#common_toolchains_overview_intel) | 2023b | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | toolchain |
ShowCompiler toolchain including Intel compilers, Intel MPI and Intel Math Kernel Library (MKL).
| -| [intltool](https://freedesktop.org/wiki/Software/intltool/) | 0.51.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | devel |
Showintltool is a set of tools to centralize translation of many different file formats using GNU gettext-compatible PO files.
| -| [ipywidgets](https://jupyter.org/) | 8.1.2 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowJupyter Widgets are interactive browser controls for Jupyter notebooks
| -| [jbigkit](https://www.cl.cam.ac.uk/~mgk25/jbigkit/) | 2.1 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | vis |
ShowJBIG-KIT is a software implementation of the JBIG1 data compression standard (ITU-T T.82), which was designed for bi-level image data, such as scanned documents.
| -| [jedi](https://github.com/davidhalter/jedi) | 0.19.1 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowJedi - an awesome autocompletion, static analysis and refactoring library for Python. It is typically used in IDEs/editors plugins. Jedi has a focus on autocompletion and goto functionality. Other features include refactoring, code search and finding references.
| -| [json-c](https://github.com/json-c/json-c) | 0.17 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowJSON-C implements a reference counting object model that allows you to easily construct JSON objects in C, output them as JSON formatted strings and parse JSON formatted strings back into the C representation of JSON objects.
| -| [jupyter-resource-usage](https://github.com/jupyter-server/jupyter-resource-usage) | 1.0.2 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowJupyter Notebook Extension for monitoring your own Resource Usage (memory and/or CPU)
| -| [jupyter-server-proxy](https://github.com/jupyterhub/jupyter-server-proxy) | 4.1.2 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowJupyter Server Proxy lets you run arbitrary external processes (such as RStudio, Shiny Server, Syncthing, PostgreSQL, Code Server, etc) alongside your notebook server and provide authenticated web access to them using a path like /rstudio next to others like /lab. Alongside the python package that provides the main functionality, the JupyterLab extension (@jupyterlab/server-proxy) provides buttons in the JupyterLab launcher window to get to RStudio for example.
| -| [jupyter-server](https://jupyter.org/) | 2.14.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowThe Jupyter Server provides the backend (i.e. the core services, APIs, and REST endpoints) for Jupyter web applications like Jupyter notebook, JupyterLab, and Voila.
| -| [jupyter_packaging](http://jupyter.org/) | 0.12.3 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowTools to help build and install Jupyter Python packages that require a pre-build step that may include JavaScript build steps.
| -| [jupyterlmod](https://github.com/cmd-ntrf/jupyter-lmod) | 5.2.1 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowJupyter interactive notebook server extension that allows users to interact with environment modules before launching kernels. The extension uses Lmod's Python interface to accomplish module-related tasks like loading, unloading, saving collections, etc.
| -| [jxrlib](https://github.com/4creators/jxrlib) | 1.1 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowOpen source implementation of jpegxr
| -| [kim-api](https://openkim.org/) | 2.3.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | chem |
ShowOpen Knowledgebase of Interatomic Models. KIM is an API and OpenKIM is a collection of interatomic models (potentials) for atomistic simulations. This is a library that can be used by simulation programs to get access to the models in the OpenKIM database. This EasyBuild only installs the API, the models can be installed with the package openkim-models, or the user can install them manually by running kim-api-collections-management install user MODELNAME or kim-api-collections-management install user OpenKIM to install them all.
| -| [lcalc](https://gitlab.com/sagemath/lcalc) | 2.0.5 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowLcalc is a package for working with L-functions.
| -| [libGLU](https://gitlab.freedesktop.org/mesa/glu) | 9.0.3 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | vis |
ShowThe OpenGL Utility Library (GLU) is a computer graphics library for OpenGL.
| -| [libaec](https://gitlab.dkrz.de/k202009/libaec) | 1.0.6 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowLibaec provides fast lossless compression of 1 up to 32 bit wide signed or unsigned integers (samples). The library achieves best results for low entropy data as often encountered in space imaging instrument data or numerical model output from weather or climate simulations. While floating point representations are not directly supported, they can also be efficiently coded by grouping exponents and mantissa.
| -| [libarchive](https://www.libarchive.org/) | 3.7.2 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowMulti-format archive and compression library
| -| [libbraiding](https://github.com/miguelmarco/libbraiding) | 1.2 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowThis is a project to expose the functionalitis of the Braiding program as a shared library. The original goal is to include it as a component of SageMath, but it can be used in any other c++ program.
| -| [libcerf](https://jugit.fz-juelich.de/mlz/libcerf) | 2.4 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
Showlibcerf is a self-contained numeric library that provides an efficient and accurate implementation of complex error functions, along with Dawson, Faddeeva, and Voigt functions.
| -| [libde265](https://github.com/strukturag/libde265) | 1.0.15 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
Showlibde265 is an open source implementation of the h.265 video codec
| -| [libdeflate](https://github.com/ebiggers/libdeflate) | 1.19 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | system |
ShowHeavily optimized library for DEFLATE/zlib/gzip compression and decompression.
| -| [libdrm](https://dri.freedesktop.org) | 2.4.117 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowDirect Rendering Manager runtime library.
| -| [libepoxy](https://github.com/anholt/libepoxy) | 1.5.10 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowEpoxy is a library for handling OpenGL function pointer management for you
| -| [libevent](https://libevent.org/) | 2.1.12 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowThe libevent API provides a mechanism to execute a callback function when a specific event occurs on a file descriptor or after a timeout has been reached. Furthermore, libevent also support callbacks due to signals or regular timeouts.
| -| [libfabric](https://ofiwg.github.io/libfabric/) | 1.19.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowLibfabric is a core component of OFI. It is the library that defines and exports the user-space API of OFI, and is typically the only software that applications deal with directly. It works in conjunction with provider libraries, which are often integrated directly into libfabric.
| -| [libffi](https://sourceware.org/libffi/) | 3.4.4 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowThe libffi library provides a portable, high level programming interface to various calling conventions. This allows a programmer to call any function specified by a call interface description at run-time.
| -| [libgd](https://libgd.github.io) | 2.3.3 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowGD is an open source code library for the dynamic creation of images by programmers.
| -| [libgeotiff](https://directory.fsf.org/wiki/Libgeotiff) | 1.7.3 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowLibrary for reading and writing coordinate system information from/to GeoTIFF files
| -| [libgit2](https://libgit2.org/) | 1.7.2 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | devel |
Showlibgit2 is a portable, pure C implementation of the Git core methods provided as a re-entrant linkable library with a solid API, allowing you to write native speed custom Git applications in any language which supports C bindings.
| -| [libglvnd](https://gitlab.freedesktop.org/glvnd/libglvnd) | 1.7.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
Showlibglvnd is a vendor-neutral dispatch layer for arbitrating OpenGL API calls between multiple vendors.
| -| [libheif](https://github.com/strukturag/libheif) | 1.19.5 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
Showlibheif is an HEIF and AVIF file format decoder and encoder
| -| [libhomfly](https://github.com/miguelmarco/libhomfly) | 1.02r6 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowThis is basically a conversion of the program written by Robert J Jenkins Jr into a shared library. It accepts as entry a character string, formatted in the same way as the input files that the original code used (see below). The returned value is the string that the original program would print on screen.
| -| [libiconv](https://www.gnu.org/software/libiconv) | 1.17 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowLibiconv converts from one character encoding to another through Unicode conversion
| -| [libjpeg-turbo](https://sourceforge.net/projects/libjpeg-turbo/) | 3.0.1 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
Showlibjpeg-turbo is a fork of the original IJG libjpeg which uses SIMD to accelerate baseline JPEG compression and decompression. libjpeg is a library that implements JPEG image encoding, decoding and transcoding.
| -| [libogg](https://xiph.org/ogg/) | 1.3.5 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowOgg is a multimedia container format, and the native file and stream format for the Xiph.org multimedia codecs.
| -| [libopus](https://www.opus-codec.org/) | 1.5.2 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowOpus is a totally open, royalty-free, highly versatile audio codec. Opus is unmatched for interactive speech and music transmission over the Internet, but is also intended for storage and streaming applications. It is standardized by the Internet Engineering Task Force (IETF) as RFC 6716 which incorporated technology from Skype’s SILK codec and Xiph.Org’s CELT codec.
| -| [libpciaccess](https://cgit.freedesktop.org/xorg/lib/libpciaccess/) | 0.17 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | system |
ShowGeneric PCI access library.
| -| [libpng](http://www.libpng.org/pub/png/libpng.html) | 1.6.40 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
Showlibpng is the official PNG reference library
| -| [libreadline](https://tiswww.case.edu/php/chet/readline/rltop.html) | 8.2 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowThe GNU Readline library provides a set of functions for use by applications that allow users to edit command lines as they are typed in. Both Emacs and vi editing modes are available. The Readline library includes additional functions to maintain a list of previously-entered command lines, to recall and perhaps reedit those lines, and perform csh-like history expansion on previous commands.
| -| [libsndfile](http://www.mega-nerd.com/libsndfile) | 1.2.2 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowLibsndfile is a C library for reading and writing files containing sampled sound (such as MS Windows WAV and the Apple/SGI AIFF format) through one standard library interface.
| -| [libsodium](https://doc.libsodium.org/) | 1.0.19 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowSodium is a modern, easy-to-use software library for encryption, decryption, signatures, password hashing and more.
| -| [libtirpc](https://sourceforge.net/projects/libtirpc/) | 1.3.4 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowLibtirpc is a port of Suns Transport-Independent RPC library to Linux.
| -| [libtool](https://www.gnu.org/software/libtool) | 2.4.7 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowGNU libtool is a generic library support script. Libtool hides the complexity of using shared libraries behind a consistent, portable interface.
| -| [libunwind](https://www.nongnu.org/libunwind/) | 1.6.2 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowThe primary goal of libunwind is to define a portable and efficient C programming interface (API) to determine the call-chain of a program. The API additionally provides the means to manipulate the preserved (callee-saved) state of each call-frame and to resume execution at any point in the call-chain (non-local goto). The API supports both local (same-process) and remote (across-process) operation. As such, the API is useful in a number of applications
| -| [libvorbis](https://xiph.org/vorbis/) | 1.3.7 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowOgg Vorbis is a fully open, non-proprietary, patent-and-royalty-free, general-purpose compressed audio format
| -| [libvori](https://brehm-research.de/libvori.php) | 220621 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowC++ library implementing the Voronoi integration as well as the compressed bqb file format. The present version of libvori is a very early development version, which is hard-coded to work with the CP2k program package.
| -| [libwebp](https://developers.google.com/speed/webp/) | 1.3.2 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowWebP is a modern image format that provides superior lossless and lossy compression for images on the web. Using WebP, webmasters and web developers can create smaller, richer images that make the web faster.
| -| [libxc](https://libxc.gitlab.io) | 6.2.2 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | chem |
ShowLibxc is a library of exchange-correlation functionals for density-functional theory. The aim is to provide a portable, well tested and reliable set of exchange and correlation functionals.
| -| [libxml2](https://gitlab.gnome.org/GNOME/libxml2/-/wikis) | 2.11.5 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowLibxml2 is the XML C parser and toolchain developed for the Gnome project (but usable outside of the Gnome platform).
| -| [libxslt](https://gitlab.gnome.org/GNOME/libxslt/-/wikis) | 1.1.38 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowLibxslt is the XSLT C library developed for the GNOME project (but usable outside of the Gnome platform).
| -| [libxsmm](https://github.com/libxsmm/libxsmm) | 1.17 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowLIBXSMM is a library for small dense and small sparse matrix-matrix multiplications targeting Intel Architecture (x86).
| -| [libyaml](https://pyyaml.org/wiki/LibYAML) | 0.2.5 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowLibYAML is a YAML parser and emitter written in C.
| -| [lit](https://llvm.org/docs/CommandGuide/lit.html) | 18.1.7 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
Showlit is a portable tool for executing LLVM and Clang style test suites, summarizing their results, and providing indication of failures.
| -| [lrcalc](https://sites.math.rutgers.edu/~asbuch/lrcalc/) | 2.1 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowThe Littlewood-Richardson Calculator is a program designed to compute Littlewood-Richardson coefficients.
| -| [lrslib](http://cgm.cs.mcgill.ca/~avis/C/lrs.html) | 7.2 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
Showlrslib is a self-contained ANSI C implementation of the reverse search algorithm for vertex enumeration/convex hull problems
| -| [lxml](https://lxml.de/) | 4.9.3 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowThe lxml XML toolkit is a Pythonic binding for the C libraries libxml2 and libxslt.
| -| [lz4](https://lz4.github.io/lz4/) | 1.9.4 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowLZ4 is lossless compression algorithm, providing compression speed at 400 MB/s per core. It features an extremely fast decoder, with speed in multiple GB/s per core.
| -| [m4ri](https://github.com/malb/m4ri) | 20200125 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowM4RI is a library for fast arithmetic with dense matrices over F2.
| -| [m4rie](https://github.com/malb/m4rie) | 20200125 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowM4RIE is a library for fast arithmetic with dense matrices.
| -| [make](https://www.gnu.org/software/make/make.html) | 4.4.1 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | devel |
ShowGNU version of make utility
| -| [makeinfo](https://www.gnu.org/software/texinfo/) | 7.1 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | devel |
Showmakeinfo is part of the Texinfo project, the official documentation format of the GNU project.
| -| [matplotlib](https://matplotlib.org) | 3.8.2 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | vis |
Showmatplotlib is a python 2D plotting library which produces publication quality figures in a variety of hardcopy formats and interactive environments across platforms. matplotlib can be used in python scripts, the python and ipython shell, web application servers, and six graphical user interface toolkits.
| -| [maturin](https://github.com/pyo3/maturin) | 1.3.1
1.5.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowThis project is meant as a zero configuration replacement for setuptools-rust and milksnake. It supports building wheels for python 3.5+ on windows, linux, mac and freebsd, can upload them to pypi and has basic pypy and graalpy support.
| -| [mcqd](https://gitlab.com/janezkonc/mcqd) | 1.0.0 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowMaxCliqueDyn is a fast exact algorithm for finding a maximum clique in an undirected graph.
| -| [meson-python](https://github.com/mesonbuild/meson-python) | 0.15.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowPython build backend (PEP 517) for Meson projects
| -| [mpi4py](https://github.com/mpi4py/mpi4py) | 3.1.5 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowMPI for Python (mpi4py) provides bindings of the Message Passing Interface (MPI) standard for the Python programming language, allowing any Python program to exploit multiple processors.
| -| [nanobind](https://github.com/wjakob/nanobind) | 2.5.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | devel |
Shownanobind is a small binding library for C++11 / C++17 / C++20 that heavily builds on capabilities introduced in recent versions of C++.
| -| [nauty](https://pallini.di.uniroma1.it/) | 2.8.8 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
Shownauty and Traces are programs for computing automorphism groups of graphs and digraphs. They can also produce a canonical label.
| -| [nbclassic](https://jupyter.org/) | 1.0.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowNbClassic provides a backwards compatible Jupyter Notebook interface that you can install side-by-side with the latest versions: That way, you can fearlessly upgrade without worrying about your classic extensions and customizations breaking.
| -| [ncurses](https://www.gnu.org/software/ncurses/) | 6.4 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | devel |
ShowThe Ncurses (new curses) library is a free software emulation of curses in System V Release 4.0, and more. It uses Terminfo format, supports pads and color and multiple highlights and forms characters and function-key mapping, and has all the other SYSV-curses enhancements over BSD Curses.
| -| [netCDF](https://www.unidata.ucar.edu/software/netcdf/) | 4.9.2 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | data |
ShowNetCDF (network Common Data Form) is a set of software libraries and machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data.
| -| [netcdf4-python](https://unidata.github.io/netcdf4-python/) | 1.6.5 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | data |
ShowPython/numpy interface to netCDF.
| -| [nettle](https://www.lysator.liu.se/~nisse/nettle/) | 3.9.1 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowNettle is a cryptographic library that is designed to fit easily in more or less any context: In crypto toolkits for object-oriented languages (C++, Python, Pike, ...), in applications like LSH or GNUPG, or even in kernel space.
| -| [networkx](https://pypi.python.org/pypi/networkx) | 3.2.1 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowNetworkX is a Python package for the creation, manipulation, and study of the structure, dynamics, and functions of complex networks.
| -| [nlohmann_json](https://github.com/nlohmann/json) | 3.11.3 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowJSON for Modern C++
| -| [nodejs](https://nodejs.org) | 20.9.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lang |
ShowNode.js is a platform built on Chrome's JavaScript runtime for easily building fast, scalable network applications. Node.js uses an event-driven, non-blocking I/O model that makes it lightweight and efficient, perfect for data-intensive real-time applications that run across distributed devices.
| -| [nose3](https://nose.readthedocs.io/) | 1.3.8 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | devel |
ShowNose extends unittest to make testing easier.
| -| [numactl](https://github.com/numactl/numactl) | 2.0.16 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowThe numactl program allows you to run your application program on specific cpu's and memory nodes. It does this by supplying a NUMA memory policy to the operating system before running your program. The libnuma library provides convenient ways for you to add NUMA memory policies into your own program.
| -| [numba](https://numba.pydata.org/) | 0.60.0 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | lang |
ShowNumba is an Open Source NumPy-aware optimizing compiler for Python sponsored by Continuum Analytics, Inc. It uses the remarkable LLVM compiler infrastructure to compile Python syntax to machine code.
| -| [ocamlbuild](https://github.com/ocaml/ocamlbuild) | 0.14.3 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | devel |
ShowOCamlbuild is a generic build tool, that has built-in rules for building OCaml library and programs.
| -| [occt](https://www.opencascade.com/) | 7.8.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | cae |
ShowOpen CASCADE Technology (OCCT) is an object-oriented C++ class library designed for rapid production of sophisticated domain-specific CAD/CAM/CAE applications.
| -| [optree](https://optree.readthedocs.io/en/latest/) | 0.13.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowOptimized PyTree Utilities
| -| [paramiko](https://paramiko.org) | 3.5.1 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowParamiko is a pure-Python (3.6+) implementation of the SSHv2 protocol, providing both client and server functionality. It provides the foundation for the high-level SSH library Fabric, which is what we recommend you use for common client use-cases such as running remote shell commands or transferring files.
| -| [patchelf](https://github.com/NixOS/patchelf) | 0.18.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowPatchELF is a small utility to modify the dynamic linker and RPATH of ELF executables.
| -| [petsc4py](https://gitlab.com/petsc/petsc) | 3.22.5 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
Showpetsc4py are Python bindings for PETSc, the Portable, Extensible Toolchain for Scientific Computation.
| -| [pigz](https://zlib.net/pigz/) | 2.8 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
Showpigz, which stands for parallel implementation of gzip, is a fully functional replacement for gzip that exploits multiple processors and multiple cores to the hilt when compressing data. pigz was written by Mark Adler, and uses the zlib and pthread libraries.
| -| [pixman](http://www.pixman.org/) | 0.42.2 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | vis |
ShowPixman is a low-level software library for pixel manipulation, providing features such as image compositing and trapezoid rasterization. Important users of pixman are the cairo graphics library and the X server.
| -| [pkgconf](https://github.com/pkgconf/pkgconf) | 1.8.0
2.0.3 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | devel |
Showpkgconf is a program which helps to configure compiler and linker flags for development libraries. It is similar to pkg-config from freedesktop.org.
| -| [pkgconfig](https://github.com/matze/pkgconfig) | 1.5.5 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | devel |
Showpkgconfig is a Python module to interface with the pkg-config command line tool
| -| [planarity](https://github.com/graph-algorithms/edge-addition-planarity-suite) | 3.0.2.0 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowA library for implementing graph algorithms
| -| [poetry](https://python-poetry.org) | 1.6.1 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowPython packaging and dependency management made easy. Poetry helps you declare, manage and install dependencies of Python projects, ensuring you have the right stack everywhere.
| -| [poppler](https://poppler.freedesktop.org) | 24.04.0 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowPoppler is a PDF rendering library
| -| [primecount](https://github.com/kimwalisch/primecount) | 7.14 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
Showprimecount is a command-line program and C/C++ library that counts the number of primes ≤ x (maximum 1031) using highly optimized implementations of the combinatorial prime counting algorithms.
| -| [primecountpy](https://pypi.org/project/primecountpy) | 0.1.0 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowThis is a Cython interface to the C++ library primecount.
| -| [protobuf-python](https://github.com/google/protobuf/) | 4.25.3 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | devel |
ShowPython Protocol Buffers runtime library.
| -| [protobuf](https://github.com/protocolbuffers/protobuf) | 25.3 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | devel |
ShowProtocol Buffers (a.k.a., protobuf) are Google's language-neutral, platform-neutral, extensible mechanism for serializing structured data.
| -| [psutil](https://github.com/giampaolo/psutil) | 6.1.0 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowA cross-platform process and system utilities module for Python
| -| [psycopg](https://psycopg.org/) | 3.1.18 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowPsycopg is the most popular PostgreSQL adapter for the Python programming language.
| -| [pugixml](https://pugixml.org/) | 1.14 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | data |
Showpugixml is a light-weight C++ XML processing library
| -| [pybedtools](https://daler.github.io/pybedtools) | 0.10.0 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | bio |
Showpybedtools wraps and extends BEDTools and offers feature-level manipulations from within Python.
| -| [pybind11](https://pybind11.readthedocs.io) | 2.11.1 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
Showpybind11 is a lightweight header-only library that exposes C++ types in Python and vice versa, mainly to create Python bindings of existing C++ code.
| -| [pyfaidx](https://pypi.python.org/pypi/pyfaidx) | 0.8.1.1 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | bio |
Showpyfaidx: efficient pythonic random access to fasta subsequences
| -| [pytest-flakefinder](https://github.com/dropbox/pytest-flakefinder) | 1.1.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowRuns tests multiple times to expose flakiness.
| -| [pytest-rerunfailures](https://github.com/pytest-dev/pytest-rerunfailures) | 14.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
Showpytest plugin to re-run tests to eliminate flaky failures.
| -| [pytest-shard](https://github.com/AdamGleave/pytest-shard) | 0.1.2 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
Showpytest plugin to support parallelism across multiple machines. Shards tests based on a hash of their test name enabling easy parallelism across machines, suitable for a wide variety of continuous integration services. Tests are split at the finest level of granularity, individual test cases, enabling parallelism even if all of your tests are in a single file (or even single parameterized test method).
| -| [python-isal](https://github.com/pycompression/python-isal) | 1.6.1 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowFaster zlib and gzip compatible compression and decompression by providing python bindings for the isa-l library.
| -| [rankwidth](https://sourceforge.net/projects/rankwidth/) | 0.9 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
Showrw calculates rank-width and rank-decompositions. It is based on ideas from "Computing rank-width exactly" by Sang-il Oum, "Sopra una formula numerica" by Ernesto Pascal, "Generation of a Vector from the Lexicographical Index" by B.P. Buckles and M. Lybanon and "Fast additions on masked integers" by Michael D. Adams and David S. Wise.
| -| [re2c](https://re2c.org) | 3.1 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
Showre2c is a free and open-source lexer generator for C and C++. Its main goal is generating fast lexers: at least as fast as their reasonably optimized hand-coded counterparts. Instead of using traditional table-driven approach, re2c encodes the generated finite state automata directly in the form of conditional jumps and comparisons.
| -| [robin-map](https://github.com/Tessil/robin-map) | 1.3.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | devel |
Showrobin-map is a C++ implementation of a fast and memory efficient hash table. It is based on Robin Hood hashing with backward shift deletion.
| -| [scikit-bio](http://scikit-bio.org) | 0.6.2 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | bio |
Showscikit-bio is an open-source, BSD-licensed Python 3 package providing data structures, algorithms and educational resources for bioinformatics.
| -| [scikit-build-core](https://scikit-build.readthedocs.io/en/latest/) | 0.10.7
0.9.3 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowScikit-build-core is a complete ground-up rewrite of scikit-build on top of modern packaging APIs. It provides a bridge between CMake and the Python build system, allowing you to make Python modules with CMake.
| -| [scikit-build](https://scikit-build.readthedocs.io/en/latest) | 0.17.6 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowScikit-Build, or skbuild, is an improved build system generator for CPython C/C++/Fortran/Cython extensions.
| -| [scikit-learn](https://scikit-learn.org/stable/index.html) | 1.4.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | data |
ShowScikit-learn integrates machine learning algorithms in the tightly-knit scientific Python world, building upon numpy, scipy, and matplotlib. As a machine-learning module, it provides versatile tools for data mining and analysis in any field of science and engineering. It strives to be simple and efficient, accessible to everybody, and reusable in various contexts.
| -| [setuptools-rust](https://github.com/PyO3/setuptools-rust) | 1.8.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
Showsetuptools-rust is a plugin for setuptools to build Rust Python extensions implemented with PyO3 or rust-cpython.
| -| [setuptools](https://pypi.org/project/setuptools) | 80.9.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | devel |
ShowEasily download, build, install, upgrade, and uninstall Python packages
| -| [sirocco](https://github.com/miguelmarco/SIROCCO2/) | 2.1.0 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowC++ library that allows to compute piecewise linear approximations of the path followed by the root of a complex polynomial
| -| [slepc4py](https://bitbucket.org/slepc/slepc4py) | 3.22.2 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowPython bindings for SLEPc, the Scalable Library for Eigenvalue Problem Computations.
| -| [snakemake](https://snakemake.readthedocs.io) | 8.28.0 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowThe Snakemake workflow management system is a tool to create reproducible and scalable data analyses.
| -| [snappy](https://github.com/google/snappy) | 1.1.10 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowSnappy is a compression/decompression library. It does not aim for maximum compression, or compatibility with any other compression library; instead, it aims for very high speeds and reasonable compression.
| -| [spdlog](https://github.com/gabime/spdlog) | 1.12.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowVery fast, header-only/compiled, C++ logging library.
| -| [statsmodels](https://www.statsmodels.org/) | 0.14.1 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowStatsmodels is a Python module that allows users to explore data, estimate statistical models, and perform statistical tests.
| -| [sympy](https://sympy.org/) | 1.12 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
ShowSymPy is a Python library for symbolic mathematics. It aims to become a full-featured computer algebra system (CAS) while keeping the code as simple as possible in order to be comprehensible and easily extensible. SymPy is written entirely in Python and does not require any external libraries.
| -| [tbb](https://github.com/oneapi-src/oneTBB) | 2021.13.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowIntel(R) Threading Building Blocks (Intel(R) TBB) lets you easily write parallel C++ programs that take full advantage of multicore performance, that are portable, composable and have future-proof scalability.
| -| [tdlib](https://github.com/freetdi/tdlib/) | 0.9.3 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | math |
Showtreedec provides tree decomposition algorithms.
| -| [texlive](https://tug.org) | 20230313 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | devel |
ShowTeX is a typesetting language. Instead of visually formatting your text, you enter your manuscript text intertwined with TeX commands in a plain text file. You then run TeX to produce formatted output, such as a PDF file. Thus, in contrast to standard word processors, your document is a separate file that does not pretend to be a representation of the final typeset output, and so can be easily edited and manipulated.
| -| [tlparse](https://github.com/ezyang/tlparse) | 0.3.5 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowParse structured PT2 (PyTorch 2) logs
| -| [tmpi](https://github.com/Azrael3000/tmpi/) | 1.0.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | debugger |
ShowRun multiple MPI processes as a grid in a new tmux window and multiplex keyboard input to all of them. Useful for debugging MPI application with GDB.
| -| [tornado](https://github.com/tornadoweb/tornado) | 6.4 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowTornado is a Python web framework and asynchronous networking library.
| -| [tqdm](https://github.com/tqdm/tqdm) | 4.66.2 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowA fast, extensible progress bar for Python and CLI
| -| [typing-extensions](https://github.com/python/typing_extensions) | 4.10.0 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | devel |
ShowTyping Extensions - Backported and Experimental Type Hints for Python
| -| [umap-learn](https://umap-learn.readthedocs.io/en/latest/) | 0.5.7 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowUniform Manifold Approximation and Projection (UMAP) is a dimension reduction technique that can be used for visualisation similarly to t-SNE, but also for general non-linear dimension reduction.
| -| [unittest-xml-reporting](http://github.com/xmlrunner/unittest-xml-reporting) | 3.1.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowA unittest test runner that can save test results to XML files in xUnit format. The files can be consumed by a wide range of tools, such as build systems, IDEs and continuous integration servers.
| -| [utf8proc](https://github.com/JuliaStrings/utf8proc) | 2.9.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
Showutf8proc is a small, clean C library that provides Unicode normalization, case-folding, and other operations for data in the UTF-8 encoding.
| -| [util-linux](https://www.kernel.org/pub/linux/utils/util-linux) | 2.39 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowSet of Linux utilities
| -| [virtualenv](https://github.com/pypa/virtualenv) | 20.24.6 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowA tool for creating isolated virtual python environments.
| -| [wrapt](https://pypi.org/project/wrapt/) | 1.16.0 | AMD EPYC, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
ShowThe aim of the wrapt module is to provide a transparent object proxy for Python, which can be used as the basis for the construction of function wrappers and decorator functions.
| -| [x264](https://www.videolan.org/developers/x264.html) | 20231019 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | vis |
Showx264 is a free software library and application for encoding video streams into the H.264/MPEG-4 AVC compression format, and is released under the terms of the GNU GPL.
| -| [x265](https://x265.org/) | 3.5 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | vis |
Showx265 is a free software library and application for encoding video streams into the H.265 AVC compression format, and is released under the terms of the GNU GPL.
| -| [xorg-macros](https://gitlab.freedesktop.org/xorg/util/macros) | 1.20.0 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | devel |
ShowX.org macros utilities.
| -| [xprop](https://www.x.org/wiki/) | 1.2.7 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | vis |
ShowThe xprop utility is for displaying window and font properties in an X server. One window or font is selected using the command line arguments or possibly in the case of a window, by clicking on the desired window. A list of properties is then given, possibly with formatting information.
| -| [xxd](https://www.vim.org) | 9.1.0307 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | tools |
Showxxd is part of the VIM package and this will only install xxd, not vim! xxd converts to/from hexdumps of binary files.
| -| [zlib](https://www.zlib.net/) | 1.2.13 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
Showzlib is designed to be a free, general-purpose, legally unencumbered -- that is, not covered by any patents -- lossless data-compression library for use on virtually any computer hardware and operating system.
| -| [zstd](https://facebook.github.io/zstd) | 1.5.5 | AMD EPYC, Intel Broadwell, Intel Sapphire Rapids, Intel Skylake | aion, iris | lib |
ShowZstandard is a real-time compression algorithm, providing high compression ratios. It offers a very wide range of compression/speed trade-off, while being backed by a very fast decoder. It also offers a special mode for small data, called dictionary compression, and can create dictionaries from any sample set.
| \ No newline at end of file diff --git a/docs/software/swsets/2024a.md b/docs/software/swsets/2024a.md deleted file mode 100644 index 344039733..000000000 --- a/docs/software/swsets/2024a.md +++ /dev/null @@ -1,349 +0,0 @@ -| Software | Version | Architectures | Clusters | Category | Description | -|:------------------------------------------------------------------------------------------------------|:------------------|:-------------------------------------------------------|:-----------|:-----------|:---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------| -| [ACTC](https://sourceforge.net/projects/actc) | 1.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowACTC converts independent triangles into triangle strips or fans.
| -| [ATK](https://developer.gnome.org/atk/) | 2.38.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | vis |
ShowATK provides the set of accessibility interfaces that are implemented by other toolkits and applications. Using the ATK interfaces, accessibility tools have full access to view and control running applications.
| -| [Abseil](https://abseil.io/) | 20240722.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowAbseil is an open-source collection of C++ library code designed to augment the C++ standard library. The Abseil library code is collected from Google's own C++ code base, has been extensively tested and used in production, and is the same code we depend on in our daily coding lives.
| -| [Apptainer](https://github.com/apptainer/apptainer) | 1.4.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
ShowApptainer is an open source container platform designed to be simple, fast, and secure. Many container platforms are available, but Apptainer is designed for ease-of-use on shared systems and in high performance computing (HPC) environments
| -| [Armadillo](https://arma.sourceforge.net/) | 14.0.3 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | numlib |
ShowArmadillo is an open-source C++ linear algebra library (matrix maths) aiming towards a good balance between speed and ease of use. Integer, floating point and complex numbers are supported, as well as a subset of trigonometric and statistics functions.
| -| [Arrow](https://arrow.apache.org) | 17.0.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | data |
ShowApache Arrow (incl. PyArrow Python bindings), a cross-language development platform for in-memory data.
| -| [Autoconf](https://www.gnu.org/software/autoconf/) | 2.71 | NVIDIA Tesla | iris | devel |
ShowAutoconf is an extensible package of M4 macros that produce shell scripts to automatically configure software source code packages. These scripts can adapt the packages to many kinds of UNIX-like systems without manual user intervention. Autoconf creates a configuration script for a package from a template file that lists the operating system features that the package can use, in the form of M4 macro calls.
| -| [Autoconf](https://www.gnu.org/software/autoconf/) | 2.72 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | devel |
ShowAutoconf is an extensible package of M4 macros that produce shell scripts to automatically configure software source code packages. These scripts can adapt the packages to many kinds of UNIX-like systems without manual user intervention. Autoconf creates a configuration script for a package from a template file that lists the operating system features that the package can use, in the form of M4 macro calls.
| -| [Automake](https://www.gnu.org/software/automake/automake.html) | 1.16.5 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | devel |
ShowAutomake: GNU Standards-compliant Makefile generator
| -| [Autotools](https://autotools.io) | 20220317 | NVIDIA Tesla | iris | devel |
ShowThis bundle collect the standard GNU build tools: Autoconf, Automake and libtool
| -| [Autotools](https://autotools.io) | 20231222 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | devel |
ShowThis bundle collect the standard GNU build tools: Autoconf, Automake and libtool
| -| [BLIS](https://github.com/flame/blis/) | 1.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | numlib |
ShowBLIS is a portable software framework for instantiating high-performance BLAS-like dense linear algebra libraries.
| -| [Bison](https://www.gnu.org/software/bison) | 3.8.2 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | lang |
ShowBison is a general-purpose parser generator that converts an annotated context-free grammar into a deterministic LR or generalized LR (GLR) parser employing LALR(1) parser tables.
| -| [Boost](https://www.boost.org/) | 1.85.0 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | devel |
ShowBoost provides free peer-reviewed portable C++ source libraries.
| -| [Brotli](https://github.com/google/brotli) | 1.1.0 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | lib |
ShowBrotli is a generic-purpose lossless compression algorithm that compresses data using a combination of a modern variant of the LZ77 algorithm, Huffman coding and 2nd order context modeling, with a compression ratio comparable to the best currently available general-purpose compression methods. It is similar in speed with deflate but offers more dense compression. The specification of the Brotli Compressed Data Format is defined in RFC 7932.
| -| [Brunsli](https://github.com/google/brunsli/) | 0.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowBrunsli is a lossless JPEG repacking library.
| -| [CFITSIO](https://heasarc.gsfc.nasa.gov/fitsio/) | 4.4.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowCFITSIO is a library of C and Fortran subroutines for reading and writing data files in FITS (Flexible Image Transport System) data format.
| -| [CGAL](https://www.cgal.org/) | 5.6.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | numlib |
ShowThe goal of the CGAL Open Source Project is to provide easy access to efficient and reliable geometric algorithms in the form of a C++ library.
| -| [CMake](https://www.cmake.org) | 3.29.3
3.31.8 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | devel |
ShowCMake, the cross-platform, open-source build system. CMake is a family of tools designed to build, test and package software.
| -| [CUDA](https://developer.nvidia.com/cuda-toolkit) | 12.6.0 | NVIDIA Tesla | iris | system |
ShowCUDA (formerly Compute Unified Device Architecture) is a parallel computing platform and programming model created by NVIDIA and implemented by the graphics processing units (GPUs) that they produce. CUDA gives developers access to the virtual instruction set and memory of the parallel computational elements in CUDA GPUs.
| -| [Catch2](https://github.com/catchorg/Catch2) | 2.13.10 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | lib |
ShowA modern, C++-native, header-only, test framework for unit-tests, TDD and BDD - using C++11, C++14, C++17 and later
| -| [Cbc](https://github.com/coin-or/Cbc) | 2.10.12 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | math |
ShowCbc (Coin-or branch and cut) is an open-source mixed integer linear programming solver written in C++. It can be used as a callable library or using a stand-alone executable.
| -| [Cgl](https://github.com/coin-or/Cgl) | 0.60.8 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | math |
ShowThe COIN-OR Cut Generation Library (Cgl) is a collection of cut generators that can be used with other COIN-OR packages that make use of cuts, such as, among others, the linear solver Clp or the mixed integer linear programming solvers Cbc or BCP. Cgl uses the abstract class OsiSolverInterface (see Osi) to use or communicate with a solver. It does not directly call a solver.
| -| [Clp](https://github.com/coin-or/Clp) | 1.17.10 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | math |
ShowClp (Coin-or linear programming) is an open-source linear programming solver. It is primarily meant to be used as a callable library, but a basic, stand-alone executable version is also available.
| -| [CoinUtils](https://github.com/coin-or/CoinUtils) | 2.11.12 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | math |
ShowCoinUtils (Coin-OR Utilities) is an open-source collection of classes and functions that are generally useful to more than one COIN-OR project.
| -| [CubeGUI](https://www.scalasca.org/software/cube-4.x/download.html) | 4.8.2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | perf |
ShowCube, which is used as performance report explorer for Scalasca and Score-P, is a generic tool for displaying a multi-dimensional performance space consisting of the dimensions (i) performance metric, (ii) call path, and (iii) system resource. Each dimension can be represented as a tree, where non-leaf nodes of the tree can be collapsed or expanded to achieve the desired level of granularity. This module provides the Cube graphical report explorer.
| -| [CubeLib](https://www.scalasca.org/software/cube-4.x/download.html) | 4.8.2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | perf |
ShowCube, which is used as performance report explorer for Scalasca and Score-P, is a generic tool for displaying a multi-dimensional performance space consisting of the dimensions (i) performance metric, (ii) call path, and (iii) system resource. Each dimension can be represented as a tree, where non-leaf nodes of the tree can be collapsed or expanded to achieve the desired level of granularity. This module provides the Cube general purpose C++ library component and command-line tools.
| -| [CubeWriter](https://www.scalasca.org/software/cube-4.x/download.html) | 4.8.2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | perf |
ShowCube, which is used as performance report explorer for Scalasca and Score-P, is a generic tool for displaying a multi-dimensional performance space consisting of the dimensions (i) performance metric, (ii) call path, and (iii) system resource. Each dimension can be represented as a tree, where non-leaf nodes of the tree can be collapsed or expanded to achieve the desired level of granularity. This module provides the Cube high-performance C writer library component.
| -| [Cython](https://cython.org/) | 3.0.10 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | lang |
ShowCython is an optimising static compiler for both the Python programming language and the extended Cython programming language (based on Pyrex).
| -| [DBus](https://dbus.freedesktop.org/) | 1.15.8 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | devel |
ShowD-Bus is a message bus system, a simple way for applications to talk to one another. In addition to interprocess communication, D-Bus helps coordinate process lifecycle; it makes it simple and reliable to code a "single instance" application or daemon, and to launch applications and daemons on demand when their services are needed.
| -| [Doxygen](https://www.doxygen.org) | 1.11.0 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | devel |
ShowDoxygen is a documentation system for C++, C, Java, Objective-C, Python, IDL (Corba and Microsoft flavors), Fortran, VHDL, PHP, C#, and to some extent D.
| -| [ELPA](https://elpa.mpcdf.mpg.de/) | 2024.05.001 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | math |
ShowEigenvalue SoLvers for Petaflop-Applications.
| -| [Eigen](https://eigen.tuxfamily.org) | 3.4.0 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | math |
ShowEigen is a C++ template library for linear algebra: matrices, vectors, numerical solvers, and related algorithms.
| -| [FFTW.MPI](https://www.fftw.org) | 3.3.10 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | numlib |
ShowFFTW is a C subroutine library for computing the discrete Fourier transform (DFT) in one or more dimensions, of arbitrary input size, and of both real and complex data.
| -| [FFTW](https://www.fftw.org) | 3.3.10 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | numlib |
ShowFFTW is a C subroutine library for computing the discrete Fourier transform (DFT) in one or more dimensions, of arbitrary input size, and of both real and complex data.
| -| [FFmpeg](https://www.ffmpeg.org/) | 7.0.2 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | vis |
ShowA complete, cross-platform solution to record, convert and stream audio and video.
| -| [FLAC](https://xiph.org/flac/) | 1.4.3 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowFLAC stands for Free Lossless Audio Codec, an audio format similar to MP3, but lossless, meaning that audio is compressed in FLAC without any loss in quality.
| -| [FLTK](https://www.fltk.org) | 1.4.3 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | vis |
ShowFLTK is a cross-platform C++ GUI toolkit for UNIX/Linux (X11), Microsoft Windows, and MacOS X. FLTK provides modern GUI functionality without the bloat and supports 3D graphics via OpenGL and its built-in GLUT emulation.
| -| [FlexiBLAS](https://gitlab.mpi-magdeburg.mpg.de/software/flexiblas-release) | 3.4.4 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowFlexiBLAS is a wrapper library that enables the exchange of the BLAS and LAPACK implementation used by a program without recompiling or relinking it.
| -| [FreeImage](http://freeimage.sourceforge.net) | 3.18.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | vis |
ShowFreeImage is an Open Source library project for developers who would like to support popular graphics image formats like PNG, BMP, JPEG, TIFF and others as needed by today's multimedia applications. FreeImage is easy to use, fast, multithreading safe.
| -| [FriBidi](https://github.com/fribidi/fribidi) | 1.0.15 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | lang |
ShowThe Free Implementation of the Unicode Bidirectional Algorithm.
| -| [GCC](https://gcc.gnu.org/) | 13.3.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | compiler |
ShowThe GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,...).
| -| [GCCcore](https://gcc.gnu.org/) | 13.2.0 | NVIDIA Tesla | iris | compiler |
ShowThe GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,...).
| -| [GCCcore](https://gcc.gnu.org/) | 13.3.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | compiler |
ShowThe GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,...).
| -| [GDAL](https://www.gdal.org) | 3.10.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | data |
ShowGDAL is a translator library for raster geospatial data formats that is released under an X/MIT style Open Source license by the Open Source Geospatial Foundation. As a library, it presents a single abstract data model to the calling application for all supported formats. It also comes with a variety of useful commandline utilities for data translation and processing.
| -| [GDB](https://www.gnu.org/software/gdb/gdb.html) | 14.2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | debugger |
ShowThe GNU Project Debugger
| -| [GDRCopy](https://github.com/NVIDIA/gdrcopy) | 2.4.1 | NVIDIA Tesla | iris | lib |
ShowA low-latency GPU memory copy library based on NVIDIA GPUDirect RDMA technology.
| -| [GEOS](https://trac.osgeo.org/geos) | 3.12.2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | math |
ShowGEOS (Geometry Engine - Open Source) is a C++ port of the Java Topology Suite (JTS)
| -| [GLPK](https://www.gnu.org/software/glpk/) | 5.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
ShowThe GLPK (GNU Linear Programming Kit) package is intended for solving large-scale linear programming (LP), mixed integer programming (MIP), and other related problems. It is a set of routines written in ANSI C and organized in the form of a callable library.
| -| [GLib](https://www.gtk.org/) | 2.80.4 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | vis |
ShowGLib is one of the base libraries of the GTK+ project
| -| [GMP](https://gmplib.org/) | 6.3.0 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | math |
ShowGMP is a free library for arbitrary precision arithmetic, operating on signed integers, rational numbers, and floating point numbers.
| -| [GObject-Introspection](https://gi.readthedocs.io/en/latest/) | 1.80.1 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | devel |
ShowGObject introspection is a middleware layer between C libraries (using GObject) and language bindings. The C library can be scanned at compile time and generate a metadata file, in addition to the actual native C library. Then at runtime, language bindings can read this metadata and automatically provide bindings to call into the C library.
| -| [GSL](https://www.gnu.org/software/gsl/) | 2.8 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | numlib |
ShowThe GNU Scientific Library (GSL) is a numerical library for C and C++ programmers. The library provides a wide range of mathematical routines such as random number generators, special functions and least-squares fitting.
| -| [GST-plugins-base](https://gstreamer.freedesktop.org/) | 1.24.8 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | vis |
ShowGStreamer is a library for constructing graphs of media-handling components. The applications it supports range from simple Ogg/Vorbis playback, audio/video streaming to complex audio (mixing) and video (non-linear editing) processing.
| -| [GStreamer](https://gstreamer.freedesktop.org/) | 1.24.8 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | vis |
ShowGStreamer is a library for constructing graphs of media-handling components. The applications it supports range from simple Ogg/Vorbis playback, audio/video streaming to complex audio (mixing) and video (non-linear editing) processing.
| -| [GTK3](https://developer.gnome.org/gtk3/stable/) | 3.24.42 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | vis |
ShowGTK+ is the primary library used to construct user interfaces in GNOME. It provides all the user interface controls, or widgets, used in a common graphical application. Its object-oriented API allows you to construct user interfaces without dealing with the low-level details of drawing and device interaction.
| -| [Gdk-Pixbuf](https://docs.gtk.org/gdk-pixbuf/) | 2.42.11 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | vis |
ShowThe Gdk Pixbuf is a toolkit for image loading and pixel buffer manipulation. It is used by GTK+ 2 and GTK+ 3 to load and manipulate images. In the past it was distributed as part of GTK+ 2 but it was split off into a separate package in preparation for the change to GTK+ 3.
| -| [Ghostscript](https://ghostscript.com) | 10.03.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
ShowGhostscript is a versatile processor for PostScript data with the ability to render PostScript to different targets. It used to be part of the cups printing stack, but is no longer used for that.
| -| [GitPython](https://gitpython.readthedocs.org) | 3.1.43 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowGitPython is a python library used to interact with Git repositories
| -| [Go](https://www.golang.org) | 1.23.6 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | compiler |
ShowGo is an open source programming language that makes it easy to build simple, reliable, and efficient software.
| -| [Graphene](https://ebassi.github.io/graphene/) | 1.10.8 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowGraphene is a thin layer of types for graphic libraries
| -| [Gurobi](https://www.gurobi.com) | 12.0.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | math |
ShowThe Gurobi Optimizer is a state-of-the-art solver for mathematical programming. The solvers in the Gurobi Optimizer were designed from the ground up to exploit modern architectures and multi-core processors, using the most advanced implementations of the latest algorithms.
| -| [HDF5](https://portal.hdfgroup.org/display/support) | 1.14.5 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | data |
ShowHDF5 is a data model, library, and file format for storing and managing data. It supports an unlimited variety of datatypes, and is designed for flexible and efficient I/O and for high volume and complex data.
| -| [HDF](https://support.hdfgroup.org/products/hdf4/) | 4.3.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | data |
ShowHDF (also known as HDF4) is a library and multi-object file format for storing and managing data between machines.
| -| [HarfBuzz](https://www.freedesktop.org/wiki/Software/HarfBuzz) | 9.0.0 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | vis |
ShowHarfBuzz is an OpenType text shaping engine.
| -| [Hypre](https://computation.llnl.gov/projects/hypre-scalable-linear-solvers-multigrid-methods) | 2.32.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | numlib |
ShowHypre is a library for solving large, sparse linear systems of equations on massively parallel computers. The problems of interest arise in the simulation codes being developed at LLNL and elsewhere to study physical phenomena in the defense, environmental, energy, and biological sciences.
| -| [ICU](https://icu.unicode.org) | 75.1 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | lib |
ShowICU is a mature, widely used set of C/C++ and Java libraries providing Unicode and Globalization support for software applications.
| -| [IPython](https://ipython.org/index.html) | 8.27.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
ShowIPython provides a rich architecture for interactive computing with: Powerful interactive shells (terminal and Qt-based). A browser-based notebook with support for code, text, mathematical expressions, inline plots and other rich media. Support for interactive data visualization and use of GUI toolkits. Flexible, embeddable interpreters to load into your own projects. Easy to use, high performance tools for parallel computing.
| -| [ISL](https://libisl.sourceforge.io) | 0.26 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | math |
Showisl is a library for manipulating sets and relations of integer points bounded by linear constraints.
| -| [ImageMagick](https://www.imagemagick.org/) | 7.1.1-38 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | vis |
ShowImageMagick is a software suite to create, edit, compose, or convert bitmap images
| -| [Imath](https://imath.readthedocs.io/en/latest/) | 3.1.11 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowImath is a C++ and python library of 2D and 3D vector, matrix, and math operations for computer graphics
| -| [JasPer](https://www.ece.uvic.ca/~frodo/jasper/) | 4.2.4 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | vis |
ShowThe JasPer Project is an open-source initiative to provide a free software-based reference implementation of the codec specified in the JPEG-2000 Part-1 standard.
| -| [Java](http://openjdk.java.net) | 17.0.15 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lang |
ShowJava Platform, Standard Edition (Java SE) lets you develop and deploy Java applications on desktops and servers.
| -| [Java](https://java.com/) | 17
21 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lang |
ShowJava Platform, Standard Edition (Java SE) lets you develop and deploy Java applications on desktops and servers.
| -| [Java](https://openjdk.org) | 21.0.8 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lang |
ShowJava Platform, Standard Edition (Java SE) lets you develop and deploy Java applications on desktops and servers.
| -| [Julia](https://julialang.org) | 1.12.4 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lang |
ShowJulia is a high-level, high-performance dynamic programming language for numerical computing
| -| [KaHIP](https://kahip.github.io/) | 3.17 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | math |
ShowThe graph partitioning framework KaHIP -- Karlsruhe High Quality Partitioning.
| -| [LAME](http://lame.sourceforge.net/) | 3.100 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | data |
ShowLAME is a high quality MPEG Audio Layer III (MP3) encoder licensed under the LGPL.
| -| [LAMMPS](https://www.lammps.org) | 29Aug2024_update2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | chem |
ShowLAMMPS is a classical molecular dynamics code, and an acronym for Large-scale Atomic/Molecular Massively Parallel Simulator. LAMMPS has potentials for solid-state materials (metals, semiconductors) and soft matter (biomolecules, polymers) and coarse-grained or mesoscopic systems. It can be used to model atoms or, more generically, as a parallel particle simulator at the atomic, meso, or continuum scale. LAMMPS runs on single processors or in parallel using message-passing techniques and a spatial-decomposition of the simulation domain. The code is designed to be easy to modify or extend with new functionality.
| -| [LERC](https://github.com/Esri/lerc) | 4.0.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowLERC is an open-source image or raster format which supports rapid encoding and decoding for any pixel type (not just RGB or Byte). Users set the maximum compression error per pixel while encoding, so the precision of the original input image is preserved (within user defined error bounds).
| -| [LLVM](https://llvm.org/) | 18.1.8 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | compiler |
ShowThe LLVM Core libraries provide a modern source- and target-independent optimizer, along with code generation support for many popular CPUs (as well as some less common ones!) These libraries are built around a well specified code representation known as the LLVM intermediate representation ("LLVM IR"). The LLVM Core libraries are well documented, and it is particularly easy to invent your own language (or port an existing compiler) to use LLVM as an optimizer and code generator.
| -| [LibRaw](https://www.libraw.org/) | 0.21.3 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | vis |
ShowThe LibRaw library provides a simple and unified interface for extracting out of RAW files generated by digital photo cameras the following: - RAW data (pixel values) - Metadata necessary for processing RAW (geometry, CFA / Bayer pattern, black level, white balance, etc.) - Embedded preview / thumbnail.
| -| [LibTIFF](https://libtiff.gitlab.io/libtiff/) | 4.6.0 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | lib |
Showtiff: Library and tools for reading and writing TIFF data files
| -| [LittleCMS](https://www.littlecms.com/) | 2.16 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | vis |
ShowLittle CMS intends to be an OPEN SOURCE small-footprint color management engine, with special focus on accuracy and performance.
| -| [Lua](https://www.lua.org/) | 5.4.7 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lang |
ShowLua is a powerful, fast, lightweight, embeddable scripting language. Lua combines simple procedural syntax with powerful data description constructs based on associative arrays and extensible semantics. Lua is dynamically typed, runs by interpreting bytecode for a register-based virtual machine, and has automatic memory management with incremental garbage collection, making it ideal for configuration, scripting, and rapid prototyping.
| -| [M4](https://www.gnu.org/software/m4/m4.html) | 1.4.19 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | devel |
ShowGNU M4 is an implementation of the traditional Unix macro processor. It is mostly SVR4 compatible although it has some extensions (for example, handling more than 9 positional parameters to macros). GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, etc.
| -| [MDI](https://github.com/MolSSI-MDI/MDI_Library) | 1.4.26 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | chem |
ShowThe MolSSI Driver Interface (MDI) project provides a standardized API for fast, on-the-fly communication between computational chemistry codes. This greatly simplifies the process of implementing methods that require the cooperation of multiple software packages and enables developers to write a single implementation that works across many different codes. The API is sufficiently general to support a wide variety of techniques, including QM/MM, ab initio MD, machine learning, advanced sampling, and path integral MD, while also being straightforwardly extensible. Communication between codes is handled by the MDI Library, which enables tight coupling between codes using either the MPI or TCP/IP methods.
| -| [METIS](https://karypis.github.io/glaros/projects/gp.html) | 5.1.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | math |
ShowMETIS is a set of serial programs for partitioning graphs, partitioning finite element meshes, and producing fill reducing orderings for sparse matrices. The algorithms implemented in METIS are based on the multilevel recursive-bisection, multilevel k-way, and multi-constraint partitioning schemes.
| -| [MPC](http://www.multiprecision.org/) | 1.3.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | math |
ShowGnu Mpc is a C library for the arithmetic of complex numbers with arbitrarily high precision and correct rounding of the result. It extends the principles of the IEEE-754 standard for fixed precision real floating point numbers to complex numbers, providing well-defined semantics for every operation. At the same time, speed of operation at high precision is a major design goal.
| -| [MPFR](https://www.mpfr.org) | 4.2.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | math |
ShowThe MPFR library is a C library for multiple-precision floating-point computations with correct rounding.
| -| [MUMPS](https://mumps-solver.org) | 5.7.2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | math |
ShowA parallel sparse direct solver
| -| [Mako](https://www.makotemplates.org) | 1.3.5 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | devel |
ShowA super-fast templating language that borrows the best ideas from the existing templating languages
| -| [Mesa](https://www.mesa3d.org/) | 24.1.3 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | vis |
ShowMesa is an open-source implementation of the OpenGL specification - a system for rendering interactive 3D graphics.
| -| [Meson](https://mesonbuild.com) | 1.4.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
ShowMeson is a cross-platform build system designed to be both as fast and as user friendly as possible.
| -| [NASM](https://www.nasm.us/) | 2.16.03 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | lang |
ShowNASM: General-purpose x86 assembler
| -| [NCCL](https://developer.nvidia.com/nccl) | 2.22.3 | NVIDIA Tesla | iris | lib |
ShowThe NVIDIA Collective Communications Library (NCCL) implements multi-GPU and multi-node collective communication primitives that are performance optimized for NVIDIA GPUs.
| -| [NLopt](http://ab-initio.mit.edu/wiki/index.php/NLopt) | 2.7.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | numlib |
ShowNLopt is a free/open-source library for nonlinear optimization, providing a common interface for a number of different free optimization routines available online as well as original implementations of various other algorithms.
| -| [NSPR](https://developer.mozilla.org/en-US/docs/Mozilla/Projects/NSPR) | 4.35 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowNetscape Portable Runtime (NSPR) provides a platform-neutral API for system level and libc-like functions.
| -| [NSS](https://developer.mozilla.org/en-US/docs/Mozilla/Projects/NSS) | 3.104 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowNetwork Security Services (NSS) is a set of libraries designed to support cross-platform development of security-enabled client and server applications.
| -| [NVHPC](https://developer.nvidia.com/hpc-sdk/) | 24.11 | NVIDIA Tesla | iris | compiler |
ShowC, C++ and Fortran compilers included with the NVIDIA HPC SDK (previously: PGI)
| -| [Nextflow](https://www.nextflow.io/) | 25.04.6 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
ShowNextflow is a reactive workflow framework and a programming DSL that eases writing computational pipelines with complex data
| -| [Ninja](https://ninja-build.org/) | 1.12.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
ShowNinja is a small build system with a focus on speed.
| -| [OPARI2](https://www.score-p.org) | 2.0.8 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | perf |
ShowOPARI2, the successor of Forschungszentrum Juelich's OPARI, is a source-to-source instrumentation tool for OpenMP and hybrid codes. It surrounds OpenMP directives and runtime library calls with calls to the POMP2 measurement interface.
| -| [OSU-Micro-Benchmarks](https://mvapich.cse.ohio-state.edu/benchmarks/) | 7.5 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | perf |
ShowOSU Micro-Benchmarks
| -| [OTF2](https://www.score-p.org) | 3.0.3 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | perf |
ShowThe Open Trace Format 2 is a highly scalable, memory efficient event trace data format plus support library. It is the new standard trace format for Scalasca, Vampir, and TAU and is open for other tools.
| -| [OpenBLAS](https://www.openblas.net/) | 0.3.27 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | numlib |
ShowOpenBLAS is an optimized BLAS library based on GotoBLAS2 1.13 BSD version.
| -| [OpenEXR](https://www.openexr.com/) | 3.2.4 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | vis |
ShowOpenEXR is a high dynamic-range (HDR) image file format developed by Industrial Light & Magic for use in computer imaging applications
| -| [OpenFOAM](https://www.openfoam.com/) | v2406 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | cae |
ShowOpenFOAM is a free, open source CFD software package. OpenFOAM has an extensive range of features to solve anything from complex fluid flows involving chemical reactions, turbulence and heat transfer, to solid dynamics and electromagnetics.
| -| [OpenJPEG](https://www.openjpeg.org/) | 2.5.2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowOpenJPEG is an open-source JPEG 2000 codec written in C language. It has been developed in order to promote the use of JPEG 2000, a still-image compression standard from the Joint Photographic Experts Group (JPEG). Since may 2015, it is officially recognized by ISO/IEC and ITU-T as a JPEG 2000 Reference Software.
| -| [OpenMPI](https://www.open-mpi.org/) | 5.0.3 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | mpi |
ShowThe Open MPI Project is an open source MPI-3 implementation.
| -| [OpenPGM](https://code.google.com/p/openpgm/) | 5.2.122 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | system |
ShowOpenPGM is an open source implementation of the Pragmatic General Multicast (PGM) specification in RFC 3208 available at www.ietf.org. PGM is a reliable and scalable multicast protocol that enables receivers to detect loss, request retransmission of lost data, or notify an application of unrecoverable loss. PGM is a receiver-reliable protocol, which means the receiver is responsible for ensuring all data is received, absolving the sender of reception responsibility.
| -| [OpenSSL](https://www.openssl.org/) | 3 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | system |
ShowThe OpenSSL Project is a collaborative effort to develop a robust, commercial-grade, full-featured, and Open Source toolchain implementing the Secure Sockets Layer (SSL v2/v3) and Transport Layer Security (TLS v1) protocols as well as a full-strength general purpose cryptography library.
| -| [Osi](https://github.com/coin-or/Osi) | 0.108.11 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | math |
ShowOsi (Open Solver Interface) provides an abstract base class to a generic linear programming (LP) solver, along with derived classes for specific solvers. Many applications may be able to use the Osi to insulate themselves from a specific LP solver. That is, programs written to the OSI standard may be linked to any solver with an OSI interface and should produce correct results. The OSI has been significantly extended compared to its first incarnation. Currently, the OSI supports linear programming solvers and has rudimentary support for integer programming.
| -| [PAPI](https://icl.cs.utk.edu/projects/papi/) | 7.1.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | perf |
ShowPAPI provides the tool designer and application engineer with a consistent interface and methodology for use of the performance counter hardware found in most major microprocessors. PAPI enables software engineers to see, in near real time, the relation between software performance and processor events. In addition Component PAPI provides access to a collection of components that expose performance measurement opportunites across the hardware and software stack.
| -| [PCRE2](https://www.pcre.org/) | 10.43 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | devel |
ShowThe PCRE library is a set of functions that implement regular expression pattern matching using the same syntax and semantics as Perl 5.
| -| [PCRE](https://www.pcre.org/) | 8.45 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | devel |
ShowThe PCRE library is a set of functions that implement regular expression pattern matching using the same syntax and semantics as Perl 5.
| -| [PDT](https://www.cs.uoregon.edu/research/pdt/) | 3.25.2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | perf |
ShowProgram Database Toolkit (PDT) is a framework for analyzing source code written in several programming languages and for making rich program knowledge accessible to developers of static and dynamic analysis tools. PDT implements a standard program representation, the program database (PDB), that can be accessed in a uniform way through a class library supporting common PDB operations.
| -| [PETSc](https://www.mcs.anl.gov/petsc) | 3.23.5 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | numlib |
ShowPETSc, pronounced PET-see (the S is silent), is a suite of data structures and routines for the scalable (parallel) solution of scientific applications modeled by partial differential equations.
| -| [PLUMED](https://www.plumed.org) | 2.9.3 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | chem |
ShowPLUMED is an open source library for free energy calculations in molecular systems which works together with some of the most popular molecular dynamics engines. Free energy calculations can be performed as a function of many order parameters with a particular focus on biological problems, using state of the art methods such as metadynamics, umbrella sampling and Jarzynski-equation based steered MD. The software, written in C++, can be easily interfaced with both fortran and C/C++ codes.
| -| [PMIx](https://pmix.org/) | 5.0.2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowProcess Management for Exascale Environments PMI Exascale (PMIx) represents an attempt to provide an extended version of the PMI standard specifically designed to support clusters up to and including exascale sizes. The overall objective of the project is not to branch the existing pseudo-standard definitions - in fact, PMIx fully supports both of the existing PMI-1 and PMI-2 APIs - but rather to (a) augment and extend those APIs to eliminate some current restrictions that impact scalability, and (b) provide a reference implementation of the PMI-server that demonstrates the desired level of scalability.
| -| [POV-Ray](https://www.povray.org/) | 3.7.0.10 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | vis |
ShowThe Persistence of Vision Raytracer, or POV-Ray, is a ray tracing program which generates images from a text-based scene description, and is available for a variety of computer platforms. POV-Ray is a high-quality, Free Software tool for creating stunning three-dimensional graphics. The source code is available for those wanting to do their own ports.
| -| [PROJ](https://proj.org) | 9.4.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowProgram proj is a standard Unix filter function which converts geographic longitude and latitude coordinates into cartesian coordinates
| -| [PRRTE](https://docs.prrte.org/) | 3.0.5 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowPRRTE is the PMIx Reference RunTime Environment
| -| [Pandoc](https://pandoc.org) | 3.6.2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
ShowIf you need to convert files from one markup format into another, pandoc is your swiss-army knife
| -| [Pango](https://www.pango.org/) | 1.54.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | vis |
ShowPango is a library for laying out and rendering of text, with an emphasis on internationalization. Pango can be used anywhere that text layout is needed, though most of the work on Pango so far has been done in the context of the GTK+ widget toolkit. Pango forms the core of text and font handling for GTK+-2.x.
| -| [ParMETIS](https://karypis.github.io/glaros/projects/gp.html) | 4.0.3 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | math |
ShowParMETIS is an MPI-based parallel library that implements a variety of algorithms for partitioning unstructured graphs, meshes, and for computing fill-reducing orderings of sparse matrices. ParMETIS extends the functionality provided by METIS and includes routines that are especially suited for parallel AMR computations and large scale numerical simulations. The algorithms implemented in ParMETIS are based on the parallel multilevel k-way graph-partitioning, adaptive repartitioning, and parallel multi-constrained partitioning schemes.
| -| [ParaView](https://www.paraview.org) | 5.13.2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | vis |
ShowParaView is a scientific parallel visualizer.
| -| [Paraver](https://tools.bsc.es/paraver) | 4.12.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | perf |
ShowA very powerful performance visualization and analysis tool based on traces that can be used to analyse any information that is expressed on its input trace format. Traces for parallel MPI, OpenMP and other programs can be genereated with Extrae.
| -| [Perl-bundle-CPAN](https://www.perl.org/) | 5.38.2 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | lang |
ShowA set of common packages from CPAN
| -| [Perl](https://www.perl.org/) | 5.38.0 | NVIDIA Tesla | iris | lang |
ShowLarry Wall's Practical Extraction and Report Language Includes a small selection of extra CPAN packages for core functionality.
| -| [Perl](https://www.perl.org/) | 5.38.0
5.38.2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lang |
ShowLarry Wall's Practical Extraction and Report Language Includes a small selection of extra CPAN packages for core functionality.
| -| [Pillow](https://pillow.readthedocs.org/) | 10.4.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | vis |
ShowPillow is the 'friendly PIL fork' by Alex Clark and Contributors. PIL is the Python Imaging Library by Fredrik Lundh and Contributors.
| -| [PnetCDF](https://parallel-netcdf.github.io/) | 1.14.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | data |
ShowParallel netCDF: A Parallel I/O Library for NetCDF File Access
| -| [PostgreSQL](https://www.postgresql.org/) | 16.4 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | data |
ShowPostgreSQL is a powerful, open source object-relational database system. It is fully ACID compliant, has full support for foreign keys, joins, views, triggers, and stored procedures (in multiple languages). It includes most SQL:2008 data types, including INTEGER, NUMERIC, BOOLEAN, CHAR, VARCHAR, DATE, INTERVAL, and TIMESTAMP. It also supports storage of binary large objects, including pictures, sounds, or video. It has native programming interfaces for C/C++, Java, .Net, Perl, Python, Ruby, Tcl, ODBC, among others, and exceptional documentation.
| -| [PuLP](https://github.com/coin-or/pulp) | 2.8.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
ShowPuLP is an LP modeler written in Python. PuLP can generate MPS or LP files and call GLPK, COIN-OR CLP/CBC, CPLEX, GUROBI, MOSEK, XPRESS, CHOCO, MIPCL, SCIP to solve linear problems.
| -| [PyTorch](https://pytorch.org/) | 2.6.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | ai |
ShowTensors and Dynamic neural networks in Python with strong GPU acceleration. PyTorch is a deep learning framework that puts Python first.
| -| [PyYAML](https://github.com/yaml/pyyaml) | 6.0.2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowPyYAML is a YAML parser and emitter for the Python programming language.
| -| [Python-bundle-PyPI](https://python.org/) | 2024.06 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | lang |
ShowBundle of Python packages from PyPI
| -| [Python](https://python.org/) | 3.12.3 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lang |
ShowPython is a programming language that lets you work more quickly and integrate your systems more effectively.
| -| [Qhull](http://www.qhull.org) | 2020.2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | math |
ShowQhull computes the convex hull, Delaunay triangulation, Voronoi diagram, halfspace intersection about a point, furthest-site Delaunay triangulation, and furthest-site Voronoi diagram. The source code runs in 2-d, 3-d, 4-d, and higher dimensions. Qhull implements the Quickhull algorithm for computing the convex hull.
| -| [Qt6](https://qt.io/) | 6.7.2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | devel |
ShowQt is a comprehensive cross-platform C++ application framework.
| -| [R-bundle-Bioconductor](https://bioconductor.org) | 3.20 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | bio |
ShowBioconductor provides tools for the analysis and coprehension of high-throughput genomic data.
| -| [R-bundle-CRAN](https://www.r-project.org/) | 2024.11 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lang |
ShowBundle of R packages from CRAN
| -| [RE2](https://github.com/google/re2) | 2024-07-02 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowRE2 is a fast, safe, thread-friendly alternative to backtracking regular expression engines like those used in PCRE, Perl, and Python. It is a C++ library.
| -| [R](https://www.r-project.org/) | 4.4.2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lang |
ShowR is a free software environment for statistical computing and graphics.
| -| [RapidJSON](https://rapidjson.org) | 1.1.0-20240815 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowA fast JSON parser/generator for C++ with both SAX/DOM style API
| -| [ReFrame](https://github.com/reframe-hpc/reframe) | 4.8.2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | devel |
ShowReFrame is a framework for writing regression tests for HPC systems.
| -| [Rust](https://www.rust-lang.org) | 1.78.0 | NVIDIA Tesla | iris | lang |
ShowRust is a systems programming language that runs blazingly fast, prevents segfaults, and guarantees thread safety.
| -| [Rust](https://www.rust-lang.org) | 1.78.0
1.83.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lang |
ShowRust is a systems programming language that runs blazingly fast, prevents segfaults, and guarantees thread safety.
| -| [SCOTCH](https://www.labri.fr/perso/pelegrin/scotch/) | 7.0.6 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | math |
ShowSoftware package and libraries for sequential and parallel graph partitioning, static mapping, and sparse matrix block ordering, and sequential mesh and hypergraph partitioning.
| -| [SDL2](https://www.libsdl.org/) | 2.30.6 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | lib |
ShowSDL: Simple DirectMedia Layer, a cross-platform multimedia library
| -| [SIONlib](https://www.fz-juelich.de/ias/jsc/EN/Expertise/Support/Software/SIONlib/_node.html) | 1.7.7 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowSIONlib is a scalable I/O library for parallel access to task-local files. The library not only supports writing and reading binary data to or from several thousands of processors into a single or a small number of physical files, but also provides global open and close functions to access SIONlib files in parallel. This package provides a stripped-down installation of SIONlib for use with performance tools (e.g., Score-P), with renamed symbols to avoid conflicts when an application using SIONlib itself is linked against a tool requiring a different SIONlib version.
| -| [SLEPc](https://slepc.upv.es) | 3.23.2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | numlib |
ShowSLEPc (Scalable Library for Eigenvalue Problem Computations) is a software library for the solution of large scale sparse eigenvalue problems on parallel computers. It is an extension of PETSc and can be used for either standard or generalized eigenproblems, with real or complex arithmetic. It can also be used for computing a partial SVD of a large, sparse, rectangular matrix, and to solve quadratic eigenvalue problems.
| -| [SQLite](https://www.sqlite.org/) | 3.45.3 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | devel |
ShowSQLite: SQL Database Engine in a C Library
| -| [SWIG](http://www.swig.org/) | 4.2.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | devel |
ShowSWIG is a software development tool that connects programs written in C and C++ with a variety of high-level programming languages.
| -| [ScaFaCoS](http://www.scafacos.de/) | 1.0.4 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | math |
ShowScaFaCoS is a library of scalable fast coulomb solvers.
| -| [ScaLAPACK](https://www.netlib.org/scalapack/) | 2.2.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | numlib |
ShowThe ScaLAPACK (or Scalable LAPACK) library includes a subset of LAPACK routines redesigned for distributed memory MIMD parallel computers.
| -| [Scalasca](https://www.scalasca.org/) | 2.6.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | perf |
ShowScalasca is a software tool that supports the performance optimization of parallel programs by measuring and analyzing their runtime behavior. The analysis identifies potential performance bottlenecks -- in particular those concerning communication and synchronization -- and offers guidance in exploring their causes.
| -| [SciPy-bundle](https://python.org/) | 2024.05 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | lang |
ShowBundle of Python packages for scientific software
| -| [Score-P](https://www.score-p.org) | 8.4 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | perf |
ShowThe Score-P measurement infrastructure is a highly scalable and easy-to-use tool suite for profiling, event tracing, and online analysis of HPC applications.
| -| [Siesta](https://siesta-project.org/siesta/About/overview.html) | 5.4.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | phys |
ShowSIESTA is both a method and its computer program implementation, to perform efficient electronic structure calculations and ab initio molecular dynamics simulations of molecules and solids.
| -| [Simple-DFTD3](https://dftd3.readthedocs.io) | 1.2.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | chem |
ShowReimplementation of the D3 dispersion correction. The s-dftd3 project aims to provide a user-friendly and uniform interface to the D3 dispersion model and for the calculation of DFT-D3 dispersion corrections.
| -| [Spack](https://spack.io/) | 1.1.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | devel |
ShowSpack is a package manager for supercomputers, Linux, and macOS. It makes installing scientific software easy. With Spack, you can build a package with multiple versions, configurations, platforms, and compilers, and all of these builds can coexist on the same machine.
| -| [Spark](https://spark.apache.org) | 4.0.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | devel |
ShowSpark is Hadoop MapReduce done in memory
| -| [SuiteSparse](https://faculty.cse.tamu.edu/davis/suitesparse.html) | 7.10.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | numlib |
ShowSuiteSparse is a collection of libraries to manipulate sparse matrices.
| -| [SuperLU_DIST](https://crd-legacy.lbl.gov/~xiaoye/SuperLU/) | 9.1.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | numlib |
ShowSuperLU is a general purpose library for the direct solution of large, sparse, nonsymmetric systems of linear equations on high performance machines.
| -| [Szip](https://docs.hdfgroup.org/archive/support/doc_resource/SZIP/index.html) | 2.1.1 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | tools |
ShowSzip compression software, providing lossless compression of scientific data
| -| [TOML-Fortran](https://github.com/toml-f/toml-f) | 0.4.2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
ShowTOML parser for Fortran projects
| -| [Tcl](https://www.tcl.tk/) | 8.6.14 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lang |
ShowTcl (Tool Command Language) is a very powerful but easy to learn dynamic programming language, suitable for a very wide range of uses, including web and desktop applications, networking, administration, testing and many more.
| -| [Tk](https://www.tcl.tk/) | 8.6.14 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | vis |
ShowTk is an open source, cross-platform widget toolchain that provides a library of basic elements for building a graphical user interface (GUI) in many different programming languages.
| -| [Tkinter](https://python.org/) | 3.12.3 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lang |
ShowTkinter module, built with the Python buildsystem
| -| [UCC-CUDA](https://www.openucx.org/) | 1.3.0 | NVIDIA Tesla | iris | lib |
ShowUCC (Unified Collective Communication) is a collective communication operations API and library that is flexible, complete, and feature-rich for current and emerging programming models and runtimes. This module adds the UCC CUDA support.
| -| [UCC](https://www.openucx.org/) | 1.3.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowUCC (Unified Collective Communication) is a collective communication operations API and library that is flexible, complete, and feature-rich for current and emerging programming models and runtimes.
| -| [UCX-CUDA](http://www.openucx.org/) | 1.16.0 | NVIDIA Tesla | iris | lib |
ShowUnified Communication X An open-source production grade communication framework for data centric and high-performance applications This module adds the UCX CUDA support.
| -| [UCX](https://www.openucx.org/) | 1.16.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowUnified Communication X An open-source production grade communication framework for data centric and high-performance applications
| -| [UDUNITS](https://www.unidata.ucar.edu/software/udunits/) | 2.2.28 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | phys |
ShowUDUNITS supports conversion of unit specifications between formatted and binary forms, arithmetic manipulation of units, and conversion of values between compatible scales of measurement.
| -| [UnZip](http://www.info-zip.org/UnZip.html) | 6.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
ShowUnZip is an extraction utility for archives compressed in .zip format (also called "zipfiles"). Although highly compatible both with PKWARE's PKZIP and PKUNZIP utilities for MS-DOS and with Info-ZIP's own Zip program, our primary objectives have been portability and non-MSDOS functionality.
| -| [VMD](https://www.ks.uiuc.edu/Research/vmd) | 1.9.4a57 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | vis |
ShowVMD is a molecular visualization program for displaying, animating, and analyzing large biomolecular systems using 3-D graphics and built-in scripting.
| -| [VTK](https://www.vtk.org) | 9.3.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | vis |
ShowThe Visualization Toolkit (VTK) is an open-source, freely available software system for 3D computer graphics, image processing and visualization. VTK consists of a C++ class library and several interpreted interface layers including Tcl/Tk, Java, and Python. VTK supports a wide variety of visualization algorithms including: scalar, vector, tensor, texture, and volumetric methods; and advanced modeling techniques such as: implicit modeling, polygon reduction, mesh smoothing, cutting, contouring, and Delaunay triangulation.
| -| [Valgrind](https://valgrind.org) | 3.24.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | debugger |
ShowValgrind: Debugging and profiling tools
| -| [Voro++](http://math.lbl.gov/voro++/) | 0.4.6 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | math |
ShowVoro++ is a software library for carrying out three-dimensional computations of the Voronoi tessellation. A distinguishing feature of the Voro++ library is that it carries out cell-based calculations, computing the Voronoi cell for each particle individually. It is particularly well-suited for applications that rely on cell-based statistics, where features of Voronoi cells (eg. volume, centroid, number of faces) can be used to analyze a system of particles.
| -| [Wayland](https://wayland.freedesktop.org/) | 1.23.0 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | vis |
ShowWayland is a project to define a protocol for a compositor to talk to its clients as well as a library implementation of the protocol. The compositor can be a standalone display server running on Linux kernel modesetting and evdev input devices, an X application, or a wayland client itself. The clients can be traditional applications, X servers (rootless or fullscreen) or other display servers.
| -| [X11](https://www.x.org) | 20240607 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | vis |
ShowThe X Window System (X11) is a windowing system for bitmap displays
| -| [XZ](https://tukaani.org/xz/) | 5.4.5 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
Showxz: XZ utilities
| -| [Xerces-C++](https://xerces.apache.org/xerces-c/) | 3.2.5 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowXerces-C++ is a validating XML parser written in a portable subset of C++. Xerces-C++ makes it easy to give your application the ability to read and write XML data. A shared library is provided for parsing, generating, manipulating, and validating XML documents using the DOM, SAX, and SAX2 APIs.
| -| [Xvfb](https://www.x.org/releases/X11R7.6/doc/man/man1/Xvfb.1.xhtml) | 21.1.14 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | vis |
ShowXvfb is an X server that can run on machines with no display hardware and no physical input devices. It emulates a dumb framebuffer using virtual memory.
| -| [Yasm](https://www.tortall.net/projects/yasm/) | 1.3.0 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | lang |
ShowYasm: Complete rewrite of the NASM assembler with BSD license
| -| [Z3](https://github.com/Z3Prover/z3) | 4.13.0 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | tools |
ShowZ3 is a theorem prover from Microsoft Research with support for bitvectors, booleans, arrays, floating point numbers, strings, and other data types. This module includes z3-solver, the Python interface of Z3.
| -| [ZeroMQ](https://www.zeromq.org/) | 4.3.5 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | devel |
ShowZeroMQ looks like an embeddable networking library but acts like a concurrency framework. It gives you sockets that carry atomic messages across various transports like in-process, inter-process, TCP, and multicast. You can connect sockets N-to-N with patterns like fanout, pub-sub, task distribution, and request-reply. It's fast enough to be the fabric for clustered products. Its asynchronous I/O model gives you scalable multicore applications, built as asynchronous message-processing tasks. It has a score of language APIs and runs on most operating systems.
| -| [archspec](https://github.com/archspec/archspec) | 0.2.5 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | tools |
ShowA library for detecting, labeling, and reasoning about microarchitectures
| -| [arpack-ng](https://github.com/opencollab/arpack-ng) | 3.9.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | numlib |
ShowARPACK is a collection of Fortran77 subroutines designed to solve large scale eigenvalue problems.
| -| [arrow-R](https://cran.r-project.org/web/packages/arrow) | 17.0.0.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
ShowR interface to the Apache Arrow C++ library
| -| [assimp](https://github.com/assimp/assimp) | 5.4.3 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | vis |
ShowOpen Asset Import Library (assimp) is a library to import and export various 3d-model-formats including scene-post-processing to generate missing render data.
| -| [at-spi2-atk](https://wiki.gnome.org/Accessibility) | 2.38.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | vis |
ShowAT-SPI 2 toolkit bridge
| -| [at-spi2-core](https://wiki.gnome.org/Accessibility) | 2.54.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | vis |
ShowAssistive Technology Service Provider Interface.
| -| [binutils](https://directory.fsf.org/project/binutils/) | 2.40 | NVIDIA Tesla | iris | tools |
Showbinutils: GNU binary utilities
| -| [binutils](https://directory.fsf.org/project/binutils/) | 2.40
2.42 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
Showbinutils: GNU binary utilities
| -| [build](https://github.com/pypa/build) | 1.2.2.post1 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | devel |
ShowA simple, correct Python build frontend.
| -| [bzip2](https://sourceware.org/bzip2) | 1.0.8 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
Showbzip2 is a freely available, patent free, high-quality data compressor. It typically compresses files to within 10% to 15% of the best available techniques (the PPM family of statistical compressors), whilst being around twice as fast at compression and six times faster at decompression.
| -| [cURL](https://curl.haxx.se) | 8.7.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
Showlibcurl is a free and easy-to-use client-side URL transfer library, supporting DICT, FILE, FTP, FTPS, Gopher, HTTP, HTTPS, IMAP, IMAPS, LDAP, LDAPS, POP3, POP3S, RTMP, RTSP, SCP, SFTP, SMTP, SMTPS, Telnet and TFTP. libcurl supports SSL certificates, HTTP POST, HTTP PUT, FTP uploading, HTTP form based upload, proxies, cookies, user+password authentication (Basic, Digest, NTLM, Negotiate, Kerberos), file transfer resume, http proxy tunneling and more.
| -| [cairo](https://cairographics.org) | 1.18.0 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | vis |
ShowCairo is a 2D graphics library with support for multiple output devices. Currently supported output targets include the X Window System (via both Xlib and XCB), Quartz, Win32, image buffers, PostScript, PDF, and SVG file output. Experimental backends include OpenGL, BeOS, OS/2, and DirectFB
| -| [cffi](https://cffi.readthedocs.io/en/latest/) | 1.16.0 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | tools |
ShowC Foreign Function Interface for Python. Interact with almost any C code from Python, based on C-like declarations that you can often copy-paste from header files or documentation.
| -| [cryptography](https://github.com/pyca/cryptography) | 42.0.8 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | tools |
Showcryptography is a package designed to expose cryptographic primitives and recipes to Python developers.
| -| [double-conversion](https://github.com/google/double-conversion) | 3.3.0 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | lib |
ShowEfficient binary-decimal and decimal-binary conversion routines for IEEE doubles.
| -| [elfutils](https://elfutils.org/) | 0.191 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowThe elfutils project provides libraries and tools for ELF files and DWARF data.
| -| [expat](https://libexpat.github.io) | 2.6.2 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | tools |
ShowExpat is an XML parser library written in C. It is a stream-oriented parser in which an application registers handlers for things the parser might find in the XML document (like start tags).
| -| [expecttest](https://github.com/ezyang/expecttest) | 0.2.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
ShowThis library implements expect tests (also known as "golden" tests). Expect tests are a method of writing tests where instead of hard-coding the expected output of a test, you run the test to get the output, and the test framework automatically populates the expected output. If the output of the test changes, you can rerun the test with the environment variable EXPECTTEST_ACCEPT=1 to automatically update the expected output.
| -| [ffnvcodec](https://git.videolan.org/?p=ffmpeg/nv-codec-headers.git) | 12.2.72.0 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | lib |
ShowFFmpeg nvidia headers. Adds support for nvenc and nvdec. Requires Nvidia GPU and drivers to be present (picked up dynamically).
| -| [flex](http://flex.sourceforge.net/) | 2.6.4 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lang |
ShowFlex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner, sometimes called a tokenizer, is a program which recognizes lexical patterns in text.
| -| [flex](https://github.com/westes/flex) | 2.6.4 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | lang |
ShowFlex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner, sometimes called a tokenizer, is a program which recognizes lexical patterns in text.
| -| [flit](https://github.com/pypa/flit) | 3.9.0 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | tools |
ShowA simple packaging tool for simple packages.
| -| [flook](https://github.com/ElectronicStructureLibrary/flook) | 0.8.4 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | data |
ShowThe fortran-Lua-hook library.
| -| [fontconfig](https://www.freedesktop.org/wiki/Software/fontconfig/) | 2.15.0 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | vis |
ShowFontconfig is a library designed to provide system-wide font configuration, customization and application access.
| -| [fonttools](https://python-markdown.github.io/) | 4.53.1 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | devel |
ShowfontTools is a library for manipulating fonts, written in Python. The project includes the TTX tool, that can convert TrueType and OpenType fonts to and from an XML text format, which is also called TTX. It supports TrueType, OpenType, AFM and to an extent Type 1 and some Mac-specific formats.
| -| [foss](https://docs.easybuild.io/common-toolchains/#common_toolchains_foss) | 2024a | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | toolchain |
ShowGNU Compiler Collection (GCC) based compiler toolchain, including OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK.
| -| [freetype](https://www.freetype.org) | 2.13.2 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | vis |
ShowFreeType 2 is a software font engine that is designed to be small, efficient, highly customizable, and portable while capable of producing high-quality output (glyph images). It can be used in graphics libraries, display servers, font conversion tools, text image generation tools, and many other products as well.
| -| [gettext](https://www.gnu.org/software/gettext/) | 0.22.5 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | tools |
ShowGNU 'gettext' is an important step for the GNU Translation Project, as it is an asset on which we may build many other steps. This package offers to programmers, translators, and even users, a well integrated set of tools and documentation
| -| [gfbf]((none)) | 2024a | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | toolchain |
ShowGNU Compiler Collection (GCC) based compiler toolchain, including FlexiBLAS (BLAS and LAPACK support) and (serial) FFTW.
| -| [giflib](http://giflib.sourceforge.net/) | 5.2.1 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | lib |
Showgiflib is a library for reading and writing gif images. It is API and ABI compatible with libungif which was in wide use while the LZW compression algorithm was patented.
| -| [git](https://git-scm.com) | 2.45.1 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | tools |
ShowGit is a free and open source distributed version control system designed to handle everything from small to very large projects with speed and efficiency.
| -| [gmpy2](https://github.com/aleaxit/gmpy) | 2.2.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | math |
ShowGMP/MPIR, MPFR, and MPC interface to Python 2.6+ and 3.x
| -| [gmsh](https://gmsh.info/) | 4.14.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | math |
ShowGmsh is a 3D finite element grid generator with a build-in CAD engine and post-processor.
| -| [gnuplot](http://gnuplot.sourceforge.net) | 6.0.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | vis |
ShowPortable interactive, function plotting utility
| -| [gocryptfs](https://nuetzlich.net/gocryptfs/) | 2.5.4 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
ShowAn encrypted overlay filesystem written in Go and built on top the go-fuse FUSE library.
| -| [gompi]((none)) | 2024a | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | toolchain |
ShowGNU Compiler Collection (GCC) based compiler toolchain, including OpenMPI for MPI support.
| -| [googletest](https://github.com/google/googletest) | 1.15.2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
ShowGoogle's framework for writing C++ tests on a variety of platforms
| -| [gperf](https://www.gnu.org/software/gperf/) | 3.1 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | devel |
ShowGNU gperf is a perfect hash function generator. For a given list of strings, it produces a hash function and hash table, in form of C or C++ code, for looking up a value depending on the input string. The hash function is perfect, which means that the hash table has no collisions, and the hash table lookup needs a single string comparison only.
| -| [graphite2](https://scripts.sil.org/cms/scripts/page.php?site_id=projects&item_id=graphite_home) | 1.3.14 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | lib |
ShowGraphite is a "smart font" system developed specifically to handle the complexities of lesser-known languages of the world.
| -| [groff](https://www.gnu.org/software/groff) | 1.23.0 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | tools |
ShowGroff (GNU troff) is a typesetting system that reads plain text mixed with formatting commands and produces formatted output.
| -| [grpcio](https://grpc.io/) | 1.70.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowgRPC is a modern, open source, high-performance remote procedure call (RPC) framework that can run anywhere. gRPC enables client and server applications to communicate transparently, and simplifies the building of connected systems.
| -| [gzip](https://www.gnu.org/software/gzip/) | 1.13 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
Showgzip (GNU zip) is a popular data compression program as a replacement for compress
| -| [h5py](https://www.h5py.org/) | 3.12.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | data |
ShowHDF5 for Python (h5py) is a general-purpose Python interface to the Hierarchical Data Format library, version 5. HDF5 is a versatile, mature scientific software library designed for the fast, flexible storage of enormous amounts of data.
| -| [hatchling](https://hatch.pypa.io) | 1.24.2 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | tools |
ShowExtensible, standards compliant build backend used by Hatch, a modern, extensible Python project manager.
| -| [help2man](https://www.gnu.org/software/help2man/) | 1.49.3 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | tools |
Showhelp2man produces simple manual pages from the '--help' and '--version' output of other commands.
| -| [hwloc](https://www.open-mpi.org/projects/hwloc/) | 2.10.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | system |
ShowThe Portable Hardware Locality (hwloc) software package provides a portable abstraction (across OS, versions, architectures, ...) of the hierarchical topology of modern architectures, including NUMA memory nodes, sockets, shared caches, cores and simultaneous multithreading. It also gathers various system attributes such as cache and memory information as well as the locality of I/O devices such as network interfaces, InfiniBand HCAs or GPUs. It primarily aims at helping applications with gathering information about modern computing hardware so as to exploit it accordingly and efficiently.
| -| [hypothesis](https://github.com/HypothesisWorks/hypothesis) | 6.103.1 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | tools |
ShowHypothesis is an advanced testing library for Python. It lets you write tests which are parametrized by a source of examples, and then generates simple and comprehensible examples that make your tests fail. This lets you find more bugs in your code with less work.
| -| [iimpi](https://software.intel.com/parallel-studio-xe) | 2024a | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | toolchain |
ShowIntel C/C++ and Fortran compilers, alongside Intel MPI.
| -| [imkl-FFTW](https://software.intel.com/content/www/us/en/develop/tools/oneapi/components/onemkl.html) | 2024.2.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | numlib |
ShowFFTW interfaces using Intel oneAPI Math Kernel Library
| -| [imkl](https://software.intel.com/content/www/us/en/develop/tools/oneapi/components/onemkl.html) | 2024.2.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | numlib |
ShowIntel oneAPI Math Kernel Library
| -| [impi](https://software.intel.com/content/www/us/en/develop/tools/mpi-library.html) | 2021.13.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | mpi |
ShowIntel MPI Library, compatible with MPICH ABI
| -| [intel-compilers](https://software.intel.com/content/www/us/en/develop/tools/oneapi/hpc-toolkit.html) | 2024.2.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | compiler |
ShowIntel C, C++ & Fortran compilers (classic and oneAPI)
| -| [intel](https://docs.easybuild.io/common-toolchains/#common_toolchains_overview_intel) | 2024a | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | toolchain |
ShowCompiler toolchain including Intel compilers, Intel MPI and Intel Math Kernel Library (MKL).
| -| [intltool](https://freedesktop.org/wiki/Software/intltool/) | 0.51.0 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | devel |
Showintltool is a set of tools to centralize translation of many different file formats using GNU gettext-compatible PO files.
| -| [jbigkit](https://www.cl.cam.ac.uk/~mgk25/jbigkit/) | 2.1 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | vis |
ShowJBIG-KIT is a software implementation of the JBIG1 data compression standard (ITU-T T.82), which was designed for bi-level image data, such as scanned documents.
| -| [jedi](https://github.com/davidhalter/jedi) | 0.19.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
ShowJedi - an awesome autocompletion, static analysis and refactoring library for Python.
| -| [json-c](https://github.com/json-c/json-c) | 0.17 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowJSON-C implements a reference counting object model that allows you to easily construct JSON objects in C, output them as JSON formatted strings and parse JSON formatted strings back into the C representation of JSON objects.
| -| [json-fortran](https://github.com/jacobwilliams/json-fortran) | 9.0.3 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowJSON-Fortran: A Modern Fortran JSON API
| -| [jxrlib](https://github.com/4creators/jxrlib) | 2019.10.9 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowOpen source implementation of jpegxr
| -| [kim-api](https://openkim.org/) | 2.4.1 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | chem |
ShowOpen Knowledgebase of Interatomic Models. KIM is an API and OpenKIM is a collection of interatomic models (potentials) for atomistic simulations. This is a library that can be used by simulation programs to get access to the models in the OpenKIM database. This EasyBuild only installs the API, the models can be installed with the package openkim-models, or the user can install them manually by running kim-api-collections-management install user MODELNAME or kim-api-collections-management install user OpenKIM to install them all.
| -| [libGLU](https://gitlab.freedesktop.org/mesa/glu) | 9.0.3 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | vis |
ShowThe OpenGL Utility Library (GLU) is a computer graphics library for OpenGL.
| -| [libGridXC](https://gitlab.com/siesta-project/libraries/libgridxc) | 2.0.2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | phys |
ShowA library to compute the exchange and correlation energy and potential in spherical (i.e. atoms) or periodic systems.
| -| [libPSML](https://gitlab.com/siesta-project/libraries/libpsml) | 2.1.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | data |
ShowA library to handle pseudopotentials in PSML format
| -| [libarchive](https://www.libarchive.org/) | 3.7.4 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
ShowMulti-format archive and compression library
| -| [libcerf](https://jugit.fz-juelich.de/mlz/libcerf) | 2.4 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | math |
Showlibcerf is a self-contained numeric library that provides an efficient and accurate implementation of complex error functions, along with Dawson, Faddeeva, and Voigt functions.
| -| [libde265](https://github.com/strukturag/libde265) | 1.0.15 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | tools |
Showlibde265 is an open source implementation of the h.265 video codec
| -| [libdeflate](https://github.com/ebiggers/libdeflate) | 1.20 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | system |
ShowHeavily optimized library for DEFLATE/zlib/gzip compression and decompression.
| -| [libdrm](https://dri.freedesktop.org) | 2.4.122 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | lib |
ShowDirect Rendering Manager runtime library.
| -| [libepoxy](https://github.com/anholt/libepoxy) | 1.5.10 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowEpoxy is a library for handling OpenGL function pointer management for you
| -| [libevent](https://libevent.org/) | 2.1.12 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowThe libevent API provides a mechanism to execute a callback function when a specific event occurs on a file descriptor or after a timeout has been reached. Furthermore, libevent also support callbacks due to signals or regular timeouts.
| -| [libfabric](https://ofiwg.github.io/libfabric/) | 1.21.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowLibfabric is a core component of OFI. It is the library that defines and exports the user-space API of OFI, and is typically the only software that applications deal with directly. It works in conjunction with provider libraries, which are often integrated directly into libfabric.
| -| [libfdf](https://gitlab.com/siesta-project/libraries/libfdf) | 0.5.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | data |
ShowLibFDF is the official implementation of the FDF specifications for use in client codes.
| -| [libffi](https://sourceware.org/libffi/) | 3.4.5 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowThe libffi library provides a portable, high level programming interface to various calling conventions. This allows a programmer to call any function specified by a call interface description at run-time.
| -| [libgd](https://libgd.github.io) | 2.3.3 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowGD is an open source code library for the dynamic creation of images by programmers.
| -| [libgeotiff](https://directory.fsf.org/wiki/Libgeotiff) | 1.7.3 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowLibrary for reading and writing coordinate system information from/to GeoTIFF files
| -| [libgit2](https://libgit2.org/) | 1.8.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | devel |
Showlibgit2 is a portable, pure C implementation of the Git core methods provided as a re-entrant linkable library with a solid API, allowing you to write native speed custom Git applications in any language which supports C bindings.
| -| [libglvnd](https://gitlab.freedesktop.org/glvnd/libglvnd) | 1.7.0 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | lib |
Showlibglvnd is a vendor-neutral dispatch layer for arbitrating OpenGL API calls between multiple vendors.
| -| [libheif](https://github.com/strukturag/libheif) | 1.19.5 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | tools |
Showlibheif is an HEIF and AVIF file format decoder and encoder
| -| [libiconv](https://www.gnu.org/software/libiconv) | 1.17 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | lib |
ShowLibiconv converts from one character encoding to another through Unicode conversion
| -| [libjpeg-turbo](https://sourceforge.net/projects/libjpeg-turbo/) | 3.0.1 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | lib |
Showlibjpeg-turbo is a fork of the original IJG libjpeg which uses SIMD to accelerate baseline JPEG compression and decompression. libjpeg is a library that implements JPEG image encoding, decoding and transcoding.
| -| [libogg](https://xiph.org/ogg/) | 1.3.5 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowOgg is a multimedia container format, and the native file and stream format for the Xiph.org multimedia codecs.
| -| [libopus](https://www.opus-codec.org/) | 1.5.2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowOpus is a totally open, royalty-free, highly versatile audio codec. Opus is unmatched for interactive speech and music transmission over the Internet, but is also intended for storage and streaming applications. It is standardized by the Internet Engineering Task Force (IETF) as RFC 6716 which incorporated technology from Skype’s SILK codec and Xiph.Org’s CELT codec.
| -| [libpciaccess](https://cgit.freedesktop.org/xorg/lib/libpciaccess/) | 0.18.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | system |
ShowGeneric PCI access library.
| -| [libpng](http://www.libpng.org/pub/png/libpng.html) | 1.6.43 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | lib |
Showlibpng is the official PNG reference library
| -| [libreadline](https://tiswww.case.edu/php/chet/readline/rltop.html) | 8.2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowThe GNU Readline library provides a set of functions for use by applications that allow users to edit command lines as they are typed in. Both Emacs and vi editing modes are available. The Readline library includes additional functions to maintain a list of previously-entered command lines, to recall and perhaps reedit those lines, and perform csh-like history expansion on previous commands.
| -| [libsndfile](http://www.mega-nerd.com/libsndfile) | 1.2.2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowLibsndfile is a C library for reading and writing files containing sampled sound (such as MS Windows WAV and the Apple/SGI AIFF format) through one standard library interface.
| -| [libsodium](https://doc.libsodium.org/) | 1.0.20 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowSodium is a modern, easy-to-use software library for encryption, decryption, signatures, password hashing and more.
| -| [libtirpc](https://sourceforge.net/projects/libtirpc/) | 1.3.5 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowLibtirpc is a port of Suns Transport-Independent RPC library to Linux.
| -| [libtool](https://www.gnu.org/software/libtool) | 2.4.7 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | lib |
ShowGNU libtool is a generic library support script. Libtool hides the complexity of using shared libraries behind a consistent, portable interface.
| -| [libunwind](https://www.nongnu.org/libunwind/) | 1.8.1 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | lib |
ShowThe primary goal of libunwind is to define a portable and efficient C programming interface (API) to determine the call-chain of a program. The API additionally provides the means to manipulate the preserved (callee-saved) state of each call-frame and to resume execution at any point in the call-chain (non-local goto). The API supports both local (same-process) and remote (across-process) operation. As such, the API is useful in a number of applications
| -| [libvorbis](https://xiph.org/vorbis/) | 1.3.7 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowOgg Vorbis is a fully open, non-proprietary, patent-and-royalty-free, general-purpose compressed audio format
| -| [libwebp](https://developers.google.com/speed/webp/) | 1.4.0 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | lib |
ShowWebP is a modern image format that provides superior lossless and lossy compression for images on the web. Using WebP, webmasters and web developers can create smaller, richer images that make the web faster.
| -| [libxc](https://libxc.gitlab.io) | 6.2.2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | chem |
ShowLibxc is a library of exchange-correlation functionals for density-functional theory. The aim is to provide a portable, well tested and reliable set of exchange and correlation functionals.
| -| [libxml2](https://gitlab.gnome.org/GNOME/libxml2/-/wikis) | 2.12.7 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowLibxml2 is the XML C parser and toolchain developed for the Gnome project (but usable outside of the Gnome platform).
| -| [libxslt](https://gitlab.gnome.org/GNOME/libxslt/-/wikis) | 1.1.42 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowLibxslt is the XSLT C library developed for the GNOME project (but usable outside of the Gnome platform).
| -| [libyaml](https://pyyaml.org/wiki/LibYAML) | 0.2.5 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowLibYAML is a YAML parser and emitter written in C.
| -| [lit](https://llvm.org/docs/CommandGuide/lit.html) | 18.1.8 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | tools |
Showlit is a portable tool for executing LLVM and Clang style test suites, summarizing their results, and providing indication of failures.
| -| [lxml](https://lxml.de/) | 5.3.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowThe lxml XML toolkit is a Pythonic binding for the C libraries libxml2 and libxslt.
| -| [lz4](https://lz4.github.io/lz4/) | 1.9.4 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowLZ4 is lossless compression algorithm, providing compression speed at 400 MB/s per core. It features an extremely fast decoder, with speed in multiple GB/s per core.
| -| [make](https://www.gnu.org/software/make/make.html) | 4.4.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | devel |
ShowGNU version of make utility
| -| [makeinfo](https://www.gnu.org/software/texinfo/) | 7.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | devel |
Showmakeinfo is part of the Texinfo project, the official documentation format of the GNU project.
| -| [maturin](https://github.com/pyo3/maturin) | 1.6.0 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | tools |
ShowThis project is meant as a zero configuration replacement for setuptools-rust and milksnake. It supports building wheels for python 3.5+ on windows, linux, mac and freebsd, can upload them to pypi and has basic pypy and graalpy support.
| -| [mctc-lib](https://grimme-lab.github.io/mctc-lib) | 0.3.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | chem |
ShowCommon tool chain for working with molecular structure data in various applications. This library provides a unified way to perform operations on molecular structure data, like reading and writing to common geometry file formats.
| -| [meson-python](https://github.com/mesonbuild/meson-python) | 0.16.0 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | tools |
ShowPython build backend (PEP 517) for Meson projects
| -| [mpi4py](https://github.com/mpi4py/mpi4py) | 4.0.1 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | lib |
ShowMPI for Python (mpi4py) provides bindings of the Message Passing Interface (MPI) standard for the Python programming language, allowing any Python program to exploit multiple processors.
| -| [mstore](https://github.com/grimme-lab/mstore) | 0.3.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | chem |
ShowMolecular structure store for testing
| -| [ncurses](https://www.gnu.org/software/ncurses/) | 6.5 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | devel |
ShowThe Ncurses (new curses) library is a free software emulation of curses in System V Release 4.0, and more. It uses Terminfo format, supports pads and color and multiple highlights and forms characters and function-key mapping, and has all the other SYSV-curses enhancements over BSD Curses.
| -| [netCDF-C++4](https://www.unidata.ucar.edu/software/netcdf/) | 4.3.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | data |
ShowNetCDF (network Common Data Form) is a set of software libraries and machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data.
| -| [netCDF-Fortran](https://www.unidata.ucar.edu/software/netcdf/) | 4.6.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | data |
ShowNetCDF (network Common Data Form) is a set of software libraries and machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data.
| -| [netCDF](https://www.unidata.ucar.edu/software/netcdf/) | 4.9.2 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | data |
ShowNetCDF (network Common Data Form) is a set of software libraries and machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data.
| -| [netcdf4-python](https://unidata.github.io/netcdf4-python/) | 1.7.1.post2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | data |
ShowPython/numpy interface to netCDF.
| -| [nettle](https://www.lysator.liu.se/~nisse/nettle/) | 3.10 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowNettle is a cryptographic library that is designed to fit easily in more or less any context: In crypto toolkits for object-oriented languages (C++, Python, Pike, ...), in applications like LSH or GNUPG, or even in kernel space.
| -| [networkx](https://pypi.python.org/pypi/networkx) | 3.4.2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
ShowNetworkX is a Python package for the creation, manipulation, and study of the structure, dynamics, and functions of complex networks.
| -| [nlohmann_json](https://github.com/nlohmann/json) | 3.11.3 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowJSON for Modern C++
| -| [nodejs](https://nodejs.org) | 20.13.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lang |
ShowNode.js is a platform built on Chrome's JavaScript runtime for easily building fast, scalable network applications. Node.js uses an event-driven, non-blocking I/O model that makes it lightweight and efficient, perfect for data-intensive real-time applications that run across distributed devices.
| -| [numactl](https://github.com/numactl/numactl) | 2.0.16 | NVIDIA Tesla | iris | tools |
ShowThe numactl program allows you to run your application program on specific cpu's and memory nodes. It does this by supplying a NUMA memory policy to the operating system before running your program. The libnuma library provides convenient ways for you to add NUMA memory policies into your own program.
| -| [numactl](https://github.com/numactl/numactl) | 2.0.18 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
ShowThe numactl program allows you to run your application program on specific cpu's and memory nodes. It does this by supplying a NUMA memory policy to the operating system before running your program. The libnuma library provides convenient ways for you to add NUMA memory policies into your own program.
| -| [occt](https://www.opencascade.com/) | 7.8.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | cae |
ShowOpen CASCADE Technology (OCCT) is an object-oriented C++ class library designed for rapid production of sophisticated domain-specific CAD/CAM/CAE applications.
| -| [optree](https://optree.readthedocs.io/en/latest/) | 0.14.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowOptimized PyTree Utilities
| -| [parameterized](https://github.com/wolever/parameterized) | 0.9.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
ShowParameterized testing with any Python test framework
| -| [patchelf](https://github.com/NixOS/patchelf) | 0.18.0 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | tools |
ShowPatchELF is a small utility to modify the dynamic linker and RPATH of ELF executables.
| -| [petsc4py](https://gitlab.com/petsc/petsc) | 3.23.5 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
Showpetsc4py are Python bindings for PETSc, the Portable, Extensible Toolchain for Scientific Computation.
| -| [pixman](http://www.pixman.org/) | 0.43.4 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | vis |
ShowPixman is a low-level software library for pixel manipulation, providing features such as image compositing and trapezoid rasterization. Important users of pixman are the cairo graphics library and the X server.
| -| [pkgconf](https://github.com/pkgconf/pkgconf) | 1.8.0
2.2.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | devel |
Showpkgconf is a program which helps to configure compiler and linker flags for development libraries. It is similar to pkg-config from freedesktop.org.
| -| [poetry](https://python-poetry.org) | 1.8.3 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | tools |
ShowPython packaging and dependency management made easy. Poetry helps you declare, manage and install dependencies of Python projects, ensuring you have the right stack everywhere.
| -| [protobuf-python](https://github.com/google/protobuf/) | 5.28.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | devel |
ShowPython Protocol Buffers runtime library.
| -| [protobuf](https://github.com/protocolbuffers/protobuf) | 28.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | devel |
ShowProtocol Buffers (a.k.a., protobuf) are Google's language-neutral, platform-neutral, extensible mechanism for serializing structured data.
| -| [psutil](https://github.com/giampaolo/psutil) | 6.0.0 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | lib |
ShowA cross-platform process and system utilities module for Python
| -| [pybind11](https://pybind11.readthedocs.io) | 2.12.0 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | lib |
Showpybind11 is a lightweight header-only library that exposes C++ types in Python and vice versa, mainly to create Python bindings of existing C++ code.
| -| [pytest-flakefinder](https://github.com/dropbox/pytest-flakefinder) | 1.1.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
ShowRuns tests multiple times to expose flakiness.
| -| [pytest-rerunfailures](https://github.com/pytest-dev/pytest-rerunfailures) | 15.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
Showpytest plugin to re-run tests to eliminate flaky failures.
| -| [pytest-shard](https://github.com/AdamGleave/pytest-shard) | 0.1.2 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
Showpytest plugin to support parallelism across multiple machines. Shards tests based on a hash of their test name enabling easy parallelism across machines, suitable for a wide variety of continuous integration services. Tests are split at the finest level of granularity, individual test cases, enabling parallelism even if all of your tests are in a single file (or even single parameterized test method).
| -| [pytest-subtests](https://github.com/pytest-dev/pytest-subtests) | 0.13.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
Showunittest subTest() support and subtests fixture.
| -| [re2c](https://re2c.org) | 3.1 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | tools |
Showre2c is a free and open-source lexer generator for C and C++. Its main goal is generating fast lexers: at least as fast as their reasonably optimized hand-coded counterparts. Instead of using traditional table-driven approach, re2c encodes the generated finite state automata directly in the form of conditional jumps and comparisons.
| -| [ruamel.yaml](https://sourceforge.net/projects/ruamel-yaml) | 0.18.6 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lang |
Showruamel.yaml is a YAML 1.2 loader/dumper package for Python.
| -| [scikit-build](https://scikit-build.readthedocs.io/en/latest) | 0.17.6 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | lib |
ShowScikit-Build, or skbuild, is an improved build system generator for CPython C/C++/Fortran/Cython extensions.
| -| [setuptools-rust](https://github.com/PyO3/setuptools-rust) | 1.9.0 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | tools |
Showsetuptools-rust is a plugin for setuptools to build Rust Python extensions implemented with PyO3 or rust-cpython.
| -| [snakemake](https://snakemake.readthedocs.io) | 9.3.5 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
ShowThe Snakemake workflow management system is a tool to create reproducible and scalable data analyses.
| -| [snappy](https://github.com/google/snappy) | 1.2.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowSnappy is a compression/decompression library. It does not aim for maximum compression, or compatibility with any other compression library; instead, it aims for very high speeds and reasonable compression.
| -| [sympy](https://sympy.org/) | 1.13.3 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | math |
ShowSymPy is a Python library for symbolic mathematics. It aims to become a full-featured computer algebra system (CAS) while keeping the code as simple as possible in order to be comprehensible and easily extensible. SymPy is written entirely in Python and does not require any external libraries.
| -| [tbb](https://github.com/oneapi-src/oneTBB) | 2021.13.0 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | lib |
ShowIntel(R) Threading Building Blocks (Intel(R) TBB) lets you easily write parallel C++ programs that take full advantage of multicore performance, that are portable, composable and have future-proof scalability.
| -| [test-drive](https://github.com/fortran-lang/test-drive) | 0.5.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lang |
ShowThis project offers a lightweight, procedural unit testing framework based on nothing but standard Fortran.
| -| [tlparse](https://github.com/ezyang/tlparse) | 0.3.37 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
ShowParse structured PT2 (PyTorch 2) logs
| -| [tmpi](https://github.com/Azrael3000/tmpi/) | 1.0.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | debugger |
ShowRun multiple MPI processes as a grid in a new tmux window and multiplex keyboard input to all of them. Useful for debugging MPI application with GDB.
| -| [unittest-xml-reporting](http://github.com/xmlrunner/unittest-xml-reporting) | 3.1.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | tools |
ShowA unittest test runner that can save test results to XML files in xUnit format. The files can be consumed by a wide range of tools, such as build systems, IDEs and continuous integration servers.
| -| [utf8proc](https://github.com/JuliaStrings/utf8proc) | 2.9.0 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
Showutf8proc is a small, clean C library that provides Unicode normalization, case-folding, and other operations for data in the UTF-8 encoding.
| -| [util-linux](https://www.kernel.org/pub/linux/utils/util-linux) | 2.40 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | tools |
ShowSet of Linux utilities
| -| [virtualenv](https://github.com/pypa/virtualenv) | 20.26.2 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | tools |
ShowA tool for creating isolated virtual python environments.
| -| [wxWidgets](https://www.wxwidgets.org) | 3.2.6 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | vis |
ShowwxWidgets is a C++ library that lets developers create applications for Windows, Mac OS X, Linux and other platforms with a single code base. It has popular language bindings for Python, Perl, Ruby and many other languages, and unlike other cross-platform toolkits, wxWidgets gives applications a truly native look and feel because it uses the platform's native API rather than emulating the GUI.
| -| [x264](https://www.videolan.org/developers/x264.html) | 20240513 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | vis |
Showx264 is a free software library and application for encoding video streams into the H.264/MPEG-4 AVC compression format, and is released under the terms of the GNU GPL.
| -| [x265](https://x265.org/) | 3.6 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | vis |
Showx265 is a free software library and application for encoding video streams into the H.265 AVC compression format, and is released under the terms of the GNU GPL.
| -| [xmlf90](https://gitlab.com/siesta-project/libraries/xmlf90) | 1.6.3 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | data |
ShowA fast XML parser and generator in Fortran
| -| [xorg-macros](https://gitlab.freedesktop.org/xorg/util/macros) | 1.20.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | devel |
ShowX.org macros utilities.
| -| [xprop](https://www.x.org/wiki/) | 1.2.8 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | vis |
ShowThe xprop utility is for displaying window and font properties in an X server. One window or font is selected using the command line arguments or possibly in the case of a window, by clicking on the desired window. A list of properties is then given, possibly with formatting information.
| -| [xxd](https://www.vim.org) | 9.1.1275 | AMD EPYC, Intel Broadwell, Intel Skylake, NVIDIA Tesla | aion, iris | tools |
Showxxd is part of the VIM package and this will only install xxd, not vim! xxd converts to/from hexdumps of binary files.
| -| [zlib](https://www.zlib.net/) | 1.2.13 | NVIDIA Tesla | iris | lib |
Showzlib is designed to be a free, general-purpose, legally unencumbered -- that is, not covered by any patents -- lossless data-compression library for use on virtually any computer hardware and operating system.
| -| [zlib](https://www.zlib.net/) | 1.2.13
1.3.1 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
Showzlib is designed to be a free, general-purpose, legally unencumbered -- that is, not covered by any patents -- lossless data-compression library for use on virtually any computer hardware and operating system.
| -| [zstd](https://facebook.github.io/zstd) | 1.5.6 | AMD EPYC, Intel Broadwell, Intel Skylake | aion, iris | lib |
ShowZstandard is a real-time compression algorithm, providing high compression ratios. It offers a very wide range of compression/speed trade-off, while being backed by a very fast decoder. It also offers a special mode for small data, called dictionary compression, and can create dictionaries from any sample set.
| \ No newline at end of file diff --git a/docs/software/swsets/2025a.md b/docs/software/swsets/2025a.md deleted file mode 100644 index 396d1f824..000000000 --- a/docs/software/swsets/2025a.md +++ /dev/null @@ -1,12 +0,0 @@ -## Proposed layout - -| Software / Version | Available architecture builds | Category | Description | -|:-----------------------------------------------|:-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:-----------|:-----------------------------------------------------------------------------------------------------------------------------| -| [AOCL-BLAS](https://github.com/amd/blis) / 5.0 |
Show
irisbroadwell(GCC-12, system), skylake(GCC-12)
epycepyc(GCC-12)
| numlib |
ShowAOCL-BLAS is AMD's optimized version of BLAS targeted for AMD EPYC and Ryzen CPUs.
| - -## Discarded trials - -| Software {: style="background-color: #ffcc00; color: #000;"} | Version {: style="background-color: #ffcc00; color: #000;"} | Architectures | Category | Description | -|:------------------------------------------------------------------------------------------------------|:------------------------------------------------------------|:-------------------------------------------------------|:-----------|:-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------| -| [AOCL-BLAS](https://github.com/amd/blis) | 5.0 |
Show
irisaion
broadwellskylake
epyc
| numlib |
ShowAOCL-BLAS is AMD's optimized version of BLAS for AMD EPYC and Ryzen CPUs.
| -| [AOCL-BLAS](https://github.com/amd/blis) | 5.0 |
Show
irisbroadwell(GCC-12, system), skylake(GCC-12)
epycepyc(GCC-12)
| numlib |
ShowAOCL-BLAS is AMD's optimized version of BLAS targeted for AMD EPYC and Ryzen CPUs.
| diff --git a/mkdocs.yml b/mkdocs.yml index c0612b61a..9a97a7d99 100644 --- a/mkdocs.yml +++ b/mkdocs.yml @@ -147,9 +147,6 @@ nav: - Software Sets: - 2019b: 'software/swsets/2019b.md' - 2020a: 'software/swsets/2020b.md' - - 2023b: 'software/swsets/2023b.md' - - 2024a: 'software/swsets/2024a.md' - - 2025a: 'software/swsets/2025a.md' ### END GENERATED CONTENT # - Software Set Versioning: 'software/swsets.md' - Compiling/building your own software: 'software/build.md' From 27ab39cd7afbd2c2f7d9c1d7109c1b02c9121c27 Mon Sep 17 00:00:00 2001 From: Georgios Kafanas Date: Fri, 21 Aug 2026 10:34:30 +0200 Subject: [PATCH 18/20] [REFACTOR] Remove resif script for reporting installed modules --- scripts/resif3_module2markdown.py | 638 ------------------------------ 1 file changed, 638 deletions(-) delete mode 100755 scripts/resif3_module2markdown.py diff --git a/scripts/resif3_module2markdown.py b/scripts/resif3_module2markdown.py deleted file mode 100755 index 7682de1ce..000000000 --- a/scripts/resif3_module2markdown.py +++ /dev/null @@ -1,638 +0,0 @@ -#!/usr/bin/env python3 -# Time-stamp: -############################################################################### - -""" -Collect and analyse the current RESIF3 software set available on the ULHPC -platform -- see https://github.com/ULHPC/sw - -Render (i.e.) generate output markdown files reflecting the available software -and modules to be integrated into the current hpc-docs.uni.lu site. -""" - -import subprocess -import re -import pandas as pd -import click # prefered for CLI -import confuse -import sys -import os -import logging -import logging.config -import argparse -import pathlib -import pprint -import socket -import itertools -import yaml -from functools import reduce - -APPNAME = 'resif3_module2markdown' -__version__ = '1.0.0' - -CONTEXT_SETTINGS = dict(help_option_names=['-h', '--help']) -DEFAULT_SETTINGS = { - 'clusters': [ - 'iris', - 'aion' - ], - 'archs': [ - 'broadwell', - 'skylake', - 'gpu', - 'epyc' - ], - 'swsets_versions': [ - '2019b', - '2020b' - ], - 'resif_root_path': '/opt/apps/resif', - 'yamlfile': 'resif_modules.yaml', - 'output_dir': 'docs/software/swsets', - 'categories': { - 'bio': "Biology", - 'cae': "CFD/Finite element modelling", - 'chem': "Chemistry", - 'compiler': "Compilers", - 'data': "Data processing", - 'debugger': "Debugging", - 'devel': "Development", - 'geo': "Weather modelling", - 'lang': "Programming Languages", - 'lib': "Libraries", - 'math': "Mathematics", - 'mpi': "MPI", - 'numlib': "Numerical libraries", - 'perf': "Performance measurements", - 'phys': "Physics", - 'system': "System-level software", - 'toolchain': "Toolchains (software stacks)", - 'tools': "Utilities", - 'vis': "Visualisation" - } -} - -def dict_merge(dct, merge_dct): - """ - Deep Dictionary Merge - see https://gist.github.com/angstwad/bf22d1822c38a92ec0a9 - """ - dct = dct.copy() - - for k, v in merge_dct.items(): - if (k in dct and isinstance(dct[k], dict) and isinstance(merge_dct[k], dict)): - dct[k] = dict_merge(dct[k], merge_dct[k]) - else: - if (bool(dct) and k in dct.keys() and isinstance(dct[k], list)): - dct[k] = list(set(dct[k] + merge_dct[k])) - else: - dct[k] = merge_dct[k] - - return dct - -### -# GENERIC SETTINGS / LOGS Management -### -## settings management with confuse -class ConfigValueNotFound(Exception): - pass -confuse.NotFoundError = ConfigValueNotFound -settings = dict_merge(confuse.Configuration(APPNAME, __name__).get(), - DEFAULT_SETTINGS) - -## logging -FORMATTER = logging.Formatter("[%(name)s] %(asctime)s — %(levelname)s: %(message)s") - -def get_console_handler(): - console_handler = logging.StreamHandler(sys.stdout) - console_handler.setFormatter(FORMATTER) - return console_handler -# def get_file_handler(): -# file_handler = TimedRotatingFileHandler(LOG_FILE, when='midnight') -# file_handler.setFormatter(FORMATTER) -# return file_handler -def get_logger(logger_name): - logger = logging.getLogger(logger_name) - logger.setLevel(logging.INFO) - logger.addHandler(get_console_handler()) - # logger.addHandler(get_file_handler()) - # with this pattern, it's rarely necessary to propagate the error up to parent - logger.propagate = False - return logger - -log = get_logger(APPNAME) - -### -# UTILS HELPERS -### - -def dict_contains(dct, fkey, fvalue): - """ - Deep dictionary searching with filters - """ - for k, v in dct.items(): - if k == fkey: - # Simple check if the key is present (no value comparison) - if fvalue is None: - return True - # Check presence of the value in the corresponding list - if isinstance(v, list): - if v[0] in fvalue: - return True - # Check if the value is a key - if isinstance(v, dict): - if list(v.keys())[0] in fvalue: - return True - if v == fvalue: - return True - - # We continue to dig into the dictionary if we can continue to go down - if isinstance(v, dict): - if dict_contains(v, fkey, fvalue): - return True - - return False - -def create_output_path(path): - """ - Create and return the created path/folder object - """ - folder = pathlib.Path(path) - if not folder.exists(): - folder.mkdir(parents=True) - return folder - -def get_catlongname(cat): - """ - Return a long name (if known) for a given category. - """ - knowncats = settings['categories'] - if cat is None: return knowncats - if cat in knowncats.keys(): return knowncats[cat] - else: return cat.upper() - - - - - -#################### COLLECT ##################### - -def get_module_details_from_file(mfpath, filters): - """ - Get module information based on its LUA filepath - - Args: - mfpath (str): path to resif root directory - filters (dict): eventual filters to apply - - Return module dictionary with description, category, ... if succesfully retrieved - Return False is failed - """ - - try: - - if "/opt/apps/resif/" not in mfpath: - raise Exception('File provided does not come from /opt/apps/resif') - - path_splitted = mfpath.split('/') - path_splitted.pop(0) - - if path_splitted[-1].split('.')[-1] != 'lua': - raise Exception('File provided does not have the LUA extension') - - # Read provided file - f = open(mfpath, 'r') - raw = f.readlines() - f.close() - - # Get information from filepath - category_name = path_splitted[8].lower() - software_name = path_splitted[9] - cluster = path_splitted[3] - arch = path_splitted[5] - swset = path_splitted[4] - - # Parse the file to retrieve description and www page - # The description is split between many lines, get them in a list - desc = [] - version = "" - isDescLine = False - for line in raw: - line = line.strip() - if line.startswith("whatis([[Description:") or line.startswith("whatis([==[Description:"): isDescLine = True - if line.startswith("whatis([[Homepage:") or line.startswith("whatis([==[Homepage:"): - isDescLine = False # description ends before www whatis block - match_homepage = line - if isDescLine and (line != ''): desc.append(line) - if line.startswith("setenv(\"EBVERSION"): - version = re.search('setenv\("EBVERSION.*", "(.+)\"\)', line).group(1) - - desc[0] = desc[0].replace('whatis([[Description: ',"").replace('whatis([==[Description: ',"").replace('whatis([==[Description:',"") - desc[-1] = desc[-1].replace(']])','').replace(']==])','') - full_desc = (" ".join(filter(None, desc))) - - www = match_homepage.replace('whatis([[Homepage: ',"").replace('whatis([==[Homepage: ',"").replace(']])',"").replace(']==])',"") - - module_details = { - category_name: { - software_name: { - "www": www, - "desc": full_desc, - "versions": { - version: { - "swsets": { - swset: { - "clusters": [cluster], - "archs": [arch], - } - } - } - } - } - } - } - - # Excluding the result if the module does not correspond to filters - for filter_key, filter_value in filters.items(): - if not dict_contains(module_details, filter_key, filter_value): - return False - - return module_details - - except Exception as e: - print(e) - return False - - -def collect_softwares(paths, filters=None): - """ - Iterate and deepmerge over list of module filepath to generate a map - - Args: - paths (str): resif root path to analyse - filters (dict): eventual list of filters to apply ('archs','clusters' or 'swsets') - Default: None - - Return dict of collected software - """ - collected_softwares = {} - - for filepath in paths: - module_details = get_module_details_from_file(filepath.rstrip(), filters) - # If the module is found and corresponds to filters we gave, then we add it to the returned map - if module_details: - collected_softwares = dict_merge(collected_softwares, module_details) - - return collected_softwares - -#################### RENDER ##################### - -### -# Render markdown files from collected software list -## -def render_markdown_from_collect(collected_softwares, - output_path='docs/software/swsets', - filters=None): - """ - Write into markdown files software details taken out from the available - software modules analysed by the 'collect' action (invoking - collect_softwares(...)) aimed to be displayed in the mkdocs[-material] - website - This will typically generate the following file structure: - - / - ├── all_softwares.md list of all software ever built - ├── .md software list in RESIF swset - ├── .md list of all software belonging to category '' - └── / - . ├── .md short summary and available version for software - . └── [...] belonging to category - - Args: - collected_softwares (dict): dictionnary of all collected software (typically loaded - from a yaml file) - output_path (str): where to store the generated markdown files - filters (dict): eventual filters to apply - """ - output_folder = create_output_path(output_path) - all_softwares={} - category={} - softwares_swset={} - - for category_name, category_softwares in collected_softwares.items(): - category_folder = create_output_path(output_folder / category_name) - - for software_name, software_details in category_softwares.items(): - software_file = category_folder / (software_name + ".md") - - # Flattening software details so we can easily parse and retrieve data from the nested dict - # Using '|' as separator as other caracters such as '_', '-' or '.' can be used in a version label - software_details_flatten = pd.json_normalize(software_details, sep='|').to_dict(orient='records')[0] - - # Append website to software name in a markdown manner for later use (table indexing) - software_key = "[{1}]({0})".format(software_details['www'] if software_details['www'] else '#', software_name) - - # Retrieve generic information of a software (all_software.md) formatted to be usable in a DataFrame - software_without_details = { - software_key: [] - } - - # Getting versions, swsets, archs, clusters, long category name and description - available_versions = software_details["versions"].keys() - software_without_details[software_key].append(', '.join(available_versions)) # Versions - - software_without_details[software_key].append( - ', '.join( - pd.unique( - list(map( - lambda x: x.split('|')[3], - filter( - lambda key: bool(re.search('versions\|.+\|swsets\|.+', key)), - software_details_flatten.keys() - ) - )) - ).tolist() - ) - ) # Swets - - software_without_details[software_key].append( - ', '.join( - pd.unique( - list(itertools.chain.from_iterable(map( - lambda x: x[1], - filter( - lambda item: bool(re.search('versions\|.+\|swsets\|.+\|archs', item[0])), - software_details_flatten.items() - )))) - ).tolist() - ) - ) # Archs - software_without_details[software_key].append( - ', '.join( - pd.unique( - list(itertools.chain.from_iterable(map( - lambda x: x[1], - filter( - lambda item: bool(re.search('versions\|.+\|swsets\|.+\|clusters', item[0])), - software_details_flatten.items() - )))) - ).tolist() - ) - ) # Clusters - - software_without_details[software_key].append(get_catlongname(category_name)) #Category - software_without_details[software_key].append(software_details['desc']) #Description - - # Retrieve detailed information of a software (category/software.md) formatted to be usable in a DataFrame - detailed_software_array = [] - for v in available_versions: - - # Get all swsets available for the given version - available_swsets = pd.unique( - list(map( - lambda x: x.split('|')[3], - filter( - lambda key: bool(re.search('versions\|' + re.escape(v) + '\|swsets\|.+', key)), - software_details_flatten.keys() - ) - )) - ).tolist() - - for s in available_swsets: - - # Get clusters and archs for a given (version, swset) of the current software - keys = list(filter( - lambda key: bool(re.search('versions\|' + re.escape(v) + '|swsets\|' + re.escape(s), key)), - software_details_flatten.keys() - )) - cluster_key = list(filter(lambda key: 'clusters' in key ,keys))[0] - archs_key = list(filter(lambda key: 'archs' in key ,keys))[0] - - detailed_software_array.append([ - v, - s, - ', '.join(software_details_flatten[archs_key]), - ', '.join(software_details_flatten[cluster_key]) - ]) - - # Taking advantage of parsing all swset to add the current version of this software to the corresponding swset structure (swset.md) - if s not in softwares_swset: - softwares_swset[s] = {} - softwares_swset[s][software_key + ' ' + v] = [ - ', '.join(software_details_flatten[archs_key]), - ', '.join(software_details_flatten[cluster_key]), - get_catlongname(category_name), - software_details['desc'] - ] - - # Writing into category/software.md information we gathered - if filters['categories'] and category_name not in filters['categories']: continue - if filters['swsets']: continue - log.info(f'Generating markdown file { software_file }') - df = pd.DataFrame(detailed_software_array, columns=['Version','Swset','Architectures','Clusters']) - with software_file.open("w") as fd: - fd.write("### %s\n" % software_key) - fd.write("\n") - fd.write("* [Official website](%s)\n" % software_details['www']) - fd.write("* __Category__: %s (%s)\n" % (get_catlongname(category_name), category_name)) - fd.write(" - `module load %s/%s[/]`\n" % (category_name, software_name)) - fd.write("\n") - fd.write("Available versions of %s on ULHPC platforms:\n" % software_key) - fd.write("\n") - with software_file.open("a") as fd: - df.to_markdown(fd) - with software_file.open("a") as fd: - fd.write("\n\n") - fd.write("> %s\n" % software_details['desc']) - - - - # Make sure we keep generic information for all_softwares.md - all_softwares = {**all_softwares, **software_without_details} - - # Write into SWSET.md (example: 2020b.md) all included softwares information - for swset_label, swset_list_softwares in softwares_swset.items(): - if filters['swsets'] and (swset_label not in filters['swsets']): continue - swset_file = output_folder / (swset_label + ".md") - log.info(f'Generating markdown file { swset_file }') - df = pd.DataFrame.from_dict(swset_list_softwares, orient="index", columns=['Architectures','Clusters','Category','Description']) - df.index.name='Software' - df.sort_values(by=['Software'], inplace=True) - with (swset_file).open("w") as fd: - fd.write("Alphabetical list of available ULHPC software ") - fd.write("belonging to the '%s' software set.\n" % swset_label) - fd.write("To load a software of this set, use:\n") - fd.write("```bash\n") - fd.write("# Eventually: resif-load-swset-[...]\n") - fd.write("module load /[/]\n") - fd.write("```\n") - fd.write("\n") - with (swset_file).open("a") as fd: - df.to_markdown(fd) - - df = pd.DataFrame.from_dict(all_softwares, orient="index", - columns=['Versions', - 'Swsets', - 'Architectures', - 'Clusters', - 'Category', - 'Description']) - df.index.name='Software' - df.sort_values(by=['Software'], inplace=True) - # Write generic software information we gathered in all_software.md - #if (not filters): - log.info(f'Generating markdown file { output_folder }/all_software.md') - with (output_folder / "all_softwares.md").open("w") as fd: - df.to_markdown(fd) - - # restart focusing on software category - # Write into .md (Ex: bio.md) all associated softwares information - df.sort_values(by=['Category'], inplace=True) - for category_name in collected_softwares.keys(): - if filters['categories'] and (category_name not in filters['categories']): - continue - category_df = df[df['Category'] == get_catlongname(category_name)] - category_df = category_df.drop('Category', 1) - #pprint.pprint(category_df) - category_file = output_folder / (category_name + ".md") - if not category_df.empty: - log.info(f'Generating markdown file { category_file }') - with (category_file).open("w") as fd: - #fd.write("## %s (%s)\n" % (get_catlongname(category_name), category_name)) - #fd.write("\n") - fd.write("Alphabetical list of available ULHPC software ") - fd.write("belonging to the '%s' category.\n" % category_name) - fd.write("To load a software of this category, use: ") - fd.write("` module load %s/[/]`\n" % category_name) - fd.write("\n") - with (category_file).open("a") as fd: - category_df.sort_values(by=['Software']).to_markdown(fd) - - -############################################################################### -# Command line interface with click -@click.group(invoke_without_command=True, context_settings=CONTEXT_SETTINGS) -@click.pass_context -@click.option('-V', '--version', flag_value=True, help='Return the version of this script.') -@click.option('-v', '--verbose', count=True, help='Verbosity level') -@click.option('--debug', is_flag=True, default=False, help='Debug mode') -@click.option('--noop', '--dry-run', is_flag=True, default=False, help='Dry run mode') -def cli(ctx, version, verbose, debug, noop): - """ - Main command line interface - """ - if noop: settings['noop'] = True - if debug: - settings['debug'] = True - log.setLevel(logging.DEBUG) - if (verbose > 0): log.setLevel(logging.DEBUG) - if ctx.invoked_subcommand is None: - if version: - click.echo("This is " + os.path.basename(__file__) + " version " + __version__) - else: - click.echo(ctx.get_help()) - # pprint.pprint(settings) - -# sub command 'collect' -@cli.command() -@click.pass_context -@click.option('-a', '--arch', type=click.Choice(settings['archs'], case_sensitive=False), - help='Filter output by RESIF architecture') -@click.option('-c', '--cluster', type=click.Choice(settings['clusters'], case_sensitive=False), - help='Filter output by cluster') -@click.option('-s', '--swset', multiple=True, metavar='YYYY{a|b}', - default=settings['swsets_versions'], show_default=True, - help='Filter output by RESIF software set version (Ex: 2020b)') -@click.option('-p', '--resif-root-path', type=click.Path(exists=True), default=settings['resif_root_path'], - help='set RESIF root path. In particular, modules and software installed by RESIF' + - 'can be found under PATH////{software,modules}') -@click.option('-o', '--output', type=click.File('w'), metavar='YAMLFILE', - default=None, help="Set output file for the dict (Default output to STDOUT)") -def collect(ctx, - arch, # type: Union['broadwell','skylake','gpu','epyc'] - cluster, # type: Union['iris', 'aion'] - swset, # type: Array[str] - resif_root_path, # type: str (directory path) - output # type: Union[None, str] (writable file path) - ): - """ - Collect meta-data dict of the RESIF3 modules installed and - (eventually) export them as YAML - - /!\ IMPORTANT: you probably want to run this operation on the cluster - to access the resif directories - - Use 'make resif-collect' for that purpose - """ - log.info('Collect meta-data for the available RESIF modules') - log.debug(f'click context:\n { pprint.pformat(ctx.params) } ') - log.info(f'RESIF root path: { resif_root_path }') - if bool(re.match('.*(iris|aion)-cluster\.uni\.lux$', socket.getfqdn())): - default_search_paths = "%s/iris %s/aion" % (resif_root_path, resif_root_path) - else: - default_search_paths = "%s" % resif_root_path - log.info(f'default searched path: { default_search_paths }') - find_cmd = [ - "find", - default_search_paths, - " -type d", - "\( -name ebfiles_repo -o -name software \)", - "-prune", - "-false", - "-o", - "-type f \( -iname '*.lua' ! -iname '.*' \)" - ] - log.info(f'Find command to collect lua module files in production:\n { " ".join(find_cmd) }') - # Python 3.6 on iris/aion -- starting 3.7, it is recommended to use - # subprocess.run([ ... ], capture_output=True) - if sys.version_info < (3, 7): - lualist = subprocess.check_output(f'{ " ".join(find_cmd) }', shell=True).decode('utf-8').split() - else: - lualist = subprocess.run(f'{ " ".join(find_cmd) }', capture_output=True).stdout.decode('utf-8').split() - # log.debug(f'List of LUA files to analyse:\n { pprint.pformat(lualist) }') - - filters = {} - if arch is not None: filters['archs'] = arch - if cluster is not None: filters['clusters'] = cluster - if swset is not None: filters['swsets'] = swset - log.debug(f'Filters to apply: { pprint.pformat(filters) }') - result = collect_softwares(lualist, filters) - pprint.pprint(type(result)) - log.info(f'Resulting collected dict: \n{ pprint.pformat(result) }') - if output is not None: - yaml.dump(result, output, allow_unicode=True, default_flow_style=False) - output.close() - -# sub command 'render' -@cli.command(short_help='Generate markdown files summarizing available ULHPC modules') -@click.pass_context -@click.option('-i', '--input', type=click.File('r'), metavar='YAMLFILE', - default='data/%s' % settings['yamlfile'], show_default=True, - help="Set YAML input file for the dict storing resif module informations (generated by the 'collect' subcommand)") -@click.option('-o', '--output-dir', type=click.Path(exists=True), metavar='DIR', - default=settings['output_dir'], show_default=True, - help="Set output directory where to generate the markdown files") -@click.option('-s', '--swset', multiple=True, metavar='YYYY{a|b}', default=None, - help='generate only markdown for the specified software set (Ex: 2020b)') -@click.option('-c', '--category', multiple=True, metavar='NAME', - type=click.Choice(settings['categories'].keys()), - help='generate only markdown for the specified category (Ex: bio)') -def render(ctx, input, output_dir, swset, category): - """ - Generate/Render markdown files summarizing the available software modules - under / - """ - log.info('Render meta-data for the available RESIF modules') - log.debug(f'click context:\n { pprint.pformat(ctx.params) } ') - - log.info(f'Load input resif module information from file { input }') - resif_modules = yaml.load(input, Loader=yaml.SafeLoader) - # pprint.pprint(resif_modules) - filters = {} - if swset is not None: filters['swsets'] = swset - if category is not None: filters['categories'] = category - render_markdown_from_collect(resif_modules, output_dir, filters) - - -if __name__ == "__main__": - cli() From 99df3d69f4b7abdf6d01fc55e2ad2bb326093838 Mon Sep 17 00:00:00 2001 From: Georgios Kafanas Date: Fri, 21 Aug 2026 10:38:28 +0200 Subject: [PATCH 19/20] [STYLE] Fix indentation --- mkdocs.yml | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/mkdocs.yml b/mkdocs.yml index 9a97a7d99..f7d9eda1e 100644 --- a/mkdocs.yml +++ b/mkdocs.yml @@ -145,8 +145,8 @@ nav: - Utilities: 'software/swsets/tools.md' - Visualisation: 'software/swsets/vis.md' - Software Sets: - - 2019b: 'software/swsets/2019b.md' - - 2020a: 'software/swsets/2020b.md' + - 2019b: 'software/swsets/2019b.md' + - 2020a: 'software/swsets/2020b.md' ### END GENERATED CONTENT # - Software Set Versioning: 'software/swsets.md' - Compiling/building your own software: 'software/build.md' From 80711fe74c7a06f62593a06a617b97c676f6a97f Mon Sep 17 00:00:00 2001 From: Georgios Kafanas Date: Fri, 21 Aug 2026 10:40:20 +0200 Subject: [PATCH 20/20] Remove deprecated code --- scripts/extract_module_metadata.py | 20 -------------------- 1 file changed, 20 deletions(-) diff --git a/scripts/extract_module_metadata.py b/scripts/extract_module_metadata.py index 87d295948..af4050e09 100644 --- a/scripts/extract_module_metadata.py +++ b/scripts/extract_module_metadata.py @@ -305,23 +305,3 @@ def main(): if __name__ == "__main__": main() - -def set_nested_map(mp, entries, value): - if len(entries) == 0: - return dict() - - entry = entries.pop(0) - if len(entries) == 0: - mp[entry] = value - return mp - - if len(mp) == 0: - mp[entry] = dict() - - val = set_nested_map(mp[entry], entries, value) - mp[entry] = val - - return mp - -# e.g. software_tables = set_nested_map(software_tables, [cluster, arch, version], table) -