GOcontext/.github/workflows/BiocCheck.yaml at main · Thomas-Rauter/GOcontext · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
on:
  push:
    branches: [main]
  pull_request:
    branches: [main]

name: BiocCheck

jobs:
  BiocCheck:
    runs-on: ubuntu-22.04

    name: BiocCheck (${{ matrix.bioc }})

    strategy:
      fail-fast: false
      matrix:
        bioc: [release, devel]

    env:
      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
      R_KEEP_PKG_SOURCE: yes

    steps:
      - uses: actions/checkout@v4

      - name: Set up R + Bioconductor
        uses: grimbough/bioc-actions/setup-bioc@v1
        with:
          bioc-version: ${{ matrix.bioc }}

      - name: Install package dependencies
        uses: r-lib/actions/setup-r-dependencies@v2
        with:
          extra-packages: |
            any::rcmdcheck
            bioc::BiocCheck
          needs: check

      - name: Run BiocCheck
        uses: grimbough/bioc-actions/run-BiocCheck@v1